0s autopkgtest [11:43:35]: starting date and time: 2024-11-15 11:43:35+0000 0s autopkgtest [11:43:35]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [11:43:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.25mx6pz4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade python-bx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-25.secgroup --name adt-plucky-amd64-python-bx-20241115-114335-juju-7f2275-prod-proposed-migration-environment-2-7b7f5e57-809d-49c3-918c-a573bb3bfc78 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [11:45:27]: testbed dpkg architecture: amd64 112s autopkgtest [11:45:27]: testbed apt version: 2.9.8 112s autopkgtest [11:45:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 113s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.5 kB] 114s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 114s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1056 kB] 114s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 114s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 114s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [176 kB] 114s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 114s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [833 kB] 114s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [297 kB] 114s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 114s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 114s Fetched 2704 kB in 1s (3249 kB/s) 114s Reading package lists... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s Calculating upgrade... 117s The following packages will be upgraded: 117s firmware-sof-signed grub-common grub-pc grub-pc-bin grub2-common libcap-ng0 117s libexpat1 lxd-installer man-db pastebinit python3-systemd xfsprogs 117s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 13.6 MB of archives. 117s After this operation, 477 kB of additional disk space will be used. 117s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 118s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 grub2-common amd64 2.12-5ubuntu7 [672 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc amd64 2.12-5ubuntu7 [137 kB] 118s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc-bin amd64 2.12-5ubuntu7 [1127 kB] 118s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-common amd64 2.12-5ubuntu7 [2110 kB] 118s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 118s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 118s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 118s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 118s Preconfiguring packages ... 118s Fetched 13.6 MB in 1s (11.7 MB/s) 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 118s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 118s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 119s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 119s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 119s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 119s Preparing to unpack .../0-libexpat1_2.6.4-1_amd64.deb ... 119s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 119s Preparing to unpack .../1-man-db_2.13.0-1_amd64.deb ... 119s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 119s Preparing to unpack .../2-grub2-common_2.12-5ubuntu7_amd64.deb ... 119s Unpacking grub2-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 119s Preparing to unpack .../3-grub-pc_2.12-5ubuntu7_amd64.deb ... 119s Unpacking grub-pc (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 119s Preparing to unpack .../4-grub-pc-bin_2.12-5ubuntu7_amd64.deb ... 119s Unpacking grub-pc-bin (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 119s Preparing to unpack .../5-grub-common_2.12-5ubuntu7_amd64.deb ... 119s Unpacking grub-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 119s Preparing to unpack .../6-lxd-installer_9_all.deb ... 119s Unpacking lxd-installer (9) over (8) ... 119s Preparing to unpack .../7-pastebinit_1.7.1-1_all.deb ... 119s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 119s Preparing to unpack .../8-python3-systemd_235-1build5_amd64.deb ... 119s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 119s Preparing to unpack .../9-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 119s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 120s Setting up libexpat1:amd64 (2.6.4-1) ... 120s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 120s Setting up pastebinit (1.7.1-1) ... 120s Setting up man-db (2.13.0-1) ... 120s Updating database of manual pages ... 122s man-db.service is a disabled or a static unit not running, not starting it. 122s Setting up grub-common (2.12-5ubuntu7) ... 122s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 122s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 122s update-initramfs: deferring update (trigger activated) 123s Setting up lxd-installer (9) ... 123s Setting up python3-systemd (235-1build5) ... 123s Setting up grub2-common (2.12-5ubuntu7) ... 123s Setting up grub-pc-bin (2.12-5ubuntu7) ... 123s Setting up grub-pc (2.12-5ubuntu7) ... 123s Installing for i386-pc platform. 124s Installation finished. No error reported. 124s Sourcing file `/etc/default/grub' 124s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 124s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 124s Generating grub configuration file ... 124s Found linux image: /boot/vmlinuz-6.11.0-8-generic 124s Found initrd image: /boot/initrd.img-6.11.0-8-generic 124s Warning: os-prober will not be executed to detect other bootable partitions. 124s Systems on them will not be added to the GRUB boot configuration. 124s Check GRUB_DISABLE_OS_PROBER documentation entry. 124s Adding boot menu entry for UEFI Firmware Settings ... 124s done 124s Processing triggers for libc-bin (2.40-1ubuntu3) ... 124s Processing triggers for install-info (7.1.1-1) ... 124s Processing triggers for initramfs-tools (0.142ubuntu34) ... 124s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 124s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 133s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 133s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 133s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 134s Reading package lists... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Calculating upgrade... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s autopkgtest [11:45:50]: rebooting testbed after setup commands that affected boot 139s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 152s autopkgtest [11:46:07]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 155s autopkgtest [11:46:10]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bx 157s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (dsc) [2278 B] 157s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (tar) [1612 kB] 157s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bx 0.13.0-1 (diff) [13.8 kB] 157s gpgv: Signature made Sun Sep 22 12:26:19 2024 UTC 157s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 157s gpgv: issuer "tchet@debian.org" 157s gpgv: Can't check signature: No public key 157s dpkg-source: warning: cannot verify inline signature for ./python-bx_0.13.0-1.dsc: no acceptable signature found 157s autopkgtest [11:46:12]: testing package python-bx version 0.13.0-1 158s autopkgtest [11:46:13]: build not needed 158s autopkgtest [11:46:13]: test pybuild-autopkgtest: preparing testbed 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Starting pkgProblemResolver with broken count: 0 160s Starting 2 pkgProblemResolver with broken count: 0 160s Done 160s The following additional packages will be installed: 160s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 160s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 160s dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 160s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 160s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 160s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl 160s libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 160s libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc 160s libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev 160s libpython3-dev libpython3.12-dev libquadmath0 libstdc++-14-dev libtool 160s libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 160s pybuild-plugin-pyproject python3-all python3-all-dev python3-build 160s python3-bx python3-dev python3-iniconfig python3-installer python3-lzo 160s python3-numpy python3-packaging python3-pluggy python3-pyproject-hooks 160s python3-pytest python3-pytest-cython python3-toml python3-wheel 160s python3.12-dev zlib1g-dev 160s Suggested packages: 160s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 160s cpp-14-doc cython-doc dh-make flit g++-multilib g++-14-multilib gcc-14-doc 160s gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-14-multilib 160s gdb-x86-64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 160s libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc 160s libmail-box-perl python3-pip python3-venv python-build-doc 160s python-installer-doc gfortran python-numpy-doc 160s Recommended packages: 160s libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl 160s The following NEW packages will be installed: 160s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 160s cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper 160s debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14 160s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 160s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 160s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl 160s libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 160s libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc 160s libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev 160s libpython3-dev libpython3.12-dev libquadmath0 libstdc++-14-dev libtool 160s libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest 160s pybuild-plugin-pyproject python3-all python3-all-dev python3-build 160s python3-bx python3-dev python3-iniconfig python3-installer python3-lzo 160s python3-numpy python3-packaging python3-pluggy python3-pyproject-hooks 160s python3-pytest python3-pytest-cython python3-toml python3-wheel 160s python3.12-dev zlib1g-dev 160s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 91.7 MB/91.7 MB of archives. 160s After this operation, 343 MB of additional disk space will be used. 160s Get:1 /tmp/autopkgtest.KBHet1/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [836 B] 161s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 161s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 161s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 161s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 161s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 161s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 161s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 161s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 161s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 161s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 161s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 161s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 161s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 161s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 161s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 162s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 162s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 162s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 162s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 162s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 162s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 162s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 163s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 163s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 163s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 163s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 163s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 163s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 163s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 163s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 163s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 163s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu2 [3368 kB] 163s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 163s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 163s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 163s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 163s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 163s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 163s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 163s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 163s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 163s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 163s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 163s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 163s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 163s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 163s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 163s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 163s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 163s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 163s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 163s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 163s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 163s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 164s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.12.6-0ubuntu1 [10.2 kB] 164s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.12.6-0ubuntu1 [916 B] 164s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 164s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 164s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 164s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 164s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 164s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 164s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 164s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 164s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 164s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 164s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.12.6-0ubuntu1 [26.7 kB] 164s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.12.6-0ubuntu1 [908 B] 164s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lzo amd64 1.15-2build1 [9620 B] 164s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 164s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bx amd64 0.13.0-1 [811 kB] 164s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 164s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 164s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 164s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-cython all 0.3.1-1 [7270 B] 164s Fetched 91.7 MB in 3s (26.4 MB/s) 164s Selecting previously unselected package m4. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75575 files and directories currently installed.) 164s Preparing to unpack .../00-m4_1.4.19-4build1_amd64.deb ... 164s Unpacking m4 (1.4.19-4build1) ... 164s Selecting previously unselected package autoconf. 164s Preparing to unpack .../01-autoconf_2.72-3_all.deb ... 164s Unpacking autoconf (2.72-3) ... 164s Selecting previously unselected package autotools-dev. 164s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ... 164s Unpacking autotools-dev (20220109.1) ... 164s Selecting previously unselected package automake. 164s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 164s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 165s Selecting previously unselected package autopoint. 165s Preparing to unpack .../04-autopoint_0.22.5-2_all.deb ... 165s Unpacking autopoint (0.22.5-2) ... 165s Selecting previously unselected package libisl23:amd64. 165s Preparing to unpack .../05-libisl23_0.27-1_amd64.deb ... 165s Unpacking libisl23:amd64 (0.27-1) ... 165s Selecting previously unselected package libmpc3:amd64. 165s Preparing to unpack .../06-libmpc3_1.3.1-1build2_amd64.deb ... 165s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 165s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 165s Preparing to unpack .../07-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package cpp-14. 165s Preparing to unpack .../08-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package cpp-x86-64-linux-gnu. 165s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 165s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 165s Selecting previously unselected package cpp. 165s Preparing to unpack .../10-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 165s Unpacking cpp (4:14.1.0-2ubuntu1) ... 165s Selecting previously unselected package libcc1-0:amd64. 165s Preparing to unpack .../11-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libgomp1:amd64. 165s Preparing to unpack .../12-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libitm1:amd64. 165s Preparing to unpack .../13-libitm1_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libasan8:amd64. 165s Preparing to unpack .../14-libasan8_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package liblsan0:amd64. 165s Preparing to unpack .../15-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libtsan2:amd64. 165s Preparing to unpack .../16-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libubsan1:amd64. 165s Preparing to unpack .../17-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libhwasan0:amd64. 165s Preparing to unpack .../18-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libquadmath0:amd64. 165s Preparing to unpack .../19-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package libgcc-14-dev:amd64. 165s Preparing to unpack .../20-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 165s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 165s Preparing to unpack .../21-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 165s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 166s Selecting previously unselected package gcc-14. 166s Preparing to unpack .../22-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 166s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 166s Selecting previously unselected package gcc-x86-64-linux-gnu. 166s Preparing to unpack .../23-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 166s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 166s Selecting previously unselected package gcc. 166s Preparing to unpack .../24-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 166s Unpacking gcc (4:14.1.0-2ubuntu1) ... 166s Selecting previously unselected package libstdc++-14-dev:amd64. 166s Preparing to unpack .../25-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 166s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 166s Selecting previously unselected package g++-14-x86-64-linux-gnu. 166s Preparing to unpack .../26-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 166s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 166s Selecting previously unselected package g++-14. 166s Preparing to unpack .../27-g++-14_14.2.0-8ubuntu1_amd64.deb ... 166s Unpacking g++-14 (14.2.0-8ubuntu1) ... 166s Selecting previously unselected package g++-x86-64-linux-gnu. 166s Preparing to unpack .../28-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 166s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 166s Selecting previously unselected package g++. 166s Preparing to unpack .../29-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 166s Unpacking g++ (4:14.1.0-2ubuntu1) ... 166s Selecting previously unselected package build-essential. 166s Preparing to unpack .../30-build-essential_12.10ubuntu1_amd64.deb ... 166s Unpacking build-essential (12.10ubuntu1) ... 166s Selecting previously unselected package cython3. 166s Preparing to unpack .../31-cython3_3.0.11+dfsg-1ubuntu2_amd64.deb ... 166s Unpacking cython3 (3.0.11+dfsg-1ubuntu2) ... 166s Selecting previously unselected package libdebhelper-perl. 166s Preparing to unpack .../32-libdebhelper-perl_13.20ubuntu1_all.deb ... 166s Unpacking libdebhelper-perl (13.20ubuntu1) ... 166s Selecting previously unselected package libtool. 166s Preparing to unpack .../33-libtool_2.4.7-7build1_all.deb ... 166s Unpacking libtool (2.4.7-7build1) ... 166s Selecting previously unselected package dh-autoreconf. 166s Preparing to unpack .../34-dh-autoreconf_20_all.deb ... 166s Unpacking dh-autoreconf (20) ... 166s Selecting previously unselected package libarchive-zip-perl. 166s Preparing to unpack .../35-libarchive-zip-perl_1.68-1_all.deb ... 166s Unpacking libarchive-zip-perl (1.68-1) ... 166s Selecting previously unselected package libfile-stripnondeterminism-perl. 166s Preparing to unpack .../36-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 166s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 166s Selecting previously unselected package dh-strip-nondeterminism. 166s Preparing to unpack .../37-dh-strip-nondeterminism_1.14.0-1_all.deb ... 166s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 166s Selecting previously unselected package debugedit. 166s Preparing to unpack .../38-debugedit_1%3a5.1-1_amd64.deb ... 166s Unpacking debugedit (1:5.1-1) ... 166s Selecting previously unselected package dwz. 166s Preparing to unpack .../39-dwz_0.15-1build6_amd64.deb ... 166s Unpacking dwz (0.15-1build6) ... 166s Selecting previously unselected package gettext. 166s Preparing to unpack .../40-gettext_0.22.5-2_amd64.deb ... 166s Unpacking gettext (0.22.5-2) ... 166s Selecting previously unselected package intltool-debian. 166s Preparing to unpack .../41-intltool-debian_0.35.0+20060710.6_all.deb ... 166s Unpacking intltool-debian (0.35.0+20060710.6) ... 166s Selecting previously unselected package po-debconf. 166s Preparing to unpack .../42-po-debconf_1.0.21+nmu1_all.deb ... 166s Unpacking po-debconf (1.0.21+nmu1) ... 166s Selecting previously unselected package debhelper. 166s Preparing to unpack .../43-debhelper_13.20ubuntu1_all.deb ... 166s Unpacking debhelper (13.20ubuntu1) ... 166s Selecting previously unselected package dh-python. 167s Preparing to unpack .../44-dh-python_6.20241024_all.deb ... 167s Unpacking dh-python (6.20241024) ... 167s Selecting previously unselected package libblas3:amd64. 167s Preparing to unpack .../45-libblas3_3.12.0-3build2_amd64.deb ... 167s Unpacking libblas3:amd64 (3.12.0-3build2) ... 167s Selecting previously unselected package libexpat1-dev:amd64. 167s Preparing to unpack .../46-libexpat1-dev_2.6.4-1_amd64.deb ... 167s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 167s Selecting previously unselected package libgfortran5:amd64. 167s Preparing to unpack .../47-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 167s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 167s Selecting previously unselected package libjs-jquery. 167s Preparing to unpack .../48-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 167s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 167s Selecting previously unselected package libjs-underscore. 167s Preparing to unpack .../49-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 167s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 167s Selecting previously unselected package libjs-sphinxdoc. 167s Preparing to unpack .../50-libjs-sphinxdoc_7.4.7-4_all.deb ... 167s Unpacking libjs-sphinxdoc (7.4.7-4) ... 167s Selecting previously unselected package liblapack3:amd64. 167s Preparing to unpack .../51-liblapack3_3.12.0-3build2_amd64.deb ... 167s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 167s Selecting previously unselected package zlib1g-dev:amd64. 167s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 167s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 167s Selecting previously unselected package libpython3.12-dev:amd64. 167s Preparing to unpack .../53-libpython3.12-dev_3.12.7-3_amd64.deb ... 167s Unpacking libpython3.12-dev:amd64 (3.12.7-3) ... 167s Selecting previously unselected package libpython3-dev:amd64. 167s Preparing to unpack .../54-libpython3-dev_3.12.6-0ubuntu1_amd64.deb ... 167s Unpacking libpython3-dev:amd64 (3.12.6-0ubuntu1) ... 167s Selecting previously unselected package libpython3-all-dev:amd64. 167s Preparing to unpack .../55-libpython3-all-dev_3.12.6-0ubuntu1_amd64.deb ... 167s Unpacking libpython3-all-dev:amd64 (3.12.6-0ubuntu1) ... 167s Selecting previously unselected package pybuild-plugin-autopkgtest. 167s Preparing to unpack .../56-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 167s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 167s Selecting previously unselected package python3-packaging. 167s Preparing to unpack .../57-python3-packaging_24.1-1_all.deb ... 167s Unpacking python3-packaging (24.1-1) ... 167s Selecting previously unselected package python3-pyproject-hooks. 167s Preparing to unpack .../58-python3-pyproject-hooks_1.2.0-1_all.deb ... 167s Unpacking python3-pyproject-hooks (1.2.0-1) ... 167s Selecting previously unselected package python3-toml. 167s Preparing to unpack .../59-python3-toml_0.10.2-1_all.deb ... 167s Unpacking python3-toml (0.10.2-1) ... 167s Selecting previously unselected package python3-wheel. 167s Preparing to unpack .../60-python3-wheel_0.44.0-1_all.deb ... 167s Unpacking python3-wheel (0.44.0-1) ... 167s Selecting previously unselected package python3-build. 167s Preparing to unpack .../61-python3-build_1.2.2-1_all.deb ... 167s Unpacking python3-build (1.2.2-1) ... 167s Selecting previously unselected package python3-installer. 167s Preparing to unpack .../62-python3-installer_0.7.0+dfsg1-3_all.deb ... 167s Unpacking python3-installer (0.7.0+dfsg1-3) ... 167s Selecting previously unselected package pybuild-plugin-pyproject. 167s Preparing to unpack .../63-pybuild-plugin-pyproject_6.20241024_all.deb ... 167s Unpacking pybuild-plugin-pyproject (6.20241024) ... 167s Selecting previously unselected package python3-all. 167s Preparing to unpack .../64-python3-all_3.12.6-0ubuntu1_amd64.deb ... 167s Unpacking python3-all (3.12.6-0ubuntu1) ... 167s Selecting previously unselected package python3.12-dev. 167s Preparing to unpack .../65-python3.12-dev_3.12.7-3_amd64.deb ... 167s Unpacking python3.12-dev (3.12.7-3) ... 167s Selecting previously unselected package python3-dev. 167s Preparing to unpack .../66-python3-dev_3.12.6-0ubuntu1_amd64.deb ... 167s Unpacking python3-dev (3.12.6-0ubuntu1) ... 167s Selecting previously unselected package python3-all-dev. 167s Preparing to unpack .../67-python3-all-dev_3.12.6-0ubuntu1_amd64.deb ... 167s Unpacking python3-all-dev (3.12.6-0ubuntu1) ... 167s Selecting previously unselected package python3-lzo:amd64. 167s Preparing to unpack .../68-python3-lzo_1.15-2build1_amd64.deb ... 167s Unpacking python3-lzo:amd64 (1.15-2build1) ... 167s Selecting previously unselected package python3-numpy. 167s Preparing to unpack .../69-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 167s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 168s Selecting previously unselected package python3-bx. 168s Preparing to unpack .../70-python3-bx_0.13.0-1_amd64.deb ... 168s Unpacking python3-bx (0.13.0-1) ... 168s Selecting previously unselected package python3-iniconfig. 168s Preparing to unpack .../71-python3-iniconfig_1.1.1-2_all.deb ... 168s Unpacking python3-iniconfig (1.1.1-2) ... 168s Selecting previously unselected package python3-pluggy. 168s Preparing to unpack .../72-python3-pluggy_1.5.0-1_all.deb ... 168s Unpacking python3-pluggy (1.5.0-1) ... 168s Selecting previously unselected package python3-pytest. 168s Preparing to unpack .../73-python3-pytest_8.3.3-1_all.deb ... 168s Unpacking python3-pytest (8.3.3-1) ... 168s Selecting previously unselected package python3-pytest-cython. 168s Preparing to unpack .../74-python3-pytest-cython_0.3.1-1_all.deb ... 168s Unpacking python3-pytest-cython (0.3.1-1) ... 168s Selecting previously unselected package autopkgtest-satdep. 168s Preparing to unpack .../75-1-autopkgtest-satdep.deb ... 168s Unpacking autopkgtest-satdep (0) ... 168s Setting up dh-python (6.20241024) ... 168s Setting up python3-iniconfig (1.1.1-2) ... 168s Setting up libarchive-zip-perl (1.68-1) ... 168s Setting up libdebhelper-perl (13.20ubuntu1) ... 168s Setting up m4 (1.4.19-4build1) ... 168s Setting up python3-all (3.12.6-0ubuntu1) ... 168s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 168s Setting up python3-wheel (0.44.0-1) ... 168s Setting up autotools-dev (20220109.1) ... 168s Setting up libblas3:amd64 (3.12.0-3build2) ... 168s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 168s Setting up python3-packaging (24.1-1) ... 168s Setting up libexpat1-dev:amd64 (2.6.4-1) ... 168s Setting up python3-pyproject-hooks (1.2.0-1) ... 168s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 168s Setting up libmpc3:amd64 (1.3.1-1build2) ... 168s Setting up cython3 (3.0.11+dfsg-1ubuntu2) ... 169s Setting up autopoint (0.22.5-2) ... 169s Setting up python3-toml (0.10.2-1) ... 169s Setting up python3-installer (0.7.0+dfsg1-3) ... 169s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 169s Setting up autoconf (2.72-3) ... 169s Setting up python3-pluggy (1.5.0-1) ... 169s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 169s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 169s Setting up dwz (0.15-1build6) ... 169s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 169s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 169s Setting up debugedit (1:5.1-1) ... 169s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 169s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 169s Setting up libisl23:amd64 (0.27-1) ... 169s Setting up python3-build (1.2.2-1) ... 169s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 169s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 169s Setting up python3-lzo:amd64 (1.15-2build1) ... 169s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 169s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 169s Setting up automake (1:1.16.5-1.3ubuntu1) ... 169s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 169s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 169s Setting up liblapack3:amd64 (3.12.0-3build2) ... 169s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 169s Setting up gettext (0.22.5-2) ... 169s Setting up pybuild-plugin-pyproject (6.20241024) ... 169s Setting up python3-pytest (8.3.3-1) ... 170s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 170s Setting up intltool-debian (0.35.0+20060710.6) ... 170s Setting up python3.12-dev (3.12.7-3) ... 170s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 170s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 171s Setting up libjs-sphinxdoc (7.4.7-4) ... 171s Setting up cpp-14 (14.2.0-8ubuntu1) ... 171s Setting up dh-strip-nondeterminism (1.14.0-1) ... 171s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 171s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 171s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 171s Setting up python3-bx (0.13.0-1) ... 171s Setting up libpython3-dev:amd64 (3.12.6-0ubuntu1) ... 171s Setting up python3-pytest-cython (0.3.1-1) ... 171s Setting up po-debconf (1.0.21+nmu1) ... 171s Setting up libpython3-all-dev:amd64 (3.12.6-0ubuntu1) ... 171s Setting up python3-dev (3.12.6-0ubuntu1) ... 171s Setting up cpp (4:14.1.0-2ubuntu1) ... 171s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 171s Setting up python3-all-dev (3.12.6-0ubuntu1) ... 171s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 171s Setting up gcc-14 (14.2.0-8ubuntu1) ... 171s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 171s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 171s Setting up g++-14 (14.2.0-8ubuntu1) ... 171s Setting up libtool (2.4.7-7build1) ... 171s Setting up gcc (4:14.1.0-2ubuntu1) ... 171s Setting up dh-autoreconf (20) ... 171s Setting up g++ (4:14.1.0-2ubuntu1) ... 171s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 171s Setting up build-essential (12.10ubuntu1) ... 171s Setting up debhelper (13.20ubuntu1) ... 171s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 171s Setting up autopkgtest-satdep (0) ... 171s Processing triggers for man-db (2.13.0-1) ... 172s Processing triggers for install-info (7.1.1-1) ... 173s Processing triggers for libc-bin (2.40-1ubuntu3) ... 175s (Reading database ... 80220 files and directories currently installed.) 175s Removing autopkgtest-satdep (0) ... 176s autopkgtest [11:46:31]: test pybuild-autopkgtest: pybuild-autopkgtest 176s autopkgtest [11:46:31]: test pybuild-autopkgtest: [----------------------- 176s find lib -name "*_tests.py" >> debian/pybuild.testfiles 176s pybuild-autopkgtest 177s I: pybuild base:311: cd /tmp/autopkgtest.KBHet1/autopkgtest_tmp/build; python3.12 -m pytest 177s ============================= test session starts ============================== 177s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 177s rootdir: /tmp/autopkgtest.KBHet1/autopkgtest_tmp/build 177s configfile: pytest.ini 177s plugins: cython-0.3.1, typeguard-4.4.1 177s collected 132 items 177s 178s array_tree_tests.py ...... [ 4%] 178s bgzf_tests.py . [ 5%] 178s bigwig_tests.py ........................... [ 25%] 179s binned_array_tests.py .... [ 28%] 179s bitset_tests.py .................. [ 42%] 179s cdb_tests.py . [ 43%] 179s cluster_tests.py ............. [ 53%] 179s epo_tests.py ..... [ 56%] 179s fasta_tests.py . [ 57%] 179s fpconst_tests.py . [ 58%] 179s intersection_tests.py ............. [ 68%] 180s interval_index_file_tests.py ... [ 70%] 180s lav_tests.py . [ 71%] 180s maf_tests.py ........ [ 77%] 180s newick_tests.py ........ [ 83%] 180s nib_tests.py . [ 84%] 180s phast_tests.py . [ 84%] 180s pwm_tests.py . [ 85%] 180s qdna_tests.py . [ 86%] 180s score_tests.py ..... [ 90%] 180s seq_tests.py .... [ 93%] 180s sitemask_tests.py ... [ 95%] 180s transfac_tests.py . [ 96%] 180s twobit_tests.py ... [ 98%] 180s wiggle_tests.py .. [100%] 180s 180s =============================== warnings summary =============================== 180s ../../../../usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500 180s /usr/lib/python3/dist-packages/_pytest/config/__init__.py:1500: PytestConfigWarning: No files were found in testpaths; consider removing or adjusting your testpaths configuration. Searching recursively from the current directory instead. 180s self.args, self.args_source = self._decide_args( 180s 180s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n] 180s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 0.0206174 0.0278476 -0.0182009 0.00568736 0.000397305 0.13104 0.105984 -0.00662042 0.143469 0.111045 0.0322849 0.11452 0.0865186 0.055436 0.141388 0.103004 -0.00350213 0.053879 0.10582 0.0983312 -0.0351239 0.10085 0.110439 0.0451646 -0.00949231 0.0487825 0.042197 -0.00328549 -0.00851082 -0.0437525 0.0618735 -0.0315407 -0.00756448 -0.0523631 0.0432315 0.0228745 0.106009 0.0299314 0.0473805\n] 180s bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a n/a 0.0508425 0.0508425 -0.0768488 -0.189129 -0.439008 -0.182524 -0.304712 -0.197935 -0.462124 -0.194633 -0.2882 -0.0570346 -0.0724456 -0.301409 0.0508425 -0.0702441 -0.182524 0.0508425 0.0508425 -0.55459 0.0508425 0.0508425 0.0508425 0.0508425 0.00460946 -0.0152047 -0.0152047 -0.095562 -0.0570346 0.0695559 0.127898 0.000206554 -0.013003 0.0167182 -0.0559341 0.0508425 0.0904709 0.101479 -0.155005 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-----------------------] 181s pybuild-autopkgtest PASS 181s autopkgtest [11:46:36]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 181s autopkgtest [11:46:36]: @@@@@@@@@@@@@@@@@@@@ summary 181s pybuild-autopkgtest PASS 192s virt: nova [W] Skipping flock for amd64 192s virt: Creating nova instance adt-plucky-amd64-python-bx-20241115-114335-juju-7f2275-prod-proposed-migration-environment-2-7b7f5e57-809d-49c3-918c-a573bb3bfc78 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...