0s autopkgtest [22:35:09]: starting date and time: 2024-11-13 22:35:09+0000 0s autopkgtest [22:35:09]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [22:35:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p7soankl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-h5netcdf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-11.secgroup --name adt-plucky-amd64-python-h5netcdf-20241113-223509-juju-7f2275-prod-proposed-migration-environment-2-6e8609c7-242c-4d10-9ab3-cab92c69b57e --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 344s autopkgtest [22:40:53]: testbed dpkg architecture: amd64 345s autopkgtest [22:40:54]: testbed apt version: 2.9.8 345s autopkgtest [22:40:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 345s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 346s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 346s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [974 kB] 346s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 346s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 346s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [75.3 kB] 346s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [134 kB] 346s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 346s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [280 kB] 346s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [733 kB] 346s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.3 kB] 346s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [38.8 kB] 347s Fetched 2479 kB in 1s (2010 kB/s) 347s Reading package lists... 349s Reading package lists... 349s Building dependency tree... 349s Reading state information... 349s Calculating upgrade... 349s The following NEW packages will be installed: 349s python3.13-gdbm 349s The following packages will be upgraded: 349s bpfcc-tools bpftrace libbpfcc libgnutls30t64 libgpgme11t64 349s libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 libpython3-stdlib 349s libutempter0 python3 python3-bpfcc python3-gdbm python3-minimal python3-newt 349s whiptail 349s 16 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 349s Need to get 4731 kB of archives. 349s After this operation, 608 kB of additional disk space will be used. 349s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 350s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 350s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 350s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls30t64 amd64 3.8.8-2ubuntu1 [1085 kB] 350s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-2ubuntu4 [21.4 kB] 350s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-2ubuntu4 [55.4 kB] 350s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-2ubuntu4 [19.0 kB] 350s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 350s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 350s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libbpfcc amd64 0.30.0+ds-1ubuntu5 [680 kB] 350s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB] 350s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB] 351s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftrace amd64 0.21.2-2ubuntu2 [1791 kB] 351s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 351s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 351s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-0 amd64 1.10.0+ds-3 [73.1 kB] 351s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libutempter0 amd64 1.2.1-4 [9694 B] 351s Fetched 4731 kB in 2s (3027 kB/s) 351s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 351s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 351s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 351s Setting up python3-minimal (3.12.7-1) ... 351s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 352s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 352s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 352s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 352s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 352s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_amd64.deb ... 352s Unpacking libgnutls30t64:amd64 (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 352s Setting up libgnutls30t64:amd64 (3.8.8-2ubuntu1) ... 352s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 352s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_amd64.deb ... 352s Unpacking python3-newt:amd64 (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 352s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_amd64.deb ... 352s Unpacking libnewt0.52:amd64 (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 352s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_amd64.deb ... 352s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 352s Selecting previously unselected package python3.13-gdbm. 352s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_amd64.deb ... 352s Unpacking python3.13-gdbm (3.13.0-2) ... 352s Preparing to unpack .../04-python3-gdbm_3.12.7-1_amd64.deb ... 352s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 352s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_amd64.deb ... 352s Unpacking libbpfcc:amd64 (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 352s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ... 352s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 352s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ... 352s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ... 352s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_amd64.deb ... 352s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ... 352s Preparing to unpack .../09-libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 352s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 352s Preparing to unpack .../10-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 352s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 352s Preparing to unpack .../11-libjson-glib-1.0-0_1.10.0+ds-3_amd64.deb ... 352s Unpacking libjson-glib-1.0-0:amd64 (1.10.0+ds-3) over (1.10.0+ds-2) ... 352s Preparing to unpack .../12-libutempter0_1.2.1-4_amd64.deb ... 352s Unpacking libutempter0:amd64 (1.2.1-4) over (1.2.1-3build1) ... 352s Setting up libnewt0.52:amd64 (0.52.24-2ubuntu4) ... 352s Setting up libutempter0:amd64 (1.2.1-4) ... 352s Setting up whiptail (0.52.24-2ubuntu4) ... 352s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 352s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 352s Setting up libbpfcc:amd64 (0.30.0+ds-1ubuntu5) ... 352s Setting up python3.13-gdbm (3.13.0-2) ... 352s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 352s Setting up bpftrace (0.21.2-2ubuntu2) ... 352s Setting up python3 (3.12.7-1) ... 352s Setting up python3-newt:amd64 (0.52.24-2ubuntu4) ... 353s Setting up libjson-glib-1.0-0:amd64 (1.10.0+ds-3) ... 353s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ... 353s Setting up python3-gdbm:amd64 (3.12.7-1) ... 353s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ... 353s Processing triggers for man-db (2.12.1-3) ... 353s Processing triggers for libc-bin (2.40-1ubuntu3) ... 354s Reading package lists... 354s Building dependency tree... 354s Reading state information... 354s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 354s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 354s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 354s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 354s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 355s Reading package lists... 355s Reading package lists... 355s Building dependency tree... 355s Reading state information... 356s Calculating upgrade... 356s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 356s Reading package lists... 356s Building dependency tree... 356s Reading state information... 356s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 359s autopkgtest [22:41:08]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 359s autopkgtest [22:41:08]: @@@@@@@@@@@@@@@@@@@@ apt-source python-h5netcdf 361s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (dsc) [2388 B] 361s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (tar) [64.6 kB] 361s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-h5netcdf 1.4.0-3 (diff) [6016 B] 361s gpgv: Signature made Tue Nov 12 23:12:03 2024 UTC 361s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 361s gpgv: Can't check signature: No public key 361s dpkg-source: warning: cannot verify inline signature for ./python-h5netcdf_1.4.0-3.dsc: no acceptable signature found 361s autopkgtest [22:41:10]: testing package python-h5netcdf version 1.4.0-3 361s autopkgtest [22:41:10]: build not needed 362s autopkgtest [22:41:11]: test command1: preparing testbed 363s Reading package lists... 363s Building dependency tree... 363s Reading state information... 363s Starting pkgProblemResolver with broken count: 0 363s Starting 2 pkgProblemResolver with broken count: 0 363s Done 364s The following additional packages will be installed: 364s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 364s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 364s libnetcdf19t64 libpython3.13-minimal libpython3.13-stdlib libsz2 364s python-h5netcdf-doc python3-all python3-cftime python3-h5netcdf python3-h5py 364s python3-h5py-serial python3-iniconfig python3-netcdf4 python3-numpy 364s python3-packaging python3-pluggy python3-pytest python3.13 364s python3.13-minimal 364s Suggested packages: 364s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3.13-venv 364s python3.13-doc binfmt-support 364s Recommended packages: 364s javascript-common 364s The following NEW packages will be installed: 364s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 364s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 364s liblzf1 libnetcdf19t64 libpython3.13-minimal libpython3.13-stdlib libsz2 364s python-h5netcdf-doc python3-all python3-cftime python3-h5netcdf python3-h5py 364s python3-h5py-serial python3-iniconfig python3-netcdf4 python3-numpy 364s python3-packaging python3-pluggy python3-pytest python3.13 364s python3.13-minimal 364s 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. 364s Need to get 19.0 MB/19.0 MB of archives. 364s After this operation, 75.5 MB of additional disk space will be used. 364s Get:1 /tmp/autopkgtest.Vg8n21/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [736 B] 364s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 364s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 365s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 365s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 365s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 365s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 365s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 365s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 365s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 365s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 365s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 365s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 366s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 366s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 366s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 366s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-h5netcdf-doc all 1.4.0-3 [52.8 kB] 366s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 366s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 366s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 366s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1 [214 kB] 366s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 367s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 367s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 367s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5netcdf all 1.4.0-3 [47.2 kB] 367s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 367s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1 [645 kB] 367s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 367s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 367s Fetched 19.0 MB in 3s (6445 kB/s) 367s Selecting previously unselected package libpython3.13-minimal:amd64. 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75549 files and directories currently installed.) 367s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 367s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 367s Selecting previously unselected package python3.13-minimal. 367s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 367s Unpacking python3.13-minimal (3.13.0-2) ... 367s Selecting previously unselected package libaec0:amd64. 367s Preparing to unpack .../02-libaec0_1.1.3-1_amd64.deb ... 367s Unpacking libaec0:amd64 (1.1.3-1) ... 367s Selecting previously unselected package libblas3:amd64. 367s Preparing to unpack .../03-libblas3_3.12.0-3build2_amd64.deb ... 367s Unpacking libblas3:amd64 (3.12.0-3build2) ... 367s Selecting previously unselected package libgfortran5:amd64. 367s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 367s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 367s Selecting previously unselected package libsz2:amd64. 367s Preparing to unpack .../05-libsz2_1.1.3-1_amd64.deb ... 367s Unpacking libsz2:amd64 (1.1.3-1) ... 367s Selecting previously unselected package libhdf5-103-1t64:amd64. 367s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 367s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 367s Selecting previously unselected package libhdf5-hl-100t64:amd64. 367s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 367s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 367s Selecting previously unselected package libjs-jquery. 367s Preparing to unpack .../08-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 367s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 367s Selecting previously unselected package libjs-underscore. 367s Preparing to unpack .../09-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 367s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 367s Selecting previously unselected package libjs-sphinxdoc. 367s Preparing to unpack .../10-libjs-sphinxdoc_7.4.7-4_all.deb ... 367s Unpacking libjs-sphinxdoc (7.4.7-4) ... 367s Selecting previously unselected package liblapack3:amd64. 367s Preparing to unpack .../11-liblapack3_3.12.0-3build2_amd64.deb ... 367s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 367s Selecting previously unselected package liblzf1:amd64. 367s Preparing to unpack .../12-liblzf1_3.6-4_amd64.deb ... 367s Unpacking liblzf1:amd64 (3.6-4) ... 367s Selecting previously unselected package libnetcdf19t64:amd64. 367s Preparing to unpack .../13-libnetcdf19t64_1%3a4.9.2-6ubuntu1_amd64.deb ... 367s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 367s Selecting previously unselected package libpython3.13-stdlib:amd64. 367s Preparing to unpack .../14-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 367s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 367s Selecting previously unselected package python-h5netcdf-doc. 367s Preparing to unpack .../15-python-h5netcdf-doc_1.4.0-3_all.deb ... 367s Unpacking python-h5netcdf-doc (1.4.0-3) ... 367s Selecting previously unselected package python3.13. 367s Preparing to unpack .../16-python3.13_3.13.0-2_amd64.deb ... 367s Unpacking python3.13 (3.13.0-2) ... 367s Selecting previously unselected package python3-all. 367s Preparing to unpack .../17-python3-all_3.12.7-1_amd64.deb ... 367s Unpacking python3-all (3.12.7-1) ... 367s Selecting previously unselected package python3-numpy. 367s Preparing to unpack .../18-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 367s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 368s Selecting previously unselected package python3-cftime. 368s Preparing to unpack .../19-python3-cftime_1.6.4-1_amd64.deb ... 368s Unpacking python3-cftime (1.6.4-1) ... 368s Selecting previously unselected package python3-h5py-serial. 368s Preparing to unpack .../20-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 368s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 368s Selecting previously unselected package python3-h5py. 368s Preparing to unpack .../21-python3-h5py_3.11.0-5ubuntu1_all.deb ... 368s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 368s Selecting previously unselected package python3-packaging. 368s Preparing to unpack .../22-python3-packaging_24.1-1_all.deb ... 368s Unpacking python3-packaging (24.1-1) ... 368s Selecting previously unselected package python3-h5netcdf. 368s Preparing to unpack .../23-python3-h5netcdf_1.4.0-3_all.deb ... 368s Unpacking python3-h5netcdf (1.4.0-3) ... 368s Selecting previously unselected package python3-iniconfig. 368s Preparing to unpack .../24-python3-iniconfig_1.1.1-2_all.deb ... 368s Unpacking python3-iniconfig (1.1.1-2) ... 368s Selecting previously unselected package python3-netcdf4. 368s Preparing to unpack .../25-python3-netcdf4_1.7.2-1_amd64.deb ... 368s Unpacking python3-netcdf4 (1.7.2-1) ... 368s Selecting previously unselected package python3-pluggy. 368s Preparing to unpack .../26-python3-pluggy_1.5.0-1_all.deb ... 368s Unpacking python3-pluggy (1.5.0-1) ... 368s Selecting previously unselected package python3-pytest. 368s Preparing to unpack .../27-python3-pytest_8.3.3-1_all.deb ... 368s Unpacking python3-pytest (8.3.3-1) ... 368s Selecting previously unselected package autopkgtest-satdep. 368s Preparing to unpack .../28-1-autopkgtest-satdep.deb ... 368s Unpacking autopkgtest-satdep (0) ... 368s Setting up python3-iniconfig (1.1.1-2) ... 368s Setting up libaec0:amd64 (1.1.3-1) ... 368s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 368s Setting up libblas3:amd64 (3.12.0-3build2) ... 368s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 368s Setting up python3-packaging (24.1-1) ... 368s Setting up liblzf1:amd64 (3.6-4) ... 368s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 368s Setting up python3-pluggy (1.5.0-1) ... 368s Setting up python3.13-minimal (3.13.0-2) ... 369s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 369s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 369s Setting up libsz2:amd64 (1.1.3-1) ... 369s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 369s Setting up liblapack3:amd64 (3.12.0-3build2) ... 369s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 369s Setting up python3.13 (3.13.0-2) ... 370s Setting up python3-pytest (8.3.3-1) ... 370s Setting up python3-all (3.12.7-1) ... 370s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 373s Setting up libjs-sphinxdoc (7.4.7-4) ... 373s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 373s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 373s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 373s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 373s Setting up python-h5netcdf-doc (1.4.0-3) ... 373s Setting up python3-h5py (3.11.0-5ubuntu1) ... 373s Setting up python3-cftime (1.6.4-1) ... 374s Setting up python3-netcdf4 (1.7.2-1) ... 374s Setting up python3-h5netcdf (1.4.0-3) ... 374s Setting up autopkgtest-satdep (0) ... 374s Processing triggers for systemd (256.5-2ubuntu4) ... 374s Processing triggers for man-db (2.12.1-3) ... 374s Processing triggers for libc-bin (2.40-1ubuntu3) ... 377s (Reading database ... 77691 files and directories currently installed.) 377s Removing autopkgtest-satdep (0) ... 377s autopkgtest [22:41:26]: test command1: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k "not ros3" ; done 377s autopkgtest [22:41:26]: test command1: [----------------------- 377s Testing with python3.13: 378s ============================= test session starts ============================== 378s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 378s cachedir: .pytest_cache 378s rootdir: /tmp/autopkgtest.Vg8n21/autopkgtest_tmp/tests 378s configfile: pytest.ini 378s plugins: typeguard-4.4.1 378s collecting ... collected 0 items / 1 error 378s 378s ==================================== ERRORS ==================================== 378s ______________________ ERROR collecting test_h5netcdf.py _______________________ 378s ImportError while importing test module '/tmp/autopkgtest.Vg8n21/autopkgtest_tmp/tests/test_h5netcdf.py'. 378s Hint: make sure your test modules/packages have valid Python names. 378s Traceback: 378s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in 378s from . import _debian_h5py_serial as _h5py 378s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in 378s from . import _errors 378s E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 378s 378s During handling of the above exception, another exception occurred: 378s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 378s return _bootstrap._gcd_import(name[level:], package, level) 378s tests/test_h5netcdf.py:9: in 378s import h5py 378s /usr/lib/python3/dist-packages/h5py/__init__.py:26: in 378s from . import _debian_h5py_mpi as _h5py 378s E ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 378s =========================== short test summary info ============================ 378s ERROR tests/test_h5netcdf.py 378s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 378s =============================== 1 error in 0.38s =============================== 378s autopkgtest [22:41:27]: test command1: -----------------------] 379s command1 FAIL non-zero exit status 2 379s autopkgtest [22:41:28]: test command1: - - - - - - - - - - results - - - - - - - - - - 379s autopkgtest [22:41:28]: test command2: preparing testbed 380s Reading package lists... 380s Building dependency tree... 380s Reading state information... 381s Starting pkgProblemResolver with broken count: 0 381s Starting 2 pkgProblemResolver with broken count: 0 381s Done 381s The following NEW packages will be installed: 381s autopkgtest-satdep 381s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 381s Need to get 0 B/736 B of archives. 381s After this operation, 0 B of additional disk space will be used. 381s Get:1 /tmp/autopkgtest.Vg8n21/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [736 B] 381s Selecting previously unselected package autopkgtest-satdep. 381s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 77691 files and directories currently installed.) 381s Preparing to unpack .../2-autopkgtest-satdep.deb ... 381s Unpacking autopkgtest-satdep (0) ... 381s Setting up autopkgtest-satdep (0) ... 383s (Reading database ... 77691 files and directories currently installed.) 383s Removing autopkgtest-satdep (0) ... 384s autopkgtest [22:41:33]: test command2: set -e ; cp -a h5netcdf/tests "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -m pytest -v tests -k ros3 ; done 384s autopkgtest [22:41:33]: test command2: [----------------------- 384s Testing with python3.13: 384s ============================= test session starts ============================== 384s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 384s cachedir: .pytest_cache 384s rootdir: /tmp/autopkgtest.Vg8n21/autopkgtest_tmp/tests 384s configfile: pytest.ini 384s plugins: typeguard-4.4.1 384s collecting ... collected 0 items / 1 error 384s 384s ==================================== ERRORS ==================================== 384s ______________________ ERROR collecting test_h5netcdf.py _______________________ 384s ImportError while importing test module '/tmp/autopkgtest.Vg8n21/autopkgtest_tmp/tests/test_h5netcdf.py'. 384s Hint: make sure your test modules/packages have valid Python names. 384s Traceback: 384s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in 384s from . import _debian_h5py_serial as _h5py 384s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in 384s from . import _errors 384s E ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 384s 384s During handling of the above exception, another exception occurred: 384s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 384s return _bootstrap._gcd_import(name[level:], package, level) 384s tests/test_h5netcdf.py:9: in 384s import h5py 384s /usr/lib/python3/dist-packages/h5py/__init__.py:26: in 384s from . import _debian_h5py_mpi as _h5py 384s E ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 384s =========================== short test summary info ============================ 384s ERROR tests/test_h5netcdf.py 384s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 384s =============================== 1 error in 0.37s =============================== 385s autopkgtest [22:41:34]: test command2: -----------------------] 385s command2 FAIL non-zero exit status 2 385s autopkgtest [22:41:34]: test command2: - - - - - - - - - - results - - - - - - - - - - 386s autopkgtest [22:41:35]: @@@@@@@@@@@@@@@@@@@@ summary 386s command1 FAIL non-zero exit status 2 386s command2 FAIL non-zero exit status 2 397s virt: nova [W] Skipping flock for amd64 397s virt: Creating nova instance adt-plucky-amd64-python-h5netcdf-20241113-223509-juju-7f2275-prod-proposed-migration-environment-2-6e8609c7-242c-4d10-9ab3-cab92c69b57e from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)... 397s virt: nova [W] nova quota exceeded (attempt #0)