0s autopkgtest [11:18:52]: starting date and time: 2024-11-13 11:18:52+0000 0s autopkgtest [11:18:52]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [11:18:52]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0pbkbg7f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-cutadapt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@lcy02-13.secgroup --name adt-plucky-amd64-python-cutadapt-20241113-111852-juju-7f2275-prod-proposed-migration-environment-20-c25dd9bb-3f49-437e-84c4-12e773fdf36e --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 65s autopkgtest [11:19:57]: testbed dpkg architecture: amd64 65s autopkgtest [11:19:57]: testbed apt version: 2.9.8 65s autopkgtest [11:19:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 65s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 65s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 65s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 65s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 65s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 65s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 65s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 65s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 65s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [639 kB] 65s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 65s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 66s Fetched 2175 kB in 0s (7392 kB/s) 66s Reading package lists... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 68s Calculating upgrade... 68s The following NEW packages will be installed: 68s python3.13-gdbm 68s The following packages will be upgraded: 68s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 68s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 253 kB of archives. 68s After this operation, 147 kB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 68s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 68s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 68s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 68s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 68s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 68s Fetched 253 kB in 0s (8087 kB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 69s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 69s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 69s Setting up python3-minimal (3.12.7-1) ... 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 69s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 69s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 69s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 69s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 69s Selecting previously unselected package python3.13-gdbm. 69s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 69s Unpacking python3.13-gdbm (3.13.0-2) ... 69s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 69s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 69s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 69s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 69s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 69s Setting up python3.13-gdbm (3.13.0-2) ... 69s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 69s Setting up python3 (3.12.7-1) ... 69s Setting up python3-gdbm:amd64 (3.12.7-1) ... 69s Processing triggers for man-db (2.12.1-3) ... 70s Processing triggers for libc-bin (2.40-1ubuntu3) ... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 71s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 71s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 71s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 72s Reading package lists... 72s Reading package lists... 72s Building dependency tree... 72s Reading state information... 73s Calculating upgrade... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s autopkgtest [11:20:07]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 75s autopkgtest [11:20:07]: @@@@@@@@@@@@@@@@@@@@ apt-source python-cutadapt 76s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-cutadapt 4.7-2 (dsc) [2484 B] 76s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-cutadapt 4.7-2 (tar) [243 kB] 76s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-cutadapt 4.7-2 (diff) [8856 B] 76s gpgv: Signature made Wed Mar 27 09:02:10 2024 UTC 76s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 76s gpgv: Can't check signature: No public key 76s dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found 76s autopkgtest [11:20:08]: testing package python-cutadapt version 4.7-2 77s autopkgtest [11:20:09]: build not needed 77s autopkgtest [11:20:09]: test pybuild-autopkgtest: preparing testbed 77s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Starting pkgProblemResolver with broken count: 0 78s Starting 2 pkgProblemResolver with broken count: 0 78s Done 79s The following additional packages will be installed: 79s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 79s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cutadapt cython3 debhelper 79s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 79s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 79s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 79s libarchive-zip-perl libasan8 libcc1-0 libdebhelper-perl libexpat1-dev 79s libfile-stripnondeterminism-perl libgcc-14-dev libgomp1 libhwasan0 libisl23 79s libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 79s libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 79s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libquadmath0 79s libstdc++-14-dev libtool libtsan2 libubsan1 m4 pigz po-debconf 79s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-all 79s python3-all-dev python3-build python3-cutadapt python3-dev python3-dnaio 79s python3-iniconfig python3-installer python3-packaging python3-pluggy 79s python3-pyproject-hooks python3-pytest python3-pytest-mock 79s python3-pytest-timeout python3-setuptools-scm python3-toml python3-wheel 79s python3-xopen python3.12-dev python3.13 python3.13-dev python3.13-minimal 79s zlib1g-dev 79s Suggested packages: 79s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 79s cpp-14-doc cython-doc dh-make flit g++-multilib g++-14-multilib gcc-14-doc 79s gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-14-multilib 79s gdb-x86-64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 79s libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc 79s libmail-box-perl python3-pip python3-venv python-build-doc 79s python-installer-doc python-pytest-mock-doc python3.13-venv python3.13-doc 79s binfmt-support 79s Recommended packages: 79s libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl 79s The following NEW packages will be installed: 79s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 79s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cutadapt cython3 79s debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ 79s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 79s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 79s libarchive-zip-perl libasan8 libcc1-0 libdebhelper-perl libexpat1-dev 79s libfile-stripnondeterminism-perl libgcc-14-dev libgomp1 libhwasan0 libisl23 79s libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblsan0 libmpc3 79s libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 79s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libquadmath0 79s libstdc++-14-dev libtool libtsan2 libubsan1 m4 pigz po-debconf 79s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-all 79s python3-all-dev python3-build python3-cutadapt python3-dev python3-dnaio 79s python3-iniconfig python3-installer python3-packaging python3-pluggy 79s python3-pyproject-hooks python3-pytest python3-pytest-mock 79s python3-pytest-timeout python3-setuptools-scm python3-toml python3-wheel 79s python3-xopen python3.12-dev python3.13 python3.13-dev python3.13-minimal 79s zlib1g-dev 79s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 95.5 MB/95.5 MB of archives. 79s After this operation, 341 MB of additional disk space will be used. 79s Get:1 /tmp/autopkgtest.UJo7Sb/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [856 B] 79s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 79s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 79s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 pigz amd64 2.8-1 [65.6 kB] 79s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 79s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 79s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 79s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 79s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 79s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 79s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 79s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 79s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 79s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 79s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 79s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 79s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 79s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 79s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 79s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 79s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 79s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 79s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 79s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 79s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 79s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 79s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 79s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 79s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 79s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 79s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 79s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 79s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 79s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 79s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 79s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-xopen all 1.7.0-2 [17.0 kB] 79s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dnaio amd64 1.2.2-1 [90.5 kB] 79s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cutadapt amd64 4.7-2 [183 kB] 79s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 cutadapt all 4.7-2 [6766 B] 79s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu1 [2491 kB] 79s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 79s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 80s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 80s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 80s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 80s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 80s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 80s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 80s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 80s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 80s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 80s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 80s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 80s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.2-2 [140 kB] 80s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 80s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 80s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 80s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 80s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 80s Get:60 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 80s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 80s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 80s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 80s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 80s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 80s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 80s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 80s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 80s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 80s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 80s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 80s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 80s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 80s Get:74 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 80s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 80s Get:76 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 80s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 80s Get:78 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 80s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 80s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 80s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 80s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-mock all 3.14.0-2 [11.7 kB] 80s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-timeout all 2.3.1-1 [22.1 kB] 80s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 80s Fetched 95.5 MB in 1s (97.1 MB/s) 80s Selecting previously unselected package libpython3.13-minimal:amd64. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 80s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 80s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 80s Selecting previously unselected package python3.13-minimal. 80s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 80s Unpacking python3.13-minimal (3.13.0-2) ... 80s Selecting previously unselected package pigz. 80s Preparing to unpack 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libpython3-all-dev:amd64 (3.12.7-1) ... 92s Setting up python3-dev (3.12.7-1) ... 92s Setting up cpp (4:14.1.0-2ubuntu1) ... 92s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 92s Setting up python3-all-dev (3.12.7-1) ... 92s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 92s Setting up cutadapt (4.7-2) ... 92s Setting up gcc-14 (14.2.0-8ubuntu1) ... 92s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 92s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 92s Setting up g++-14 (14.2.0-8ubuntu1) ... 92s Setting up libtool (2.4.7-7build1) ... 92s Setting up gcc (4:14.1.0-2ubuntu1) ... 92s Setting up dh-autoreconf (20) ... 92s Setting up g++ (4:14.1.0-2ubuntu1) ... 92s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 92s Setting up build-essential (12.10ubuntu1) ... 92s Setting up debhelper (13.20ubuntu1) ... 92s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 92s Setting up autopkgtest-satdep (0) ... 92s Processing triggers for systemd (256.5-2ubuntu4) ... 92s Processing triggers for man-db (2.12.1-3) ... 93s Processing triggers for install-info (7.1.1-1) ... 93s Processing triggers for libc-bin (2.40-1ubuntu3) ... 96s (Reading database ... 80177 files and directories currently installed.) 96s Removing autopkgtest-satdep (0) ... 96s autopkgtest [11:20:28]: test pybuild-autopkgtest: pybuild-autopkgtest 96s autopkgtest [11:20:28]: test pybuild-autopkgtest: [----------------------- 97s pybuild-autopkgtest 100s I: pybuild base:311: cd /tmp/autopkgtest.UJo7Sb/autopkgtest_tmp/build; python3.13 -m pytest tests 100s ImportError while loading conftest '/tmp/autopkgtest.UJo7Sb/autopkgtest_tmp/build/tests/conftest.py'. 100s tests/conftest.py:5: in 100s from cutadapt.cli import main 100s /usr/lib/python3/dist-packages/cutadapt/cli.py:67: in 100s import dnaio 100s /usr/lib/python3/dist-packages/dnaio/__init__.py:40: in 100s from ._core import ( 100s E ModuleNotFoundError: No module named 'dnaio._core' 100s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=4: cd /tmp/autopkgtest.UJo7Sb/autopkgtest_tmp/build; python3.13 -m pytest tests 100s I: pybuild base:311: cd /tmp/autopkgtest.UJo7Sb/autopkgtest_tmp/build; python3.12 -m pytest tests 101s ============================= test session starts ============================== 101s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 101s rootdir: /tmp/autopkgtest.UJo7Sb/autopkgtest_tmp/build 101s configfile: pyproject.toml 101s plugins: timeout-2.3.1, mock-3.14.0, typeguard-4.4.1 101s collected 669 items 101s 101s tests/test_adapters.py ......................................... [ 6%] 102s tests/test_align.py .................................................... [ 13%] 103s ... [ 14%] 103s tests/test_api.py ...... [ 15%] 105s tests/test_command.py ............ [ 17%] 106s tests/test_commandline.py .............................................. [ 23%] 109s ........................................................................ [ 34%] 110s .............................................................. [ 43%] 110s tests/test_files.py ......... [ 45%] 111s tests/test_kmer_finder.py .................... [ 48%] 111s tests/test_kmer_heuristic.py ............... [ 50%] 111s tests/test_main.py .... [ 51%] 111s tests/test_modifiers.py ....................................... [ 56%] 115s tests/test_paired.py ................................................... [ 64%] 116s ........................................................................ [ 75%] 118s ....................................................... [ 83%] 118s tests/test_parser.py ................................................. [ 90%] 118s tests/test_predicates.py ................. [ 93%] 118s tests/test_qualtrim.py ............................ [ 97%] 118s tests/test_report.py .. [ 97%] 118s tests/test_stats.py ... [ 98%] 118s tests/test_testutils.py .. [ 98%] 118s tests/test_tokenizer.py .. [ 98%] 118s tests/test_trim.py ... [ 99%] 118s tests/test_utils.py .... [100%] 118s 118s ============================= 669 passed in 17.71s ============================= 118s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 118s make: *** [/tmp/ynVBUtJTcv/run:4: pybuild-autopkgtest] Error 25 118s pybuild-autopkgtest: error: /tmp/ynVBUtJTcv/run pybuild-autopkgtest returned exit code 2 119s autopkgtest [11:20:51]: test pybuild-autopkgtest: -----------------------] 119s autopkgtest [11:20:51]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 119s pybuild-autopkgtest FAIL non-zero exit status 25 120s autopkgtest [11:20:52]: @@@@@@@@@@@@@@@@@@@@ summary 120s pybuild-autopkgtest FAIL non-zero exit status 25 148s nova [W] Skipping flock for amd64 148s Creating nova instance adt-plucky-amd64-python-cutadapt-20241113-111852-juju-7f2275-prod-proposed-migration-environment-20-c25dd9bb-3f49-437e-84c4-12e773fdf36e from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...