0s autopkgtest [22:30:25]: starting date and time: 2024-11-13 22:30:25+0000
  0s autopkgtest [22:30:25]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [22:30:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lwgkqna6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-gtfparse --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-5.secgroup --name adt-plucky-amd64-python-gtfparse-20241113-223025-juju-7f2275-prod-proposed-migration-environment-15-b6eba20c-e948-4c1d-80e4-90522728b1a8 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
1247s autopkgtest [22:51:12]: testbed dpkg architecture: amd64
1247s autopkgtest [22:51:12]: testbed apt version: 2.9.8
1247s autopkgtest [22:51:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1248s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
1248s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB]
1248s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
1248s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [974 kB]
1248s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
1248s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [75.3 kB]
1248s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [134 kB]
1248s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB]
1249s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [733 kB]
1249s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [280 kB]
1249s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [38.8 kB]
1249s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.3 kB]
1249s Fetched 2479 kB in 1s (2983 kB/s)
1249s Reading package lists...
1251s Reading package lists...
1251s Building dependency tree...
1251s Reading state information...
1251s Calculating upgrade...
1251s The following NEW packages will be installed:
1251s   python3.13-gdbm
1251s The following packages will be upgraded:
1251s   bpfcc-tools bpftrace libbpfcc libgnutls30t64 libgpgme11t64
1251s   libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 libpython3-stdlib
1251s   libutempter0 python3 python3-bpfcc python3-gdbm python3-minimal python3-newt
1251s   whiptail
1251s 16 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
1251s Need to get 4731 kB of archives.
1251s After this operation, 608 kB of additional disk space will be used.
1251s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB]
1252s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB]
1252s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB]
1252s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls30t64 amd64 3.8.8-2ubuntu1 [1085 kB]
1252s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-2ubuntu4 [21.4 kB]
1252s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-2ubuntu4 [55.4 kB]
1252s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-2ubuntu4 [19.0 kB]
1252s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB]
1252s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B]
1252s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libbpfcc amd64 0.30.0+ds-1ubuntu5 [680 kB]
1252s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB]
1252s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB]
1252s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftrace amd64 0.21.2-2ubuntu2 [1791 kB]
1252s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB]
1252s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
1252s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-0 amd64 1.10.0+ds-3 [73.1 kB]
1252s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libutempter0 amd64 1.2.1-4 [9694 B]
1252s Fetched 4731 kB in 1s (6275 kB/s)
1253s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
1253s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ...
1253s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
1253s Setting up python3-minimal (3.12.7-1) ...
1253s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
1253s Preparing to unpack .../python3_3.12.7-1_amd64.deb ...
1253s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
1253s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ...
1253s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
1253s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_amd64.deb ...
1253s Unpacking libgnutls30t64:amd64 (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
1253s Setting up libgnutls30t64:amd64 (3.8.8-2ubuntu1) ...
1253s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
1253s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_amd64.deb ...
1253s Unpacking python3-newt:amd64 (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
1253s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_amd64.deb ...
1253s Unpacking libnewt0.52:amd64 (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
1253s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_amd64.deb ...
1253s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
1253s Selecting previously unselected package python3.13-gdbm.
1253s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_amd64.deb ...
1253s Unpacking python3.13-gdbm (3.13.0-2) ...
1253s Preparing to unpack .../04-python3-gdbm_3.12.7-1_amd64.deb ...
1253s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
1253s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_amd64.deb ...
1253s Unpacking libbpfcc:amd64 (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
1253s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ...
1253s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
1253s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ...
1253s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
1253s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_amd64.deb ...
1253s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ...
1253s Preparing to unpack .../09-libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ...
1253s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
1253s Preparing to unpack .../10-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
1253s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
1253s Preparing to unpack .../11-libjson-glib-1.0-0_1.10.0+ds-3_amd64.deb ...
1253s Unpacking libjson-glib-1.0-0:amd64 (1.10.0+ds-3) over (1.10.0+ds-2) ...
1253s Preparing to unpack .../12-libutempter0_1.2.1-4_amd64.deb ...
1253s Unpacking libutempter0:amd64 (1.2.1-4) over (1.2.1-3build1) ...
1254s Setting up libnewt0.52:amd64 (0.52.24-2ubuntu4) ...
1254s Setting up libutempter0:amd64 (1.2.1-4) ...
1254s Setting up whiptail (0.52.24-2ubuntu4) ...
1254s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
1254s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ...
1254s Setting up libbpfcc:amd64 (0.30.0+ds-1ubuntu5) ...
1254s Setting up python3.13-gdbm (3.13.0-2) ...
1254s Setting up libpython3-stdlib:amd64 (3.12.7-1) ...
1254s Setting up bpftrace (0.21.2-2ubuntu2) ...
1254s Setting up python3 (3.12.7-1) ...
1254s Setting up python3-newt:amd64 (0.52.24-2ubuntu4) ...
1254s Setting up libjson-glib-1.0-0:amd64 (1.10.0+ds-3) ...
1254s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ...
1254s Setting up python3-gdbm:amd64 (3.12.7-1) ...
1254s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ...
1254s Processing triggers for man-db (2.12.1-3) ...
1255s Processing triggers for libc-bin (2.40-1ubuntu3) ...
1255s Reading package lists...
1255s Building dependency tree...
1255s Reading state information...
1255s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1256s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
1256s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
1256s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
1256s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
1257s Reading package lists...
1257s Reading package lists...
1257s Building dependency tree...
1257s Reading state information...
1257s Calculating upgrade...
1257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1257s Reading package lists...
1257s Building dependency tree...
1257s Reading state information...
1257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1260s autopkgtest [22:51:25]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024
1260s autopkgtest [22:51:25]: @@@@@@@@@@@@@@@@@@@@ apt-source python-gtfparse
1261s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (dsc) [2217 B]
1261s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (tar) [14.4 kB]
1261s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-gtfparse 1.3.0+ds-1 (diff) [4296 B]
1262s gpgv: Signature made Sun Dec  4 16:14:43 2022 UTC
1262s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
1262s gpgv:                issuer "emollier@emlwks999.eu"
1262s gpgv: Can't check signature: No public key
1262s dpkg-source: warning: cannot verify inline signature for ./python-gtfparse_1.3.0+ds-1.dsc: no acceptable signature found
1262s autopkgtest [22:51:27]: testing package python-gtfparse version 1.3.0+ds-1
1262s autopkgtest [22:51:27]: build not needed
1262s autopkgtest [22:51:27]: test run-unit-test: preparing testbed
1265s Reading package lists...
1265s Building dependency tree...
1265s Reading state information...
1265s Starting pkgProblemResolver with broken count: 0
1265s Starting 2 pkgProblemResolver with broken count: 0
1265s Done
1265s The following additional packages will be installed:
1265s   libblas3 libgfortran5 liblapack3 python3-dateutil python3-gtfparse
1265s   python3-iniconfig python3-numpy python3-packaging python3-pandas
1265s   python3-pandas-lib python3-pluggy python3-pytest python3-six python3-tz
1265s Suggested packages:
1265s   gcc gfortran python-numpy-doc python3-dev python-pandas-doc
1265s   python3-statsmodels
1265s Recommended packages:
1265s   python3-scipy python3-matplotlib python3-bottleneck python3-numexpr
1265s   python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml
1265s   python3-tables python3-numba
1265s The following NEW packages will be installed:
1265s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 python3-dateutil
1265s   python3-gtfparse python3-iniconfig python3-numpy python3-packaging
1265s   python3-pandas python3-pandas-lib python3-pluggy python3-pytest python3-six
1265s   python3-tz
1265s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded.
1265s Need to get 17.0 MB/17.0 MB of archives.
1265s After this operation, 85.7 MB of additional disk space will be used.
1265s Get:1 /tmp/autopkgtest.0mh0NZ/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B]
1266s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB]
1266s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB]
1266s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB]
1266s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB]
1266s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
1266s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB]
1266s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB]
1266s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB]
1267s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
1267s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB]
1267s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
1267s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB]
1267s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
1267s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB]
1267s Fetched 17.0 MB in 1s (13.7 MB/s)
1267s Selecting previously unselected package libblas3:amd64.
1267s (Reading database ... 
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(Reading database ... 10%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75549 files and directories currently installed.)
1267s Preparing to unpack .../00-libblas3_3.12.0-3build2_amd64.deb ...
1267s Unpacking libblas3:amd64 (3.12.0-3build2) ...
1267s Selecting previously unselected package libgfortran5:amd64.
1267s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_amd64.deb ...
1267s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ...
1267s Selecting previously unselected package liblapack3:amd64.
1267s Preparing to unpack .../02-liblapack3_3.12.0-3build2_amd64.deb ...
1267s Unpacking liblapack3:amd64 (3.12.0-3build2) ...
1267s Selecting previously unselected package python3-six.
1267s Preparing to unpack .../03-python3-six_1.16.0-7_all.deb ...
1267s Unpacking python3-six (1.16.0-7) ...
1267s Selecting previously unselected package python3-dateutil.
1267s Preparing to unpack .../04-python3-dateutil_2.9.0-2_all.deb ...
1267s Unpacking python3-dateutil (2.9.0-2) ...
1267s Selecting previously unselected package python3-numpy.
1267s Preparing to unpack .../05-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ...
1267s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
1268s Selecting previously unselected package python3-tz.
1268s Preparing to unpack .../06-python3-tz_2024.1-2_all.deb ...
1268s Unpacking python3-tz (2024.1-2) ...
1268s Selecting previously unselected package python3-pandas-lib:amd64.
1268s Preparing to unpack .../07-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ...
1268s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ...
1268s Selecting previously unselected package python3-pandas.
1268s Preparing to unpack .../08-python3-pandas_2.2.3+dfsg-5_all.deb ...
1268s Unpacking python3-pandas (2.2.3+dfsg-5) ...
1268s Selecting previously unselected package python3-gtfparse.
1268s Preparing to unpack .../09-python3-gtfparse_1.3.0+ds-1_all.deb ...
1268s Unpacking python3-gtfparse (1.3.0+ds-1) ...
1268s Selecting previously unselected package python3-iniconfig.
1268s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ...
1268s Unpacking python3-iniconfig (1.1.1-2) ...
1268s Selecting previously unselected package python3-packaging.
1268s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ...
1268s Unpacking python3-packaging (24.1-1) ...
1268s Selecting previously unselected package python3-pluggy.
1268s Preparing to unpack .../12-python3-pluggy_1.5.0-1_all.deb ...
1268s Unpacking python3-pluggy (1.5.0-1) ...
1268s Selecting previously unselected package python3-pytest.
1268s Preparing to unpack .../13-python3-pytest_8.3.3-1_all.deb ...
1268s Unpacking python3-pytest (8.3.3-1) ...
1268s Selecting previously unselected package autopkgtest-satdep.
1268s Preparing to unpack .../14-1-autopkgtest-satdep.deb ...
1268s Unpacking autopkgtest-satdep (0) ...
1268s Setting up python3-iniconfig (1.1.1-2) ...
1268s Setting up python3-tz (2024.1-2) ...
1268s Setting up python3-six (1.16.0-7) ...
1268s Setting up libblas3:amd64 (3.12.0-3build2) ...
1268s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
1268s Setting up python3-packaging (24.1-1) ...
1268s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ...
1268s Setting up python3-pluggy (1.5.0-1) ...
1268s Setting up python3-dateutil (2.9.0-2) ...
1268s Setting up liblapack3:amd64 (3.12.0-3build2) ...
1268s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
1268s Setting up python3-pytest (8.3.3-1) ...
1269s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
1270s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ...
1270s Setting up python3-pandas (2.2.3+dfsg-5) ...
1273s Setting up python3-gtfparse (1.3.0+ds-1) ...
1274s Setting up autopkgtest-satdep (0) ...
1274s Processing triggers for man-db (2.12.1-3) ...
1274s Processing triggers for libc-bin (2.40-1ubuntu3) ...
1276s (Reading database ... 78439 files and directories currently installed.)
1276s Removing autopkgtest-satdep (0) ...
1277s autopkgtest [22:51:42]: test run-unit-test: [-----------------------
1278s Testing with python3.13 in /tmp/autopkgtest.0mh0NZ/build.i0F/src:
1278s ============================= test session starts ==============================
1278s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1278s cachedir: .pytest_cache
1278s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1278s plugins: typeguard-4.4.1
1278s collecting ... collected 2 items
1278s 
1278s test/test_create_missing_features.py::test_create_missing_features_identity PASSED [ 50%]
1278s test/test_create_missing_features.py::test_create_missing_features PASSED [100%]
1278s 
1278s ============================== 2 passed in 0.41s ===============================
1278s ============================= test session starts ==============================
1278s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1278s cachedir: .pytest_cache
1278s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1278s plugins: typeguard-4.4.1
1279s collecting ... collected 3 items
1279s 
1279s test/test_expand_attributes.py::test_attributes_in_quotes PASSED         [ 33%]
1279s test/test_expand_attributes.py::test_attributes_without_quotes PASSED    [ 66%]
1279s test/test_expand_attributes.py::test_optional_attributes PASSED          [100%]
1279s 
1279s ============================== 3 passed in 0.28s ===============================
1279s ============================= test session starts ==============================
1279s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1279s cachedir: .pytest_cache
1279s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1279s plugins: typeguard-4.4.1
1279s collecting ... collected 3 items
1279s 
1279s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes PASSED [ 33%]
1279s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols PASSED [ 66%]
1279s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols_other_column PASSED [100%]
1279s 
1279s ============================== 3 passed in 0.29s ===============================
1279s ============================= test session starts ==============================
1279s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1279s cachedir: .pytest_cache
1279s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1279s plugins: typeguard-4.4.1
1280s collecting ... collected 4 items
1280s 
1280s test/test_parse_gtf_lines.py::test_parse_gtf_lines_with_expand_attributes PASSED [ 25%]
1280s test/test_parse_gtf_lines.py::test_parse_gtf_lines_without_expand_attributes PASSED [ 50%]
1280s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_many_fields PASSED [ 75%]
1280s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_few_fields PASSED [100%]
1280s 
1280s ============================== 4 passed in 0.29s ===============================
1280s Testing with python3.12 in /tmp/autopkgtest.0mh0NZ/build.i0F/src:
1280s ============================= test session starts ==============================
1280s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1280s cachedir: .pytest_cache
1280s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1280s plugins: typeguard-4.4.1
1280s collecting ... collected 2 items
1280s 
1280s test/test_create_missing_features.py::test_create_missing_features_identity PASSED [ 50%]
1280s test/test_create_missing_features.py::test_create_missing_features PASSED [100%]
1280s 
1280s ============================== 2 passed in 0.29s ===============================
1281s ============================= test session starts ==============================
1281s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1281s cachedir: .pytest_cache
1281s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1281s plugins: typeguard-4.4.1
1281s collecting ... collected 3 items
1281s 
1281s test/test_expand_attributes.py::test_attributes_in_quotes PASSED         [ 33%]
1281s test/test_expand_attributes.py::test_attributes_without_quotes PASSED    [ 66%]
1281s test/test_expand_attributes.py::test_optional_attributes PASSED          [100%]
1281s 
1281s ============================== 3 passed in 0.27s ===============================
1281s ============================= test session starts ==============================
1281s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1281s cachedir: .pytest_cache
1281s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1281s plugins: typeguard-4.4.1
1281s collecting ... collected 3 items
1281s 
1281s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes PASSED [ 33%]
1281s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols PASSED [ 66%]
1281s test/test_multiple_values_for_tag_attribute.py::test_parse_tag_attributes_with_usecols_other_column PASSED [100%]
1281s 
1281s ============================== 3 passed in 0.28s ===============================
1282s ============================= test session starts ==============================
1282s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3
1282s cachedir: .pytest_cache
1282s rootdir: /tmp/autopkgtest.0mh0NZ/build.i0F/src
1282s plugins: typeguard-4.4.1
1282s collecting ... collected 4 items
1282s 
1282s test/test_parse_gtf_lines.py::test_parse_gtf_lines_with_expand_attributes PASSED [ 25%]
1282s test/test_parse_gtf_lines.py::test_parse_gtf_lines_without_expand_attributes PASSED [ 50%]
1282s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_many_fields PASSED [ 75%]
1282s test/test_parse_gtf_lines.py::test_parse_gtf_lines_error_too_few_fields PASSED [100%]
1282s 
1282s ============================== 4 passed in 0.29s ===============================
1282s autopkgtest [22:51:47]: test run-unit-test: -----------------------]
1283s autopkgtest [22:51:48]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
1283s run-unit-test        PASS
1283s autopkgtest [22:51:48]: test autodep8-python3: preparing testbed
1567s autopkgtest [22:56:32]: testbed dpkg architecture: amd64
1567s autopkgtest [22:56:32]: testbed apt version: 2.9.8
1567s autopkgtest [22:56:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1568s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
1568s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
1568s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB]
1568s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
1568s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [974 kB]
1569s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [134 kB]
1569s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [75.3 kB]
1569s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB]
1569s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [733 kB]
1569s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [280 kB]
1569s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.3 kB]
1569s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [38.8 kB]
1569s Fetched 2479 kB in 1s (2960 kB/s)
1569s Reading package lists...
1571s Reading package lists...
1571s Building dependency tree...
1571s Reading state information...
1571s Calculating upgrade...
1571s The following NEW packages will be installed:
1571s   python3.13-gdbm
1571s The following packages will be upgraded:
1571s   bpfcc-tools bpftrace libbpfcc libgnutls30t64 libgpgme11t64
1571s   libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 libpython3-stdlib
1571s   libutempter0 python3 python3-bpfcc python3-gdbm python3-minimal python3-newt
1571s   whiptail
1571s 16 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
1571s Need to get 4731 kB of archives.
1571s After this operation, 608 kB of additional disk space will be used.
1571s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB]
1571s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB]
1571s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB]
1571s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls30t64 amd64 3.8.8-2ubuntu1 [1085 kB]
1572s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-2ubuntu4 [21.4 kB]
1572s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-2ubuntu4 [55.4 kB]
1572s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-2ubuntu4 [19.0 kB]
1572s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB]
1572s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B]
1572s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libbpfcc amd64 0.30.0+ds-1ubuntu5 [680 kB]
1572s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bpfcc all 0.30.0+ds-1ubuntu5 [40.4 kB]
1572s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 bpfcc-tools all 0.30.0+ds-1ubuntu5 [697 kB]
1572s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftrace amd64 0.21.2-2ubuntu2 [1791 kB]
1572s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB]
1572s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
1572s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-glib-1.0-0 amd64 1.10.0+ds-3 [73.1 kB]
1572s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libutempter0 amd64 1.2.1-4 [9694 B]
1572s Fetched 4731 kB in 1s (6611 kB/s)
1572s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 20%
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(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
1572s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ...
1572s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
1572s Setting up python3-minimal (3.12.7-1) ...
1573s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
1573s Preparing to unpack .../python3_3.12.7-1_amd64.deb ...
1573s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
1573s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ...
1573s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
1573s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_amd64.deb ...
1573s Unpacking libgnutls30t64:amd64 (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ...
1573s Setting up libgnutls30t64:amd64 (3.8.8-2ubuntu1) ...
1573s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
1573s Preparing to unpack .../00-python3-newt_0.52.24-2ubuntu4_amd64.deb ...
1573s Unpacking python3-newt:amd64 (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
1573s Preparing to unpack .../01-libnewt0.52_0.52.24-2ubuntu4_amd64.deb ...
1573s Unpacking libnewt0.52:amd64 (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
1573s Preparing to unpack .../02-whiptail_0.52.24-2ubuntu4_amd64.deb ...
1573s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ...
1573s Selecting previously unselected package python3.13-gdbm.
1573s Preparing to unpack .../03-python3.13-gdbm_3.13.0-2_amd64.deb ...
1573s Unpacking python3.13-gdbm (3.13.0-2) ...
1573s Preparing to unpack .../04-python3-gdbm_3.12.7-1_amd64.deb ...
1573s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
1573s Preparing to unpack .../05-libbpfcc_0.30.0+ds-1ubuntu5_amd64.deb ...
1573s Unpacking libbpfcc:amd64 (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
1573s Preparing to unpack .../06-python3-bpfcc_0.30.0+ds-1ubuntu5_all.deb ...
1573s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
1573s Preparing to unpack .../07-bpfcc-tools_0.30.0+ds-1ubuntu5_all.deb ...
1573s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu5) over (0.30.0+ds-1ubuntu4) ...
1573s Preparing to unpack .../08-bpftrace_0.21.2-2ubuntu2_amd64.deb ...
1573s Unpacking bpftrace (0.21.2-2ubuntu2) over (0.21.2-2) ...
1573s Preparing to unpack .../09-libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ...
1573s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
1573s Preparing to unpack .../10-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ...
1573s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ...
1573s Preparing to unpack .../11-libjson-glib-1.0-0_1.10.0+ds-3_amd64.deb ...
1573s Unpacking libjson-glib-1.0-0:amd64 (1.10.0+ds-3) over (1.10.0+ds-2) ...
1573s Preparing to unpack .../12-libutempter0_1.2.1-4_amd64.deb ...
1573s Unpacking libutempter0:amd64 (1.2.1-4) over (1.2.1-3build1) ...
1573s Setting up libnewt0.52:amd64 (0.52.24-2ubuntu4) ...
1573s Setting up libutempter0:amd64 (1.2.1-4) ...
1573s Setting up whiptail (0.52.24-2ubuntu4) ...
1573s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
1573s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ...
1573s Setting up libbpfcc:amd64 (0.30.0+ds-1ubuntu5) ...
1573s Setting up python3.13-gdbm (3.13.0-2) ...
1573s Setting up libpython3-stdlib:amd64 (3.12.7-1) ...
1573s Setting up bpftrace (0.21.2-2ubuntu2) ...
1573s Setting up python3 (3.12.7-1) ...
1574s Setting up python3-newt:amd64 (0.52.24-2ubuntu4) ...
1574s Setting up libjson-glib-1.0-0:amd64 (1.10.0+ds-3) ...
1574s Setting up python3-bpfcc (0.30.0+ds-1ubuntu5) ...
1574s Setting up python3-gdbm:amd64 (3.12.7-1) ...
1574s Setting up bpfcc-tools (0.30.0+ds-1ubuntu5) ...
1574s Processing triggers for man-db (2.12.1-3) ...
1575s Processing triggers for libc-bin (2.40-1ubuntu3) ...
1575s Reading package lists...
1575s Building dependency tree...
1575s Reading state information...
1575s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1575s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
1575s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
1576s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
1576s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
1576s Reading package lists...
1576s Reading package lists...
1577s Building dependency tree...
1577s Reading state information...
1577s Calculating upgrade...
1577s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1577s Reading package lists...
1577s Building dependency tree...
1577s Reading state information...
1577s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1581s Reading package lists...
1581s Building dependency tree...
1581s Reading state information...
1581s Starting pkgProblemResolver with broken count: 0
1581s Starting 2 pkgProblemResolver with broken count: 0
1581s Done
1581s The following additional packages will be installed:
1581s   libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib
1581s   python3-all python3-dateutil python3-gtfparse python3-numpy python3-pandas
1581s   python3-pandas-lib python3-six python3-tz python3.13 python3.13-minimal
1581s Suggested packages:
1581s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc
1581s   python3-statsmodels python3.13-venv python3.13-doc binfmt-support
1581s Recommended packages:
1581s   python3-scipy python3-matplotlib python3-bottleneck python3-numexpr
1581s   python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml
1581s   python3-tables python3-numba
1581s The following NEW packages will be installed:
1581s   autopkgtest-satdep libblas3 libgfortran5 liblapack3 libpython3.13-minimal
1581s   libpython3.13-stdlib python3-all python3-dateutil python3-gtfparse
1581s   python3-numpy python3-pandas python3-pandas-lib python3-six python3-tz
1581s   python3.13 python3.13-minimal
1581s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded.
1581s Need to get 22.5 MB/22.5 MB of archives.
1581s After this operation, 107 MB of additional disk space will be used.
1581s Get:1 /tmp/autopkgtest.0mh0NZ/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B]
1582s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB]
1582s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB]
1582s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB]
1582s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB]
1582s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB]
1582s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB]
1582s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB]
1582s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B]
1582s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB]
1582s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
1582s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB]
1583s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB]
1583s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB]
1583s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
1583s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-gtfparse all 1.3.0+ds-1 [10.1 kB]
1583s Fetched 22.5 MB in 1s (16.3 MB/s)
1583s Selecting previously unselected package libpython3.13-minimal:amd64.
1583s (Reading database ... 
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75549 files and directories currently installed.)
1583s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ...
1583s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ...
1583s Selecting previously unselected package python3.13-minimal.
1583s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ...
1583s Unpacking python3.13-minimal (3.13.0-2) ...
1583s Selecting previously unselected package libblas3:amd64.
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1583s Unpacking libblas3:amd64 (3.12.0-3build2) ...
1583s Selecting previously unselected package libgfortran5:amd64.
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1583s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ...
1583s Selecting previously unselected package liblapack3:amd64.
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1583s Unpacking liblapack3:amd64 (3.12.0-3build2) ...
1583s Selecting previously unselected package libpython3.13-stdlib:amd64.
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1583s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ...
1584s Selecting previously unselected package python3.13.
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1584s Unpacking python3.13 (3.13.0-2) ...
1584s Selecting previously unselected package python3-all.
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1584s Unpacking python3-all (3.12.7-1) ...
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1584s Unpacking python3-six (1.16.0-7) ...
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1584s Unpacking python3-pandas (2.2.3+dfsg-5) ...
1584s Selecting previously unselected package python3-gtfparse.
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1584s Unpacking python3-gtfparse (1.3.0+ds-1) ...
1584s Selecting previously unselected package autopkgtest-satdep.
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1584s Unpacking autopkgtest-satdep (0) ...
1584s Setting up python3-tz (2024.1-2) ...
1584s Setting up python3-six (1.16.0-7) ...
1585s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ...
1585s Setting up libblas3:amd64 (3.12.0-3build2) ...
1585s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
1585s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ...
1585s Setting up python3.13-minimal (3.13.0-2) ...
1585s Setting up python3-dateutil (2.9.0-2) ...
1585s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ...
1585s Setting up liblapack3:amd64 (3.12.0-3build2) ...
1585s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
1585s Setting up python3.13 (3.13.0-2) ...
1586s Setting up python3-all (3.12.7-1) ...
1586s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
1589s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ...
1589s Setting up python3-pandas (2.2.3+dfsg-5) ...
1596s Setting up python3-gtfparse (1.3.0+ds-1) ...
1596s Setting up autopkgtest-satdep (0) ...
1596s Processing triggers for systemd (256.5-2ubuntu4) ...
1596s Processing triggers for man-db (2.12.1-3) ...
1596s Processing triggers for libc-bin (2.40-1ubuntu3) ...
1598s (Reading database ... 79010 files and directories currently installed.)
1598s Removing autopkgtest-satdep (0) ...
1600s autopkgtest [22:57:05]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import gtfparse; print(gtfparse)" ; done
1600s autopkgtest [22:57:05]: test autodep8-python3: [-----------------------
1600s Testing with python3.13:
1600s Traceback (most recent call last):
1600s   File "<string>", line 1, in <module>
1600s     import gtfparse; print(gtfparse)
1600s     ^^^^^^^^^^^^^^^
1600s   File "/usr/lib/python3/dist-packages/gtfparse/__init__.py", line 14, in <module>
1600s     from .create_missing_features import create_missing_features
1600s   File "/usr/lib/python3/dist-packages/gtfparse/create_missing_features.py", line 16, in <module>
1600s     import pandas as pd
1600s   File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in <module>
1600s     raise ImportError(
1600s         "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies)
1600s     )
1600s ImportError: Unable to import required dependencies:
1600s numpy: Error importing numpy: you should not try to import numpy from
1600s         its source directory; please exit the numpy source tree, and relaunch
1600s         your python interpreter from there.
1600s autopkgtest [22:57:05]: test autodep8-python3: -----------------------]
1601s autopkgtest [22:57:06]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
1601s autodep8-python3     FAIL non-zero exit status 1
1601s autopkgtest [22:57:06]: @@@@@@@@@@@@@@@@@@@@ summary
1601s run-unit-test        PASS
1601s autodep8-python3     FAIL non-zero exit status 1
1612s nova [W] Skipping flock for amd64
1612s Creating nova instance adt-plucky-amd64-python-gtfparse-20241113-223025-juju-7f2275-prod-proposed-migration-environment-15-b6eba20c-e948-4c1d-80e4-90522728b1a8 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...
1612s nova [W] Skipping flock for amd64
1612s Creating nova instance adt-plucky-amd64-python-gtfparse-20241113-223025-juju-7f2275-prod-proposed-migration-environment-15-b6eba20c-e948-4c1d-80e4-90522728b1a8 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...