0s autopkgtest [11:46:32]: starting date and time: 2024-11-15 11:46:32+0000 0s autopkgtest [11:46:32]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [11:46:32]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kmy1hpr8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade python-fabio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-12.secgroup --name adt-plucky-amd64-python-fabio-20241115-114632-juju-7f2275-prod-proposed-migration-environment-2-0b747a57-3ed0-46f8-9cec-a1c723c5ec31 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 42s autopkgtest [11:47:14]: testbed dpkg architecture: amd64 42s autopkgtest [11:47:14]: testbed apt version: 2.9.8 42s autopkgtest [11:47:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 43s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 43s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 43s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1056 kB] 43s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 43s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.5 kB] 43s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 43s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [176 kB] 43s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 43s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [297 kB] 43s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [833 kB] 43s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 43s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 43s Fetched 2704 kB in 1s (3266 kB/s) 43s Reading package lists... 46s Reading package lists... 46s Building dependency tree... 46s Reading state information... 46s Calculating upgrade... 46s The following packages will be upgraded: 46s firmware-sof-signed grub-common grub-pc grub-pc-bin grub2-common libcap-ng0 46s libexpat1 lxd-installer man-db pastebinit python3-systemd xfsprogs 46s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 46s Need to get 13.6 MB of archives. 46s After this operation, 477 kB of additional disk space will be used. 46s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 47s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 47s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 47s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 47s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 grub2-common amd64 2.12-5ubuntu7 [672 kB] 47s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc amd64 2.12-5ubuntu7 [137 kB] 47s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc-bin amd64 2.12-5ubuntu7 [1127 kB] 47s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-common amd64 2.12-5ubuntu7 [2110 kB] 47s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 47s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 47s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 47s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 47s Preconfiguring packages ... 48s Fetched 13.6 MB in 1s (13.1 MB/s) 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 48s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 48s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 48s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 48s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 48s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 48s Preparing to unpack .../0-libexpat1_2.6.4-1_amd64.deb ... 48s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 48s Preparing to unpack .../1-man-db_2.13.0-1_amd64.deb ... 48s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 48s Preparing to unpack .../2-grub2-common_2.12-5ubuntu7_amd64.deb ... 48s Unpacking grub2-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 48s Preparing to unpack .../3-grub-pc_2.12-5ubuntu7_amd64.deb ... 48s Unpacking grub-pc (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 48s Preparing to unpack .../4-grub-pc-bin_2.12-5ubuntu7_amd64.deb ... 48s Unpacking grub-pc-bin (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 48s Preparing to unpack .../5-grub-common_2.12-5ubuntu7_amd64.deb ... 48s Unpacking grub-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 49s Preparing to unpack .../6-lxd-installer_9_all.deb ... 49s Unpacking lxd-installer (9) over (8) ... 49s Preparing to unpack .../7-pastebinit_1.7.1-1_all.deb ... 49s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 49s Preparing to unpack .../8-python3-systemd_235-1build5_amd64.deb ... 49s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 49s Preparing to unpack .../9-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 49s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 49s Setting up libexpat1:amd64 (2.6.4-1) ... 49s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 49s Setting up pastebinit (1.7.1-1) ... 49s Setting up man-db (2.13.0-1) ... 49s Updating database of manual pages ... 51s man-db.service is a disabled or a static unit not running, not starting it. 51s Setting up grub-common (2.12-5ubuntu7) ... 51s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 51s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 51s update-initramfs: deferring update (trigger activated) 52s Setting up lxd-installer (9) ... 52s Setting up python3-systemd (235-1build5) ... 52s Setting up grub2-common (2.12-5ubuntu7) ... 52s Setting up grub-pc-bin (2.12-5ubuntu7) ... 52s Setting up grub-pc (2.12-5ubuntu7) ... 53s Installing for i386-pc platform. 53s Installation finished. No error reported. 53s Sourcing file `/etc/default/grub' 53s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 53s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 53s Generating grub configuration file ... 53s Found linux image: /boot/vmlinuz-6.11.0-8-generic 53s Found initrd image: /boot/initrd.img-6.11.0-8-generic 53s Warning: os-prober will not be executed to detect other bootable partitions. 53s Systems on them will not be added to the GRUB boot configuration. 53s Check GRUB_DISABLE_OS_PROBER documentation entry. 53s Adding boot menu entry for UEFI Firmware Settings ... 53s done 53s Processing triggers for libc-bin (2.40-1ubuntu3) ... 53s Processing triggers for install-info (7.1.1-1) ... 53s Processing triggers for initramfs-tools (0.142ubuntu34) ... 53s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 53s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 62s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 62s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 62s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 63s Reading package lists... 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Calculating upgrade... 63s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [11:47:36]: rebooting testbed after setup commands that affected boot 68s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 81s autopkgtest [11:47:53]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 84s autopkgtest [11:47:56]: @@@@@@@@@@@@@@@@@@@@ apt-source python-fabio 86s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-fabio 2024.4.0-2 (dsc) [3002 B] 86s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-fabio 2024.4.0-2 (tar) [726 kB] 86s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-fabio 2024.4.0-2 (diff) [9092 B] 86s gpgv: Signature made Mon May 20 16:56:00 2024 UTC 86s gpgv: using RSA key 9B03EBB98300DF97C2B123BFCC8C6BDD1403F4CA 86s gpgv: issuer "roehling@debian.org" 86s gpgv: Can't check signature: No public key 86s dpkg-source: warning: cannot verify inline signature for ./python-fabio_2024.4.0-2.dsc: no acceptable signature found 87s autopkgtest [11:47:59]: testing package python-fabio version 2024.4.0-2 87s autopkgtest [11:47:59]: build not needed 87s autopkgtest [11:47:59]: test command1: preparing testbed 88s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Starting pkgProblemResolver with broken count: 0 89s Starting 2 pkgProblemResolver with broken count: 0 89s Done 89s The following additional packages will be installed: 89s blt fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 89s fonts-lyx libaec0 libavahi-client3 libavahi-common-data libavahi-common3 89s libblas3 libcups2t64 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 89s libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 89s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 89s libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 89s libhdf5-hl-100t64 libice6 libimagequant0 libinput-bin libinput10 libjbig0 89s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 89s liblcms2-2 liblerc4 liblzf1 libmd4c0 libmtdev1t64 libopenjp2-7 libpciaccess0 89s libpcre2-16-0 libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 89s libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5printsupport5t64 89s libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libraqm0 89s libsharpyuv0 libsm6 libsz2 libtcl8.6 libtiff6 libtk8.6 libvulkan1 89s libwacom-common libwacom9 libwayland-client0 libwayland-server0 libwebp7 89s libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 89s libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 89s libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 89s libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 89s libxcb-xkb1 libxfixes3 libxft2 libxkbcommon-x11-0 libxrender1 libxshmfence1 89s libxslt1.1 libxss1 libxxf86vm1 mesa-libgallium python-matplotlib-data 89s python3-all python3-appdirs python3-brotli python3-contourpy python3-cycler 89s python3-dateutil python3-decorator python3-fabio python3-fonttools 89s python3-fs python3-h5py python3-h5py-serial python3-kiwisolver python3-lxml 89s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 89s python3-packaging python3-pil python3-pil.imagetk python3-pyqt5 89s python3-pyqt5.sip python3-scipy python3-six python3-sympy python3-tk 89s python3-tz python3-ufolib2 python3.12-tk tk8.6-blt2.5 unicode-data 89s x11-common 89s Suggested packages: 89s blt-demo cups-common libjs-jquery-ui-docs liblcms2-utils libthai0 89s qgnomeplatform-qt5 qt5-image-formats-plugins tcl8.6 tk8.6 libwacom-bin 89s python-cycler-doc python-fabio-doc python-h5py-doc python-lxml-doc 89s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 89s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 89s python3-gi-cairo python3-gobject python3-sip python3-tornado 89s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 89s gfortran python-numpy-doc python3-dev python3-pytest python-pil-doc 89s python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 89s python3.13-tk 89s Recommended packages: 89s libgl1-amber-dri javascript-common qttranslations5-l10n libqt5svg5 89s qt5-gtk-platformtheme qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql 89s | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase 89s mesa-vulkan-drivers | vulkan-icd python3-bs4 python3-cssselect 89s python3-html5lib python3-olefile g++ | c++-compiler isympy-common 89s The following NEW packages will be installed: 89s autopkgtest-satdep blt fontconfig fontconfig-config fonts-dejavu-core 89s fonts-dejavu-mono fonts-lyx libaec0 libavahi-client3 libavahi-common-data 89s libavahi-common3 libblas3 libcups2t64 libdeflate0 libdouble-conversion3 89s libdrm-amdgpu1 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 89s libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 89s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 89s libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libimagequant0 libinput-bin 89s libinput10 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 89s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libmd4c0 libmtdev1t64 89s libopenjp2-7 libpciaccess0 libpcre2-16-0 libqhull-r8.0 libqt5core5t64 89s libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 89s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 89s libqt5xml5t64 libraqm0 libsharpyuv0 libsm6 libsz2 libtcl8.6 libtiff6 89s libtk8.6 libvulkan1 libwacom-common libwacom9 libwayland-client0 89s libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libx11-xcb1 89s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 89s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 89s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 89s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 89s libxft2 libxkbcommon-x11-0 libxrender1 libxshmfence1 libxslt1.1 libxss1 89s libxxf86vm1 mesa-libgallium python-matplotlib-data python3-all 89s python3-appdirs python3-brotli python3-contourpy python3-cycler 89s python3-dateutil python3-decorator python3-fabio python3-fonttools 89s python3-fs python3-h5py python3-h5py-serial python3-kiwisolver python3-lxml 89s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 89s python3-packaging python3-pil python3-pil.imagetk python3-pyqt5 89s python3-pyqt5.sip python3-scipy python3-six python3-sympy python3-tk 89s python3-tz python3-ufolib2 python3.12-tk tk8.6-blt2.5 unicode-data 89s x11-common 89s 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 91.3 MB/91.3 MB of archives. 89s After this operation, 381 MB of additional disk space will be used. 89s Get:1 /tmp/autopkgtest.7jScQ9/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [720 B] 89s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 90s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 90s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 90s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 90s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 90s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 90s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 90s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 90s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 90s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 90s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 90s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 90s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 90s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 90s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 90s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 90s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 90s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.10-1ubuntu2 [271 kB] 90s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 90s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 90s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 90s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 91s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 91s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 91s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB] 91s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 91s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.3-1ubuntu1 [42.4 kB] 91s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 91s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 91s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 91s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 91s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 91s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 91s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 91s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.3-1ubuntu1 [9904 kB] 91s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.3-1ubuntu1 [32.0 kB] 91s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB] 91s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 91s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.3-1ubuntu1 [129 kB] 91s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 91s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB] 91s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.3-1ubuntu1 [34.4 kB] 91s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 91s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 91s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 91s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.3-1ubuntu1 [153 kB] 91s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 92s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 92s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 92s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 92s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 92s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 92s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 92s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 92s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.13.0-1 [98.6 kB] 92s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.13.0-1 [25.1 kB] 92s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.26.2-1 [22.8 kB] 92s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [14.4 kB] 92s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.26.2-1 [137 kB] 92s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 92s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 92s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 92s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 92s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 92s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 92s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 92s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 92s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 92s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 92s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 92s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 92s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu1 [2036 kB] 92s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu1 [221 kB] 92s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 92s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 92s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 92s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 92s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu1 [724 kB] 92s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 92s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 92s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.0-1build3 [10.7 kB] 92s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 92s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.0-1build4 [7956 B] 92s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 92s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.9-1build4 [9608 B] 92s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 92s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 92s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 92s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 92s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1build1 [14.5 kB] 92s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu1 [3791 kB] 92s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu1 [2561 kB] 92s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-1ubuntu1 [124 kB] 92s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5designer5 amd64 5.15.15-2 [2827 kB] 93s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-1ubuntu1 [122 kB] 93s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5help5 amd64 5.15.15-2 [161 kB] 93s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-1ubuntu1 [208 kB] 93s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-1ubuntu1 [149 kB] 93s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 93s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 93s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 93s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 93s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 93s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 93s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 93s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 93s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 93s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 93s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 93s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 93s Get:114 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 94s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 94s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 94s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 94s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 94s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 94s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 94s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 94s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 94s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 94s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 94s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 94s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 94s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 94s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 95s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 95s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 95s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 95s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 95s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 95s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 95s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 95s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.6-1ubuntu1 [9806 B] 95s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 95s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 95s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 95s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.sip amd64 12.15.0-1build1 [78.3 kB] 95s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-1build1 [2726 kB] 95s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fabio amd64 2024.4.0-2 [629 kB] 96s Fetched 91.3 MB in 6s (15.6 MB/s) 96s Selecting previously unselected package libtcl8.6:amd64. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75575 files and directories currently installed.) 96s Preparing to unpack .../000-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 96s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 96s Selecting previously unselected package fonts-dejavu-mono. 96s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 96s Unpacking fonts-dejavu-mono (2.37-8) ... 96s Selecting previously unselected package fonts-dejavu-core. 96s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 96s Unpacking fonts-dejavu-core (2.37-8) ... 96s Selecting previously unselected package fontconfig-config. 96s Preparing to unpack .../003-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 96s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 96s Selecting previously unselected package libfontconfig1:amd64. 96s Preparing to unpack .../004-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 96s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 96s Selecting previously unselected package libxrender1:amd64. 96s Preparing to unpack .../005-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 96s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 96s Selecting previously unselected package libxft2:amd64. 96s Preparing to unpack .../006-libxft2_2.3.6-1build1_amd64.deb ... 96s Unpacking libxft2:amd64 (2.3.6-1build1) ... 96s Selecting previously unselected package x11-common. 96s Preparing to unpack .../007-x11-common_1%3a7.7+23ubuntu3_all.deb ... 96s Unpacking x11-common (1:7.7+23ubuntu3) ... 96s Selecting previously unselected package libxss1:amd64. 96s Preparing to unpack .../008-libxss1_1%3a1.2.3-1build3_amd64.deb ... 96s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 96s Selecting previously unselected package libtk8.6:amd64. 96s Preparing to unpack .../009-libtk8.6_8.6.15-1_amd64.deb ... 96s Unpacking libtk8.6:amd64 (8.6.15-1) ... 96s Selecting previously unselected package tk8.6-blt2.5. 96s Preparing to unpack .../010-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 96s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 96s Selecting previously unselected package blt. 96s Preparing to unpack .../011-blt_2.5.3+dfsg-7build1_amd64.deb ... 96s Unpacking blt (2.5.3+dfsg-7build1) ... 96s Selecting previously unselected package fontconfig. 96s Preparing to unpack .../012-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 96s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 96s Selecting previously unselected package fonts-lyx. 96s Preparing to unpack .../013-fonts-lyx_2.4.2.1-1_all.deb ... 96s Unpacking fonts-lyx (2.4.2.1-1) ... 96s Selecting previously unselected package libaec0:amd64. 96s Preparing to unpack .../014-libaec0_1.1.3-1_amd64.deb ... 96s Unpacking libaec0:amd64 (1.1.3-1) ... 96s Selecting previously unselected package libavahi-common-data:amd64. 96s Preparing to unpack .../015-libavahi-common-data_0.8-13ubuntu6_amd64.deb ... 96s Unpacking libavahi-common-data:amd64 (0.8-13ubuntu6) ... 96s Selecting previously unselected package libavahi-common3:amd64. 96s Preparing to unpack .../016-libavahi-common3_0.8-13ubuntu6_amd64.deb ... 96s Unpacking libavahi-common3:amd64 (0.8-13ubuntu6) ... 96s Selecting previously unselected package libavahi-client3:amd64. 96s Preparing to unpack .../017-libavahi-client3_0.8-13ubuntu6_amd64.deb ... 96s Unpacking libavahi-client3:amd64 (0.8-13ubuntu6) ... 96s Selecting previously unselected package libblas3:amd64. 96s Preparing to unpack .../018-libblas3_3.12.0-3build2_amd64.deb ... 96s Unpacking libblas3:amd64 (3.12.0-3build2) ... 96s Selecting previously unselected package libcups2t64:amd64. 96s Preparing to unpack .../019-libcups2t64_2.4.10-1ubuntu2_amd64.deb ... 96s Unpacking libcups2t64:amd64 (2.4.10-1ubuntu2) ... 96s Selecting previously unselected package libdeflate0:amd64. 96s Preparing to unpack .../020-libdeflate0_1.22-1_amd64.deb ... 96s Unpacking libdeflate0:amd64 (1.22-1) ... 96s Selecting previously unselected package libdouble-conversion3:amd64. 96s Preparing to unpack .../021-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 96s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 96s Selecting previously unselected package libdrm-amdgpu1:amd64. 96s Preparing to unpack .../022-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 96s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 96s Selecting previously unselected package libpciaccess0:amd64. 96s Preparing to unpack .../023-libpciaccess0_0.17-3build1_amd64.deb ... 96s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 96s Selecting previously unselected package libdrm-intel1:amd64. 96s Preparing to unpack .../024-libdrm-intel1_2.4.123-1_amd64.deb ... 96s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 96s Selecting previously unselected package libdrm-radeon1:amd64. 96s Preparing to unpack .../025-libdrm-radeon1_2.4.123-1_amd64.deb ... 96s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 96s Selecting previously unselected package libwayland-server0:amd64. 97s Preparing to unpack .../026-libwayland-server0_1.23.0-1_amd64.deb ... 97s Unpacking libwayland-server0:amd64 (1.23.0-1) ... 97s Selecting previously unselected package libxcb-randr0:amd64. 97s Preparing to unpack .../027-libxcb-randr0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libglapi-mesa:amd64. 97s Preparing to unpack .../028-libglapi-mesa_24.2.3-1ubuntu1_amd64.deb ... 97s Unpacking libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 97s Selecting previously unselected package libx11-xcb1:amd64. 97s Preparing to unpack .../029-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 97s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 97s Selecting previously unselected package libxcb-dri2-0:amd64. 97s Preparing to unpack .../030-libxcb-dri2-0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-dri3-0:amd64. 97s Preparing to unpack .../031-libxcb-dri3-0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-present0:amd64. 97s Preparing to unpack .../032-libxcb-present0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-sync1:amd64. 97s Preparing to unpack .../033-libxcb-sync1_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-xfixes0:amd64. 97s Preparing to unpack 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previously unselected package libjpeg-turbo8:amd64. 98s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 98s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 98s Selecting previously unselected package libjpeg8:amd64. 98s Preparing to unpack .../062-libjpeg8_8c-2ubuntu11_amd64.deb ... 98s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 98s Selecting previously unselected package libjs-jquery. 98s Preparing to unpack .../063-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 98s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 98s Selecting previously unselected package libjs-jquery-ui. 98s Preparing to unpack .../064-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 98s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 98s Selecting previously unselected package liblapack3:amd64. 98s Preparing to unpack .../065-liblapack3_3.12.0-3build2_amd64.deb ... 98s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 98s Selecting previously unselected package liblbfgsb0:amd64. 98s Preparing to 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100s Selecting previously unselected package python3-ufolib2. 100s Preparing to unpack .../119-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 100s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 100s Selecting previously unselected package python3-mpmath. 100s Preparing to unpack .../120-python3-mpmath_1.3.0-1_all.deb ... 100s Unpacking python3-mpmath (1.3.0-1) ... 100s Selecting previously unselected package python3-sympy. 100s Preparing to unpack .../121-python3-sympy_1.13.3-1_all.deb ... 100s Unpacking python3-sympy (1.13.3-1) ... 100s Selecting previously unselected package python3-tz. 100s Preparing to unpack .../122-python3-tz_2024.1-2_all.deb ... 100s Unpacking python3-tz (2024.1-2) ... 100s Selecting previously unselected package python3-fs. 100s Preparing to unpack .../123-python3-fs_2.4.16-4_all.deb ... 100s Unpacking python3-fs (2.4.16-4) ... 100s Selecting previously unselected package python3-lxml:amd64. 100s Preparing to unpack .../124-python3-lxml_5.3.0-1_amd64.deb ... 100s Unpacking python3-lxml:amd64 (5.3.0-1) ... 100s Selecting previously unselected package python3-lz4. 100s Preparing to unpack .../125-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 100s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 100s Selecting previously unselected package unicode-data. 100s Preparing to unpack .../126-unicode-data_15.1.0-1_all.deb ... 100s Unpacking unicode-data (15.1.0-1) ... 101s Selecting previously unselected package python3-fonttools. 101s Preparing to unpack .../127-python3-fonttools_4.46.0-1build2_amd64.deb ... 101s Unpacking python3-fonttools (4.46.0-1build2) ... 101s Selecting previously unselected package python3-h5py-serial. 101s Preparing to unpack .../128-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 101s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 101s Selecting previously unselected package python3-h5py. 101s Preparing to unpack .../129-python3-h5py_3.11.0-5ubuntu1_all.deb ... 101s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 101s Selecting previously unselected package python3-kiwisolver. 101s Preparing to unpack .../130-python3-kiwisolver_1.4.7-2build1_amd64.deb ... 101s Unpacking python3-kiwisolver (1.4.7-2build1) ... 101s Selecting previously unselected package libopenjp2-7:amd64. 101s Preparing to unpack .../131-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 101s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 101s Selecting previously unselected package python3-pil:amd64. 101s Preparing to unpack .../132-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 101s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 101s Selecting previously unselected package python3.12-tk. 101s Preparing to unpack .../133-python3.12-tk_3.12.7-3_amd64.deb ... 101s Unpacking python3.12-tk (3.12.7-3) ... 101s Selecting previously unselected package python3-tk:amd64. 101s Preparing to unpack .../134-python3-tk_3.12.6-1ubuntu1_amd64.deb ... 101s Unpacking python3-tk:amd64 (3.12.6-1ubuntu1) ... 101s Selecting previously unselected package python3-pil.imagetk:amd64. 101s Preparing to unpack .../135-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 101s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 101s Selecting previously unselected package python3-packaging. 101s Preparing to unpack .../136-python3-packaging_24.1-1_all.deb ... 101s Unpacking python3-packaging (24.1-1) ... 101s Selecting previously unselected package python3-matplotlib. 101s Preparing to unpack .../137-python3-matplotlib_3.8.3-3_amd64.deb ... 101s Unpacking python3-matplotlib (3.8.3-3) ... 101s Selecting previously unselected package python3-pyqt5.sip. 101s Preparing to unpack .../138-python3-pyqt5.sip_12.15.0-1build1_amd64.deb ... 101s Unpacking python3-pyqt5.sip (12.15.0-1build1) ... 101s Selecting previously unselected package python3-pyqt5. 101s Preparing to unpack .../139-python3-pyqt5_5.15.11+dfsg-1build1_amd64.deb ... 101s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 101s Selecting previously unselected package python3-fabio. 101s Preparing to unpack .../140-python3-fabio_2024.4.0-2_amd64.deb ... 101s Unpacking python3-fabio (2024.4.0-2) ... 101s Selecting previously unselected package autopkgtest-satdep. 101s Preparing to unpack .../141-1-autopkgtest-satdep.deb ... 101s Unpacking autopkgtest-satdep (0) ... 101s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 101s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 101s Setting up liblcms2-2:amd64 (2.16-2) ... 101s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 101s Setting up libwayland-server0:amd64 (1.23.0-1) ... 101s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 101s Setting up libpciaccess0:amd64 (0.17-3build1) ... 101s Setting up libdouble-conversion3:amd64 (3.3.0-1build1) ... 101s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 101s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 101s Setting up libxcb-xinput0:amd64 (1.17.0-2) ... 101s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 101s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 102s Setting up libxcb-render0:amd64 (1.17.0-2) ... 102s Setting up libdrm-radeon1:amd64 (2.4.123-1) ... 102s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 102s Setting up fonts-lyx (2.4.2.1-1) ... 102s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 102s Setting up libdrm-intel1:amd64 (2.4.123-1) ... 102s Setting up libxcb-keysyms1:amd64 (0.4.0-1build4) ... 102s Setting up libxcb-shape0:amd64 (1.17.0-2) ... 102s Setting up x11-common (1:7.7+23ubuntu3) ... 102s Setting up libdeflate0:amd64 (1.22-1) ... 102s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 102s Setting up libxcb-render-util0:amd64 (0.3.9-1build4) ... 102s Setting up python3-all (3.12.6-0ubuntu1) ... 102s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 102s Setting up libxcb-icccm4:amd64 (0.4.2-1) ... 102s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 102s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 102s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 102s Setting up libaec0:amd64 (1.1.3-1) ... 102s Setting up python3-tz (2024.1-2) ... 102s Setting up libxcb-util1:amd64 (0.4.0-1build3) ... 102s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 102s Setting up libxcb-xkb1:amd64 (1.17.0-2) ... 102s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 102s Setting up libxcb-present0:amd64 (1.17.0-2) ... 102s Setting up unicode-data (15.1.0-1) ... 102s Setting up python3-six (1.16.0-7) ... 102s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 102s Setting up python3-decorator (5.1.1-5) ... 102s Setting up libblas3:amd64 (3.12.0-3build2) ... 102s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 102s Setting up python3-packaging (24.1-1) ... 102s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ... 102s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 102s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 102s Setting up python3-brotli (1.1.0-2build2) ... 102s Setting up libavahi-common-data:amd64 (0.8-13ubuntu6) ... 102s Setting up liblzf1:amd64 (3.6-4) ... 102s Setting up python3-cycler (0.12.1-1) ... 103s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 103s Setting up libxkbcommon-x11-0:amd64 (1.6.0-1build1) ... 103s Setting up fonts-dejavu-mono (2.37-8) ... 103s Setting up python3-kiwisolver (1.4.7-2build1) ... 103s Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... 103s Setting up fonts-dejavu-core (2.37-8) ... 103s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 103s Setting up libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 103s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 103s Setting up libvulkan1:amd64 (1.3.296.0-1) ... 103s Setting up libwebp7:amd64 (1.4.0-0.1) ... 103s Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... 103s Setting up python3-pyqt5.sip (12.15.0-1build1) ... 103s Setting up libmtdev1t64:amd64 (1.1.6-1.2) ... 103s Setting up libxshmfence1:amd64 (1.3-1build5) ... 103s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 103s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 103s Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 103s Setting up libmd4c0:amd64 (0.5.2-2) ... 103s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 103s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 103s Setting up python3-dateutil (2.9.0-2) ... 103s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 103s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 103s Setting up python3-mpmath (1.3.0-1) ... 103s Setting up python-matplotlib-data (3.8.3-3) ... 103s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 103s Setting up python3-appdirs (1.4.4-4) ... 103s Setting up libsz2:amd64 (1.1.3-1) ... 103s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 103s Setting up libwacom-common (2.13.0-1) ... 103s Setting up libwayland-client0:amd64 (1.23.0-1) ... 103s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 103s Setting up python3-sympy (1.13.3-1) ... 108s Setting up libice6:amd64 (2:1.1.1-1) ... 108s Setting up mesa-libgallium:amd64 (24.2.3-1ubuntu1) ... 108s Setting up liblapack3:amd64 (3.12.0-3build2) ... 108s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 108s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 108s Setting up libgbm1:amd64 (24.2.3-1ubuntu1) ... 108s Setting up libwacom9:amd64 (2.13.0-1) ... 108s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 108s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 108s Setting up libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 108s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 108s Setting up libavahi-common3:amd64 (0.8-13ubuntu6) ... 108s Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 108s Setting up libqt5test5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 108s Setting up libinput-bin (1.26.2-1) ... 108s Setting up python3-fs (2.4.16-4) ... 108s Setting up libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 108s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 108s Setting up libraqm0:amd64 (0.10.1-1build1) ... 108s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 110s Setting up python3-lxml:amd64 (5.3.0-1) ... 110s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 110s Setting up libegl1:amd64 (1.7.0-1build1) ... 110s Setting up python3-contourpy (1.3.0-2) ... 110s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 110s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 110s Setting up libsm6:amd64 (2:1.2.4-1) ... 110s Setting up libavahi-client3:amd64 (0.8-13ubuntu6) ... 110s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 110s Setting up libinput10:amd64 (1.26.2-1) ... 110s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 110s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 112s Regenerating fonts cache... done. 112s Setting up libxft2:amd64 (2.3.6-1build1) ... 112s Setting up libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 112s Setting up python3-scipy (1.13.1-5) ... 115s Setting up libglx0:amd64 (1.7.0-1build1) ... 115s Setting up libtk8.6:amd64 (8.6.15-1) ... 115s Setting up python3.12-tk (3.12.7-3) ... 115s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 115s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 115s Setting up libgl1:amd64 (1.7.0-1build1) ... 115s Setting up python3-h5py (3.11.0-5ubuntu1) ... 115s Setting up libcups2t64:amd64 (2.4.10-1ubuntu2) ... 115s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 115s Setting up blt (2.5.3+dfsg-7build1) ... 115s Setting up python3-tk:amd64 (3.12.6-1ubuntu1) ... 115s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 115s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 115s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 115s Setting up libqt5help5:amd64 (5.15.15-2) ... 115s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 115s Setting up libqt5designer5:amd64 (5.15.15-2) ... 115s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 116s Setting up python3-fonttools (4.46.0-1build2) ... 116s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 116s Setting up python3-matplotlib (3.8.3-3) ... 118s Setting up python3-fabio (2024.4.0-2) ... 118s Setting up autopkgtest-satdep (0) ... 118s Processing triggers for libc-bin (2.40-1ubuntu3) ... 118s Processing triggers for man-db (2.13.0-1) ... 118s Processing triggers for udev (256.5-2ubuntu4) ... 124s (Reading database ... 84213 files and directories currently installed.) 124s Removing autopkgtest-satdep (0) ... 124s autopkgtest [11:48:36]: test command1: set -efu ; cp bootstrap.py pyproject.toml run_tests.py README.rst "$AUTOPKGTEST_TMP" ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py run_tests.py -v -m --installed ; done 124s autopkgtest [11:48:36]: test command1: [----------------------- 124s Testing with python3.12: 125s WARNING:run_tests:Test fabio 2024.4.0 from /usr/lib/python3/dist-packages/fabio 125s test_iter_abort_iteration (fabio.test.test_fabio_image.TestFabioImage.test_iter_abort_iteration) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestFabioImage.test_iter_abort_iteration 125s testcopy (fabio.test.test_fabio_image.Test50000.testcopy) 125s test the copy statement ... ok 125s INFO:memProf:Time: 0.006s RAM: 6.144 Mb fabio.test.test_fabio_image.Test50000.testcopy 125s testgetmax (fabio.test.test_fabio_image.Test50000.testgetmax) 125s check max ... ok 125s INFO:memProf:Time: 0.002s RAM: 0.968 Mb fabio.test.test_fabio_image.Test50000.testgetmax 125s testgetmean (fabio.test.test_fabio_image.Test50000.testgetmean) 125s check mean ... ok 125s INFO:memProf:Time: 0.004s RAM: 0.124 Mb fabio.test.test_fabio_image.Test50000.testgetmean 125s testgetmin (fabio.test.test_fabio_image.Test50000.testgetmin) 125s check min ... ok 125s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_fabio_image.Test50000.testgetmin 125s testgetstddev (fabio.test.test_fabio_image.Test50000.testgetstddev) 125s check stddev ... ok 125s INFO:memProf:Time: 0.006s RAM: 8.324 Mb fabio.test.test_fabio_image.Test50000.testgetstddev 125s testRebin (fabio.test.test_fabio_image.TestSlices.testRebin) 125s Test the rebin method ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testRebin 125s testgetmax (fabio.test.test_fabio_image.TestSlices.testgetmax) 125s check max ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testgetmax 125s testgetmin (fabio.test.test_fabio_image.TestSlices.testgetmin) 125s check min ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testgetmin 125s testintegratearea (fabio.test.test_fabio_image.TestSlices.testintegratearea) 125s check integrations ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestSlices.testintegratearea 125s testFlat (fabio.test.test_fabio_image.TestOpen.testFlat) 125s no compression ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testFlat 125s test_badtype (fabio.test.test_fabio_image.TestOpen.test_badtype) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.test_badtype 125s test_pathlib (fabio.test.test_fabio_image.TestOpen.test_pathlib) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.test_pathlib 125s testbz2 (fabio.test.test_fabio_image.TestOpen.testbz2) 125s bzipped ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testbz2 125s testgz (fabio.test.test_fabio_image.TestOpen.testgz) 125s gzipped ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio_image.TestOpen.testgz 125s testpil (fabio.test.test_fabio_image.TestPilImage.testpil) ... WARNING:fabio.DEPRECATION:Function toPIL16 is deprecated since fabio version 0.9. Reason: Not maintained. Use 'fabio.utils.pilutils.create_pil_16' instead. 125s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 209, in testpil 125s pim = img.toPIL16() 125s ok 125s INFO:memProf:Time: 0.029s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage.testpil 125s testpil (fabio.test.test_fabio_image.TestPilImage2.testpil) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py:232: RuntimeWarning: invalid value encountered in cast 125s return (numpy.random.random(shape) * sys.maxsize / 10).astype(typ) 125s 125s ok 125s INFO:memProf:Time: 0.030s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage2.testpil 125s testpil (fabio.test.test_fabio_image.TestPilImage3.testpil) ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py:240: RuntimeWarning: invalid value encountered in cast 125s return ((numpy.random.random(shape) - 0.5) * sys.maxsize / 10).astype(typ) 125s 125s ok 125s INFO:memProf:Time: 0.031s RAM: 0.000 Mb fabio.test.test_fabio_image.TestPilImage3.testpil 125s test_cleanup_pilimage_cache (fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_cleanup_pilimage_cache) ... WARNING:fabio.DEPRECATION:Function pilimage is deprecated. Reason: Setting pilimage not supported. This attrbute is not cached anymore. 125s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 257, in test_cleanup_pilimage_cache 125s image.pilimage = None 125s ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_cleanup_pilimage_cache 125s test_patch_dim (fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_patch_dim) ... WARNING:fabio.DEPRECATION:Function dim2 is deprecated. Reason: dim2 should not be updated. 125s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 249, in test_patch_dim 125s image.dim2, image.dim1 = data.shape 125s WARNING:fabio.DEPRECATION:Function dim1 is deprecated. Reason: dim1 should not be updated. 125s File "/usr/lib/python3/dist-packages/fabio/test/test_fabio_image.py", line 249, in test_patch_dim 125s image.dim2, image.dim1 = data.shape 125s ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_fabio_image.TestDeprecatedFabioImage.test_patch_dim 125s test_many_cases (fabio.test.test_filenames.TestFilenames.test_many_cases) 125s loop over CASES ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_many_cases 125s test_more_cases (fabio.test.test_filenames.TestFilenames.test_more_cases) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_more_cases 125s test_more_cases_jump (fabio.test.test_filenames.TestFilenames.test_more_cases_jump) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenames.test_more_cases_jump 125s test_FileNameObject_can_iterate (fabio.test.test_filenames.TestFilenameObjects.test_FileNameObject_can_iterate) 125s Regression test for Fable ... ok 125s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenameObjects.test_FileNameObject_can_iterate 125s test_files_are_being_opened (fabio.test.test_filenames.TestFilenameObjects.test_files_are_being_opened) 125s Regression test for Fable ... ok 125s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_filenames.TestFilenameObjects.test_files_are_being_opened 125s testfirst (fabio.test.test_file_series.TestRandomSeries.testfirst) 125s check first ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testfirst 125s testjump (fabio.test.test_file_series.TestRandomSeries.testjump) 125s check jump ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testjump 125s testlast (fabio.test.test_file_series.TestRandomSeries.testlast) 125s check first ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestRandomSeries.testlast 125s testfirst (fabio.test.test_file_series.TestEdfNumbered.testfirst) 125s first in series ... ok 125s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testfirst 125s testlast (fabio.test.test_file_series.TestEdfNumbered.testlast) 125s last in series ... ok 125s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testlast 125s testlen (fabio.test.test_file_series.TestEdfNumbered.testlen) 125s check len ... ok 125s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testlen 125s testnext (fabio.test.test_file_series.TestEdfNumbered.testnext) 125s check all in order ... ok 125s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testnext 125s testnextjump (fabio.test.test_file_series.TestEdfNumbered.testnextjump) 125s check current ... ok 125s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testnextjump 125s testprevious (fabio.test.test_file_series.TestEdfNumbered.testprevious) 125s check all in order ... ok 125s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testprevious 125s testprevjump (fabio.test.test_file_series.TestEdfNumbered.testprevjump) 125s check current ... ok 125s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestEdfNumbered.testprevjump 125s test_anyframe_frames (fabio.test.test_file_series.TestFileSeries.test_anyframe_frames) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_frames 125s test_anyframe_getframe (fabio.test.test_file_series.TestFileSeries.test_anyframe_getframe) ... ok 125s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_getframe 125s test_anyframe_getframes (fabio.test.test_file_series.TestFileSeries.test_anyframe_getframes) ... ok 125s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_getframes 125s test_anyframe_nframes (fabio.test.test_file_series.TestFileSeries.test_anyframe_nframes) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_nframes 125s test_anyframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_anyframe_nofiles) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_anyframe_nofiles 125s test_filename_generator (fabio.test.test_file_series.TestFileSeries.test_filename_generator) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_filename_generator 125s test_filename_iterator (fabio.test.test_file_series.TestFileSeries.test_filename_iterator) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_filename_iterator 125s test_multiframe_frames (fabio.test.test_file_series.TestFileSeries.test_multiframe_frames) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_frames 125s test_multiframe_getframe (fabio.test.test_file_series.TestFileSeries.test_multiframe_getframe) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_getframe 125s test_multiframe_nframes (fabio.test.test_file_series.TestFileSeries.test_multiframe_nframes) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_nframes 125s test_multiframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_multiframe_nofiles) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_multiframe_nofiles 125s test_singleframe_frames (fabio.test.test_file_series.TestFileSeries.test_singleframe_frames) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_frames 125s test_singleframe_getframe (fabio.test.test_file_series.TestFileSeries.test_singleframe_getframe) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_getframe 125s test_singleframe_nframes (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes 125s test_singleframe_nframes2 (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes2) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes2 125s test_singleframe_nframes3 (fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes3) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nframes3 125s test_singleframe_nofiles (fabio.test.test_file_series.TestFileSeries.test_singleframe_nofiles) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_singleframe_nofiles 125s test_with_filename_series (fabio.test.test_file_series.TestFileSeries.test_with_filename_series) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_with_filename_series 125s test_with_numbered_file_series (fabio.test.test_file_series.TestFileSeries.test_with_numbered_file_series) ... ok 125s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_file_series.TestFileSeries.test_with_numbered_file_series 125s test_next1 (fabio.test.test_filename_steps.TestNext.test_next1) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestNext.test_next1 125s test_prev1 (fabio.test.test_filename_steps.TestPrev.test_prev1) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestPrev.test_prev1 125s test_jump1 (fabio.test.test_filename_steps.TestJump.test_jump1) ... ok 125s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_filename_steps.TestJump.test_jump1 125s testheader (fabio.test.test_header_not_singleton.TestHeaderNotSingleton.testheader) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 126s INFO:fabio.utils.ExternalResources:Image mb_LP_1_001.img.bz2 successfully downloaded. 129s ok 129s INFO:memProf:Time: 3.786s RAM: 50.112 Mb fabio.test.test_header_not_singleton.TestHeaderNotSingleton.testheader 129s testcase (fabio.test.test_open_header.Test1.testcase) 129s check openheader can read edf headers ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675_header_only.edf.bz2') 129s INFO:fabio.utils.ExternalResources:Image F2K_Seb_Lyso0675_header_only.edf.bz2 successfully downloaded. 129s ok 129s INFO:memProf:Time: 0.144s RAM: 0.000 Mb fabio.test.test_open_header.Test1.testcase 129s testAdsc (fabio.test.test_open_image.TestOpenDtrek.testAdsc) 129s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 129s ok 129s INFO:memProf:Time: 0.076s RAM: 147.532 Mb fabio.test.test_open_image.TestOpenDtrek.testAdsc 129s testAdscBz2 (fabio.test.test_open_image.TestOpenDtrek.testAdscBz2) 129s openimage opening adsc bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 130s ok 130s INFO:memProf:Time: 1.272s RAM: 1.636 Mb fabio.test.test_open_image.TestOpenDtrek.testAdscBz2 130s testAdscGz (fabio.test.test_open_image.TestOpenDtrek.testAdscGz) 130s openimage opening adsc gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.gz') 130s ok 130s INFO:memProf:Time: 0.247s RAM: 13.108 Mb fabio.test.test_open_image.TestOpenDtrek.testAdscGz 130s testBruker (fabio.test.test_open_image.TestOpenBruker.testBruker) 130s openimage opening bruker ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 131s INFO:fabio.utils.ExternalResources:Image Cr8F8140k103.0026.bz2 successfully downloaded. 131s ok 131s INFO:memProf:Time: 0.485s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBruker 131s testBrukerBz2 (fabio.test.test_open_image.TestOpenBruker.testBrukerBz2) 131s openimage opening bruker bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 131s ok 131s INFO:memProf:Time: 0.041s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBrukerBz2 131s testBrukerGz (fabio.test.test_open_image.TestOpenBruker.testBrukerGz) 131s openimage opening bruker gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.gz') 131s ok 131s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenBruker.testBrukerGz 131s testEdf (fabio.test.test_open_image.TestOpenEdf.testEdf) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 132s INFO:fabio.utils.ExternalResources:Image F2K_Seb_Lyso0675.edf.bz2 successfully downloaded. 133s ok 133s INFO:memProf:Time: 1.764s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdf 133s testEdfBz2 (fabio.test.test_open_image.TestOpenEdf.testEdfBz2) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 134s ok 134s INFO:memProf:Time: 1.316s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdfBz2 134s testEdfGz (fabio.test.test_open_image.TestOpenEdf.testEdfGz) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.gz') 134s ok 134s INFO:memProf:Time: 0.192s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenEdf.testEdfGz 134s testMask (fabio.test.test_open_image.TestOpenMask.testMask) 134s openimage opening fit2d msk ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 134s INFO:fabio.utils.ExternalResources:Image face.msk.bz2 successfully downloaded. 134s ok 134s INFO:memProf:Time: 0.147s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMask 134s testMaskBz2 (fabio.test.test_open_image.TestOpenMask.testMaskBz2) 134s openimage opening fit2d msk bzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 134s ok 134s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMaskBz2 134s testMaskGz (fabio.test.test_open_image.TestOpenMask.testMaskGz) 134s openimage opening fit2d msk gzip ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.gz') 134s ok 134s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMask.testMaskGz 134s testMccd (fabio.test.test_open_image.TestOpenMccd.testMccd) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 135s INFO:fabio.utils.ExternalResources:Image somedata_0001.mccd.bz2 successfully downloaded. 135s ok 135s INFO:memProf:Time: 0.800s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccd 135s testMccdBz2 (fabio.test.test_open_image.TestOpenMccd.testMccdBz2) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 135s ok 135s INFO:memProf:Time: 0.132s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccdBz2 135s testMccdGz (fabio.test.test_open_image.TestOpenMccd.testMccdGz) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.gz') 135s ok 135s INFO:memProf:Time: 0.019s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenMccd.testMccdGz 135s testOxd (fabio.test.test_open_image.TestOpenOxd.testOxd) 135s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 136s INFO:fabio.utils.ExternalResources:Image b191_1_9_1.img.bz2 successfully downloaded. 136s ok 136s INFO:memProf:Time: 0.453s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenOxd.testOxd 136s testOxdUnc (fabio.test.test_open_image.TestOpenOxd.testOxdUnc) 136s openimage opening adsc ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 136s INFO:fabio.utils.ExternalResources:Image b191_1_9_1_uncompressed.img.bz2 successfully downloaded. 137s ok 137s INFO:memProf:Time: 1.397s RAM: 0.000 Mb fabio.test.test_open_image.TestOpenOxd.testOxdUnc 137s testComp (fabio.test.test_compression.TestByteOffset.testComp) ... ok 137s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_compression.TestByteOffset.testComp 137s testSC (fabio.test.test_compression.TestByteOffset.testSC) 137s test that datasets are unchanged after various compression/decompressions ... ok 137s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_compression.TestByteOffset.testSC 137s test_from_time (fabio.test.test_nexus.TestNexus.test_from_time) ... ok 137s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.test_nexus.TestNexus.test_from_time 137s test_nexus (fabio.test.test_nexus.TestNexus.test_nexus) 137s Test creation of Nexus files ... ok 137s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.test_nexus.TestNexus.test_nexus 137s testDefaultOption (fabio.test.test_fabio_convert.TestFabioConvert.testDefaultOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -F=msk -o=output 137s INFO:fabio.test.test_fabio_convert:Return code: 0 137s ok 137s INFO:memProf:Time: 0.194s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testDefaultOption 137s testForceOption (fabio.test.test_fabio_convert.TestFabioConvert.testForceOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -f -F=msk -o=output 138s INFO:fabio.test.test_fabio_convert:Return code: 0 138s ok 138s INFO:memProf:Time: 0.203s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testForceOption 138s testFullFormatName (fabio.test.test_fabio_convert.TestFabioConvert.testFullFormatName) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.* -F=numpyimage -o=output 138s INFO:fabio.test.test_fabio_convert:Return code: 0 138s ok 138s INFO:memProf:Time: 0.201s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testFullFormatName 138s testInteractiveOption (fabio.test.test_fabio_convert.TestFabioConvert.testInteractiveOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -n -i -F=msk -o=output 138s INFO:fabio.test.test_fabio_convert:Return code: 0 138s ok 138s INFO:memProf:Time: 0.204s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testInteractiveOption 138s testNoClobberOption (fabio.test.test_fabio_convert.TestFabioConvert.testNoClobberOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf -n -F=msk -o=output 138s INFO:fabio.test.test_fabio_convert:Return code: 0 138s ok 138s INFO:memProf:Time: 0.204s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testNoClobberOption 138s testRemoveDestinationOption (fabio.test.test_fabio_convert.TestFabioConvert.testRemoveDestinationOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf --remove-destination -F=msk -o=output 138s INFO:fabio.test.test_fabio_convert:Return code: 0 138s ok 138s INFO:memProf:Time: 0.202s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testRemoveDestinationOption 138s testSingleFile (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFile) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.edf -o=output/03.msk 139s INFO:fabio.test.test_fabio_convert:Return code: 0 139s ok 139s INFO:memProf:Time: 0.206s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFile 139s testSingleFileToDir (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileToDir) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.edf -F=msk -o=output 139s INFO:fabio.test.test_fabio_convert:Return code: 0 139s ok 139s INFO:memProf:Time: 0.200s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileToDir 139s testSingleFileWithWildcardToDir (fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileWithWildcardToDir) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/03.* -F=msk -o=output 139s INFO:fabio.test.test_fabio_convert:Return code: 0 139s ok 139s INFO:memProf:Time: 0.201s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testSingleFileWithWildcardToDir 139s testUpdateOption (fabio.test.test_fabio_convert.TestFabioConvert.testUpdateOption) ... INFO:fabio.test.test_fabio_convert:Execute: /usr/bin/python3.12 /usr/lib/python3/dist-packages/fabio/app/convert.py input/*.edf --update -F=msk -o=output 139s INFO:fabio.test.test_fabio_convert:Return code: 0 139s ok 139s INFO:memProf:Time: 0.197s RAM: 0.000 Mb fabio.test.test_fabio_convert.TestFabioConvert.testUpdateOption 139s test_missing_file (fabio.test.test_failing_files.TestFailingFiles.test_missing_file) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_missing_file 139s test_wrong_dm3 (fabio.test.test_failing_files.TestFailingFiles.test_wrong_dm3) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_dm3 139s test_wrong_edf (fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf 139s test_wrong_edf2 (fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf2) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_edf2 139s test_wrong_format (fabio.test.test_failing_files.TestFailingFiles.test_wrong_format) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_format 139s test_wrong_msk (fabio.test.test_failing_files.TestFailingFiles.test_wrong_msk) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_msk 139s test_wrong_numpy (fabio.test.test_failing_files.TestFailingFiles.test_wrong_numpy) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_failing_files.TestFailingFiles.test_wrong_numpy 139s test_annotation (fabio.test.test_formats.TestRegistration.test_annotation) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_annotation 139s test_deprecated_fabioimage_factory (fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory) 139s Check that it is still working ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory 139s test_deprecated_fabioimage_factory_missing_format (fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory_missing_format) 139s Check that it is still working ... ok 139s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_deprecated_fabioimage_factory_missing_format 139s test_fabio_factory (fabio.test.test_formats.TestRegistration.test_fabio_factory) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabio_factory 139s test_fabio_factory_missing_format (fabio.test.test_formats.TestRegistration.test_fabio_factory_missing_format) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabio_factory_missing_format 139s test_fabioformats_factory (fabio.test.test_formats.TestRegistration.test_fabioformats_factory) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabioformats_factory 139s test_fabioformats_factory_missing_format (fabio.test.test_formats.TestRegistration.test_fabioformats_factory_missing_format) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_fabioformats_factory_missing_format 139s test_function (fabio.test.test_formats.TestRegistration.test_function) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_function 139s test_not_existing (fabio.test.test_formats.TestRegistration.test_not_existing) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_formats.TestRegistration.test_not_existing 139s test_edf_to_tiff (fabio.test.test_image_convert.TestImageConvert.test_edf_to_tiff) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf') 139s INFO:fabio.utils.ExternalResources:Image face.edf.bz2 successfully downloaded. 139s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 139s ok 139s INFO:memProf:Time: 0.160s RAM: 0.000 Mb fabio.test.test_image_convert.TestImageConvert.test_edf_to_tiff 139s test_append (fabio.test.test_tiffio.TestTiffIO.test_append) ... ok 139s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_append 139s test_read (fabio.test.test_tiffio.TestTiffIO.test_read) ... INFO:fabio.test.test_tiffio:nRows = 100 139s INFO:fabio.test.test_tiffio:nColumns = 100 139s INFO:fabio.test.test_tiffio:nBits = 16 139s INFO:fabio.test.test_tiffio:compression = False 139s INFO:fabio.test.test_tiffio:compression_type = 1 139s INFO:fabio.test.test_tiffio:imageDescription = Title=1st 139s 139s INFO:fabio.test.test_tiffio:stripOffsets = [168] 139s INFO:fabio.test.test_tiffio:rowsPerStrip = 100 139s INFO:fabio.test.test_tiffio:stripByteCounts = [20000] 139s INFO:fabio.test.test_tiffio:software = PyMca.TiffIO 139s INFO:fabio.test.test_tiffio:date = Unknown Date 139s INFO:fabio.test.test_tiffio:sampleFormat = 1 139s INFO:fabio.test.test_tiffio:photometricInterpretation = 1 139s INFO:fabio.test.test_tiffio:info = {'Title': '1st'} 139s INFO:fabio.test.test_tiffio:data [0, 0:10] = [0 1 2 3 4 5 6 7 8 9] 139s ok 139s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_read 139s test_write (fabio.test.test_tiffio.TestTiffIO.test_write) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_tiffio.TestTiffIO.test_write 139s test_single_frame_iterator (fabio.test.test_frames.TestFabioImage.test_single_frame_iterator) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestFabioImage.test_single_frame_iterator 139s test_content (fabio.test.test_frames.TestVirtualEdf.test_content) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_content 139s test_frames_abort_iteration (fabio.test.test_frames.TestVirtualEdf.test_frames_abort_iteration) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_abort_iteration 139s test_frames_full_iteration (fabio.test.test_frames.TestVirtualEdf.test_frames_full_iteration) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_full_iteration 139s test_frames_random_access (fabio.test.test_frames.TestVirtualEdf.test_frames_random_access) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestVirtualEdf.test_frames_random_access 139s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 139s INFO:fabio.utils.ExternalResources:Image multiframes.edf.bz2 successfully downloaded. 139s test_content (fabio.test.test_frames.TestEdf.test_content) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_content 139s test_frames_abort_iteration (fabio.test.test_frames.TestEdf.test_frames_abort_iteration) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_abort_iteration 139s test_frames_full_iteration (fabio.test.test_frames.TestEdf.test_frames_full_iteration) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_full_iteration 139s test_frames_random_access (fabio.test.test_frames.TestEdf.test_frames_random_access) ... ok 139s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestEdf.test_frames_random_access 139s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.tif.bz2') 140s INFO:fabio.utils.ExternalResources:Image multiframes.tif.bz2 successfully downloaded. 140s test_content (fabio.test.test_frames.TestTiff.test_content) ... ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_content 140s test_frames_abort_iteration (fabio.test.test_frames.TestTiff.test_frames_abort_iteration) ... ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_abort_iteration 140s test_frames_full_iteration (fabio.test.test_frames.TestTiff.test_frames_full_iteration) ... ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_full_iteration 140s test_frames_random_access (fabio.test.test_frames.TestTiff.test_frames_random_access) ... ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_frames.TestTiff.test_frames_random_access 140s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.tif.bz2') 140s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s test_frames_abort_iteration (fabio.test.test_frames.TestFileSeries.test_frames_abort_iteration) ... ok 140s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_abort_iteration 140s test_frames_full_iteration (fabio.test.test_frames.TestFileSeries.test_frames_full_iteration) ... ok 140s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_full_iteration 140s test_frames_random_access (fabio.test.test_frames.TestFileSeries.test_frames_random_access) ... ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_frames.TestFileSeries.test_frames_random_access 140s test_open (fabio.test.test_fabio.TestFabio.test_open) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open 140s test_open_bytesio (fabio.test.test_fabio.TestFabio.test_open_bytesio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_bytesio 140s test_open_fabio_bytesio (fabio.test.test_fabio.TestFabio.test_open_fabio_bytesio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_fabio_bytesio 140s test_open_series (fabio.test.test_fabio.TestFabio.test_open_series) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series 140s test_open_series_first_filename (fabio.test.test_fabio.TestFabio.test_open_series_first_filename) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series_first_filename 140s test_open_series_with (fabio.test.test_fabio.TestFabio.test_open_series_with) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_series_with 140s test_open_with (fabio.test.test_fabio.TestFabio.test_open_with) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('multiframes.edf.bz2') 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_fabio.TestFabio.test_open_with 140s test_getstats (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_getstats) 140s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_getstats 140s test_headers (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_headers 140s test_read (fabio.test.codecs.test_edfimage.TestFlatEdfs.test_read) 140s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestFlatEdfs.test_read 140s test_getstats (fabio.test.codecs.test_edfimage.TestBzipEdf.test_getstats) 140s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.041s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_getstats 140s test_headers (fabio.test.codecs.test_edfimage.TestBzipEdf.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_headers 140s test_read (fabio.test.codecs.test_edfimage.TestBzipEdf.test_read) 140s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBzipEdf.test_read 140s test_getstats (fabio.test.codecs.test_edfimage.TestGzipEdf.test_getstats) 140s test statistics ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_getstats 140s test_headers (fabio.test.codecs.test_edfimage.TestGzipEdf.test_headers) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_headers 140s test_read (fabio.test.codecs.test_edfimage.TestGzipEdf.test_read) 140s check readable ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/im0000.edf (frame 0) misses mandatory keys: SIZE HEADERID 140s ok 140s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestGzipEdf.test_read 140s test_read (fabio.test.codecs.test_edfimage.TestEdfs.test_read) 140s check we can read these images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 140s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('id13_badPadding.edf.bz2') 140s INFO:fabio.utils.ExternalResources:Image id13_badPadding.edf.bz2 successfully downloaded. 141s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf Mean: exp=1504.29, obt=1504.291387796402 141s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf StdDev: exp=217.61, obt=217.60628547694915 142s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.bz2 Mean: exp=1504.29, obt=1504.291387796402 142s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.bz2 StdDev: exp=217.61, obt=217.60628547694915 142s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.gz Mean: exp=1504.29, obt=1504.291387796402 142s INFO:fabio.test.codecs.test_edfimage:F2K_Seb_Lyso0675.edf.gz StdDev: exp=217.61, obt=217.60628547694915 142s INFO:fabio.test.codecs.test_edfimage:id13_badPadding.edf Mean: exp=275.62, obt=275.6165885925293 142s INFO:fabio.test.codecs.test_edfimage:id13_badPadding.edf StdDev: exp=583.44, obt=583.4356660155632 142s ok 142s INFO:memProf:Time: 2.057s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfs.test_read 142s test_rebin (fabio.test.codecs.test_edfimage.TestEdfs.test_rebin) 142s test the rebin of edfdata ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('F2K_Seb_Lyso0675.edf.bz2') 142s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('id13_badPadding.edf.bz2') 142s ok 142s INFO:memProf:Time: 0.014s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfs.test_rebin 142s test_read (fabio.test.codecs.test_edfimage.TestEdfCompressedData.test_read) 142s check we can read these images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfGzip_U16.edf.bz2') 142s INFO:fabio.utils.ExternalResources:Image edfGzip_U16.edf.bz2 successfully downloaded. 143s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfCompressed_U16.edf.bz2') 143s INFO:fabio.utils.ExternalResources:Image edfCompressed_U16.edf.bz2 successfully downloaded. 144s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfUncompressed_U16.edf.bz2') 144s INFO:fabio.utils.ExternalResources:Image edfUncompressed_U16.edf.bz2 successfully downloaded. 147s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 147s INFO:fabio.edfimage:Data stream is padded : 8389062 > required 8388608 bytes 147s ok 147s INFO:memProf:Time: 4.968s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfCompressedData.test_read 147s test_getFrame_mono (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_mono) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 147s INFO:fabio.utils.ExternalResources:Image MultiFrame.edf.bz2 successfully downloaded. 149s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 150s INFO:fabio.utils.ExternalResources:Image MultiFrame-Frame0.edf.bz2 successfully downloaded. 151s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 152s INFO:fabio.utils.ExternalResources:Image MultiFrame-Frame1.edf.bz2 successfully downloaded. 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s ok 153s INFO:memProf:Time: 6.060s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_mono 153s test_getFrame_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s ok 153s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_getFrame_multi 153s test_next_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_next_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s ok 153s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_next_multi 153s test_openimage_multiframes (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_openimage_multiframes) 153s test if openimage can directly read first or second frame of a multi-frame ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s ok 153s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_openimage_multiframes 153s test_previous_mono (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_mono) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s ok 153s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_mono 153s test_previous_multi (fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_multi) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 153s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame1.edf.bz2') 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s ok 153s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfMultiFrame.test_previous_multi 153s test_fastread (fabio.test.codecs.test_edfimage.TestEdfFastRead.test_fastread) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame-Frame0.edf.bz2') 153s ok 153s INFO:memProf:Time: 0.240s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfFastRead.test_fastread 153s testBzip2 (fabio.test.codecs.test_edfimage.TestEdfWrite.testBzip2) ... ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testBzip2 153s testFlat (fabio.test.codecs.test_edfimage.TestEdfWrite.testFlat) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testFlat 153s testGzip (fabio.test.codecs.test_edfimage.TestEdfWrite.testGzip) ... ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfWrite.testGzip 153s test_bug_27 (fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_27) 153s import fabio ... ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_27 153s test_bug_459 (fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_459) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_bug_459 153s test_remove_metadata_header (fabio.test.codecs.test_edfimage.TestEdfRegression.test_remove_metadata_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf.bz2') 153s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 153s ok 153s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfRegression.test_remove_metadata_header 153s test_base (fabio.test.codecs.test_edfimage.TestBadFiles.test_base) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_base.edf (frame 0) misses mandatory keys: SIZE HEADERID 153s INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_base.edf (frame 1) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_base 153s test_empty (fabio.test.codecs.test_edfimage.TestBadFiles.test_empty) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_empty 153s test_full_frame_plus_half_header (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header.edf (frame 0) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_half_header 153s test_full_frame_plus_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 153s INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data.edf (frame 1) misses mandatory keys: SIZE HEADERID 153s ERROR:fabio.edfimage:Data stream is incomplete: 131072 < expected 262144 bytes 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_half_data 153s test_full_frame_plus_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 153s INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data.edf (frame 1) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_full_frame_plus_header_with_no_data 153s test_half_header (fabio.test.codecs.test_edfimage.TestBadFiles.test_half_header) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_half_header 153s test_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 153s ERROR:fabio.edfimage:Data stream is incomplete: 131072 < expected 262144 bytes 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_half_data 153s test_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadFiles/fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data.edf (frame 0) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_header_with_no_data 153s test_wrong_magic (fabio.test.codecs.test_edfimage.TestBadFiles.test_wrong_magic) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadFiles.test_wrong_magic 153s test_base (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 153s INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base.edf.gz (frame 1) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_base 153s test_empty (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_empty) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_empty 153s test_full_frame_plus_half_header (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_half_header 153s test_full_frame_plus_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 153s INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data.edf.gz (frame 1) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_half_data 153s test_full_frame_plus_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 153s INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data.edf.gz (frame 1) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_full_frame_plus_header_with_no_data 153s test_half_header (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_half_header) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_half_header 153s test_header_with_half_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_half_data 153s test_header_with_no_data (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data) ... INFO:fabio.edfimage:EDF file /tmp/fabio_qo8r08hm_ubuntu/TestBadGzFiles/fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data.edf.gz (frame 0) misses mandatory keys: SIZE HEADERID 153s ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_header_with_no_data 153s test_wrong_magic (fabio.test.codecs.test_edfimage.TestBadGzFiles.test_wrong_magic) ... ok 153s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestBadGzFiles.test_wrong_magic 153s test_multi_frame (fabio.test.codecs.test_edfimage.TestEdfIterator.test_multi_frame) 153s Test iterator on a multi-frame EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 153s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 154s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 154s INFO:fabio.edfimage:Data stream is padded : 4092928 > required 4092732 bytes 154s ok 154s INFO:memProf:Time: 0.595s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfIterator.test_multi_frame 154s test_single_frame (fabio.test.codecs.test_edfimage.TestEdfIterator.test_single_frame) 154s Test iterator on a single frame EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('edfCompressed_U16.edf') 154s ok 154s INFO:memProf:Time: 0.312s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfIterator.test_single_frame 154s test_all_images (fabio.test.codecs.test_edfimage.TestSphere2SaxsSamples.test_all_images) ... INFO:fabio.utils.ExternalResources:Image sphere2saxs_output.tar.bz2 successfully downloaded. 154s WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 154s fd.extractall(output) 154s 154s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 154s INFO:fabio.edfimage:Data stream is padded : 80484 > required 80000 bytes 154s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 154s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 154s INFO:fabio.edfimage:Data stream is padded : 80384 > required 80000 bytes 154s ok 154s INFO:memProf:Time: 0.502s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestSphere2SaxsSamples.test_all_images 154s testNonAsciiHeader (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testNonAsciiHeader) 154s Non-ascii characters are skipped. ... WARNING:fabio.edfimage:Non ASCII in key-value: Drop b'mykey' = b'\xc3\xa9yvalue' 154s ok 154s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testNonAsciiHeader 154s testReadBadPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadBadPadding) 154s Some old data were found with headers padded with 0xcd (issue #373) ... ok 154s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadBadPadding 154s testReadGoodPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadGoodPadding) ... ok 154s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadGoodPadding 154s testReadZeroPadding (fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadZeroPadding) ... ok 154s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_edfimage.TestEdfBadHeader.testReadZeroPadding 154s test_edf6_single_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edf6_single_raw_bf_gblk_gz) 155s Test reading gzipped data files linking to an external binary data file. ... INFO:fabio.utils.ExternalResources:Image ehf_images2.tar.bz2 successfully downloaded. 155s WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 155s fd.extractall(output) 155s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 155s ok 155s INFO:memProf:Time: 0.684s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edf6_single_raw_bf_gblk_gz 155s test_edfblocktypes (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfblocktypes) 155s Test reading (gzipped) extended edf multi frame data files with and without a general block ... INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2875 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2874 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2875 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2874 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 155s WARNING:fabio.compression.compression:Encounter the python-gzip bug with trailing garbage, trying subprocess gzip 155s INFO:fabio.edfimage:Data stream is padded : 2873 > required 2400 bytes 155s ok 155s INFO:memProf:Time: 0.116s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfblocktypes 155s test_edfmulti_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk) 155s Reading an uncompressed edf-multi-frame-file with references to data ... WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 155s fd.extractall(output) 155s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 155s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 155s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 155s ok 155s INFO:memProf:Time: 0.180s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk 155s test_edfmulti_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk_gz) 156s Test reading the files of the test test_edfmulti_raw_bf_gblk after ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 156s ok 156s INFO:memProf:Time: 0.196s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_bf_gblk_gz 156s test_edfmulti_raw_dark_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_dark_raw_bf_gblk) 156s Linking data of several frames to different parts of a single external ... INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 156s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 156s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0017 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0 s 156s INFO:fabio.edfimage:Data stream is padded : 29184 > required 28800 bytes 156s ok 156s INFO:memProf:Time: 0.089s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfmulti_raw_dark_raw_bf_gblk 156s test_edfsingle_raw_bf_gblk (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk) 156s Reading an uncompressed edf-single-frame-file with references to data ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 156s ok 156s INFO:memProf:Time: 0.087s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk 156s test_edfsingle_raw_bf_gblk_gz (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk_gz) 156s Test reading gzipped data files linking to an external binary data file. ... WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterClosingTime = 0.0045 s 156s WARNING:fabio.edfimage:Duplicated key: Drop ShutterOpeningTime = 0.0045 s 156s ok 156s INFO:memProf:Time: 0.088s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_edfsingle_raw_bf_gblk_gz 156s test_pitfalls (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_pitfalls) 156s multi5+headerblob_edf1.edf.gz ... INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s INFO:fabio.edfimage:Data stream is padded : 2560 > required 2400 bytes 156s ok 156s INFO:memProf:Time: 0.117s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_pitfalls 156s test_special (fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_special) 156s 09_special/face_ok.edf.gz ... INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_ok.edf.gz (frame 0) misses mandatory keys: SIZE 156s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_ok.edf.gz (frame 0) misses mandatory keys: SIZE 156s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary1.edf.gz (frame 0) misses mandatory keys: SIZE 156s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary1.edf.gz (frame 0) misses mandatory keys: SIZE 156s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary2.edf.gz (frame 0) misses mandatory keys: SIZE 156s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary2.edf.gz (frame 0) misses mandatory keys: SIZE 156s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary3.edf.gz (frame 0) misses mandatory keys: SIZE 156s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/ehf_images2.tar.bz2__content/00_edfblocktypes/../09_special/face_headerendatboundary3.edf.gz (frame 0) misses mandatory keys: SIZE 156s ok 156s INFO:memProf:Time: 0.094s RAM: 0.000 Mb fabio.test.codecs.test_edfimage_expg.EdfBlockBoundaryCases.test_special 156s test_bug_388 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_388) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 157s INFO:fabio.utils.ExternalResources:Image run2_1_00148.edf.bz2 successfully downloaded. 177s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 178s INFO:fabio.utils.ExternalResources:Image run2_1_00148.cbf.bz2 successfully downloaded. 178s ok 178s INFO:memProf:Time: 22.396s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_388 178s test_bug_408 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_408) 178s Bug when reading files generated by XDS ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 178s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 178s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XDS.cbf.bz2') 179s INFO:fabio.utils.ExternalResources:Image XDS.cbf.bz2 successfully downloaded. 180s ok 180s INFO:memProf:Time: 1.031s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_408 180s test_bug_528 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_528) 180s Bug when writing/reading small files ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 180s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 180s ok 180s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_528 180s test_bug_535 (fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_535) 180s Bug when reading files with long path in header ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 180s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 180s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('ref-test_5_0001.cbf') 180s INFO:fabio.utils.ExternalResources:Image ref-test_5_0001.cbf.bz2 successfully downloaded. 182s ok 182s INFO:memProf:Time: 2.714s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_bug_535 182s test_byte_offset (fabio.test.codecs.test_cbfimage.TestCbfReader.test_byte_offset) 182s check byte offset algorithm ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 182s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 182s INFO:fabio.test.codecs.test_cbfimage:Timing for Numpy method : 0.091s 182s INFO:fabio.test.codecs.test_cbfimage:Timing for Cython method : 0.010s, max delta= 0 182s ok 182s INFO:memProf:Time: 0.137s RAM: 4.780 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_byte_offset 182s test_cif (fabio.test.codecs.test_cbfimage.TestCbfReader.test_cif) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 182s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 182s ok 182s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_cif 182s test_consitency_convert (fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_convert) 182s Test if an image can be read and saved and the results are "similar" ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 182s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 182s ok 182s INFO:memProf:Time: 0.084s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_convert 182s test_consitency_manual (fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_manual) 182s Test if an image can be read and saved and the results are "similar" ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 182s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 183s ok 183s INFO:memProf:Time: 0.090s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_consitency_manual 183s test_read (fabio.test.codecs.test_cbfimage.TestCbfReader.test_read) 183s check whole reader ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 183s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 183s INFO:fabio.test.codecs.test_cbfimage:Reading CBF took 0.023s whereas the same EDF took 0.000s 183s ok 183s INFO:memProf:Time: 0.053s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_read 183s test_unicode (fabio.test.codecs.test_cbfimage.TestCbfReader.test_unicode) 183s Test if an image can be read and saved to an unicode named ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 183s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 183s ok 183s INFO:memProf:Time: 0.087s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_unicode 183s test_write (fabio.test.codecs.test_cbfimage.TestCbfReader.test_write) 183s Rest writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.edf.bz2') 183s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('run2_1_00148.cbf.bz2') 183s ok 183s INFO:memProf:Time: 0.090s RAM: 0.000 Mb fabio.test.codecs.test_cbfimage.TestCbfReader.test_write 183s testsame (fabio.test.codecs.test_dtrekimage.TestMatch.testsame) 183s test ADSC image match to EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 183s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.edf.bz2') 184s INFO:fabio.utils.ExternalResources:Image mb_LP_1_001.edf.bz2 successfully downloaded. 211s ok 211s INFO:memProf:Time: 28.308s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestMatch.testsame 211s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('HSA_1_5mg_C1_0004.img.bz2') 212s INFO:fabio.utils.ExternalResources:Image HSA_1_5mg_C1_0004.img.bz2 successfully downloaded. 213s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mb_LP_1_001.img.bz2') 213s test_read (fabio.test.codecs.test_dtrekimage.TestRealSamples.test_read) 213s check we can read flat ADSC images ... ok 213s INFO:memProf:Time: 0.712s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestRealSamples.test_read 213s test_write_and_read (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read) ... WARNING:fabio.dtrekimage:Data type uint64 unsupported. Store it as uint32. 213s WARNING:fabio.dtrekimage:Data type int64 unsupported. Store it as int32. 213s WARNING:fabio.dtrekimage:Data type float16 unsupported. Store it as float32. 213s ok 213s INFO:memProf:Time: 0.018s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read 213s test_write_and_read_cube (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_cube) ... ok 213s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_cube 213s test_write_and_read_empty (fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_empty) ... ok 213s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_dtrekimage.TestDtrekImplementation.test_write_and_read_empty 213s test_getmatch (fabio.test.codecs.test_fit2dmaskimage.TestFaceMask.test_getmatch) 213s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 213s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.edf.bz2') 213s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/face.edf (frame 0) misses mandatory keys: SIZE 213s ok 213s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestFaceMask.test_getmatch 213s test_getmatch (fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_getmatch) 213s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.msk.bz2') 214s INFO:fabio.utils.ExternalResources:Image fit2d_click.msk.bz2 successfully downloaded. 214s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.edf.bz2') 214s INFO:fabio.utils.ExternalResources:Image fit2d_click.edf.bz2 successfully downloaded. 214s INFO:fabio.edfimage:EDF file /tmp/fabio_testdata_ubuntu/fit2d_click.edf (frame 0) misses mandatory keys: SIZE 214s ok 214s INFO:memProf:Time: 0.315s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_getmatch 214s test_read (fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_read) 214s Check it reads a mask OK ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.msk.bz2') 214s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d_click.edf.bz2') 214s ok 214s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestClickedMask.test_read 214s testBzip2 (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testBzip2) ... ok 214s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testBzip2 214s testFlat (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testFlat) ... ok 214s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testFlat 214s testGzip (fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testGzip) ... ok 214s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_fit2dmaskimage.TestMskWrite.testGzip 214s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.spr.bz2') 214s INFO:fabio.utils.ExternalResources:Image example.spr.bz2 successfully downloaded. 215s test_read (fabio.test.codecs.test_fit2dspreadsheetimage.TestRealSamples.test_read) 219s check we can read flat ADSC images ... ok 219s INFO:memProf:Time: 3.599s RAM: 0.000 Mb fabio.test.codecs.test_fit2dspreadsheetimage.TestRealSamples.test_read 219s test_read (fabio.test.codecs.test_geimage.TestGE.test_read) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529.bz2') 220s INFO:fabio.utils.ExternalResources:Image GE_aSI_detector_image_1529.bz2 successfully downloaded. 222s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529.gz') 222s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_aSI_detector_image_1529') 224s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_image_1frame_intact_header.ge') 225s INFO:fabio.utils.ExternalResources:Image GE_image_1frame_intact_header.ge.bz2 successfully downloaded. 226s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('GE_image_1frame_blanked_header.ge') 227s INFO:fabio.utils.ExternalResources:Image GE_image_1frame_blanked_header.ge.bz2 successfully downloaded. 228s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('dark_before_000428.edf.ge5') 229s INFO:fabio.utils.ExternalResources:Image dark_before_000428.edf.ge5.bz2 successfully downloaded. 243s ok 243s INFO:memProf:Time: 23.754s RAM: 0.000 Mb fabio.test.codecs.test_geimage.TestGE.test_read 243s test_aux (fabio.test.codecs.test_mar345image.TestMar345.test_aux) 243s test auxillary functions ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 244s INFO:fabio.utils.ExternalResources:Image example.mar2300.bz2 successfully downloaded. 244s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 245s INFO:fabio.utils.ExternalResources:Image Fe3O4_023_101.mar2560.bz2 successfully downloaded. 245s ok 245s INFO:memProf:Time: 2.087s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_aux 245s test_byteswap_write (fabio.test.codecs.test_mar345image.TestMar345.test_byteswap_write) 245s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 245s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 248s ok 248s INFO:memProf:Time: 2.863s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_byteswap_write 248s test_memoryleak (fabio.test.codecs.test_mar345image.TestMar345.test_memoryleak) 248s This test takes a lot of time, so only in debug mode. ... skipped 'very slow test' 248s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_memoryleak 248s test_read (fabio.test.codecs.test_mar345image.TestMar345.test_read) 248s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 248s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 248s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300') 248s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 248s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.gz') 248s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560') 249s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 249s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.gz') 249s ok 249s INFO:memProf:Time: 1.490s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_read 249s test_write (fabio.test.codecs.test_mar345image.TestMar345.test_write) 249s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('example.mar2300.bz2') 249s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Fe3O4_023_101.mar2560.bz2') 252s ok 252s INFO:memProf:Time: 2.943s RAM: 0.000 Mb fabio.test.codecs.test_mar345image.TestMar345.test_write 252s test_read (fabio.test.codecs.test_brukerimage.TestBruker.test_read) 252s see if we can read the test image ... ok 252s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBruker.test_read 252s test_read (fabio.test.codecs.test_brukerimage.TestBzipBruker.test_read) 252s see if we can read the test image ... ok 252s INFO:memProf:Time: 0.020s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBzipBruker.test_read 252s test_read (fabio.test.codecs.test_brukerimage.TestGzipBruker.test_read) 252s see if we can read the test image ... ok 252s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestGzipBruker.test_read 252s test_read (fabio.test.codecs.test_brukerimage.TestRealImg.test_read) 252s check we can read bruker images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 252s ok 252s INFO:memProf:Time: 0.019s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestRealImg.test_read 252s test_write (fabio.test.codecs.test_brukerimage.TestRealImg.test_write) 252s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Cr8F8140k103.0026.bz2') 252s ok 252s INFO:memProf:Time: 0.118s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestRealImg.test_write 252s test_linear (fabio.test.codecs.test_brukerimage.TestBrukerLinear.test_linear) 252s test for self consistency of random data read/write ... WARNING:fabio.brukerimage:performing correction with slope=5.960449200869333e-08, offset=1.1008157e-06 (LINEAR=5.960449200869333e-08 1.1008157e-06) 252s ok 252s INFO:memProf:Time: 0.006s RAM: 0.000 Mb fabio.test.codecs.test_brukerimage.TestBrukerLinear.test_linear 252s test_conversion (fabio.test.codecs.test_bruker100image.TestBruker100.test_conversion) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 253s INFO:fabio.utils.ExternalResources:Image NaCl_10_01_0009.npy.bz2 successfully downloaded. 254s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 254s INFO:fabio.utils.ExternalResources:Image NaCl_10_01_0009.sfrm.bz2 successfully downloaded. 254s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('testcbf.cbf.bz2') 255s INFO:fabio.utils.ExternalResources:Image testcbf.cbf.bz2 successfully downloaded. 255s ok 255s INFO:memProf:Time: 2.222s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_conversion 255s test_read (fabio.test.codecs.test_bruker100image.TestBruker100.test_read) 255s check we can read bruker100 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 255s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 255s ok 255s INFO:memProf:Time: 0.018s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_read 255s test_same (fabio.test.codecs.test_bruker100image.TestBruker100.test_same) 255s check we can read bruker100 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 255s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 255s ok 255s INFO:memProf:Time: 0.056s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_same 255s test_split_merge (fabio.test.codecs.test_bruker100image.TestBruker100.test_split_merge) 255s Pretty challanging random example ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 255s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 255s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (65188,) overflow1 (100,) overflow2: (94,) 255s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (1565,) overflow1 (159,) overflow2: (94,) 255s INFO:fabio.test.codecs.test_bruker100image:size of underflow: (0,) overflow1 (1584,) overflow2: (1519,) 255s ok 255s INFO:memProf:Time: 0.006s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_split_merge 255s test_write (fabio.test.codecs.test_bruker100image.TestBruker100.test_write) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.npy.bz2') 255s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('NaCl_10_01_0009.sfrm.bz2') 255s ok 255s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_bruker100image.TestBruker100.test_write 255s test_read (fabio.test.codecs.test_mccdimage.TestFlatMccds.test_read) 255s check we can read MarCCD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('corkcont2_H_0089.mccd.bz2') 255s INFO:fabio.utils.ExternalResources:Image corkcont2_H_0089.mccd.bz2 successfully downloaded. 257s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('somedata_0001.mccd.bz2') 257s ok 257s INFO:memProf:Time: 2.684s RAM: 0.000 Mb fabio.test.codecs.test_mccdimage.TestFlatMccds.test_read 257s test_read_openimage (fabio.test.codecs.test_mccdimage.TestNormalTiffOK.test_read_openimage) ... ok 257s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_mccdimage.TestNormalTiffOK.test_read_openimage 257s test_read (fabio.test.codecs.test_oxdimage.TestOxd.test_read) 257s Test reading of compressed OXD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 257s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 257s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('100nmfilmonglass_1_1.img.bz2') 258s INFO:fabio.utils.ExternalResources:Image 100nmfilmonglass_1_1.img.bz2 successfully downloaded. 258s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus300k.rod_img.bz2') 258s INFO:fabio.utils.ExternalResources:Image pilatus300k.rod_img.bz2 successfully downloaded. 260s INFO:fabio.OXDimage:Compressed with the TY5 compression 260s INFO:fabio.OXDimage:TY5 decompression is slow for now 261s INFO:fabio.OXDimage:TY5: Exception: 16bits: 2844, 32bits: 0 261s ok 261s INFO:memProf:Time: 3.973s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxd.test_read 261s test_write (fabio.test.codecs.test_oxdimage.TestOxd.test_write) 261s Test writing with self consistency at the fabio level ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 261s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 261s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('100nmfilmonglass_1_1.img.bz2') 261s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus300k.rod_img.bz2') 261s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 261s INFO:fabio.OXDimage:Compressed with the TY5 compression 261s INFO:fabio.OXDimage:TY5 decompression is slow for now 263s INFO:fabio.OXDimage:TY5: Exception: 16bits: 2844, 32bits: 0 263s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 263s INFO:fabio.test.codecs.test_oxdimage:Skip write test for now 263s ok 263s INFO:memProf:Time: 1.752s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxd.test_write 263s test_same (fabio.test.codecs.test_oxdimage.TestOxdSame.test_same) 263s test if images are actually the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1.img.bz2') 263s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('b191_1_9_1_uncompressed.img.bz2') 263s ok 263s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxdSame.test_same 263s test_same (fabio.test.codecs.test_oxdimage.TestOxdBig.test_same) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('d80_60s.img.bz2') 264s INFO:fabio.utils.ExternalResources:Image d80_60s.img.bz2 successfully downloaded. 267s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('d80_60s.edf.bz2') 268s INFO:fabio.utils.ExternalResources:Image d80_60s.edf.bz2 successfully downloaded. 272s WARNING:fabio.edfimage:Unknown compression scheme TY1 272s ok 272s INFO:memProf:Time: 9.309s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestOxdBig.test_same 272s test_convert (fabio.test.codecs.test_oxdimage.TestConvert.test_convert) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('face.msk.bz2') 272s WARNING:fabio.OXDimage:Enforce TY1 compression 272s ok 272s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_oxdimage.TestConvert.test_convert 272s test_read (fabio.test.codecs.test_kcdimage.TestKcd.test_read) 272s check we can read kcd images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.kcd.bz2') 273s INFO:fabio.utils.ExternalResources:Image i01f0001.kcd.bz2 successfully downloaded. 274s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.edf.bz2') 274s INFO:fabio.utils.ExternalResources:Image i01f0001.edf.bz2 successfully downloaded. 277s ok 277s INFO:memProf:Time: 4.256s RAM: 0.000 Mb fabio.test.codecs.test_kcdimage.TestKcd.test_read 277s test_same (fabio.test.codecs.test_kcdimage.TestKcd.test_same) 277s see if we can read kcd images and if they are the same as the EDF ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.kcd.bz2') 277s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('i01f0001.edf.bz2') 277s ok 277s INFO:memProf:Time: 0.431s RAM: 0.000 Mb fabio.test.codecs.test_kcdimage.TestKcd.test_same 277s test_bug502 (fabio.test.codecs.test_tifimage.TestTif.test_bug502) 277s Test the reading of a frame with wrong Photometric interpretation ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('frame_00017.npy') 278s INFO:fabio.utils.ExternalResources:Image frame_00017.npy.bz2 successfully downloaded. 286s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('frame_00017.tif') 286s INFO:fabio.utils.ExternalResources:Image frame_00017.tif.bz2 successfully downloaded. 294s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 294s ok 294s INFO:memProf:Time: 17.119s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_bug502 294s test_frame (fabio.test.codecs.test_tifimage.TestTif.test_frame) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 295s INFO:fabio.utils.ExternalResources:Image Feb09-bright-00.300s_WAXS.bz2 successfully downloaded. 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s ok 295s INFO:memProf:Time: 1.134s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_frame 295s test_header (fabio.test.codecs.test_tifimage.TestTif.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s ok 295s INFO:memProf:Time: 0.099s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_header 295s test_read (fabio.test.codecs.test_tifimage.TestTif.test_read) 295s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.bz2') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS.gz') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 295s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Feb09-bright-00.300s_WAXS') 295s WARNING:fabio.TiffIO:Bogus StripByteCounts information 296s ok 296s INFO:memProf:Time: 0.107s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif.test_read 296s test1 (fabio.test.codecs.test_tifimage.TestGzipTif.test1) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.tif.bz2') 296s INFO:fabio.utils.ExternalResources:Image oPPA_5grains_0001.tif.bz2 successfully downloaded. 296s ok 296s INFO:memProf:Time: 0.336s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestGzipTif.test1 296s test1 (fabio.test.codecs.test_tifimage.TestTif_Rect.test1) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('testmap1_0002.tif.bz2') 296s INFO:fabio.utils.ExternalResources:Image testmap1_0002.tif.bz2 successfully downloaded. 296s ok 296s INFO:memProf:Time: 0.146s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Rect.test1 296s test1 (fabio.test.codecs.test_tifimage.TestTifImage_A0009.test1) 296s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('a0009.tif.bz2') 297s INFO:fabio.utils.ExternalResources:Image a0009.tif.bz2 successfully downloaded. 297s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('a0009.edf.bz2') 297s INFO:fabio.utils.ExternalResources:Image a0009.edf.bz2 successfully downloaded. 298s WARNING:fabio.TiffIO:Non standard TIFF. Rows per strip TAG missing 298s WARNING:fabio.TiffIO:Non standard TIFF. Strip byte counts TAG missing 298s ok 298s INFO:memProf:Time: 1.808s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_A0009.test1 298s test1 (fabio.test.codecs.test_tifimage.TestTifImage_fit2d.test1) 298s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 298s INFO:fabio.utils.ExternalResources:Image fit2d.tif.bz2 successfully downloaded. 298s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.edf.bz2') 298s INFO:fabio.utils.ExternalResources:Image fit2d.edf.bz2 successfully downloaded. 298s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 298s WARNING:fabio.edfimage:Unknown compression scheme FALSE 298s ok 298s INFO:memProf:Time: 0.305s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_fit2d.test1 298s test1 (fabio.test.codecs.test_tifimage.TestTifImage_Packbits.test1) 298s Testing packbit comressed data tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.tif.bz2') 298s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('oPPA_5grains_0001.edf.bz2') 298s INFO:fabio.utils.ExternalResources:Image oPPA_5grains_0001.edf.bz2 successfully downloaded. 299s ok 299s INFO:memProf:Time: 0.534s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_Packbits.test1 299s test1 (fabio.test.codecs.test_tifimage.TestTifImage_Pilatus.test1) 299s Testing pilatus tif bug ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus2M.tif.bz2') 299s INFO:fabio.utils.ExternalResources:Image pilatus2M.tif.bz2 successfully downloaded. 307s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('pilatus2M.edf.bz2') 308s INFO:fabio.utils.ExternalResources:Image pilatus2M.edf.bz2 successfully downloaded. 316s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 316s ok 316s INFO:memProf:Time: 17.609s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTifImage_Pilatus.test1 316s test_pil (fabio.test.codecs.test_tifimage.TestTif_Colormap.test_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('indexed_color.tif.bz2') 316s INFO:fabio.utils.ExternalResources:Image indexed_color.tif.bz2 successfully downloaded. 316s ok 316s INFO:memProf:Time: 0.178s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Colormap.test_pil 316s test_tiffio (fabio.test.codecs.test_tifimage.TestTif_Colormap.test_tiffio) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('indexed_color.tif.bz2') 316s WARNING:fabio.tifimage:Third dimension is the color 316s WARNING:fabio.tifimage:Third dimension is the color 316s WARNING:fabio.tifimage:Third dimension is the color 316s ok 316s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_Colormap.test_tiffio 317s test_all_images (fabio.test.codecs.test_tifimage.TestTif_LibTiffPic.test_all_images) ... INFO:fabio.utils.ExternalResources:Image libtiffpic.tar.gz successfully downloaded. 317s WARNING:py.warnings:/usr/lib/python3/dist-packages/fabio/utils/ExternalResources.py:214: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. 317s fd.extractall(output) 317s 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif with TiffIO due to Unsupported number of bits for unsigned int: (4, 4, 4), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-04.tif: no tiff reader managed to read the file. 317s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif with TiffIO due to could not broadcast input array from shape (10,640,3) into shape (15,640,3), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif with PIL: image file is truncated (1280 bytes not processed) 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/dscf0013.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif with TiffIO due to Unsupported number of bits for unsigned int: (10, 10, 10), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-10.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Third dimension is the color 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif with TiffIO due to Unsupported number of bits for unsigned int: (12, 12, 12), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-12.tif: no tiff reader managed to read the file. 317s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv32.tif: no tiff reader managed to read the file. 317s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_l16.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/zackthecat.tif with TiffIO due to 273 is not in list, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif with TiffIO due to Unsupported number of bits for unsigned int: (10, 10, 10), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-10.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-02.tif with TiffIO due to Unsupported number of bits for unsigned int: 2, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif with TiffIO due to Unsupported number of bits for unsigned int: (14, 14, 14), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-14.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-08.tif with TiffIO due to cannot reshape array of size 3139 into shape (73,3), trying PIL 317s WARNING:fabio.tifimage:Third dimension is the color 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif with TiffIO due to Unsupported number of bits for unsigned int: (12, 12, 12), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-12.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-04.tif with TiffIO due to Unsupported number of bits for unsigned int: 4, trying PIL 317s WARNING:fabio.tifimage:Third dimension is the color 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/ycbcr-cat.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif with TiffIO due to Unsupported number of bits for unsigned int: (14, 14, 14), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-14.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif with TiffIO due to Unsupported number of bits for unsigned int: 6, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-06.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/fax2d.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif with TiffIO due to Unsupported number of bits for unsigned int: 10, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-10.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-16.tif with TiffIO due to cannot reshape array of size 3139 into shape (73,3), trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/strike.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-08.tif with TiffIO due to Unsupported number of bits for unsigned int: (8, 8, 8, 8), trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif with TiffIO due to Unsupported number of bits for unsigned int: 12, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-12.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif with TiffIO due to cannot reshape array of size 65536 into shape (800), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif with PIL: image file is truncated (126 bytes not processed) 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/cramps-tile.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif with TiffIO due to %d format: a real number is required, not bytes, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-24.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/text.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s ThunderDecode: Not enough data at scanline 320 (0 != 1512). 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/smallliz.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/g3test.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif with TiffIO due to Unsupported number of bits for unsigned int: 14, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-14.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/oxford.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-08.tif with TiffIO due to Unsupported number of bits for unsigned int: (8, 8, 8, 8), trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-tile.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-lzw.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif with TiffIO due to %d format: a real number is required, not bytes, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-24.tif: no tiff reader managed to read the file. 317s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-16.tif with TiffIO due to Unsupported number of bits for unsigned int: (16, 16, 16, 16), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-16.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-16.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-contig-16.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/jim___ah.tif with TiffIO due to Unsupported number of bits for unsigned int: 1, trying PIL 317s WARNING:fabio.tifimage:Third dimension is the color 317s WARNING:fabio.tifimage:Third dimension is the color 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-palette-02.tif with TiffIO due to Unsupported number of bits for unsigned int: 2, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/caspian.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif with TiffIO due to Unsupported number of bits for unsigned int: (2, 2, 2), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-02.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Third dimension is the color 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-palette-04.tif with TiffIO due to Unsupported number of bits for unsigned int: 4, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif with TiffIO due to Unsupported number of bits for unsigned int: 24, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-minisblack-24.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif with TiffIO due to Unsupported number of bits for unsigned int: (4, 4, 4), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-contig-04.tif: no tiff reader managed to read the file. 317s WARNING:fabio.TiffIO:Data at tag id '37439' is smaller than expected 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/off_luv24.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/ladoga.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.TiffIO:Only grayscale and RGB images supported 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-16.tif with TiffIO due to Unsupported number of bits for unsigned int: (16, 16, 16, 16), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-16.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-16.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-separated-planar-16.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/quad-jpeg.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif with TiffIO due to Unsupported number of bits for unsigned int: (2, 2, 2), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-02.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif with TiffIO due to cannot reshape array of size 2044 into shape (73,3), trying PIL 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif with PIL: cannot identify image file <_io.FileIO name='/tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif' mode='rb' closefd=True> 317s ERROR:fabio.tifimage:Error in opening /tmp/fabio_testdata_ubuntu/libtiffpic.tar.gz__content/depth/flower-rgb-planar-32.tif: no tiff reader managed to read the file. 317s WARNING:fabio.tifimage:Third dimension is the color 317s ok 317s INFO:memProf:Time: 0.933s RAM: 0.000 Mb fabio.test.codecs.test_tifimage.TestTif_LibTiffPic.test_all_images 317s test_invert (fabio.test.codecs.test_xsdimage.TestXSD.test_invert) 317s Tests that 2 matrixes are invert ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 318s INFO:fabio.utils.ExternalResources:Image XSDataImage.edf.bz2 successfully downloaded. 319s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 319s INFO:fabio.utils.ExternalResources:Image XSDataImage.xml.bz2 successfully downloaded. 319s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 320s INFO:fabio.utils.ExternalResources:Image XSDataImageInv.xml.bz2 successfully downloaded. 320s ok 320s INFO:memProf:Time: 2.938s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_invert 320s test_read (fabio.test.codecs.test_xsdimage.TestXSD.test_read) 320s Test reading of XSD images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 320s INFO:fabio.test.codecs.test_xsdimage:XSDataImage.xml 667.15 667.1489268499176 320s INFO:fabio.test.codecs.test_xsdimage:XSDataImageInv.xml 0.01 0.010599090552568758 320s ok 320s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_read 320s test_same (fabio.test.codecs.test_xsdimage.TestXSD.test_same) 320s test if an image is the same as the EDF equivalent ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.edf.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImage.xml.bz2') 320s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('XSDataImageInv.xml.bz2') 320s ok 320s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_xsdimage.TestXSD.test_same 320s test_memoryleak (fabio.test.codecs.test_raxisimage.TestRaxisImage.test_memoryleak) 320s This test takes a lot of time, so only in debug mode. ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mgzn-20hpt.img.bz2') 321s INFO:fabio.utils.ExternalResources:Image mgzn-20hpt.img.bz2 successfully downloaded. 322s ok 322s INFO:memProf:Time: 1.242s RAM: 0.000 Mb fabio.test.codecs.test_raxisimage.TestRaxisImage.test_memoryleak 322s test_read (fabio.test.codecs.test_raxisimage.TestRaxisImage.test_read) 322s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mgzn-20hpt.img.bz2') 322s ok 322s INFO:memProf:Time: 0.489s RAM: 0.000 Mb fabio.test.codecs.test_raxisimage.TestRaxisImage.test_read 322s test_read (fabio.test.codecs.test_pnmimage.TestPNM.test_read) 322s check we can read pnm images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('image0001.pgm.bz2') 322s INFO:fabio.utils.ExternalResources:Image image0001.pgm.bz2 successfully downloaded. 322s ok 322s INFO:memProf:Time: 0.164s RAM: 0.000 Mb fabio.test.codecs.test_pnmimage.TestPNM.test_read 322s test_write (fabio.test.codecs.test_pnmimage.TestPNM.test_write) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('image0001.pgm.bz2') 322s ok 322s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pnmimage.TestPNM.test_write 322s test_multidim (fabio.test.codecs.test_numpyimage.TestNumpy.test_multidim) ... ok 322s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_multidim 322s test_read (fabio.test.codecs.test_numpyimage.TestNumpy.test_read) 322s check we can read pnm images ... ok 322s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_read 322s test_write (fabio.test.codecs.test_numpyimage.TestNumpy.test_write) 322s check we can write numpy images ... ok 322s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_numpyimage.TestNumpy.test_write 322s test_frame (fabio.test.codecs.test_pilatusimage.TestPilatus.test_frame) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 323s INFO:fabio.utils.ExternalResources:Image lysb_5mg-1.90s_SAXS.bz2 successfully downloaded. 324s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 324s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 325s ok 325s INFO:memProf:Time: 2.471s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_frame 325s test_header (fabio.test.codecs.test_pilatusimage.TestPilatus.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 325s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 325s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 325s ok 325s INFO:memProf:Time: 0.029s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_header 325s test_read (fabio.test.codecs.test_pilatusimage.TestPilatus.test_read) 325s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.bz2') 325s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS.gz') 325s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('lysb_5mg-1.90s_SAXS') 325s ok 325s INFO:memProf:Time: 0.031s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus.test_read 325s test_header (fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif.bz2') 325s INFO:fabio.utils.ExternalResources:Image Pilatus1M.tif.bz2 successfully downloaded. 325s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 325s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif') 326s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 326s ok 326s INFO:memProf:Time: 0.814s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_header 326s test_read (fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_read) 326s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif.bz2') 326s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 326s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.tif') 326s WARNING:fabio.tifimage:Unable to read /tmp/fabio_testdata_ubuntu/Pilatus1M.tif with TiffIO due to Compressed TIFF images not supported except packbits, trying PIL 326s ok 326s INFO:memProf:Time: 0.088s RAM: 0.000 Mb fabio.test.codecs.test_pilatusimage.TestPilatus1M.test_read 326s test_bug_479 (fabio.test.codecs.test_eigerimage.TestEiger.test_bug_479) ... WARNING:fabio.eigerimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 326s ok 326s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_bug_479 326s test_frames_abort_iteration (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_abort_iteration) ... ok 326s INFO:memProf:Time: 0.004s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_abort_iteration 326s test_frames_full_iteration (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_full_iteration) ... ok 326s INFO:memProf:Time: 0.008s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_full_iteration 326s test_frames_random_access (fabio.test.codecs.test_eigerimage.TestEiger.test_frames_random_access) ... ok 326s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_frames_random_access 326s test_open (fabio.test.codecs.test_eigerimage.TestEiger.test_open) 326s check we can read images from Eiger ... ok 326s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_open 326s test_read (fabio.test.codecs.test_eigerimage.TestEiger.test_read) 326s check we can read images from Eiger ... ok 326s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_read 326s test_write (fabio.test.codecs.test_eigerimage.TestEiger.test_write) ... WARNING:fabio.eigerimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 326s ok 326s INFO:memProf:Time: 0.012s RAM: 0.000 Mb fabio.test.codecs.test_eigerimage.TestEiger.test_write 326s test_iterate (fabio.test.codecs.test_hdf5image.TestHdf5.test_iterate) ... ok 326s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_iterate 326s test_next_frames (fabio.test.codecs.test_hdf5image.TestHdf5.test_next_frames) 326s check the legacy next API ... ok 326s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_next_frames 326s test_open (fabio.test.codecs.test_hdf5image.TestHdf5.test_open) 326s check we can read images from Eiger ... ok 326s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_open 326s test_read (fabio.test.codecs.test_hdf5image.TestHdf5.test_read) 326s check we can read images from Eiger ... ok 326s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_hdf5image.TestHdf5.test_read 326s test_mask (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_mask) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 326s INFO:fabio.utils.ExternalResources:Image fit2d.f2d.bz2 successfully downloaded. 326s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 326s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.f2d.bz2') 326s INFO:fabio.utils.ExternalResources:Image Pilatus1M.f2d.bz2 successfully downloaded. 329s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.cbf.bz2') 330s INFO:fabio.utils.ExternalResources:Image Pilatus1M.cbf.bz2 successfully downloaded. 330s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.msk.bz2') 330s INFO:fabio.utils.ExternalResources:Image Pilatus1M.msk.bz2 successfully downloaded. 330s ok 330s INFO:memProf:Time: 4.516s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_mask 330s test_match (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_match) 330s test edf and msk are the same ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 330s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 330s WARNING:fabio.TiffIO:TIFF file tag 270 contains non ASCII/UTF-8 characters. 330s ok 330s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_match 330s test_read (fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_read) 330s Check it reads a mask OK ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.f2d.bz2') 330s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('fit2d.tif.bz2') 330s ok 330s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_fit2dimage.TestFit2DImage.test_read 330s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v2.SPE.bz2') 331s INFO:fabio.utils.ExternalResources:Image v2.SPE.bz2 successfully downloaded. 331s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v2_converted.SPE.bz2') 331s INFO:fabio.utils.ExternalResources:Image v2_converted.SPE.bz2 successfully downloaded. 331s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3.spe.bz2') 332s INFO:fabio.utils.ExternalResources:Image v3.spe.bz2 successfully downloaded. 332s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3_custom_roi.spe.bz2') 332s INFO:fabio.utils.ExternalResources:Image v3_custom_roi.spe.bz2 successfully downloaded. 332s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('v3_2frames.spe.bz2') 333s INFO:fabio.utils.ExternalResources:Image v3_2frames.spe.bz2 successfully downloaded. 335s test_calibration (fabio.test.codecs.test_speimage.TestSpeImage.test_calibration) ... ok 335s INFO:memProf:Time: 0.016s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_calibration 335s test_center_wavelength (fabio.test.codecs.test_speimage.TestSpeImage.test_center_wavelength) ... ok 335s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_center_wavelength 335s test_detector (fabio.test.codecs.test_speimage.TestSpeImage.test_detector) ... ok 335s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_detector 335s test_exposure_time (fabio.test.codecs.test_speimage.TestSpeImage.test_exposure_time) ... ok 335s INFO:memProf:Time: 0.023s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_exposure_time 336s test_fabio_integration (fabio.test.codecs.test_speimage.TestSpeImage.test_fabio_integration) ... ok 336s INFO:memProf:Time: 0.112s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_fabio_integration 336s test_grating (fabio.test.codecs.test_speimage.TestSpeImage.test_grating) ... ok 336s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_grating 336s test_multiple_frames (fabio.test.codecs.test_speimage.TestSpeImage.test_multiple_frames) ... ok 336s INFO:memProf:Time: 0.022s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_multiple_frames 336s test_read_data (fabio.test.codecs.test_speimage.TestSpeImage.test_read_data) ... ok 336s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_read_data 336s test_reading_version2_spe (fabio.test.codecs.test_speimage.TestSpeImage.test_reading_version2_spe) ... ok 336s INFO:memProf:Time: 0.010s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_reading_version2_spe 336s test_roi (fabio.test.codecs.test_speimage.TestSpeImage.test_roi) ... ok 336s INFO:memProf:Time: 0.015s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_roi 336s test_time (fabio.test.codecs.test_speimage.TestSpeImage.test_time) ... ok 336s INFO:memProf:Time: 0.011s RAM: 0.000 Mb fabio.test.codecs.test_speimage.TestSpeImage.test_time 336s test_read_empty_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_empty_file) ... ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_empty_file 336s test_read_failing_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_failing_file) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 336s INFO:fabio.utils.ExternalResources:Image rand_uint8.jpg.bz2 successfully downloaded. 336s ok 336s INFO:memProf:Time: 0.140s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_failing_file 336s test_read_missing_file (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_missing_file) ... ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_missing_file 336s test_read_uint8 (fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 336s ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImage.test_read_uint8 336s test_read_uint8 (fabio.test.codecs.test_jpegimage.TestJpegImageInsideFabio.test_read_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 336s ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestJpegImageInsideFabio.test_read_uint8 336s test_with_pil (fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_with_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 336s ok 336s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_with_pil 336s test_without_pil (fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_without_pil) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('rand_uint8.jpg.bz2') 336s ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpegimage.TestPilNotAvailable.test_without_pil 336s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_missing_file) ... ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_missing_file 336s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 336s INFO:fabio.utils.ExternalResources:Image binned_data_uint16.jp2.bz2 successfully downloaded. 336s ok 336s INFO:memProf:Time: 0.231s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint16 336s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 336s INFO:fabio.utils.ExternalResources:Image binned_data_uint8.jp2.bz2 successfully downloaded. 336s ok 336s INFO:memProf:Time: 0.213s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_uint8 336s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_wrong_format) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 336s ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage.test_open_wrong_format 336s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_missing_file) ... ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_missing_file 336s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 336s ok 336s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint16 336s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 336s ok 336s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_uint8 336s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_wrong_format) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 336s ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_PIL.test_open_wrong_format 336s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_missing_file) ... skipped 'glymur is not available or too old' 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_missing_file 336s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint16) ... skipped 'glymur is not available or too old' 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint16 336s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint8) ... skipped 'glymur is not available or too old' 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_uint8 336s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_wrong_format) ... skipped 'glymur is not available or too old' 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_glymur.test_open_wrong_format 336s test_open_missing_file (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_missing_file) ... ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_missing_file 336s test_open_uint16 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint16) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint16.jp2.bz2') 336s ok 336s INFO:memProf:Time: 0.003s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint16 336s test_open_uint8 (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint8) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('binned_data_uint8.jp2.bz2') 336s ok 336s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 336s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 336s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/GE_aSI_detector_image_1529.bz2 rb 336s /tmp/fabio_testdata_ubuntu/GE_aSI_detector_image_1529.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/corkcont2_H_0089.mccd.bz2 rb 336s /tmp/fabio_testdata_ubuntu/corkcont2_H_0089.mccd.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.bz2 rb 336s /tmp/fabio_testdata_ubuntu/somedata_0001.mccd.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 336s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 336s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.bz2 rb 336s /tmp/fabio_testdata_ubuntu/Feb09-bright-00.300s_WAXS.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/oPPA_5grains_0001.tif.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/testmap1_0002.tif.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/testmap1_0002.tif.bz2 rb 336s /tmp/fabio_testdata_ubuntu/fit2d.tif.bz2 rb 336s /tmp/fabio_testdata_ubuntu/oPPA_5grains_0001.tif.bz2 rb 336s /tmp/fabio_testdata_ubuntu/pilatus2M.tif.bz2 rb 336s /tmp/fabio_testdata_ubuntu/indexed_color.tif.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/indexed_color.tif.bz2 rb 336s /tmp/fabio_testdata_ubuntu/indexed_color.tif.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/indexed_color.tif.bz2 rb 336s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 336s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 336s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.bz2 rb 336s /tmp/fabio_testdata_ubuntu/lysb_5mg-1.90s_SAXS.gz rb fabio. 336s /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 rb 336s /tmp/fabio_testdata_ubuntu/Pilatus1M.tif.bz2 rb 336s 0 336s 1 336s 2 336s 3 336s 4 336s 5 336s 6 336s 7 336s 8 336s 9 336s 10 336s 11 336s 12 336s 13 336s 14 336s 15 336s 16 336s 17 336s 18 336s 19 336s 20 336s 21 336s 22 336s 23 336s 24 336s 25 336s 26 336s 27 336s 28 336s 29 336s 30 336s 31 336s 32 336s 33 336s 34 336s 35 336s 36 336s 37 336s 38 336s 39 336s 40 336s 41 336s 42 336s 43 336s 44 336s 45 336s 46 336s 47 336s 48 336s 49 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: 336s jpeg2kimage.PIL: INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_uint8 336s test_open_wrong_format (fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_wrong_format) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('MultiFrame.edf.bz2') 336s ok 336s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_jpeg2kimage.TestJpeg2KImage_fabio.test_open_wrong_format 336s test_read (fabio.test.codecs.test_mpaimage.TestMpa.test_read) 336s Test the reading of multiwire images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('mpa_test.mpa.bz2') 337s INFO:fabio.utils.ExternalResources:Image mpa_test.mpa.bz2 successfully downloaded. 341s ok 341s INFO:memProf:Time: 4.756s RAM: 0.000 Mb fabio.test.codecs.test_mpaimage.TestMpa.test_read 341s test_read (fabio.test.codecs.test_dm3image.TestDm3Image.test_read) 341s check we can read dm3 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('ref_d20x_310mm.dm3.bz2') 342s INFO:fabio.utils.ExternalResources:Image ref_d20x_310mm.dm3.bz2 successfully downloaded. 346s ok 346s INFO:memProf:Time: 4.630s RAM: 0.000 Mb fabio.test.codecs.test_dm3image.TestDm3Image.test_read 346s test_read (fabio.test.codecs.test_mrcimage.TestMrc.test_read) 346s check we can read mrc images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.map.bz2') 346s INFO:fabio.utils.ExternalResources:Image EMD-3001.map.bz2 successfully downloaded. 346s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.mrc.bz2') 347s INFO:fabio.utils.ExternalResources:Image 0p67_5s_0000.mrc.bz2 successfully downloaded. 363s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.npy.bz2') 364s INFO:fabio.utils.ExternalResources:Image EMD-3001.npy.bz2 successfully downloaded. 364s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.npy.bz2') 364s INFO:fabio.utils.ExternalResources:Image 0p67_5s_0000.npy.bz2 successfully downloaded. 381s INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.mrcimage:Expected 'MAP ', got ok 381s INFO:memProf:Time: 35.873s RAM: 0.000 Mb fabio.test.codecs.test_mrcimage.TestMrc.test_read 381s test_same (fabio.test.codecs.test_mrcimage.TestMrc.test_same) 381s see if we can read mrc images and if they are the same as the numpy dump ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.map.bz2') 381s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.mrc.bz2') 381s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('EMD-3001.npy.bz2') 381s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('0p67_5s_0000.npy.bz2') 381s INFO:fabio.test.codecs.test_mrcimage:Comparing files EMD-3001.map and EMD-3001.npy 382s INFO:fabio.mrcimage:Expected 'MAP ', got INFO:fabio.test.codecs.test_mrcimage:Comparing files 0p67_5s_0000.mrc and 0p67_5s_0000.npy 382s ok 382s INFO:memProf:Time: 0.012s RAM: 0.000 Mb fabio.test.codecs.test_mrcimage.TestMrc.test_same 382s test_file_series (fabio.test.codecs.test_pixiimage.TestPixiImage.test_file_series) ... ok 382s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_file_series 382s test_frames_abort_iteration (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_abort_iteration) ... ok 382s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_abort_iteration 382s test_frames_full_iteration (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_full_iteration) ... ok 382s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_full_iteration 382s test_frames_random_access (fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_random_access) ... ok 382s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_frames_random_access 382s test_multi_frame (fabio.test.codecs.test_pixiimage.TestPixiImage.test_multi_frame) ... ok 382s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_multi_frame 382s test_single_frame (fabio.test.codecs.test_pixiimage.TestPixiImage.test_single_frame) ... ok 382s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.codecs.test_pixiimage.TestPixiImage.test_single_frame 382s test_data (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_data) ... INFO:fabio.esperantoimage:Esperanto accepts only integer data, rounding 382s INFO:fabio.esperantoimage:Padding image to be square, multiple of 4 and of size between 256 and 4096 382s ok 382s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_data 382s test_header (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_header) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('sucrose_1s__1_1.esperanto.bz2') 382s INFO:fabio.utils.ExternalResources:Image sucrose_1s__1_1.esperanto.bz2 successfully downloaded. 384s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_qo8r08hm_ubuntu/4bytes_long.esperanto 384s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_qo8r08hm_ubuntu/agi_bitfield.esperanto 385s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 385s INFO:fabio.utils.ExternalResources:Image reference.esperanto.bz2 successfully downloaded. 385s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_qo8r08hm_ubuntu/4bytes_long.esperanto 385s INFO:fabio.test.codecs.test_esperantoimage:Saving tmp file to /tmp/fabio_qo8r08hm_ubuntu/agi_bitfield.esperanto 385s ok 385s INFO:memProf:Time: 3.432s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_header 385s test_read (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_read) 385s Test the reading of Mar345 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('sucrose_1s__1_1.esperanto.bz2') 386s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 386s ok 386s INFO:memProf:Time: 1.142s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_read 386s test_values (fabio.test.codecs.test_esperantoimage.TestEsperanto.test_values) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.esperanto.bz2') 386s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('reference.npy.bz2') 386s INFO:fabio.utils.ExternalResources:Image reference.npy.bz2 successfully downloaded. 387s ok 387s INFO:memProf:Time: 0.483s RAM: 0.000 Mb fabio.test.codecs.test_esperantoimage.TestEsperanto.test_values 387s test_frames_abort_iteration (fabio.test.codecs.test_limaimage.TestLima.test_frames_abort_iteration) ... ok 387s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_abort_iteration 387s test_frames_full_iteration (fabio.test.codecs.test_limaimage.TestLima.test_frames_full_iteration) ... ok 387s INFO:memProf:Time: 0.002s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_full_iteration 387s test_frames_random_access (fabio.test.codecs.test_limaimage.TestLima.test_frames_random_access) ... ok 387s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_frames_random_access 387s test_identify (fabio.test.codecs.test_limaimage.TestLima.test_identify) ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('output_sparse_0_00000.h5') 388s INFO:fabio.utils.ExternalResources:Image output_sparse_0_00000.h5.bz2 successfully downloaded. 389s ok 389s INFO:memProf:Time: 2.375s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_identify 389s test_open (fabio.test.codecs.test_limaimage.TestLima.test_open) 389s test_open check we can read images from Lima ... ok 389s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_open 389s test_read (fabio.test.codecs.test_limaimage.TestLima.test_read) 389s test_read check we can read images from Lima ... ok 389s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_read 389s test_write (fabio.test.codecs.test_limaimage.TestLima.test_write) ... WARNING:fabio.limaimage:hdf5plugin is needed for bitshuffle-LZ4 compression, falling back on gzip (slower) 389s ok 389s INFO:memProf:Time: 0.009s RAM: 0.000 Mb fabio.test.codecs.test_limaimage.TestLima.test_write 389s test_read (fabio.test.codecs.test_hipicimage.TestHiPiCImage.test_read) 389s check we can read dm3 images ... INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Radiograph_SP8_BL47XU_HiPicimage.img.bz2') 390s INFO:fabio.utils.ExternalResources:Image Radiograph_SP8_BL47XU_HiPicimage.img.bz2 successfully downloaded. 392s ok 392s INFO:memProf:Time: 2.632s RAM: 0.000 Mb fabio.test.codecs.test_hipicimage.TestHiPiCImage.test_read 392s test_read (fabio.test.codecs.test_binaryimage.TestBinaryImage.test_read) 392s check we can read images from Eiger ... ok 392s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_binaryimage.TestBinaryImage.test_read 392s test_write (fabio.test.codecs.test_binaryimage.TestBinaryImage.test_write) ... ok 392s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.codecs.test_binaryimage.TestBinaryImage.test_write 392s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0001.ccd') 392s INFO:fabio.utils.ExternalResources:Image scan0001.ccd.bz2 successfully downloaded. 392s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0005.ccd') 392s INFO:fabio.utils.ExternalResources:Image scan0005.ccd.bz2 successfully downloaded. 392s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0050.ccd') 392s INFO:fabio.utils.ExternalResources:Image scan0050.ccd.bz2 successfully downloaded. 392s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0059.ccd') 392s INFO:fabio.utils.ExternalResources:Image scan0059.ccd.bz2 successfully downloaded. 392s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('scan0066.ccd') 392s INFO:fabio.utils.ExternalResources:Image scan0066.ccd.bz2 successfully downloaded. 392s test_parse (fabio.test.codecs.test_xcaliburimage.TestCcdCharacteristiscs.test_parse) ... ok 392s INFO:memProf:Time: 0.007s RAM: 0.000 Mb fabio.test.codecs.test_xcaliburimage.TestCcdCharacteristiscs.test_parse 392s INFO:fabio.utils.ExternalResources:UtilsTest.getimage('Pilatus1M.cbf') 392s test_decomposition (fabio.test.codecs.test_xcaliburimage.testXcalibureImage.test_decomposition) ... WARNING:fabio.test.codecs.test_xcaliburimage:PyFAI not available: only a coarse description of the mask is provided 392s WARNING:fabio.xcaliburimage:PyFAI not available: only a coarse description of the mask is provided 392s ok 392s INFO:memProf:Time: 0.005s RAM: 0.000 Mb fabio.test.codecs.test_xcaliburimage.testXcalibureImage.test_decomposition 392s test_compress_decode_field_overflow (fabio.test.test_agi_bitfield.TestUtil.test_compress_decode_field_overflow) ... ok 392s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_compress_decode_field_overflow 392s test_compress_decompress_field_small (fabio.test.test_agi_bitfield.TestUtil.test_compress_decompress_field_small) ... ok 392s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_compress_decompress_field_small 392s test_full_compress_decompress_field (fabio.test.test_agi_bitfield.TestUtil.test_full_compress_decompress_field) ... ok 392s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_full_compress_decompress_field 392s test_get_fieldsize (fabio.test.test_agi_bitfield.TestUtil.test_get_fieldsize) ... ok 392s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_get_fieldsize 392s test_mask_conv (fabio.test.test_agi_bitfield.TestUtil.test_mask_conv) ... ok 392s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestUtil.test_mask_conv 392s test_compress_row_small (fabio.test.test_agi_bitfield.TestRow.test_compress_row_small) ... ok 392s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestRow.test_compress_row_small 392s test_compress_row_zero (fabio.test.test_agi_bitfield.TestRow.test_compress_row_zero) ... ok 392s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestRow.test_compress_row_zero 392s test_full_rand (fabio.test.test_agi_bitfield.TestCompression.test_full_rand) ... ok 392s INFO:memProf:Time: 0.048s RAM: 0.000 Mb fabio.test.test_agi_bitfield.TestCompression.test_full_rand 393s test_cython (fabio.test.test_densification.TestDensification.test_cython) ... ok 393s INFO:memProf:Time: 0.058s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_cython 393s test_rng_normal (fabio.test.test_densification.TestDensification.test_rng_normal) ... ok 393s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_rng_normal 393s test_rng_uniform (fabio.test.test_densification.TestDensification.test_rng_uniform) ... 393s /tmp/fabio_qo8r08hm_ubuntu/lima3d.h5 393s /tmp/fabio_qo8r08hm_ubuntu/binary.npy 393s speed-up: 20.615479214806353 393s ##### 0 393s ##### 1 393s ##### 2 393s ##### 3 393s ##### 4 393s ##### 5 393s ##### 6 393s ##### 7 393s aaa [ ] 7% toto aaa [■■■■■■ ] 70% toto aaa [■■■■■■■■■■] 132% toto ok 393s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_densification.TestDensification.test_rng_uniform 393s setUpClass (fabio.test.test_io_limits.TestEdf) ... skipped 'test requires debug level logging' 393s setUpClass (fabio.test.test_io_limits.TestTiff) ... skipped 'test requires debug level logging' 393s test_coverage (fabio.test.test_utils_cli.TestUtilShell.test_coverage) 393s test function coverage ... ok 393s INFO:memProf:Time: 0.000s RAM: 0.000 Mb fabio.test.test_utils_cli.TestUtilShell.test_coverage 393s test_expand_args (fabio.test.test_utils_cli.TestUtilShell.test_expand_args) ... ok 393s INFO:memProf:Time: 0.001s RAM: 0.000 Mb fabio.test.test_utils_cli.TestUtilShell.test_expand_args 393s 393s ---------------------------------------------------------------------- 393s Ran 356 tests in 267.955s 393s 393s OK (skipped=7) 393s autopkgtest [11:53:05]: test command1: -----------------------] 393s command1 PASS 393s autopkgtest [11:53:05]: test command1: - - - - - - - - - - results - - - - - - - - - - 394s autopkgtest [11:53:06]: @@@@@@@@@@@@@@@@@@@@ summary 394s command1 PASS 405s virt: nova [W] Skipping flock for amd64 405s virt: Creating nova instance adt-plucky-amd64-python-fabio-20241115-114632-juju-7f2275-prod-proposed-migration-environment-2-0b747a57-3ed0-46f8-9cec-a1c723c5ec31 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...