0s autopkgtest [11:36:27]: starting date and time: 2024-11-15 11:36:27+0000 0s autopkgtest [11:36:27]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [11:36:27]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qbjcmgl2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-28.secgroup --name adt-plucky-amd64-pymol-20241115-113627-juju-7f2275-prod-proposed-migration-environment-15-c4ba3a9d-c1e4-4ef0-bed7-d8e6617c2b1e --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 43s autopkgtest [11:37:10]: testbed dpkg architecture: amd64 43s autopkgtest [11:37:10]: testbed apt version: 2.9.8 43s autopkgtest [11:37:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.5 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1056 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [176 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [297 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [833 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 45s Fetched 2704 kB in 1s (3155 kB/s) 45s Reading package lists... 47s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 48s The following packages will be upgraded: 48s firmware-sof-signed grub-common grub-pc grub-pc-bin grub2-common libcap-ng0 48s libexpat1 lxd-installer man-db pastebinit python3-systemd xfsprogs 49s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Need to get 13.6 MB of archives. 49s After this operation, 477 kB of additional disk space will be used. 49s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 49s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 49s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 grub2-common amd64 2.12-5ubuntu7 [672 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc amd64 2.12-5ubuntu7 [137 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc-bin amd64 2.12-5ubuntu7 [1127 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-common amd64 2.12-5ubuntu7 [2110 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 49s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 49s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 49s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 50s Preconfiguring packages ... 50s Fetched 13.6 MB in 1s (9181 kB/s) 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 50s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 50s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 50s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 50s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 50s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 50s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 50s Preparing to unpack .../0-libexpat1_2.6.4-1_amd64.deb ... 50s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 50s Preparing to unpack .../1-man-db_2.13.0-1_amd64.deb ... 50s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 50s Preparing to unpack .../2-grub2-common_2.12-5ubuntu7_amd64.deb ... 50s Unpacking grub2-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 50s Preparing to unpack .../3-grub-pc_2.12-5ubuntu7_amd64.deb ... 50s Unpacking grub-pc (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 50s Preparing to unpack .../4-grub-pc-bin_2.12-5ubuntu7_amd64.deb ... 50s Unpacking grub-pc-bin (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 50s Preparing to unpack .../5-grub-common_2.12-5ubuntu7_amd64.deb ... 51s Unpacking grub-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 51s Preparing to unpack .../6-lxd-installer_9_all.deb ... 51s Unpacking lxd-installer (9) over (8) ... 51s Preparing to unpack .../7-pastebinit_1.7.1-1_all.deb ... 51s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 51s Preparing to unpack .../8-python3-systemd_235-1build5_amd64.deb ... 51s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 51s Preparing to unpack .../9-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 51s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 51s Setting up libexpat1:amd64 (2.6.4-1) ... 51s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 51s Setting up pastebinit (1.7.1-1) ... 51s Setting up man-db (2.13.0-1) ... 51s Updating database of manual pages ... 53s man-db.service is a disabled or a static unit not running, not starting it. 53s Setting up grub-common (2.12-5ubuntu7) ... 53s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 54s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 54s update-initramfs: deferring update (trigger activated) 54s Setting up lxd-installer (9) ... 54s Setting up python3-systemd (235-1build5) ... 54s Setting up grub2-common (2.12-5ubuntu7) ... 54s Setting up grub-pc-bin (2.12-5ubuntu7) ... 54s Setting up grub-pc (2.12-5ubuntu7) ... 55s Installing for i386-pc platform. 55s Installation finished. No error reported. 55s Sourcing file `/etc/default/grub' 55s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 55s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 55s Generating grub configuration file ... 56s Found linux image: /boot/vmlinuz-6.11.0-8-generic 56s Found initrd image: /boot/initrd.img-6.11.0-8-generic 56s Warning: os-prober will not be executed to detect other bootable partitions. 56s Systems on them will not be added to the GRUB boot configuration. 56s Check GRUB_DISABLE_OS_PROBER documentation entry. 56s Adding boot menu entry for UEFI Firmware Settings ... 56s done 56s Processing triggers for libc-bin (2.40-1ubuntu3) ... 56s Processing triggers for install-info (7.1.1-1) ... 56s Processing triggers for initramfs-tools (0.142ubuntu34) ... 56s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 56s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 65s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 65s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 65s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 65s Reading package lists... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [11:37:34]: rebooting testbed after setup commands that affected boot 82s autopkgtest [11:37:49]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 85s autopkgtest [11:37:52]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 89s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B] 89s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB] 89s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC 89s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 89s gpgv: issuer "emollier@debian.org" 89s gpgv: Can't check signature: No public key 89s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found 90s autopkgtest [11:37:57]: testing package pymol version 3.0.0+dfsg-1 90s autopkgtest [11:37:57]: build not needed 93s autopkgtest [11:38:00]: test command1: preparing testbed 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 98s The following additional packages will be installed: 98s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 98s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 98s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libdrm-radeon1 98s libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5 libgl1 98s libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 98s libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 98s libhdf5-hl-100t64 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 98s liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 libpciaccess0 98s libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 98s libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 98s libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 98s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 98s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 98s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 98s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 98s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 98s libxfixes3 libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 98s mesa-libgallium pymol pymol-data python3-numpy python3-opengl python3-pymol 98s python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 98s Suggested packages: 98s cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins 98s libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest 98s libgle3 python3-tk 98s Recommended packages: 98s libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme 98s qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc 98s | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers 98s | vulkan-icd apbs libglut-dev 98s The following NEW packages will be installed: 98s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 98s fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data 98s libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1 98s libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 98s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa 98s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 98s libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin libinput10 98s libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 98s libopengl0 libpciaccess0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 98s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 98s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 98s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 98s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 98s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 98s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 98s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 98s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 98s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 98s python3-numpy python3-opengl python3-pymol python3-pyqt5 98s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 98s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 48.4 MB/48.4 MB of archives. 98s After this operation, 200 MB of additional disk space will be used. 98s Get:1 /tmp/autopkgtest.hNFZqW/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 98s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 98s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 98s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 98s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 98s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 98s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 98s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 98s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 98s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 98s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 98s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.10-1ubuntu2 [271 kB] 98s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 98s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 98s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 98s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 98s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 98s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB] 98s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 98s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.3-1ubuntu1 [42.4 kB] 98s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 98s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 99s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 99s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 99s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 99s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 99s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 99s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.3-1ubuntu1 [9904 kB] 99s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.3-1ubuntu1 [32.0 kB] 99s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB] 99s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 99s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.3-1ubuntu1 [129 kB] 99s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 99s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB] 99s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.3-1ubuntu1 [34.4 kB] 99s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 99s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 99s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 99s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 99s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.3-1ubuntu1 [153 kB] 99s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 99s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 99s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 99s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 99s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 99s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 99s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 99s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 99s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 99s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 99s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 99s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.13.0-1 [98.6 kB] 99s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.13.0-1 [25.1 kB] 99s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.26.2-1 [22.8 kB] 99s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [14.4 kB] 99s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.26.2-1 [137 kB] 99s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 99s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 99s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 99s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 99s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 99s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 99s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu1 [2036 kB] 99s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu1 [221 kB] 99s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 99s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu1 [724 kB] 99s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 99s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 99s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.0-1build3 [10.7 kB] 99s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 99s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.0-1build4 [7956 B] 99s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 100s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.9-1build4 [9608 B] 100s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 100s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 100s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 100s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 100s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1build1 [14.5 kB] 100s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 100s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu1 [3791 kB] 100s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu1 [2561 kB] 100s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-1ubuntu1 [124 kB] 100s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5designer5 amd64 5.15.15-2 [2827 kB] 100s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-1ubuntu1 [122 kB] 100s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5help5 amd64 5.15.15-2 [161 kB] 100s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-1ubuntu1 [150 kB] 100s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-1ubuntu1 [208 kB] 100s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-1ubuntu1 [149 kB] 100s Get:89 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 100s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 100s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 100s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 100s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.sip amd64 12.15.0-1build1 [78.3 kB] 100s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-1build1 [2726 kB] 100s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-1build1 [129 kB] 100s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol-data all 3.0.0+dfsg-1 [1394 kB] 100s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymol amd64 3.0.0+dfsg-1 [4073 kB] 100s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol all 3.0.0+dfsg-1 [126 kB] 101s Fetched 48.4 MB in 2s (19.8 MB/s) 101s Selecting previously unselected package fonts-dejavu-mono. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75575 files and directories currently installed.) 101s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 101s Unpacking fonts-dejavu-mono (2.37-8) ... 101s Selecting previously unselected package fonts-dejavu-core. 101s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 101s Unpacking fonts-dejavu-core (2.37-8) ... 101s Selecting previously unselected package fontconfig-config. 101s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 101s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 101s Selecting previously unselected package libfontconfig1:amd64. 101s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 101s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 101s Selecting previously unselected package fontconfig. 101s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 101s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 101s Selecting previously unselected package libaec0:amd64. 101s Preparing to unpack .../05-libaec0_1.1.3-1_amd64.deb ... 101s Unpacking libaec0:amd64 (1.1.3-1) ... 101s Selecting previously unselected package libavahi-common-data:amd64. 101s Preparing to unpack .../06-libavahi-common-data_0.8-13ubuntu6_amd64.deb ... 101s Unpacking libavahi-common-data:amd64 (0.8-13ubuntu6) ... 101s Selecting previously unselected package libavahi-common3:amd64. 101s Preparing to unpack .../07-libavahi-common3_0.8-13ubuntu6_amd64.deb ... 101s Unpacking libavahi-common3:amd64 (0.8-13ubuntu6) ... 101s Selecting previously unselected package libavahi-client3:amd64. 101s Preparing to unpack .../08-libavahi-client3_0.8-13ubuntu6_amd64.deb ... 101s Unpacking libavahi-client3:amd64 (0.8-13ubuntu6) ... 101s Selecting previously unselected package libblas3:amd64. 101s Preparing to unpack .../09-libblas3_3.12.0-3build2_amd64.deb ... 101s Unpacking libblas3:amd64 (3.12.0-3build2) ... 101s Selecting previously unselected package libcups2t64:amd64. 101s Preparing to unpack .../10-libcups2t64_2.4.10-1ubuntu2_amd64.deb ... 101s Unpacking libcups2t64:amd64 (2.4.10-1ubuntu2) ... 101s Selecting previously unselected package libdouble-conversion3:amd64. 101s Preparing to unpack .../11-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 101s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 101s Selecting previously unselected package libdrm-amdgpu1:amd64. 101s Preparing to unpack .../12-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 101s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 101s Selecting previously unselected package libpciaccess0:amd64. 101s Preparing to unpack .../13-libpciaccess0_0.17-3build1_amd64.deb ... 101s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 101s Selecting previously unselected package libdrm-intel1:amd64. 101s Preparing to unpack .../14-libdrm-intel1_2.4.123-1_amd64.deb ... 101s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 101s Selecting previously unselected package libdrm-radeon1:amd64. 101s Preparing to unpack .../15-libdrm-radeon1_2.4.123-1_amd64.deb ... 101s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 101s Selecting previously unselected package libwayland-server0:amd64. 101s Preparing to unpack .../16-libwayland-server0_1.23.0-1_amd64.deb ... 101s Unpacking libwayland-server0:amd64 (1.23.0-1) ... 101s Selecting previously unselected package libxcb-randr0:amd64. 101s Preparing to unpack .../17-libxcb-randr0_1.17.0-2_amd64.deb ... 101s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 101s Selecting previously unselected package libglapi-mesa:amd64. 101s Preparing to unpack .../18-libglapi-mesa_24.2.3-1ubuntu1_amd64.deb ... 101s Unpacking libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 101s Selecting previously unselected package libx11-xcb1:amd64. 101s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 101s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 101s Selecting previously unselected package libxcb-dri2-0:amd64. 101s Preparing to unpack .../20-libxcb-dri2-0_1.17.0-2_amd64.deb ... 101s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ... 101s Selecting previously unselected package libxcb-dri3-0:amd64. 101s Preparing to unpack .../21-libxcb-dri3-0_1.17.0-2_amd64.deb ... 101s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 101s Selecting previously unselected package libxcb-present0:amd64. 101s Preparing to unpack .../22-libxcb-present0_1.17.0-2_amd64.deb ... 101s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 101s Selecting previously unselected package libxcb-sync1:amd64. 101s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_amd64.deb ... 101s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 102s Selecting previously unselected package libxcb-xfixes0:amd64. 102s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_amd64.deb ... 102s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 102s Selecting previously unselected package libxshmfence1:amd64. 102s Preparing to unpack .../25-libxshmfence1_1.3-1build5_amd64.deb ... 102s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 102s Selecting previously unselected package mesa-libgallium:amd64. 102s Preparing to unpack .../26-mesa-libgallium_24.2.3-1ubuntu1_amd64.deb ... 102s Unpacking mesa-libgallium:amd64 (24.2.3-1ubuntu1) ... 102s Selecting previously unselected package libgbm1:amd64. 102s Preparing to unpack .../27-libgbm1_24.2.3-1ubuntu1_amd64.deb ... 102s Unpacking libgbm1:amd64 (24.2.3-1ubuntu1) ... 102s Selecting previously unselected package libwayland-client0:amd64. 102s Preparing to unpack .../28-libwayland-client0_1.23.0-1_amd64.deb ... 102s Unpacking libwayland-client0:amd64 (1.23.0-1) ... 102s Selecting previously unselected package libxcb-shm0:amd64. 102s Preparing to unpack .../29-libxcb-shm0_1.17.0-2_amd64.deb ... 102s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 102s Selecting previously unselected package libegl-mesa0:amd64. 102s Preparing to unpack .../30-libegl-mesa0_24.2.3-1ubuntu1_amd64.deb ... 102s Unpacking libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 102s Selecting previously unselected package libgfortran5:amd64. 102s Preparing to unpack .../31-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 102s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libvulkan1:amd64. 102s Preparing to unpack .../32-libvulkan1_1.3.296.0-1_amd64.deb ... 102s Unpacking libvulkan1:amd64 (1.3.296.0-1) ... 102s Selecting previously unselected package libgl1-mesa-dri:amd64. 102s Preparing to unpack .../33-libgl1-mesa-dri_24.2.3-1ubuntu1_amd64.deb ... 102s Unpacking libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 102s Selecting previously unselected package libglvnd0:amd64. 102s Preparing to unpack .../34-libglvnd0_1.7.0-1build1_amd64.deb ... 102s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 102s Selecting previously unselected package libxcb-glx0:amd64. 102s Preparing to unpack .../35-libxcb-glx0_1.17.0-2_amd64.deb ... 102s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 102s Selecting previously unselected package libxfixes3:amd64. 102s Preparing to unpack .../36-libxfixes3_1%3a6.0.0-2build1_amd64.deb ... 102s Unpacking libxfixes3:amd64 (1:6.0.0-2build1) ... 102s Selecting previously unselected package libxxf86vm1:amd64. 102s Preparing to unpack .../37-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 102s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 102s Selecting previously unselected package libglx-mesa0:amd64. 102s Preparing to unpack .../38-libglx-mesa0_24.2.3-1ubuntu1_amd64.deb ... 102s Unpacking libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 102s Selecting previously unselected package libglx0:amd64. 102s Preparing to unpack .../39-libglx0_1.7.0-1build1_amd64.deb ... 102s Unpacking libglx0:amd64 (1.7.0-1build1) ... 102s Selecting previously unselected package libgl1:amd64. 102s Preparing to unpack .../40-libgl1_1.7.0-1build1_amd64.deb ... 102s Unpacking libgl1:amd64 (1.7.0-1build1) ... 102s Selecting previously unselected package libglew2.2:amd64. 102s Preparing to unpack .../41-libglew2.2_2.2.0-4build1_amd64.deb ... 102s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 102s Selecting previously unselected package libgomp1:amd64. 102s Preparing to unpack .../42-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 102s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 102s Selecting previously unselected package libgraphite2-3:amd64. 102s Preparing to unpack .../43-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 102s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 102s Selecting previously unselected package libharfbuzz0b:amd64. 102s Preparing to unpack .../44-libharfbuzz0b_10.0.1-1_amd64.deb ... 102s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 102s Selecting previously unselected package libsz2:amd64. 102s Preparing to unpack .../45-libsz2_1.1.3-1_amd64.deb ... 102s Unpacking libsz2:amd64 (1.1.3-1) ... 102s Selecting previously unselected package libhdf5-103-1t64:amd64. 102s Preparing to unpack .../46-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 102s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 102s Selecting previously unselected package libhdf5-hl-100t64:amd64. 102s Preparing to unpack .../47-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 102s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 102s Selecting previously unselected package x11-common. 102s Preparing to unpack .../48-x11-common_1%3a7.7+23ubuntu3_all.deb ... 102s Unpacking x11-common (1:7.7+23ubuntu3) ... 102s Selecting previously unselected package libice6:amd64. 102s Preparing to unpack .../49-libice6_2%3a1.1.1-1_amd64.deb ... 102s Unpacking libice6:amd64 (2:1.1.1-1) ... 102s Selecting previously unselected package libwacom-common. 102s Preparing to unpack .../50-libwacom-common_2.13.0-1_all.deb ... 102s Unpacking libwacom-common (2.13.0-1) ... 102s Selecting previously unselected package libwacom9:amd64. 102s Preparing to unpack .../51-libwacom9_2.13.0-1_amd64.deb ... 102s Unpacking libwacom9:amd64 (2.13.0-1) ... 102s Selecting previously unselected package libinput-bin. 102s Preparing to unpack .../52-libinput-bin_1.26.2-1_amd64.deb ... 102s Unpacking libinput-bin (1.26.2-1) ... 102s Selecting previously unselected package libmtdev1t64:amd64. 102s Preparing to unpack .../53-libmtdev1t64_1.1.6-1.2_amd64.deb ... 102s Unpacking libmtdev1t64:amd64 (1.1.6-1.2) ... 102s Selecting previously unselected package libinput10:amd64. 102s Preparing to unpack .../54-libinput10_1.26.2-1_amd64.deb ... 102s Unpacking libinput10:amd64 (1.26.2-1) ... 102s Selecting previously unselected package libjpeg-turbo8:amd64. 102s Preparing to unpack .../55-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 102s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 102s Selecting previously unselected package libjpeg8:amd64. 102s Preparing to unpack .../56-libjpeg8_8c-2ubuntu11_amd64.deb ... 102s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 102s Selecting previously unselected package liblapack3:amd64. 102s Preparing to unpack .../57-liblapack3_3.12.0-3build2_amd64.deb ... 102s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 103s Selecting previously unselected package libmd4c0:amd64. 103s Preparing to unpack .../58-libmd4c0_0.5.2-2_amd64.deb ... 103s Unpacking libmd4c0:amd64 (0.5.2-2) ... 103s Selecting previously unselected package libnetcdf19t64:amd64. 103s Preparing to unpack .../59-libnetcdf19t64_1%3a4.9.2-6ubuntu1_amd64.deb ... 103s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 103s Selecting previously unselected package libpcre2-16-0:amd64. 103s Preparing to unpack .../60-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 103s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 103s Selecting previously unselected package libqt5core5t64:amd64. 103s Preparing to unpack .../61-libqt5core5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 103s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 103s Selecting previously unselected package libqt5dbus5t64:amd64. 103s Preparing to unpack .../62-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 103s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 103s Selecting previously unselected package libegl1:amd64. 103s Preparing to unpack .../63-libegl1_1.7.0-1build1_amd64.deb ... 103s Unpacking libegl1:amd64 (1.7.0-1build1) ... 103s Selecting previously unselected package libqt5network5t64:amd64. 103s Preparing to unpack .../64-libqt5network5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 103s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 103s Selecting previously unselected package libsm6:amd64. 103s Preparing to unpack .../65-libsm6_2%3a1.2.4-1_amd64.deb ... 103s Unpacking libsm6:amd64 (2:1.2.4-1) ... 103s Selecting previously unselected package libxcb-icccm4:amd64. 103s Preparing to unpack .../66-libxcb-icccm4_0.4.2-1_amd64.deb ... 103s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 103s Selecting previously unselected package libxcb-util1:amd64. 103s Preparing to unpack .../67-libxcb-util1_0.4.0-1build3_amd64.deb ... 103s Unpacking libxcb-util1:amd64 (0.4.0-1build3) ... 103s Selecting previously unselected package libxcb-image0:amd64. 103s Preparing to unpack .../68-libxcb-image0_0.4.0-2build1_amd64.deb ... 103s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 103s Selecting previously unselected package libxcb-keysyms1:amd64. 103s Preparing to unpack .../69-libxcb-keysyms1_0.4.0-1build4_amd64.deb ... 103s Unpacking libxcb-keysyms1:amd64 (0.4.0-1build4) ... 103s Selecting previously unselected package libxcb-render0:amd64. 103s 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libqt5printsupport5t64:amd64. 103s Preparing to unpack .../85-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 103s Unpacking libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 103s Selecting previously unselected package libqt5test5t64:amd64. 103s Preparing to unpack .../86-libqt5test5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 103s Unpacking libqt5test5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 103s Selecting previously unselected package python3-numpy. 103s Preparing to unpack .../87-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 103s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 104s Selecting previously unselected package libopengl0:amd64. 104s Preparing to unpack .../88-libopengl0_1.7.0-1build1_amd64.deb ... 104s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 104s Selecting previously unselected package libglu1-mesa:amd64. 104s Preparing to unpack .../89-libglu1-mesa_9.0.2-1.1build1_amd64.deb ... 104s Unpacking libglu1-mesa:amd64 (9.0.2-1.1build1) ... 104s 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libxcb-render0:amd64 (1.17.0-2) ... 104s Setting up libdrm-radeon1:amd64 (2.4.123-1) ... 104s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 104s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 104s Setting up libdrm-intel1:amd64 (2.4.123-1) ... 104s Setting up libxcb-keysyms1:amd64 (0.4.0-1build4) ... 104s Setting up libxcb-shape0:amd64 (1.17.0-2) ... 104s Setting up x11-common (1:7.7+23ubuntu3) ... 105s Setting up libxcb-render-util0:amd64 (0.3.9-1build4) ... 105s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 105s Setting up libxcb-icccm4:amd64 (0.4.2-1) ... 105s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 105s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 105s Setting up libaec0:amd64 (1.1.3-1) ... 105s Setting up libopengl0:amd64 (1.7.0-1build1) ... 105s Setting up libxcb-util1:amd64 (0.4.0-1build3) ... 105s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 105s Setting up libxcb-xkb1:amd64 (1.17.0-2) ... 105s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 105s Setting up libxcb-present0:amd64 (1.17.0-2) ... 105s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 105s Setting up libblas3:amd64 (3.12.0-3build2) ... 105s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 105s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ... 105s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 105s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 105s Setting up libavahi-common-data:amd64 (0.8-13ubuntu6) ... 105s Setting up pymol-data (3.0.0+dfsg-1) ... 105s Setting up libxkbcommon-x11-0:amd64 (1.6.0-1build1) ... 105s Setting up fonts-dejavu-mono (2.37-8) ... 105s Setting up fonts-dejavu-core (2.37-8) ... 105s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 105s Setting up libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 105s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 105s Setting up libvulkan1:amd64 (1.3.296.0-1) ... 105s Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... 105s Setting up python3-pyqt5.sip (12.15.0-1build1) ... 105s Setting up libmtdev1t64:amd64 (1.1.6-1.2) ... 105s Setting up libxshmfence1:amd64 (1.3-1build5) ... 105s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 105s Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 105s Setting up libmd4c0:amd64 (0.5.2-2) ... 105s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 105s Setting up libglu1-mesa:amd64 (9.0.2-1.1build1) ... 105s Setting up libsz2:amd64 (1.1.3-1) ... 105s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 105s Setting up libwacom-common (2.13.0-1) ... 105s Setting up libwayland-client0:amd64 (1.23.0-1) ... 105s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 105s Setting up libice6:amd64 (2:1.1.1-1) ... 105s Setting up mesa-libgallium:amd64 (24.2.3-1ubuntu1) ... 105s Setting up liblapack3:amd64 (3.12.0-3build2) ... 105s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 105s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 105s Setting up libgbm1:amd64 (24.2.3-1ubuntu1) ... 105s Setting up libwacom9:amd64 (2.13.0-1) ... 105s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 105s Setting up libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 105s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 105s Setting up libavahi-common3:amd64 (0.8-13ubuntu6) ... 105s Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 105s Setting up libqt5test5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 105s Setting up libinput-bin (1.26.2-1) ... 105s Setting up libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 105s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 106s Setting up libegl1:amd64 (1.7.0-1build1) ... 106s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 106s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 106s Setting up libsm6:amd64 (2:1.2.4-1) ... 106s Setting up libavahi-client3:amd64 (0.8-13ubuntu6) ... 106s Setting up libinput10:amd64 (1.26.2-1) ... 106s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 106s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 108s Regenerating fonts cache... done. 108s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 108s Setting up libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 108s Setting up libglx0:amd64 (1.7.0-1build1) ... 108s Setting up libgl1:amd64 (1.7.0-1build1) ... 108s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 108s Setting up libcups2t64:amd64 (2.4.10-1ubuntu2) ... 108s Setting up python3-opengl (3.1.7+dfsg-1) ... 109s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 109s '''OpenGL extension AMD.vertex_shader_tessellator 110s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 110s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 110s Setting up libqt5help5:amd64 (5.15.15-2) ... 110s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 110s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 110s Setting up libqt5designer5:amd64 (5.15.15-2) ... 110s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 110s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 110s Setting up python3-pymol (3.0.0+dfsg-1) ... 110s Setting up pymol (3.0.0+dfsg-1) ... 110s Setting up autopkgtest-satdep (0) ... 110s Processing triggers for man-db (2.13.0-1) ... 111s Processing triggers for udev (256.5-2ubuntu4) ... 111s Processing triggers for libc-bin (2.40-1ubuntu3) ... 116s (Reading database ... 81779 files and directories currently installed.) 116s Removing autopkgtest-satdep (0) ... 116s autopkgtest [11:38:23]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 116s autopkgtest [11:38:23]: test command1: [----------------------- 116s Search pymol scripts in /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples... 116s Processing new directory /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples 116s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/chempy/generate_amber.py'... 117s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/chempy/generate_mmff.py'... 117s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/area_diff.pml'... 117s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/build_peptide.py'... 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/contact.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/dali.py 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/density.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/groel_es.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/multiclip_ray.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/packing.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/packsurf.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/ref_frame.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/ribosome.pml 117s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/scenes2movie.pml 117s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/seq_match_sele.pml'... 119s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/ss_xfer.pml 119s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/symsph.py'... 119s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/brick01.py'... 120s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo01.py'... 120s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo02.py'... 123s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo03.py'... 126s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo04.py'... 126s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo05.py'... 126s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo06.py'... 128s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo07.py'... 128s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo08.py'... 128s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_3Dtext01.py'... 128s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_axes.py'... 129s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_label_hack.py'... 132s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_plane.py'... 132s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/chempy_model01.py'... 132s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/chempy_model02.py'... 132s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/chempy_model03.py'... 135s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/click_ordered_list.py'... 135s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/count_molecules.py'... 136s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/extend_demo01.py'... 136s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/gl01.py'... 136s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/gl02.py'... 136s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/gl03.py'... 140s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/importing.py 140s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/link_demo.py'... 140s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/membrane.py'... 140s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/mutate01.pml'... 140s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/mutate02.py'... 141s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/my_ext_gui.py'... 141s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/particle01.py'... 142s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/particle02.py'... 142s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/pick_wiz.py'... 142s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/povray01.py 142s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/scenes_to_movie01.pml'... 142s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/sd_annotate.pml 142s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/sele_wiz.py'... 142s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/start_pymol.py 142s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/syncmol.py'... 143s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/tkwindow.py 143s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/webgui01.py'... 143s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/webgui02.py'... 143s /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 143s mo = re.search("molid\=([A-Z0-9]+)",self.path) 143s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/xmlrpc01.py 143s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/xmlrpc02.py'... 143s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/launching/launch_demo.py'... 143s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/launching/launch_viewer1.py'... 143s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/launching/launch_viewer2.py'... 143s Processing new directory /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/chempy 143s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/chempy/generate_amber.py'... 144s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/chempy/generate_mmff.py'... 144s Processing new directory /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook 144s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/area_diff.pml'... 144s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/build_peptide.py'... 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/contact.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/dali.py 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/density.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/groel_es.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/multiclip_ray.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/packing.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/packsurf.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/ref_frame.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/ribosome.pml 144s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/scenes2movie.pml 145s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/seq_match_sele.pml'... 146s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/ss_xfer.pml 146s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/cookbook/symsph.py'... 147s Processing new directory /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel 147s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/brick01.py'... 147s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo01.py'... 147s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo02.py'... 150s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo03.py'... 153s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo04.py'... 153s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo05.py'... 154s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo06.py'... 155s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo07.py'... 155s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo08.py'... 156s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_3Dtext01.py'... 156s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_axes.py'... 156s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_label_hack.py'... 159s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/cgo_plane.py'... 159s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/chempy_model01.py'... 159s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/chempy_model02.py'... 159s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/chempy_model03.py'... 163s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/click_ordered_list.py'... 163s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/count_molecules.py'... 163s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/extend_demo01.py'... 163s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/gl01.py'... 163s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/gl02.py'... 164s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/gl03.py'... 167s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/importing.py 167s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/link_demo.py'... 167s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/membrane.py'... 167s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/mutate01.pml'... 168s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/mutate02.py'... 169s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/my_ext_gui.py'... 169s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/particle01.py'... 169s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/particle02.py'... 169s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/pick_wiz.py'... 170s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/povray01.py 170s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/scenes_to_movie01.pml'... 170s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/sd_annotate.pml 170s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/sele_wiz.py'... 170s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/start_pymol.py 170s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/syncmol.py'... 170s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/tkwindow.py 170s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/webgui01.py'... 170s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/webgui02.py'... 170s /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 170s mo = re.search("molid\=([A-Z0-9]+)",self.path) 170s Skip /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/xmlrpc01.py 170s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/devel/xmlrpc02.py'... 170s Processing new directory /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/launching 170s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/launching/launch_demo.py'... 171s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/launching/launch_viewer1.py'... 171s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/examples/launching/launch_viewer2.py'... 171s autopkgtest [11:39:18]: test command1: -----------------------] 172s command1 PASS (superficial) 172s autopkgtest [11:39:19]: test command1: - - - - - - - - - - results - - - - - - - - - - 172s autopkgtest [11:39:19]: test command2: preparing testbed 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 175s The following NEW packages will be installed: 175s autopkgtest-satdep 175s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 175s Need to get 0 B/700 B of archives. 175s After this operation, 0 B of additional disk space will be used. 175s Get:1 /tmp/autopkgtest.hNFZqW/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 175s Selecting previously unselected package autopkgtest-satdep. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81779 files and directories currently installed.) 175s Preparing to unpack .../2-autopkgtest-satdep.deb ... 175s Unpacking autopkgtest-satdep (0) ... 175s Setting up autopkgtest-satdep (0) ... 177s (Reading database ... 81779 files and directories currently installed.) 177s Removing autopkgtest-satdep (0) ... 177s autopkgtest [11:39:24]: test command2: sh debian/tests/call-pymol-scripts data/demo 177s autopkgtest [11:39:24]: test command2: [----------------------- 178s Search pymol scripts in /tmp/autopkgtest.hNFZqW/build.7Yv/src/data/demo... 178s Processing new directory /tmp/autopkgtest.hNFZqW/build.7Yv/src/data/demo 178s Run 'pymol -c /tmp/autopkgtest.hNFZqW/build.7Yv/src/data/demo/cgo03.py'... 181s autopkgtest [11:39:28]: test command2: -----------------------] 182s command2 PASS (superficial) 182s autopkgtest [11:39:29]: test command2: - - - - - - - - - - results - - - - - - - - - - 182s autopkgtest [11:39:29]: test command3: preparing testbed 184s Reading package lists... 185s Building dependency tree... 185s Reading state information... 185s Starting pkgProblemResolver with broken count: 0 185s Starting 2 pkgProblemResolver with broken count: 0 185s Done 185s The following NEW packages will be installed: 185s autopkgtest-satdep 185s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 185s Need to get 0 B/704 B of archives. 185s After this operation, 0 B of additional disk space will be used. 185s Get:1 /tmp/autopkgtest.hNFZqW/3-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 185s Selecting previously unselected package autopkgtest-satdep. 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81779 files and directories currently installed.) 185s Preparing to unpack .../3-autopkgtest-satdep.deb ... 185s Unpacking autopkgtest-satdep (0) ... 185s Setting up autopkgtest-satdep (0) ... 187s (Reading database ... 81779 files and directories currently installed.) 187s Removing autopkgtest-satdep (0) ... 188s autopkgtest [11:39:35]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 188s autopkgtest [11:39:35]: test command3: [----------------------- 188s Search pymol scripts in /usr/share/pymol/examples... 188s Processing new directory /usr/share/pymol/examples 188s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 188s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 188s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 188s Skip /usr/share/pymol/examples/cookbook/contact.pml 188s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 188s Skip /usr/share/pymol/examples/cookbook/packing.pml 188s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 188s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 188s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 188s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 188s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 188s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 188s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 189s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 192s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 195s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 195s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 195s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 201s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 201s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 201s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 201s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 204s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 204s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 205s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 205s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 205s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 205s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 208s Skip /usr/share/pymol/examples/devel/importing.py 208s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 209s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 209s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 209s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 210s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 210s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 211s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 211s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 212s Skip /usr/share/pymol/examples/devel/tkwindow.py 212s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 212s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 212s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 212s mo = re.search("molid\=([A-Z0-9]+)",self.path) 212s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 212s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 212s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 212s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 212s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 212s Processing new directory /usr/share/pymol/examples/chempy 212s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 213s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 213s Processing new directory /usr/share/pymol/examples/cookbook 213s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 213s Skip /usr/share/pymol/examples/cookbook/contact.pml 213s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 213s Skip /usr/share/pymol/examples/cookbook/packing.pml 213s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 213s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 213s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 213s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 213s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 213s Processing new directory /usr/share/pymol/examples/devel 213s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 216s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 220s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 220s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 220s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 226s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 229s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 230s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 233s Skip /usr/share/pymol/examples/devel/importing.py 233s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 233s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 233s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 234s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 235s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 236s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 236s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 236s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 236s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 236s Skip /usr/share/pymol/examples/devel/tkwindow.py 236s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 236s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 236s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 236s mo = re.search("molid\=([A-Z0-9]+)",self.path) 236s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 236s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 236s Processing new directory /usr/share/pymol/examples/launching 236s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 237s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 237s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 237s autopkgtest [11:40:24]: test command3: -----------------------] 238s command3 PASS (superficial) 238s autopkgtest [11:40:25]: test command3: - - - - - - - - - - results - - - - - - - - - - 238s autopkgtest [11:40:25]: test command4: preparing testbed 240s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s Starting pkgProblemResolver with broken count: 0 241s Starting 2 pkgProblemResolver with broken count: 0 241s Done 241s The following NEW packages will be installed: 241s autopkgtest-satdep 241s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 241s Need to get 0 B/700 B of archives. 241s After this operation, 0 B of additional disk space will be used. 241s Get:1 /tmp/autopkgtest.hNFZqW/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 241s Selecting previously unselected package autopkgtest-satdep. 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81779 files and directories currently installed.) 242s Preparing to unpack .../4-autopkgtest-satdep.deb ... 242s Unpacking autopkgtest-satdep (0) ... 242s Setting up autopkgtest-satdep (0) ... 243s (Reading database ... 81779 files and directories currently installed.) 243s Removing autopkgtest-satdep (0) ... 244s autopkgtest [11:40:31]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 244s autopkgtest [11:40:31]: test command4: [----------------------- 244s Search pymol scripts in /usr/share/pymol/examples/cookbook... 244s Processing new directory /usr/share/pymol/examples/cookbook 244s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 245s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 246s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 246s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 247s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 269s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 271s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 271s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 273s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 275s autopkgtest [11:41:02]: test command4: -----------------------] 275s autopkgtest [11:41:02]: test command4: - - - - - - - - - - results - - - - - - - - - - 275s command4 PASS (superficial) 276s autopkgtest [11:41:03]: test command5: preparing testbed 279s Reading package lists... 279s Building dependency tree... 279s Reading state information... 279s Starting pkgProblemResolver with broken count: 0 279s Starting 2 pkgProblemResolver with broken count: 0 279s Done 279s The following NEW packages will be installed: 279s autopkgtest-satdep 279s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 279s Need to get 0 B/700 B of archives. 279s After this operation, 0 B of additional disk space will be used. 279s Get:1 /tmp/autopkgtest.hNFZqW/5-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 280s Selecting previously unselected package autopkgtest-satdep. 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81779 files and directories currently installed.) 280s Preparing to unpack .../5-autopkgtest-satdep.deb ... 280s Unpacking autopkgtest-satdep (0) ... 280s Setting up autopkgtest-satdep (0) ... 281s (Reading database ... 81779 files and directories currently installed.) 281s Removing autopkgtest-satdep (0) ... 282s autopkgtest [11:41:09]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 282s autopkgtest [11:41:09]: test command5: [----------------------- 282s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 282s Copyright (c) Schrodinger, LLC. 282s All Rights Reserved. 282s 282s Created by Warren L. DeLano, Ph.D. 282s 282s PyMOL is user-supported open-source software. Although some versions 282s are freely available, PyMOL is not in the public domain. 282s 282s If PyMOL is helpful in your work or study, then please volunteer 282s support for our ongoing efforts to create open and affordable scientific 282s software by purchasing a PyMOL Maintenance and/or Support subscription. 282s 282s More information can be found at "http://www.pymol.org". 282s 282s Enter "help" for a list of commands. 282s Enter "help " for information on a specific command. 282s 282s Hit ESC anytime to toggle between text and graphics. 282s 282s Setting: wizard_prompt_mode set to 3. 282s Detected 2 CPU cores. Enabled multithreaded rendering. 282s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 282s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 282s PyMOL>wizard annotation 282s PyMOL>set wizard_prompt_mode,3 282s PyMOL>load_annotated_sdf demo.sdf 282s HBA ['[1, 25, 26, 34]\n'] 282s HBD ['[20]\n'] 282s ACD_NUMBER ['MFCD02681585\n'] 282s SCORE ['-222.044\n'] 282s MOLID ['MFCD02681585\n'] 282s HBA ['[1, 21]\n'] 282s HBD ['[]\n'] 282s ACD_NUMBER ['MFCD01567969\n'] 282s SCORE ['-219.984\n'] 282s MOLID ['MFCD01567969\n'] 282s HBA ['[1, 24]\n'] 282s HBD ['[10, 22]\n'] 282s ACD_NUMBER ['MFCD00023789\n'] 282s SCORE ['-219.911\n'] 282s MOLID ['MFCD00023789\n'] 282s HBA ['[1, 11]\n'] 282s HBD ['[3]\n'] 282s ACD_NUMBER ['MFCD02579443\n'] 282s SCORE ['-219.769\n'] 282s MOLID ['MFCD02579443\n'] 282s HBA ['[1, 11]\n'] 282s HBD ['[9]\n'] 282s ACD_NUMBER ['MFCD02579410\n'] 282s SCORE ['-214.809\n'] 282s MOLID ['MFCD02579410\n'] 282s HBA ['[1, 20, 22, 27, 32]\n'] 282s HBD ['[10, 20]\n'] 282s ACD_NUMBER ['MFCD02579135\n'] 282s SCORE ['-213.630\n'] 282s MOLID ['MFCD02579135\n'] 282s HBA ['[1, 11, 14, 21]\n'] 282s HBD ['[]\n'] 282s ACD_NUMBER ['MFCD02681468\n'] 282s SCORE ['-213.462\n'] 282s MOLID ['MFCD02681468\n'] 282s HBA ['[1, 13, 14, 29]\n'] 282s HBD ['[]\n'] 282s ACD_NUMBER ['MFCD00141070\n'] 282s SCORE ['-213.240\n'] 282s MOLID ['MFCD00141070\n'] 282s HBA ['[1, 8]\n'] 282s HBD ['[]\n'] 282s ACD_NUMBER ['MFCD02983625\n'] 282s SCORE ['-211.422\n'] 282s MOLID ['MFCD02983625\n'] 282s HBA ['[1, 11]\n'] 282s HBD ['[3, 12]\n'] 282s ACD_NUMBER ['MFCD00115818\n'] 282s SCORE ['-210.482\n'] 282s MOLID ['MFCD00115818\n'] 283s autopkgtest [11:41:10]: test command5: -----------------------] 283s command5 PASS (superficial) 283s autopkgtest [11:41:10]: test command5: - - - - - - - - - - results - - - - - - - - - - 283s autopkgtest [11:41:10]: @@@@@@@@@@@@@@@@@@@@ summary 283s command1 PASS (superficial) 283s command2 PASS (superficial) 283s command3 PASS (superficial) 283s command4 PASS (superficial) 283s command5 PASS (superficial) 296s nova [W] Skipping flock for amd64 296s Creating nova instance adt-plucky-amd64-pymol-20241115-113627-juju-7f2275-prod-proposed-migration-environment-15-c4ba3a9d-c1e4-4ef0-bed7-d8e6617c2b1e from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...