0s autopkgtest [21:37:44]: starting date and time: 2025-03-15 21:37:44+0000 0s autopkgtest [21:37:44]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:37:44]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r4cg6al0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-18.secgroup --name adt-plucky-amd64-pymol-20250315-213744-juju-7f2275-prod-proposed-migration-environment-2-30696ee6-93e2-4ce2-b6c5-5b2f2ebda584 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 50s autopkgtest [21:38:34]: testbed dpkg architecture: amd64 50s autopkgtest [21:38:34]: testbed apt version: 2.9.31ubuntu1 50s autopkgtest [21:38:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s autopkgtest [21:38:34]: testbed release detected to be: None 51s autopkgtest [21:38:35]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 52s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 52s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 52s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [44.1 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.7 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [67.4 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1852 B] 52s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 52s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [174 kB] 52s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [342 kB] 52s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.3 kB] 52s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 52s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 52s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 53s Fetched 1265 kB in 1s (1488 kB/s) 54s Reading package lists... 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 55s Calculating upgrade... 55s Calculating upgrade... 55s The following package was automatically installed and is no longer required: 55s libnl-genl-3-200 55s Use 'sudo apt autoremove' to remove it. 55s The following NEW packages will be installed: 55s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 55s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 55s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 55s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 55s The following packages will be upgraded: 55s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 55s cloud-init cloud-init-base curl dosfstools exfatprogs fwupd gcc-15-base 55s gir1.2-girepository-2.0 gir1.2-glib-2.0 htop hwdata initramfs-tools 55s initramfs-tools-bin initramfs-tools-core libapparmor1 libapt-pkg7.0 55s libassuan9 libatomic1 libaudit-common libaudit1 libbinutils libbrotli1 55s libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libctf-nobfd0 libctf0 55s libcurl3t64-gnutls libcurl4t64 libestr0 libftdi1-2 libfwupd3 libgcc-s1 55s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgpgme11t64 55s libgprofng0 libjemalloc2 liblz4-1 liblzma5 libmm-glib0 libncurses6 55s libncursesw6 libnewt0.52 libnl-3-200 libnl-genl-3-200 libnl-route-3-200 55s libnss-systemd libpam-systemd libparted2t64 libpci3 libpython3-stdlib 55s libpython3.13 libpython3.13-minimal libpython3.13-stdlib libseccomp2 55s libselinux1 libsemanage-common libsemanage2 libsframe1 libsqlite3-0 55s libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libudev1 libxml2 55s linux-firmware linux-generic linux-headers-generic linux-headers-virtual 55s linux-image-generic linux-image-virtual linux-libc-dev linux-tools-common 55s linux-virtual locales media-types ncurses-base ncurses-bin ncurses-term 55s parted pci.ids pciutils pinentry-curses python-apt-common python3 55s python3-apt python3-bcrypt python3-cffi-backend python3-dbus python3-gi 55s python3-jinja2 python3-lazr.uri python3-markupsafe python3-minimal 55s python3-newt python3-rpds-py python3-systemd python3-yaml python3.13 55s python3.13-gdbm python3.13-minimal rsync rsyslog strace systemd 55s systemd-cryptsetup systemd-resolved systemd-sysv systemd-timesyncd 55s ubuntu-kernel-accessories ubuntu-minimal ubuntu-standard udev whiptail 55s xz-utils 55s 126 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 829 MB of archives. 55s After this operation, 325 MB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 56s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 56s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 56s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 56s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250222-0ubuntu1 [10.4 kB] 56s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250222-0ubuntu1 [53.4 kB] 56s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250222-0ubuntu1 [77.8 kB] 56s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250222-0ubuntu1 [798 kB] 56s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 56s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 56s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 56s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd0 amd64 257.3-1ubuntu3 [595 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libnss-systemd amd64 257.3-1ubuntu3 [199 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-sysv amd64 257.3-1ubuntu3 [11.9 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-resolved amd64 257.3-1ubuntu3 [345 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-systemd amd64 257.3-1ubuntu3 [302 kB] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libsystemd-shared amd64 257.3-1ubuntu3 [2371 kB] 57s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd amd64 257.3-1ubuntu3 [3052 kB] 57s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-timesyncd amd64 257.3-1ubuntu3 [42.1 kB] 57s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 systemd-cryptsetup amd64 257.3-1ubuntu3 [124 kB] 57s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 udev amd64 257.3-1ubuntu3 [1404 kB] 57s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libudev1 amd64 257.3-1ubuntu3 [215 kB] 57s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 57s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 57s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 57s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu6 [53.5 kB] 57s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 57s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 57s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 57s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 57s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 57s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 57s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 57s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 57s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 57s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 57s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 57s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 57s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 57s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 57s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 57s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 57s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 57s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 57s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 57s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 57s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2.1build1 [7268 B] 57s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2.1build1 [106 kB] 57s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.2-2 [43.1 kB] 57s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 57s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 57s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 57s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 57s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 57s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 57s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-newt amd64 0.52.24-4ubuntu2 [21.1 kB] 57s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libnewt0.52 amd64 0.52.24-4ubuntu2 [55.7 kB] 57s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 57s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 57s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 57s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 58s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 58s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 58s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 58s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 58s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 whiptail amd64 0.52.24-4ubuntu2 [19.1 kB] 58s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-minimal amd64 1.549 [11.5 kB] 58s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 58s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 58s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 58s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 58s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 58s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 parted amd64 3.6-5 [53.9 kB] 58s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libparted2t64 amd64 3.6-5 [158 kB] 58s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 58s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 58s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 58s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 58s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 58s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-standard amd64 1.549 [11.5 kB] 58s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 58s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 58s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 58s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 58s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 58s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 58s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 58s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 58s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 58s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 58s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 58s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 58s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 58s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 58s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 58s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 58s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 58s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 59s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 exfatprogs amd64 1.2.8-1 [76.3 kB] 59s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 59s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 59s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 59s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 59s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 59s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 73s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.146ubuntu1 [7920 B] 73s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.146ubuntu1 [51.9 kB] 73s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.146ubuntu1 [26.2 kB] 73s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 73s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-8build1 [30.2 kB] 73s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.2-1ubuntu2 [155 kB] 73s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 73s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 74s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 74s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 77s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 77s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 77s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 77s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 77s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 77s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 78s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 78s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 78s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 78s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 78s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 78s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 78s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 78s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu2 [278 kB] 78s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 78s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 78s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-kernel-accessories amd64 1.549 [11.2 kB] 78s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 78s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bcrypt amd64 4.2.0-2.1build1 [221 kB] 78s Preconfiguring packages ... 78s Fetched 829 MB in 23s (36.5 MB/s) 79s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109140 files and directories currently installed.) 79s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 79s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 79s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 79s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 79s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 79s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 79s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 79s Checking for services that may need to be restarted... 79s Checking init scripts... 79s Checking for services that may need to be restarted... 79s Checking init scripts... 80s Stopping some services possibly affected by the upgrade (will be restarted later): 80s cron: stopping...done. 80s 80s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 80s Setting up libc6:amd64 (2.41-1ubuntu1) ... 80s Checking for services that may need to be restarted... 80s Checking init scripts... 80s Restarting services possibly affected by the upgrade: 80s cron: restarting...done. 80s 80s Services restarted successfully. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109141 files and directories currently installed.) 80s Preparing to unpack .../libc-bin_2.41-1ubuntu1_amd64.deb ... 80s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 80s Setting up libc-bin (2.41-1ubuntu1) ... 80s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 81s Preparing to unpack .../libgcc-s1_15-20250222-0ubuntu1_amd64.deb ... 81s Unpacking libgcc-s1:amd64 (15-20250222-0ubuntu1) over (15-20250213-1ubuntu1) ... 81s Setting up libgcc-s1:amd64 (15-20250222-0ubuntu1) ... 81s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 81s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 81s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 81s Setting up ncurses-base (6.5+20250216-2) ... 81s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 82s Preparing to unpack .../libsystemd0_257.3-1ubuntu3_amd64.deb ... 82s Unpacking libsystemd0:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 82s Setting up libsystemd0:amd64 (257.3-1ubuntu3) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 82s Preparing to unpack .../libnss-systemd_257.3-1ubuntu3_amd64.deb ... 82s Unpacking libnss-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 82s Preparing to unpack .../systemd-sysv_257.3-1ubuntu3_amd64.deb ... 82s Unpacking systemd-sysv (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 82s Preparing to unpack .../systemd-resolved_257.3-1ubuntu3_amd64.deb ... 82s Unpacking systemd-resolved (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 82s Preparing to unpack .../libpam-systemd_257.3-1ubuntu3_amd64.deb ... 82s Unpacking libpam-systemd:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 82s Preparing to unpack .../libsystemd-shared_257.3-1ubuntu3_amd64.deb ... 82s Unpacking libsystemd-shared:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 82s Setting up libsystemd-shared:amd64 (257.3-1ubuntu3) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 82s Preparing to unpack .../systemd_257.3-1ubuntu3_amd64.deb ... 82s Unpacking systemd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 82s Preparing to unpack .../systemd-timesyncd_257.3-1ubuntu3_amd64.deb ... 82s Unpacking systemd-timesyncd (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 83s Preparing to unpack .../systemd-cryptsetup_257.3-1ubuntu3_amd64.deb ... 83s Unpacking systemd-cryptsetup (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 83s Preparing to unpack .../udev_257.3-1ubuntu3_amd64.deb ... 83s Unpacking udev (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 83s Preparing to unpack .../libudev1_257.3-1ubuntu3_amd64.deb ... 83s Unpacking libudev1:amd64 (257.3-1ubuntu3) over (257.2-3ubuntu1) ... 83s Setting up libudev1:amd64 (257.3-1ubuntu3) ... 83s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 83s Preparing to unpack .../libcap-ng0_0.8.5-4build1_amd64.deb ... 83s Unpacking libcap-ng0:amd64 (0.8.5-4build1) over (0.8.5-4) ... 83s Setting up libcap-ng0:amd64 (0.8.5-4build1) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 83s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu2_amd64.deb ... 83s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu2) over (1:4.0.2-2ubuntu1) ... 83s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu2) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 83s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu6_amd64.deb ... 83s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu6) over (2.5.5-1ubuntu5) ... 83s Setting up libseccomp2:amd64 (2.5.5-1ubuntu6) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 83s Preparing to unpack .../libselinux1_3.7-3ubuntu3_amd64.deb ... 83s Unpacking libselinux1:amd64 (3.7-3ubuntu3) over (3.7-3ubuntu2) ... 83s Setting up libselinux1:amd64 (3.7-3ubuntu3) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 83s Preparing to unpack .../libapparmor1_4.1.0~beta5-0ubuntu8_amd64.deb ... 83s Unpacking libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) over (4.1.0~beta5-0ubuntu5) ... 83s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 83s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 83s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 83s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 83s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 84s Setting up apt (2.9.33) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 84s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 84s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 84s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 84s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 84s Setting up python3-minimal (3.13.2-2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 85s Preparing to unpack .../0-python3_3.13.2-2_amd64.deb ... 85s Unpacking python3 (3.13.2-2) over (3.13.2-1) ... 85s Preparing to unpack .../1-libpython3.13_3.13.2-2_amd64.deb ... 85s Unpacking libpython3.13:amd64 (3.13.2-2) over (3.13.2-1) ... 85s Preparing to unpack .../2-media-types_13.0.0_all.deb ... 85s Unpacking media-types (13.0.0) over (12.0.0) ... 85s Preparing to unpack .../3-libncurses6_6.5+20250216-2_amd64.deb ... 85s Unpacking libncurses6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 85s Preparing to unpack .../4-libncursesw6_6.5+20250216-2_amd64.deb ... 85s Unpacking libncursesw6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 85s Preparing to unpack .../5-libtinfo6_6.5+20250216-2_amd64.deb ... 85s Unpacking libtinfo6:amd64 (6.5+20250216-2) over (6.5+20250216-1) ... 85s Setting up libtinfo6:amd64 (6.5+20250216-2) ... 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109146 files and directories currently installed.) 85s Preparing to unpack .../0-libsqlite3-0_3.46.1-2_amd64.deb ... 85s Unpacking libsqlite3-0:amd64 (3.46.1-2) over (3.46.1-1) ... 85s Preparing to unpack .../1-python3.13_3.13.2-2_amd64.deb ... 85s Unpacking python3.13 (3.13.2-2) over (3.13.2-1) ... 85s Preparing to unpack .../2-python3.13-minimal_3.13.2-2_amd64.deb ... 85s Unpacking python3.13-minimal (3.13.2-2) over (3.13.2-1) ... 85s Preparing to unpack .../3-libpython3.13-minimal_3.13.2-2_amd64.deb ... 85s Unpacking libpython3.13-minimal:amd64 (3.13.2-2) over (3.13.2-1) ... 85s Preparing to unpack .../4-libpython3.13-stdlib_3.13.2-2_amd64.deb ... 85s Unpacking libpython3.13-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 86s Preparing to unpack .../5-libpython3-stdlib_3.13.2-2_amd64.deb ... 86s Unpacking libpython3-stdlib:amd64 (3.13.2-2) over (3.13.2-1) ... 86s Preparing to unpack .../6-rsync_3.4.1+ds1-3_amd64.deb ... 86s Unpacking rsync (3.4.1+ds1-3) over (3.4.1-0syncable1) ... 86s Selecting previously unselected package libdebuginfod-common. 86s Preparing to unpack .../7-libdebuginfod-common_0.192-4_all.deb ... 86s Unpacking libdebuginfod-common (0.192-4) ... 86s Preparing to unpack .../8-libsemanage-common_3.7-2.1build1_all.deb ... 86s Unpacking libsemanage-common (3.7-2.1build1) over (3.7-2.1) ... 86s Setting up libsemanage-common (3.7-2.1build1) ... 86s (Reading database ... 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Preparing to unpack .../80-python3-systemd_235-1build6_amd64.deb ... 101s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 101s Preparing to unpack .../81-python3.13-gdbm_3.13.2-2_amd64.deb ... 101s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 101s Preparing to unpack .../82-ubuntu-kernel-accessories_1.549_amd64.deb ... 101s Unpacking ubuntu-kernel-accessories (1.549) over (1.548) ... 101s Preparing to unpack .../83-cloud-init_25.1-0ubuntu3_all.deb ... 101s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 101s Preparing to unpack .../84-python3-bcrypt_4.2.0-2.1build1_amd64.deb ... 101s Unpacking python3-bcrypt (4.2.0-2.1build1) over (4.2.0-2.1) ... 101s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 101s Setting up media-types (13.0.0) ... 101s Installing new version of config file /etc/mime.types ... 101s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 101s Setting up ubuntu-kernel-accessories (1.549) ... 101s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 101s Setting up pci.ids (0.0~2025.03.09-1) ... 101s Setting up libnewt0.52:amd64 (0.52.24-4ubuntu2) ... 101s Setting up apt-utils (2.9.33) ... 101s Setting up libdebuginfod-common (0.192-4) ... 101s Setting up exfatprogs (1.2.8-1) ... 101s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 101s Setting up bpftool (7.6.0+6.14.0-10.10) ... 101s Setting up libestr0:amd64 (0.1.11-2) ... 101s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 101s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 101s Setting up dosfstools (4.2-1.2) ... 101s Setting up rsyslog (8.2412.0-2ubuntu2) ... 101s info: The user `syslog' is already a member of `adm'. 102s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 102s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 102s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 102s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 102s Setting up systemd (257.3-1ubuntu3) ... 102s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 102s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 103s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 103s Setting up libparted2t64:amd64 (3.6-5) ... 103s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2 to /lib/x86_64-linux-gnu/libparted.so.2.usr-is-merged by libparted2t64' 103s Removing 'diversion of /lib/x86_64-linux-gnu/libparted.so.2.0.5 to /lib/x86_64-linux-gnu/libparted.so.2.0.5.usr-is-merged by libparted2t64' 103s Setting up linux-headers-generic (6.14.0-10.10) ... 103s Setting up libjemalloc2:amd64 (5.3.0-3) ... 103s Setting up locales (2.41-1ubuntu1) ... 103s Installing new version of config file /etc/locale.alias ... 104s Generating locales (this might take a while)... 106s en_US.UTF-8... done 106s Generation complete. 106s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 106s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 106s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 106s Installing new version of config file /etc/apparmor.d/fusermount3 ... 106s Installing new version of config file /etc/apparmor.d/lsusb ... 106s Installing new version of config file /etc/apparmor.d/openvpn ... 107s Reloading AppArmor profiles 108s Setting up libftdi1-2:amd64 (1.5-8build1) ... 108s Setting up libglib2.0-data (2.84.0-1) ... 108s Setting up systemd-cryptsetup (257.3-1ubuntu3) ... 108s Setting up libncurses6:amd64 (6.5+20250216-2) ... 108s Setting up strace (6.13+ds-1ubuntu1) ... 108s Setting up xz-utils (5.6.4-1) ... 108s Setting up systemd-timesyncd (257.3-1ubuntu3) ... 109s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 109s Setting up libatomic1:amd64 (15-20250222-0ubuntu1) ... 109s Setting up udev (257.3-1ubuntu3) ... 109s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 112s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 112s Setting up libpci3:amd64 (1:3.13.0-2) ... 112s Setting up whiptail (0.52.24-4ubuntu2) ... 112s Setting up python-apt-common (2.9.9build1) ... 112s Setting up pnp.ids (0.393-3) ... 112s Setting up libnl-3-200:amd64 (3.7.0-1) ... 112s Setting up python3.13-minimal (3.13.2-2) ... 112s Setting up libgpgme11t64:amd64 (1.24.2-1ubuntu2) ... 112s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 112s Setting up libc-dev-bin (2.41-1ubuntu1) ... 112s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 112s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 112s Setting up rsync (3.4.1+ds1-3) ... 113s rsync.service is a disabled or a static unit not running, not starting it. 113s Setting up python3.13-gdbm (3.13.2-2) ... 113s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 113s Setting up systemd-resolved (257.3-1ubuntu3) ... 113s Setting up initramfs-tools-bin (0.146ubuntu1) ... 113s Setting up ncurses-term (6.5+20250216-2) ... 113s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 113s Setting up libpython3.13:amd64 (3.13.2-2) ... 113s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 113s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 113s Setting up systemd-sysv (257.3-1ubuntu3) ... 113s Setting up linux-headers-virtual (6.14.0-10.10) ... 113s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 113s Setting up python3.13 (3.13.2-2) ... 114s Setting up htop (3.4.0-2) ... 114s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 116s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 116s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 116s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 116s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 116s Setting up parted (3.6-5) ... 116s Setting up libnss-systemd:amd64 (257.3-1ubuntu3) ... 116s Setting up python3 (3.13.2-2) ... 117s Setting up python3-newt:amd64 (0.52.24-4ubuntu2) ... 117s Setting up python3-markupsafe (2.1.5-1build4) ... 117s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 119s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 119s Setting up hwdata (0.393-3) ... 119s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 119s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 119s No schema files found: doing nothing. 119s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 119s Setting up linux-perf (6.14.0-10.10) ... 119s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 119s Setting up pciutils (1:3.13.0-2) ... 119s Setting up python3-rpds-py (0.21.0-2ubuntu2) ... 119s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 119s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 119s Setting up libpam-systemd:amd64 (257.3-1ubuntu3) ... 119s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 119s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 119s Setting up curl (8.12.1-3ubuntu1) ... 119s Setting up linux-image-virtual (6.14.0-10.10) ... 119s Setting up initramfs-tools-core (0.146ubuntu1) ... 119s Setting up linux-tools-common (6.14.0-10.10) ... 119s Setting up python3-systemd (235-1build6) ... 119s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 119s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 119s Setting up linux-image-generic (6.14.0-10.10) ... 119s Setting up python3-dbus (1.3.2-5build5) ... 119s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 119s Setting up initramfs-tools (0.146ubuntu1) ... 119s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 119s Installing new version of config file /etc/kernel/postrm.d/initramfs-tools ... 119s update-initramfs: deferring update (trigger activated) 119s Setting up linux-generic (6.14.0-10.10) ... 119s Setting up ubuntu-minimal (1.549) ... 119s Setting up python3-apt (2.9.9build1) ... 120s Setting up python3-bcrypt (4.2.0-2.1build1) ... 120s Setting up python3-yaml (6.0.2-1build2) ... 120s Setting up libfwupd3:amd64 (2.0.6-4) ... 120s Setting up python3-lazr.uri (1.0.6-6) ... 120s Setting up binutils (2.44-3ubuntu1) ... 120s Setting up ubuntu-standard (1.549) ... 120s Setting up cloud-init-base (25.1-0ubuntu3) ... 121s Setting up linux-virtual (6.14.0-10.10) ... 121s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 121s Setting up python3-gi (3.50.0-4build1) ... 122s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 122s Setting up fwupd (2.0.6-4) ... 122s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 122s fwupd.service is a disabled or a static unit not running, not starting it. 122s Setting up cloud-init (25.1-0ubuntu3) ... 122s Processing triggers for man-db (2.13.0-1) ... 124s Processing triggers for dbus (1.16.2-1ubuntu1) ... 124s Processing triggers for shared-mime-info (2.4-5) ... 124s Warning: program compiled against libxml 212 using older 209 124s Processing triggers for libc-bin (2.41-1ubuntu1) ... 124s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 124s /etc/kernel/postinst.d/initramfs-tools: 124s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 124s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 135s /etc/kernel/postinst.d/zz-update-grub: 135s Sourcing file `/etc/default/grub' 135s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 135s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 135s Generating grub configuration file ... 135s Found linux image: /boot/vmlinuz-6.14.0-10-generic 135s Found initrd image: /boot/initrd.img-6.14.0-10-generic 136s Found linux image: /boot/vmlinuz-6.12.0-16-generic 136s Found initrd image: /boot/initrd.img-6.12.0-16-generic 136s Found linux image: /boot/vmlinuz-6.11.0-8-generic 136s Found initrd image: /boot/initrd.img-6.11.0-8-generic 136s Warning: os-prober will not be executed to detect other bootable partitions. 136s Systems on them will not be added to the GRUB boot configuration. 136s Check GRUB_DISABLE_OS_PROBER documentation entry. 136s Adding boot menu entry for UEFI Firmware Settings ... 136s done 136s Processing triggers for initramfs-tools (0.146ubuntu1) ... 136s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 136s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Solving dependencies... 148s The following packages will be REMOVED: 148s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 148s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 148s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 148s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 148s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 148s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 148s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 148s linux-tools-6.12.0-16-generic* 149s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 149s After this operation, 545 MB disk space will be freed. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 149s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 149s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 149s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 149s Removing libpython3.12t64:amd64 (3.12.9-1) ... 149s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 149s Removing libnsl2:amd64 (1.3.0-3build3) ... 149s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 149s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 149s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 151s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 152s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 154s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 154s /etc/kernel/postrm.d/initramfs-tools: 154s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 155s /etc/kernel/postrm.d/zz-update-grub: 155s Sourcing file `/etc/default/grub' 155s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 155s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 155s Generating grub configuration file ... 155s Found linux image: /boot/vmlinuz-6.14.0-10-generic 155s Found initrd image: /boot/initrd.img-6.14.0-10-generic 155s Found linux image: /boot/vmlinuz-6.12.0-16-generic 155s Found initrd image: /boot/initrd.img-6.12.0-16-generic 155s Warning: os-prober will not be executed to detect other bootable partitions. 155s Systems on them will not be added to the GRUB boot configuration. 155s Check GRUB_DISABLE_OS_PROBER documentation entry. 155s Adding boot menu entry for UEFI Firmware Settings ... 155s done 155s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 155s W: Removing the running kernel 155s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 155s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 155s /etc/kernel/postrm.d/initramfs-tools: 155s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 155s /etc/kernel/postrm.d/zz-update-grub: 155s Sourcing file `/etc/default/grub' 155s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 155s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 155s Generating grub configuration file ... 156s Found linux image: /boot/vmlinuz-6.14.0-10-generic 156s Found initrd image: /boot/initrd.img-6.14.0-10-generic 156s Warning: os-prober will not be executed to detect other bootable partitions. 156s Systems on them will not be added to the GRUB boot configuration. 156s Check GRUB_DISABLE_OS_PROBER documentation entry. 156s Adding boot menu entry for UEFI Firmware Settings ... 156s done 156s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 156s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 158s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 158s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 158s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 158s Processing triggers for libc-bin (2.41-1ubuntu1) ... 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 158s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 158s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 158s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 158s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 158s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 158s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 158s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 158s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 158s autopkgtest [21:40:22]: upgrading testbed (apt dist-upgrade and autopurge) 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s Entering ResolveByKeep 160s 160s Calculating upgrade... 160s The following packages will be upgraded: 160s libc-bin libc-dev-bin libc6 libc6-dev locales 160s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 10.5 MB of archives. 160s After this operation, 1024 B of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 161s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 161s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 161s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 161s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 161s Preconfiguring packages ... 161s Fetched 10.5 MB in 1s (11.7 MB/s) 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 161s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 162s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 162s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up libc6:amd64 (2.41-1ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 162s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 162s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up libc-bin (2.41-1ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 162s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 162s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 163s Setting up locales (2.41-1ubuntu2) ... 163s Generating locales (this might take a while)... 165s en_US.UTF-8... done 165s Generation complete. 165s Setting up libc-dev-bin (2.41-1ubuntu2) ... 165s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 165s Processing triggers for man-db (2.13.0-1) ... 165s Processing triggers for systemd (257.3-1ubuntu3) ... 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 167s Solving dependencies... 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s autopkgtest [21:40:31]: rebooting testbed after setup commands that affected boot 191s autopkgtest [21:40:55]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 194s autopkgtest [21:40:58]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 198s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (dsc) [2324 B] 198s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (tar) [22.0 MB] 198s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (diff) [57.8 kB] 198s gpgv: Signature made Tue Mar 4 18:06:31 2025 UTC 198s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 198s gpgv: Can't check signature: No public key 198s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-3build2.dsc: no acceptable signature found 199s autopkgtest [21:41:03]: testing package pymol version 3.0.0+dfsg-3build2 200s autopkgtest [21:41:04]: build not needed 203s autopkgtest [21:41:07]: test command1: preparing testbed 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 204s Starting pkgProblemResolver with broken count: 0 204s Starting 2 pkgProblemResolver with broken count: 0 204s Done 205s The following NEW packages will be installed: 205s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 205s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 205s libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1 libfontconfig1 205s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 libglu1-mesa 205s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 205s libhdf5-310 libhdf5-hl-310 libice6 libinput-bin libinput10 libjpeg-turbo8 205s libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf22 libopengl0 205s libpciaccess0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 205s libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 205s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 205s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 205s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 205s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 205s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 205s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 205s libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium 205s pymol pymol-data python3-legacy-cgi python3-numpy python3-numpy-dev 205s python3-opengl python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 205s python3-pyqt5.sip x11-common 205s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. 205s Need to get 52.2 MB of archives. 205s After this operation, 203 MB of additional disk space will be used. 205s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 205s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 205s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 205s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 205s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 206s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 206s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 206s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 206s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 206s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 206s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 206s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-16ubuntu1 [30.9 kB] 206s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-16ubuntu1 [23.6 kB] 206s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-16ubuntu1 [27.5 kB] 206s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.11-0ubuntu2 [292 kB] 206s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 206s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 206s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 206s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 206s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 206s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 206s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 206s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 206s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 206s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 206s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 206s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 25.0.1-2ubuntu1 [12.1 MB] 206s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 25.0.1-2ubuntu1 [33.4 kB] 206s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 206s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 206s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 25.0.1-2ubuntu1 [136 kB] 206s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 206s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 25.0.1-2ubuntu1 [35.7 kB] 206s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 206s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 206s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 206s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 25.0.1-2ubuntu1 [146 kB] 206s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 206s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 206s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 206s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 206s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 206s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 206s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 206s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 206s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 206s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 206s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 206s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.14.0-1 [103 kB] 206s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 206s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB] 206s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 206s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.27.1-1 [155 kB] 206s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 206s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 206s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 206s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 206s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 206s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 206s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 206s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 206s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 206s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 206s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 206s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 206s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 206s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 206s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 206s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 206s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 206s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 207s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 207s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 207s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 207s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 207s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 207s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 207s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-4ubuntu1 [124 kB] 207s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5designer5 amd64 5.15.15-6build1 [2827 kB] 207s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-4ubuntu1 [122 kB] 207s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5help5 amd64 5.15.15-6build1 [162 kB] 207s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-4ubuntu1 [150 kB] 207s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-4ubuntu1 [208 kB] 207s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-4ubuntu1 [149 kB] 207s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-legacy-cgi all 2.6.2-1 [16.6 kB] 207s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 207s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 207s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 207s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.sip amd64 12.17.0-1build1 [76.5 kB] 207s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-2 [2725 kB] 207s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-2 [128 kB] 207s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol-data all 3.0.0+dfsg-3build2 [1394 kB] 207s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymol amd64 3.0.0+dfsg-3build2 [4131 kB] 207s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol all 3.0.0+dfsg-3build2 [126 kB] 208s Fetched 52.2 MB in 2s (21.9 MB/s) 208s Selecting previously unselected package python3-numpy-dev:amd64. 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 208s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 208s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 208s Selecting previously unselected package libblas3:amd64. 208s Preparing to unpack .../01-libblas3_3.12.1-2_amd64.deb ... 208s Unpacking libblas3:amd64 (3.12.1-2) ... 208s Selecting previously unselected package libgfortran5:amd64. 208s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 208s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 208s Selecting previously unselected package liblapack3:amd64. 208s Preparing to unpack .../03-liblapack3_3.12.1-2_amd64.deb ... 208s Unpacking liblapack3:amd64 (3.12.1-2) ... 208s Selecting previously unselected package python3-numpy. 208s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 208s Unpacking python3-numpy (1:2.2.3+ds-5) ... 208s Selecting previously unselected package fonts-dejavu-mono. 208s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 208s Unpacking fonts-dejavu-mono (2.37-8) ... 208s Selecting previously unselected package fonts-dejavu-core. 208s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 208s Unpacking fonts-dejavu-core (2.37-8) ... 208s Selecting previously unselected package fontconfig-config. 208s Preparing to unpack .../07-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 208s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 208s Selecting previously unselected package libfontconfig1:amd64. 208s Preparing to unpack .../08-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 208s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 209s Selecting previously unselected package fontconfig. 209s Preparing to unpack .../09-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 209s Unpacking fontconfig (2.15.0-2ubuntu1) ... 209s Selecting previously unselected package libaec0:amd64. 209s Preparing to unpack .../10-libaec0_1.1.3-1_amd64.deb ... 209s Unpacking libaec0:amd64 (1.1.3-1) ... 209s Selecting previously unselected package libavahi-common-data:amd64. 209s Preparing to unpack .../11-libavahi-common-data_0.8-16ubuntu1_amd64.deb ... 209s Unpacking libavahi-common-data:amd64 (0.8-16ubuntu1) ... 209s Selecting previously unselected package libavahi-common3:amd64. 209s Preparing to unpack .../12-libavahi-common3_0.8-16ubuntu1_amd64.deb ... 209s Unpacking libavahi-common3:amd64 (0.8-16ubuntu1) ... 209s Selecting previously unselected package libavahi-client3:amd64. 209s Preparing to unpack .../13-libavahi-client3_0.8-16ubuntu1_amd64.deb ... 209s Unpacking libavahi-client3:amd64 (0.8-16ubuntu1) ... 209s Selecting previously unselected package libcups2t64:amd64. 209s Preparing to unpack .../14-libcups2t64_2.4.11-0ubuntu2_amd64.deb ... 209s Unpacking libcups2t64:amd64 (2.4.11-0ubuntu2) ... 209s Selecting previously unselected package libdouble-conversion3:amd64. 209s Preparing to unpack .../15-libdouble-conversion3_3.3.1-1_amd64.deb ... 209s Unpacking libdouble-conversion3:amd64 (3.3.1-1) ... 209s Selecting previously unselected package libpciaccess0:amd64. 209s Preparing to unpack .../16-libpciaccess0_0.17-3build1_amd64.deb ... 209s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 209s Selecting previously unselected package libdrm-intel1:amd64. 209s Preparing to unpack .../17-libdrm-intel1_2.4.123-1_amd64.deb ... 209s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 209s Selecting previously unselected package libwayland-server0:amd64. 209s Preparing to unpack .../18-libwayland-server0_1.23.1-3_amd64.deb ... 209s Unpacking libwayland-server0:amd64 (1.23.1-3) ... 209s Selecting previously unselected package libx11-xcb1:amd64. 209s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 209s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 209s Selecting previously unselected package libxcb-dri3-0:amd64. 209s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_amd64.deb ... 209s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 209s Selecting previously unselected package libxcb-present0:amd64. 209s Preparing to unpack .../21-libxcb-present0_1.17.0-2_amd64.deb ... 209s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 209s Selecting previously unselected package libxcb-randr0:amd64. 209s Preparing to unpack .../22-libxcb-randr0_1.17.0-2_amd64.deb ... 209s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 209s Selecting previously unselected package libxcb-sync1:amd64. 209s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_amd64.deb ... 209s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 209s Selecting previously unselected package libxcb-xfixes0:amd64. 209s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_amd64.deb ... 209s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 209s Selecting previously unselected package libxshmfence1:amd64. 209s Preparing to unpack .../25-libxshmfence1_1.3-1build5_amd64.deb ... 209s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 209s Selecting previously unselected package mesa-libgallium:amd64. 209s Preparing to unpack .../26-mesa-libgallium_25.0.1-2ubuntu1_amd64.deb ... 209s Unpacking mesa-libgallium:amd64 (25.0.1-2ubuntu1) ... 209s Selecting previously unselected package libgbm1:amd64. 209s Preparing to unpack .../27-libgbm1_25.0.1-2ubuntu1_amd64.deb ... 209s Unpacking libgbm1:amd64 (25.0.1-2ubuntu1) ... 209s Selecting previously unselected package libwayland-client0:amd64. 209s Preparing to unpack .../28-libwayland-client0_1.23.1-3_amd64.deb ... 209s Unpacking libwayland-client0:amd64 (1.23.1-3) ... 209s Selecting previously unselected package libxcb-shm0:amd64. 209s Preparing to unpack .../29-libxcb-shm0_1.17.0-2_amd64.deb ... 209s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 209s Selecting previously unselected package libegl-mesa0:amd64. 209s Preparing to unpack .../30-libegl-mesa0_25.0.1-2ubuntu1_amd64.deb ... 209s Unpacking libegl-mesa0:amd64 (25.0.1-2ubuntu1) ... 209s Selecting previously unselected package libvulkan1:amd64. 209s Preparing to unpack .../31-libvulkan1_1.4.304.0-1_amd64.deb ... 209s Unpacking libvulkan1:amd64 (1.4.304.0-1) ... 209s Selecting previously unselected package libgl1-mesa-dri:amd64. 209s Preparing to unpack .../32-libgl1-mesa-dri_25.0.1-2ubuntu1_amd64.deb ... 209s Unpacking libgl1-mesa-dri:amd64 (25.0.1-2ubuntu1) ... 209s Selecting previously unselected package libglvnd0:amd64. 209s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_amd64.deb ... 209s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 209s Selecting previously unselected package libxcb-glx0:amd64. 209s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_amd64.deb ... 209s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 209s Selecting previously unselected package libxxf86vm1:amd64. 209s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 209s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 210s Selecting previously unselected package libglx-mesa0:amd64. 210s Preparing to unpack .../36-libglx-mesa0_25.0.1-2ubuntu1_amd64.deb ... 210s Unpacking libglx-mesa0:amd64 (25.0.1-2ubuntu1) ... 210s Selecting previously unselected package libglx0:amd64. 210s Preparing to unpack .../37-libglx0_1.7.0-1build1_amd64.deb ... 210s Unpacking libglx0:amd64 (1.7.0-1build1) ... 210s Selecting previously unselected package libgl1:amd64. 210s Preparing to unpack .../38-libgl1_1.7.0-1build1_amd64.deb ... 210s Unpacking libgl1:amd64 (1.7.0-1build1) ... 210s Selecting previously unselected package libglew2.2:amd64. 210s Preparing to unpack .../39-libglew2.2_2.2.0-4build1_amd64.deb ... 210s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 210s Selecting previously unselected package libgomp1:amd64. 210s Preparing to unpack .../40-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 210s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 210s Selecting previously unselected package libgraphite2-3:amd64. 210s Preparing to unpack .../41-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 210s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 210s Selecting previously unselected package libharfbuzz0b:amd64. 210s Preparing to unpack .../42-libharfbuzz0b_10.2.0-1_amd64.deb ... 210s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 210s Selecting previously unselected package libsz2:amd64. 210s Preparing to unpack .../43-libsz2_1.1.3-1_amd64.deb ... 210s Unpacking libsz2:amd64 (1.1.3-1) ... 210s Selecting previously unselected package libhdf5-310:amd64. 210s Preparing to unpack .../44-libhdf5-310_1.14.5+repack-3_amd64.deb ... 210s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 210s Selecting previously unselected package libhdf5-hl-310:amd64. 210s Preparing to unpack .../45-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 210s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 210s Selecting previously unselected package x11-common. 210s Preparing to unpack .../46-x11-common_1%3a7.7+23ubuntu3_all.deb ... 210s Unpacking x11-common (1:7.7+23ubuntu3) ... 210s Selecting previously unselected package libice6:amd64. 210s Preparing to unpack .../47-libice6_2%3a1.1.1-1_amd64.deb ... 210s Unpacking libice6:amd64 (2:1.1.1-1) ... 210s Selecting previously unselected package libwacom-common. 210s Preparing to unpack .../48-libwacom-common_2.14.0-1_all.deb ... 210s Unpacking libwacom-common (2.14.0-1) ... 210s Selecting previously unselected package libwacom9:amd64. 210s Preparing to unpack .../49-libwacom9_2.14.0-1_amd64.deb ... 210s Unpacking libwacom9:amd64 (2.14.0-1) ... 210s Selecting previously unselected package libinput-bin. 210s Preparing to unpack .../50-libinput-bin_1.27.1-1_amd64.deb ... 210s Unpacking libinput-bin (1.27.1-1) ... 210s Selecting previously unselected package libmtdev1t64:amd64. 210s Preparing to unpack .../51-libmtdev1t64_1.1.7-1_amd64.deb ... 210s Unpacking libmtdev1t64:amd64 (1.1.7-1) ... 210s Selecting previously unselected package libinput10:amd64. 210s Preparing to unpack .../52-libinput10_1.27.1-1_amd64.deb ... 210s Unpacking libinput10:amd64 (1.27.1-1) ... 210s Selecting previously unselected package libjpeg-turbo8:amd64. 210s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 210s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 210s Selecting previously unselected package libjpeg8:amd64. 210s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_amd64.deb ... 210s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 210s Selecting previously unselected package libmd4c0:amd64. 210s Preparing to unpack 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... 210s Selecting previously unselected package libxcb-keysyms1:amd64. 211s Preparing to unpack .../66-libxcb-keysyms1_0.4.1-1_amd64.deb ... 211s Unpacking libxcb-keysyms1:amd64 (0.4.1-1) ... 211s Selecting previously unselected package libxcb-render0:amd64. 211s Preparing to unpack .../67-libxcb-render0_1.17.0-2_amd64.deb ... 211s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 211s Selecting previously unselected package libxcb-render-util0:amd64. 211s Preparing to unpack .../68-libxcb-render-util0_0.3.10-1_amd64.deb ... 211s Unpacking libxcb-render-util0:amd64 (0.3.10-1) ... 211s Selecting previously unselected package libxcb-shape0:amd64. 211s Preparing to unpack .../69-libxcb-shape0_1.17.0-2_amd64.deb ... 211s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 211s Selecting previously unselected package libxcb-xinerama0:amd64. 211s Preparing to unpack .../70-libxcb-xinerama0_1.17.0-2_amd64.deb ... 211s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 211s Selecting previously unselected package libxcb-xinput0:amd64. 211s Preparing to unpack .../71-libxcb-xinput0_1.17.0-2_amd64.deb ... 211s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ... 211s Selecting previously unselected package libxcb-xkb1:amd64. 211s Preparing to unpack .../72-libxcb-xkb1_1.17.0-2_amd64.deb ... 211s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ... 211s Selecting previously unselected package libxkbcommon-x11-0:amd64. 211s Preparing to unpack .../73-libxkbcommon-x11-0_1.7.0-2_amd64.deb ... 211s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ... 211s Selecting previously unselected package libxrender1:amd64. 211s Preparing to unpack .../74-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 211s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 211s Selecting previously unselected package libqt5gui5t64:amd64. 211s Preparing to unpack .../75-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 211s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 211s Selecting previously unselected package libqt5widgets5t64:amd64. 211s Preparing to unpack .../76-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 211s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 211s Selecting previously unselected package libqt5xml5t64:amd64. 211s Preparing to unpack .../77-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 211s Unpacking libqt5xml5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 211s Selecting previously unselected package libqt5designer5:amd64. 211s Preparing to unpack .../78-libqt5designer5_5.15.15-6build1_amd64.deb ... 211s Unpacking libqt5designer5:amd64 (5.15.15-6build1) ... 211s Selecting previously unselected package libqt5sql5t64:amd64. 211s Preparing to unpack .../79-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 211s Unpacking libqt5sql5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 211s Selecting previously unselected package libqt5help5:amd64. 211s Preparing to unpack .../80-libqt5help5_5.15.15-6build1_amd64.deb ... 211s Unpacking libqt5help5:amd64 (5.15.15-6build1) ... 211s Selecting previously unselected package libqt5opengl5t64:amd64. 211s Preparing to unpack .../81-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 211s Unpacking libqt5opengl5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 211s Selecting previously unselected package libqt5printsupport5t64:amd64. 211s Preparing to unpack .../82-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 211s Unpacking libqt5printsupport5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 211s Selecting previously unselected package libqt5test5t64:amd64. 211s Preparing to unpack .../83-libqt5test5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 211s Unpacking libqt5test5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 211s Selecting previously unselected package python3-legacy-cgi. 211s Preparing to unpack .../84-python3-legacy-cgi_2.6.2-1_all.deb ... 211s Unpacking python3-legacy-cgi (2.6.2-1) ... 211s Selecting previously unselected package libopengl0:amd64. 211s Preparing to unpack .../85-libopengl0_1.7.0-1build1_amd64.deb ... 211s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 211s Selecting previously unselected package libglu1-mesa:amd64. 211s Preparing to unpack .../86-libglu1-mesa_9.0.2-1.1build1_amd64.deb ... 211s Unpacking libglu1-mesa:amd64 (9.0.2-1.1build1) ... 211s Selecting previously unselected package python3-opengl. 211s Preparing to unpack .../87-python3-opengl_3.1.7+dfsg-1_all.deb ... 211s Unpacking python3-opengl (3.1.7+dfsg-1) ... 212s Selecting previously unselected package python3-pyqt5.sip. 212s Preparing to unpack .../88-python3-pyqt5.sip_12.17.0-1build1_amd64.deb ... 212s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 212s Selecting previously unselected package python3-pyqt5. 212s Preparing to unpack .../89-python3-pyqt5_5.15.11+dfsg-2_amd64.deb ... 212s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 212s Selecting previously unselected package python3-pyqt5.qtopengl. 212s Preparing to unpack .../90-python3-pyqt5.qtopengl_5.15.11+dfsg-2_amd64.deb ... 212s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 212s Selecting previously unselected package pymol-data. 212s Preparing to unpack .../91-pymol-data_3.0.0+dfsg-3build2_all.deb ... 212s Unpacking pymol-data (3.0.0+dfsg-3build2) ... 212s Selecting previously unselected package python3-pymol. 212s Preparing to unpack .../92-python3-pymol_3.0.0+dfsg-3build2_amd64.deb ... 212s Unpacking python3-pymol (3.0.0+dfsg-3build2) ... 212s Selecting previously unselected package pymol. 212s Preparing to unpack .../93-pymol_3.0.0+dfsg-3build2_all.deb ... 212s Unpacking pymol (3.0.0+dfsg-3build2) ... 212s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 212s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 212s Setting up libwayland-server0:amd64 (1.23.1-3) ... 212s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 212s Setting up libpciaccess0:amd64 (0.17-3build1) ... 212s Setting up libdouble-conversion3:amd64 (3.3.1-1) ... 212s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 212s Setting up libxcb-xinput0:amd64 (1.17.0-2) ... 212s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 212s Setting up libxcb-render0:amd64 (1.17.0-2) ... 212s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 212s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 212s Setting up libdrm-intel1:amd64 (2.4.123-1) ... 212s Setting up libxcb-keysyms1:amd64 (0.4.1-1) ... 212s Setting up libxcb-shape0:amd64 (1.17.0-2) ... 212s Setting up x11-common (1:7.7+23ubuntu3) ... 212s Setting up libxcb-render-util0:amd64 (0.3.10-1) ... 212s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 212s Setting up libxcb-icccm4:amd64 (0.4.2-1) ... 212s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 212s Setting up libpcre2-16-0:amd64 (10.45-1) ... 212s Setting up libaec0:amd64 (1.1.3-1) ... 212s Setting up libopengl0:amd64 (1.7.0-1build1) ... 212s Setting up libxcb-util1:amd64 (0.4.1-1) ... 212s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 212s Setting up libxcb-xkb1:amd64 (1.17.0-2) ... 212s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 212s Setting up libxcb-present0:amd64 (1.17.0-2) ... 212s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 212s Setting up libblas3:amd64 (3.12.1-2) ... 212s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 212s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ... 212s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 212s Setting up libavahi-common-data:amd64 (0.8-16ubuntu1) ... 212s Setting up pymol-data (3.0.0+dfsg-3build2) ... 212s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ... 212s Setting up fonts-dejavu-mono (2.37-8) ... 212s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 212s Setting up fonts-dejavu-core (2.37-8) ... 212s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 212s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ... 212s Setting up libvulkan1:amd64 (1.4.304.0-1) ... 212s Setting up python3-legacy-cgi (2.6.2-1) ... 213s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 213s Setting up libmtdev1t64:amd64 (1.1.7-1) ... 213s Setting up libxshmfence1:amd64 (1.3-1build5) ... 213s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 213s Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 213s Setting up libmd4c0:amd64 (0.5.2-2) ... 213s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 213s Setting up libglu1-mesa:amd64 (9.0.2-1.1build1) ... 213s Setting up libsz2:amd64 (1.1.3-1) ... 213s Setting up libwacom-common (2.14.0-1) ... 213s Setting up libwayland-client0:amd64 (1.23.1-3) ... 213s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 213s Setting up libice6:amd64 (2:1.1.1-1) ... 213s Setting up mesa-libgallium:amd64 (25.0.1-2ubuntu1) ... 213s Setting up liblapack3:amd64 (3.12.1-2) ... 213s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 213s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 213s Setting up libgbm1:amd64 (25.0.1-2ubuntu1) ... 213s Setting up libwacom9:amd64 (2.14.0-1) ... 213s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 213s Setting up libgl1-mesa-dri:amd64 (25.0.1-2ubuntu1) ... 213s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 213s Setting up libavahi-common3:amd64 (0.8-16ubuntu1) ... 213s Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 213s Setting up libqt5test5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 213s Setting up libinput-bin (1.27.1-1) ... 213s Setting up libegl-mesa0:amd64 (25.0.1-2ubuntu1) ... 213s Setting up python3-numpy (1:2.2.3+ds-5) ... 214s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 214s Setting up libegl1:amd64 (1.7.0-1build1) ... 214s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 214s Setting up libsm6:amd64 (2:1.2.4-1) ... 214s Setting up libavahi-client3:amd64 (0.8-16ubuntu1) ... 214s Setting up libinput10:amd64 (1.27.1-1) ... 214s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 214s Setting up fontconfig (2.15.0-2ubuntu1) ... 216s Regenerating fonts cache... done. 216s Setting up libglx-mesa0:amd64 (25.0.1-2ubuntu1) ... 216s Setting up libglx0:amd64 (1.7.0-1build1) ... 216s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 216s Setting up libgl1:amd64 (1.7.0-1build1) ... 216s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 216s Setting up libcups2t64:amd64 (2.4.11-0ubuntu2) ... 216s Setting up python3-opengl (3.1.7+dfsg-1) ... 217s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 217s |\ |\ 218s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 218s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 218s Setting up libqt5help5:amd64 (5.15.15-6build1) ... 218s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 218s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 218s Setting up libqt5designer5:amd64 (5.15.15-6build1) ... 218s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 218s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 218s Setting up python3-pymol (3.0.0+dfsg-3build2) ... 219s Setting up pymol (3.0.0+dfsg-3build2) ... 219s Processing triggers for libc-bin (2.41-1ubuntu2) ... 219s Processing triggers for man-db (2.13.0-1) ... 220s Processing triggers for udev (257.3-1ubuntu3) ... 221s autopkgtest [21:41:25]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 221s autopkgtest [21:41:25]: test command1: [----------------------- 221s Search pymol scripts in /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples... 221s Processing new directory /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples 222s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/chempy/generate_amber.py'... 222s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/chempy/generate_mmff.py'... 222s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/area_diff.pml'... 222s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/build_peptide.py'... 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/contact.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/dali.py 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/density.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/groel_es.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/multiclip_ray.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/packing.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/packsurf.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/ref_frame.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/ribosome.pml 223s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/scenes2movie.pml 223s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/seq_match_sele.pml'... 226s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/ss_xfer.pml 226s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/symsph.py'... 226s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/brick01.py'... 227s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo01.py'... 227s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo02.py'... 230s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo03.py'... 233s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo04.py'... 233s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo05.py'... 234s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo06.py'... 236s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo07.py'... 236s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo08.py'... 236s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_3Dtext01.py'... 236s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_axes.py'... 237s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_label_hack.py'... 240s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_plane.py'... 240s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/chempy_model01.py'... 240s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/chempy_model02.py'... 240s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/chempy_model03.py'... 243s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/click_ordered_list.py'... 244s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/count_molecules.py'... 244s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/extend_demo01.py'... 244s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/gl01.py'... 244s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/gl02.py'... 245s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/gl03.py'... 248s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/importing.py 248s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/link_demo.py'... 248s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/membrane.py'... 248s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/mutate01.pml'... 249s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/mutate02.py'... 250s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/my_ext_gui.py'... 250s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/particle01.py'... 251s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/particle02.py'... 251s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/pick_wiz.py'... 251s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/povray01.py 251s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/scenes_to_movie01.pml'... 251s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/sd_annotate.pml 251s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/sele_wiz.py'... 252s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/start_pymol.py 252s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/syncmol.py'... 252s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/tkwindow.py 252s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/webgui01.py'... 252s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/webgui02.py'... 252s /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 252s mo = re.search("molid\=([A-Z0-9]+)",self.path) 252s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/xmlrpc01.py 252s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/xmlrpc02.py'... 252s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/launching/launch_demo.py'... 252s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/launching/launch_viewer1.py'... 253s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/launching/launch_viewer2.py'... 253s Processing new directory /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/chempy 253s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/chempy/generate_amber.py'... 253s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/chempy/generate_mmff.py'... 253s Processing new directory /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook 253s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/area_diff.pml'... 254s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/build_peptide.py'... 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/contact.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/dali.py 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/density.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/groel_es.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/multiclip_ray.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/packing.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/packsurf.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/ref_frame.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/ribosome.pml 254s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/scenes2movie.pml 254s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/seq_match_sele.pml'... 256s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/ss_xfer.pml 256s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/cookbook/symsph.py'... 256s Processing new directory /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel 256s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/brick01.py'... 256s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo01.py'... 256s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo02.py'... 259s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo03.py'... 263s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo04.py'... 263s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo05.py'... 263s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo06.py'... 264s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo07.py'... 264s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo08.py'... 265s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_3Dtext01.py'... 265s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_axes.py'... 265s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_label_hack.py'... 268s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/cgo_plane.py'... 268s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/chempy_model01.py'... 269s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/chempy_model02.py'... 269s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/chempy_model03.py'... 272s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/click_ordered_list.py'... 272s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/count_molecules.py'... 272s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/extend_demo01.py'... 273s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/gl01.py'... 273s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/gl02.py'... 273s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/gl03.py'... 277s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/importing.py 277s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/link_demo.py'... 277s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/membrane.py'... 277s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/mutate01.pml'... 277s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/mutate02.py'... 279s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/my_ext_gui.py'... 279s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/particle01.py'... 279s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/particle02.py'... 280s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/pick_wiz.py'... 280s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/povray01.py 280s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/scenes_to_movie01.pml'... 280s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/sd_annotate.pml 280s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/sele_wiz.py'... 280s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/start_pymol.py 280s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/syncmol.py'... 280s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/tkwindow.py 280s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/webgui01.py'... 280s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/webgui02.py'... 281s /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 281s mo = re.search("molid\=([A-Z0-9]+)",self.path) 281s Skip /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/xmlrpc01.py 281s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/devel/xmlrpc02.py'... 281s Processing new directory /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/launching 281s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/launching/launch_demo.py'... 281s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/launching/launch_viewer1.py'... 281s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/examples/launching/launch_viewer2.py'... 282s autopkgtest [21:42:26]: test command1: -----------------------] 282s autopkgtest [21:42:26]: test command1: - - - - - - - - - - results - - - - - - - - - - 282s command1 PASS (superficial) 283s autopkgtest [21:42:27]: test command2: preparing testbed 283s Reading package lists... 283s Building dependency tree... 283s Reading state information... 283s Starting pkgProblemResolver with broken count: 0 283s Starting 2 pkgProblemResolver with broken count: 0 283s Done 284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 284s autopkgtest [21:42:28]: test command2: sh debian/tests/call-pymol-scripts data/demo 284s autopkgtest [21:42:28]: test command2: [----------------------- 285s Search pymol scripts in /tmp/autopkgtest.DrR3ZU/build.2eu/src/data/demo... 285s Processing new directory /tmp/autopkgtest.DrR3ZU/build.2eu/src/data/demo 285s Run 'pymol -c /tmp/autopkgtest.DrR3ZU/build.2eu/src/data/demo/cgo03.py'... 288s autopkgtest [21:42:32]: test command2: -----------------------] 289s autopkgtest [21:42:33]: test command2: - - - - - - - - - - results - - - - - - - - - - 289s command2 PASS (superficial) 289s autopkgtest [21:42:33]: test command3: preparing testbed 289s Reading package lists... 290s Building dependency tree... 290s Reading state information... 290s Starting pkgProblemResolver with broken count: 0 290s Starting 2 pkgProblemResolver with broken count: 0 290s Done 290s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 291s autopkgtest [21:42:35]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 291s autopkgtest [21:42:35]: test command3: [----------------------- 291s Search pymol scripts in /usr/share/pymol/examples... 291s Processing new directory /usr/share/pymol/examples 291s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 292s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 292s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 292s Skip /usr/share/pymol/examples/cookbook/contact.pml 292s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 292s Skip /usr/share/pymol/examples/cookbook/packing.pml 292s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 292s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 292s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 292s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 292s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 292s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 292s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 292s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 295s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 299s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 301s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 302s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 302s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 302s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 302s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 305s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 305s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 306s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 306s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 309s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 309s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 310s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 310s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 310s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 310s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 314s Skip /usr/share/pymol/examples/devel/importing.py 314s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 314s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 314s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 315s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 316s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 316s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 317s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 317s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 317s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 317s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 317s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 317s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 318s Skip /usr/share/pymol/examples/devel/tkwindow.py 318s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 318s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 318s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 318s mo = re.search("molid\=([A-Z0-9]+)",self.path) 318s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 318s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 318s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 318s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 318s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 319s Processing new directory /usr/share/pymol/examples/chempy 319s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 319s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 319s Processing new directory /usr/share/pymol/examples/cookbook 319s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 319s Skip /usr/share/pymol/examples/cookbook/contact.pml 319s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 319s Skip /usr/share/pymol/examples/cookbook/packing.pml 319s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 319s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 319s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 319s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 319s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 319s Processing new directory /usr/share/pymol/examples/devel 319s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 319s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 319s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 322s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 326s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 326s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 326s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 327s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 328s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 331s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 331s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 332s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 332s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 335s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 335s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 335s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 336s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 336s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 336s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 340s Skip /usr/share/pymol/examples/devel/importing.py 340s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 340s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 340s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 340s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 342s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 342s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 342s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 343s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 343s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 343s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 343s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 343s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 343s Skip /usr/share/pymol/examples/devel/tkwindow.py 343s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 343s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 344s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 344s mo = re.search("molid\=([A-Z0-9]+)",self.path) 344s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 344s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 344s Processing new directory /usr/share/pymol/examples/launching 344s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 344s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 344s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 345s autopkgtest [21:43:29]: test command3: -----------------------] 345s command3 PASS (superficial) 345s autopkgtest [21:43:29]: test command3: - - - - - - - - - - results - - - - - - - - - - 345s autopkgtest [21:43:29]: test command4: preparing testbed 346s Reading package lists... 346s Building dependency tree... 346s Reading state information... 346s Starting pkgProblemResolver with broken count: 0 346s Starting 2 pkgProblemResolver with broken count: 0 346s Done 346s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 347s autopkgtest [21:43:31]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 347s autopkgtest [21:43:31]: test command4: [----------------------- 348s Search pymol scripts in /usr/share/pymol/examples/cookbook... 348s Processing new directory /usr/share/pymol/examples/cookbook 348s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 348s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 350s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 350s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 352s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 376s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 380s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 381s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 382s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 384s autopkgtest [21:44:08]: test command4: -----------------------] 385s command4 PASS (superficial) 385s autopkgtest [21:44:09]: test command4: - - - - - - - - - - results - - - - - - - - - - 385s autopkgtest [21:44:09]: test command5: preparing testbed 385s Reading package lists... 386s Building dependency tree... 386s Reading state information... 386s Starting pkgProblemResolver with broken count: 0 386s Starting 2 pkgProblemResolver with broken count: 0 386s Done 386s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 387s autopkgtest [21:44:11]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 387s autopkgtest [21:44:11]: test command5: [----------------------- 388s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 388s Copyright (c) Schrodinger, LLC. 388s All Rights Reserved. 388s 388s Created by Warren L. DeLano, Ph.D. 388s 388s PyMOL is user-supported open-source software. Although some versions 388s are freely available, PyMOL is not in the public domain. 388s 388s If PyMOL is helpful in your work or study, then please volunteer 388s support for our ongoing efforts to create open and affordable scientific 388s software by purchasing a PyMOL Maintenance and/or Support subscription. 388s 388s More information can be found at "http://www.pymol.org". 388s 388s Enter "help" for a list of commands. 388s Enter "help " for information on a specific command. 388s 388s Hit ESC anytime to toggle between text and graphics. 388s 388s Setting: wizard_prompt_mode set to 3. 388s Detected 2 CPU cores. Enabled multithreaded rendering. 388s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 388s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 388s PyMOL>wizard annotation 388s PyMOL>set wizard_prompt_mode,3 388s PyMOL>load_annotated_sdf demo.sdf 388s HBA ['[1, 25, 26, 34]\n'] 388s HBD ['[20]\n'] 388s ACD_NUMBER ['MFCD02681585\n'] 388s SCORE ['-222.044\n'] 388s MOLID ['MFCD02681585\n'] 388s HBA ['[1, 21]\n'] 388s HBD ['[]\n'] 388s ACD_NUMBER ['MFCD01567969\n'] 388s SCORE ['-219.984\n'] 388s MOLID ['MFCD01567969\n'] 388s HBA ['[1, 24]\n'] 388s HBD ['[10, 22]\n'] 388s ACD_NUMBER ['MFCD00023789\n'] 388s SCORE ['-219.911\n'] 388s MOLID ['MFCD00023789\n'] 388s HBA ['[1, 11]\n'] 388s HBD ['[3]\n'] 388s ACD_NUMBER ['MFCD02579443\n'] 388s SCORE ['-219.769\n'] 388s MOLID ['MFCD02579443\n'] 388s HBA ['[1, 11]\n'] 388s HBD ['[9]\n'] 388s ACD_NUMBER ['MFCD02579410\n'] 388s SCORE ['-214.809\n'] 388s MOLID ['MFCD02579410\n'] 388s HBA ['[1, 20, 22, 27, 32]\n'] 388s HBD ['[10, 20]\n'] 388s ACD_NUMBER ['MFCD02579135\n'] 388s SCORE ['-213.630\n'] 388s MOLID ['MFCD02579135\n'] 388s HBA ['[1, 11, 14, 21]\n'] 388s HBD ['[]\n'] 388s ACD_NUMBER ['MFCD02681468\n'] 388s SCORE ['-213.462\n'] 388s MOLID ['MFCD02681468\n'] 388s HBA ['[1, 13, 14, 29]\n'] 388s HBD ['[]\n'] 388s ACD_NUMBER ['MFCD00141070\n'] 388s SCORE ['-213.240\n'] 388s MOLID ['MFCD00141070\n'] 388s HBA ['[1, 8]\n'] 388s HBD ['[]\n'] 388s ACD_NUMBER ['MFCD02983625\n'] 388s SCORE ['-211.422\n'] 388s MOLID ['MFCD02983625\n'] 388s HBA ['[1, 11]\n'] 388s HBD ['[3, 12]\n'] 388s ACD_NUMBER ['MFCD00115818\n'] 388s SCORE ['-210.482\n'] 388s MOLID ['MFCD00115818\n'] 388s autopkgtest [21:44:12]: test command5: -----------------------] 389s command5 PASS (superficial) 389s autopkgtest [21:44:13]: test command5: - - - - - - - - - - results - - - - - - - - - - 389s autopkgtest [21:44:13]: @@@@@@@@@@@@@@@@@@@@ summary 389s command1 PASS (superficial) 389s command2 PASS (superficial) 389s command3 PASS (superficial) 389s command4 PASS (superficial) 389s command5 PASS (superficial) 406s nova [W] Skipping flock for amd64 406s Creating nova instance adt-plucky-amd64-pymol-20250315-213744-juju-7f2275-prod-proposed-migration-environment-2-30696ee6-93e2-4ce2-b6c5-5b2f2ebda584 from image adt/ubuntu-plucky-amd64-server-20250304.img (UUID 9c7d4da5-d95f-4c85-ac1f-51eb37e75c4c)... 406s nova [W] Timed out waiting for ccb99b78-8ebb-4af0-ae55-2db6b6865f2b to get deleted.