0s autopkgtest [22:26:22]: starting date and time: 2024-11-14 22:26:22+0000 0s autopkgtest [22:26:22]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [22:26:22]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m42ez0u3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libxml2 --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libxml2/2.12.7+dfsg+really2.9.14-0.2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-3.secgroup --name adt-plucky-amd64-pymol-20241114-222622-juju-7f2275-prod-proposed-migration-environment-15-135d97cc-5b4f-44cd-b5ea-7fd1f8bd0cc2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 41s autopkgtest [22:27:03]: testbed dpkg architecture: amd64 41s autopkgtest [22:27:03]: testbed apt version: 2.9.8 41s autopkgtest [22:27:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 42s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 43s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [102 kB] 43s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 43s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1025 kB] 43s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [77.0 kB] 44s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 44s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 44s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [803 kB] 44s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 44s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 45s Fetched 2583 kB in 2s (1143 kB/s) 45s Reading package lists... 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Calculating upgrade... 47s The following packages will be upgraded: 47s libcap-ng0 libxml2 pastebinit python3-systemd 48s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 48s Need to get 849 kB of archives. 48s After this operation, 558 kB of additional disk space will be used. 48s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2build1 [772 kB] 48s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 48s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 48s Fetched 849 kB in 1s (1254 kB/s) 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 49s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 49s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 49s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 49s Preparing to unpack .../libxml2_2.12.7+dfsg+really2.9.14-0.2build1_amd64.deb ... 49s Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) over (2.12.7+dfsg-3) ... 49s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 49s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 49s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 49s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 49s Setting up pastebinit (1.7.1-1) ... 49s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 49s Setting up python3-systemd (235-1build5) ... 49s Processing triggers for man-db (2.12.1-3) ... 49s Processing triggers for libc-bin (2.40-1ubuntu3) ... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s autopkgtest [22:27:18]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 57s autopkgtest [22:27:19]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 77s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B] 77s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB] 77s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB] 77s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC 77s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 77s gpgv: issuer "emollier@debian.org" 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found 78s autopkgtest [22:27:40]: testing package pymol version 3.0.0+dfsg-1 78s autopkgtest [22:27:40]: build not needed 81s autopkgtest [22:27:43]: test command1: preparing testbed 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Starting pkgProblemResolver with broken count: 0 84s Starting 2 pkgProblemResolver with broken count: 0 84s Done 84s The following additional packages will be installed: 84s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 84s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 84s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libdrm-radeon1 84s libegl-mesa0 libegl1 libfontconfig1 libgbm1 libgfortran5 libgl1 84s libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 84s libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 84s libhdf5-hl-100t64 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 84s liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 libpciaccess0 84s libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 84s libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 84s libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 84s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 84s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 84s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 84s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 84s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 84s libxfixes3 libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 84s mesa-libgallium pymol pymol-data python3-numpy python3-opengl python3-pymol 84s python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 84s Suggested packages: 84s cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins 84s libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest 84s libgle3 python3-tk 84s Recommended packages: 84s libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme 84s qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc 84s | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers 84s | vulkan-icd apbs libglut-dev 84s The following NEW packages will be installed: 84s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 84s fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data 84s libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1 84s libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libgbm1 84s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa 84s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 84s libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin libinput10 84s libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf19t64 84s libopengl0 libpciaccess0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 84s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 84s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 84s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 84s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 84s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 84s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 84s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 84s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 84s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 84s python3-numpy python3-opengl python3-pymol python3-pyqt5 84s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 84s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 47.5 MB/47.5 MB of archives. 84s After this operation, 185 MB of additional disk space will be used. 84s Get:1 /tmp/autopkgtest.EV1qRE/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 85s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 85s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 86s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 86s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 86s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 86s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 86s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 86s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 86s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 86s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 86s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.10-1ubuntu2 [271 kB] 86s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 86s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 86s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 86s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 86s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 86s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB] 86s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 86s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.3-1ubuntu1 [42.4 kB] 86s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 86s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 86s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 86s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 86s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 86s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 86s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 86s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.3-1ubuntu1 [9904 kB] 88s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.3-1ubuntu1 [32.0 kB] 88s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB] 88s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 88s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.3-1ubuntu1 [129 kB] 88s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 88s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB] 88s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.3-1ubuntu1 [34.4 kB] 88s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 88s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 88s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 88s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 88s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.3-1ubuntu1 [153 kB] 88s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 88s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 88s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 88s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 88s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 88s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 88s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 88s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 89s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 89s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 89s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 89s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.13.0-1 [98.6 kB] 89s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.13.0-1 [25.1 kB] 89s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.26.2-1 [22.8 kB] 89s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [14.4 kB] 89s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.26.2-1 [137 kB] 89s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 89s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 89s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 89s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 89s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 89s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 89s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu1 [2036 kB] 89s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu1 [221 kB] 89s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 89s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu1 [724 kB] 89s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 89s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 89s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.0-1build3 [10.7 kB] 89s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 89s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.0-1build4 [7956 B] 89s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 89s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.9-1build4 [9608 B] 89s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 89s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 89s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 89s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 89s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1build1 [14.5 kB] 89s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 89s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu1 [3791 kB] 89s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu1 [2561 kB] 89s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-1ubuntu1 [124 kB] 89s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5designer5 amd64 5.15.15-2 [2827 kB] 90s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-1ubuntu1 [122 kB] 90s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5help5 amd64 5.15.15-2 [161 kB] 90s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-1ubuntu1 [150 kB] 90s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-1ubuntu1 [208 kB] 90s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-1ubuntu1 [149 kB] 90s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 90s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 90s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 90s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 90s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.sip amd64 12.15.0-1build1 [78.3 kB] 90s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-1build1 [2726 kB] 90s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-1build1 [129 kB] 90s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol-data all 3.0.0+dfsg-1 [1394 kB] 90s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymol amd64 3.0.0+dfsg-1 [4073 kB] 90s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol all 3.0.0+dfsg-1 [126 kB] 91s Fetched 47.5 MB in 6s (7943 kB/s) 91s Selecting previously unselected package fonts-dejavu-mono. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75547 files and directories currently installed.) 91s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 91s Unpacking fonts-dejavu-mono (2.37-8) ... 91s Selecting previously unselected package fonts-dejavu-core. 91s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 91s Unpacking fonts-dejavu-core (2.37-8) ... 91s Selecting previously unselected package fontconfig-config. 91s Preparing to unpack .../02-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 91s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 91s Selecting previously unselected package libfontconfig1:amd64. 91s Preparing to unpack .../03-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 91s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 91s Selecting previously unselected package fontconfig. 91s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 91s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 91s Selecting previously unselected package libaec0:amd64. 91s Preparing to unpack .../05-libaec0_1.1.3-1_amd64.deb ... 91s Unpacking libaec0:amd64 (1.1.3-1) ... 91s Selecting previously unselected package libavahi-common-data:amd64. 91s Preparing to unpack .../06-libavahi-common-data_0.8-13ubuntu6_amd64.deb ... 91s Unpacking libavahi-common-data:amd64 (0.8-13ubuntu6) ... 91s Selecting previously unselected package libavahi-common3:amd64. 91s Preparing to unpack .../07-libavahi-common3_0.8-13ubuntu6_amd64.deb ... 91s Unpacking libavahi-common3:amd64 (0.8-13ubuntu6) ... 91s Selecting previously unselected package libavahi-client3:amd64. 91s Preparing to unpack .../08-libavahi-client3_0.8-13ubuntu6_amd64.deb ... 91s Unpacking libavahi-client3:amd64 (0.8-13ubuntu6) ... 91s Selecting previously unselected package libblas3:amd64. 91s Preparing to unpack .../09-libblas3_3.12.0-3build2_amd64.deb ... 91s Unpacking libblas3:amd64 (3.12.0-3build2) ... 91s Selecting previously unselected package libcups2t64:amd64. 91s Preparing to unpack .../10-libcups2t64_2.4.10-1ubuntu2_amd64.deb ... 91s Unpacking libcups2t64:amd64 (2.4.10-1ubuntu2) ... 91s Selecting previously unselected package libdouble-conversion3:amd64. 91s Preparing to unpack .../11-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 91s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 91s Selecting previously unselected package libdrm-amdgpu1:amd64. 91s Preparing to unpack .../12-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 91s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 91s Selecting previously unselected package libpciaccess0:amd64. 91s Preparing to unpack .../13-libpciaccess0_0.17-3build1_amd64.deb ... 91s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 91s Selecting previously unselected package libdrm-intel1:amd64. 91s Preparing to unpack .../14-libdrm-intel1_2.4.123-1_amd64.deb ... 91s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 91s Selecting previously unselected package libdrm-radeon1:amd64. 91s Preparing to unpack .../15-libdrm-radeon1_2.4.123-1_amd64.deb ... 91s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 91s Selecting previously unselected package libwayland-server0:amd64. 91s Preparing to unpack .../16-libwayland-server0_1.23.0-1_amd64.deb ... 91s Unpacking libwayland-server0:amd64 (1.23.0-1) ... 91s Selecting previously unselected package libxcb-randr0:amd64. 91s Preparing to unpack .../17-libxcb-randr0_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 91s Selecting previously unselected package libglapi-mesa:amd64. 91s Preparing to unpack .../18-libglapi-mesa_24.2.3-1ubuntu1_amd64.deb ... 91s Unpacking libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 91s Selecting previously unselected package libx11-xcb1:amd64. 91s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 91s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 91s Selecting previously unselected package libxcb-dri2-0:amd64. 91s Preparing to unpack .../20-libxcb-dri2-0_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ... 91s Selecting previously unselected package libxcb-dri3-0:amd64. 91s Preparing to unpack .../21-libxcb-dri3-0_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 91s Selecting previously unselected package libxcb-present0:amd64. 91s Preparing to unpack .../22-libxcb-present0_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 91s Selecting previously unselected package libxcb-sync1:amd64. 91s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 91s Selecting previously unselected package libxcb-xfixes0:amd64. 91s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 92s Selecting previously unselected package libxshmfence1:amd64. 92s Preparing to unpack .../25-libxshmfence1_1.3-1build5_amd64.deb ... 92s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 92s Selecting previously unselected package mesa-libgallium:amd64. 92s Preparing to unpack .../26-mesa-libgallium_24.2.3-1ubuntu1_amd64.deb ... 92s Unpacking mesa-libgallium:amd64 (24.2.3-1ubuntu1) ... 92s Selecting previously unselected package libgbm1:amd64. 92s Preparing to unpack .../27-libgbm1_24.2.3-1ubuntu1_amd64.deb ... 92s Unpacking libgbm1:amd64 (24.2.3-1ubuntu1) ... 92s Selecting previously unselected package libwayland-client0:amd64. 92s Preparing to unpack .../28-libwayland-client0_1.23.0-1_amd64.deb ... 92s Unpacking libwayland-client0:amd64 (1.23.0-1) ... 92s Selecting previously unselected package libxcb-shm0:amd64. 92s Preparing to unpack .../29-libxcb-shm0_1.17.0-2_amd64.deb ... 92s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 92s Selecting previously unselected package libegl-mesa0:amd64. 92s Preparing to unpack .../30-libegl-mesa0_24.2.3-1ubuntu1_amd64.deb ... 92s Unpacking libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 92s Selecting previously unselected package libgfortran5:amd64. 92s Preparing to unpack .../31-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libvulkan1:amd64. 92s Preparing to unpack .../32-libvulkan1_1.3.296.0-1_amd64.deb ... 92s Unpacking libvulkan1:amd64 (1.3.296.0-1) ... 92s Selecting previously unselected package libgl1-mesa-dri:amd64. 92s Preparing to unpack .../33-libgl1-mesa-dri_24.2.3-1ubuntu1_amd64.deb ... 92s Unpacking libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 92s Selecting previously unselected package libglvnd0:amd64. 92s Preparing to unpack .../34-libglvnd0_1.7.0-1build1_amd64.deb ... 92s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 92s Selecting previously unselected package libxcb-glx0:amd64. 92s Preparing to unpack .../35-libxcb-glx0_1.17.0-2_amd64.deb ... 92s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 92s Selecting previously unselected package libxfixes3:amd64. 92s Preparing to unpack .../36-libxfixes3_1%3a6.0.0-2build1_amd64.deb ... 92s Unpacking libxfixes3:amd64 (1:6.0.0-2build1) ... 92s Selecting previously unselected package libxxf86vm1:amd64. 92s Preparing to unpack .../37-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 92s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 92s Selecting previously unselected package libglx-mesa0:amd64. 92s Preparing to unpack .../38-libglx-mesa0_24.2.3-1ubuntu1_amd64.deb ... 92s Unpacking libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 92s Selecting previously unselected package libglx0:amd64. 92s Preparing to unpack .../39-libglx0_1.7.0-1build1_amd64.deb ... 92s Unpacking libglx0:amd64 (1.7.0-1build1) ... 92s Selecting previously unselected package libgl1:amd64. 92s Preparing to unpack .../40-libgl1_1.7.0-1build1_amd64.deb ... 92s Unpacking libgl1:amd64 (1.7.0-1build1) ... 92s Selecting previously unselected package libglew2.2:amd64. 92s Preparing to unpack .../41-libglew2.2_2.2.0-4build1_amd64.deb ... 92s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 92s Selecting previously unselected package libgomp1:amd64. 92s Preparing to unpack .../42-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libgraphite2-3:amd64. 92s Preparing to unpack .../43-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 92s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 92s Selecting previously unselected package libharfbuzz0b:amd64. 92s Preparing to unpack .../44-libharfbuzz0b_10.0.1-1_amd64.deb ... 92s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 92s Selecting previously unselected package libsz2:amd64. 92s Preparing to unpack .../45-libsz2_1.1.3-1_amd64.deb ... 92s Unpacking libsz2:amd64 (1.1.3-1) ... 92s Selecting previously unselected package libhdf5-103-1t64:amd64. 92s Preparing to unpack .../46-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 92s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 92s Selecting previously unselected package libhdf5-hl-100t64:amd64. 92s Preparing to unpack .../47-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 92s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 92s Selecting previously unselected package x11-common. 92s Preparing to unpack .../48-x11-common_1%3a7.7+23ubuntu3_all.deb ... 92s Unpacking x11-common (1:7.7+23ubuntu3) ... 92s Selecting previously unselected package libice6:amd64. 92s Preparing to unpack .../49-libice6_2%3a1.1.1-1_amd64.deb ... 92s Unpacking libice6:amd64 (2:1.1.1-1) ... 92s Selecting previously unselected package libwacom-common. 92s Preparing to unpack .../50-libwacom-common_2.13.0-1_all.deb ... 92s Unpacking libwacom-common (2.13.0-1) ... 92s Selecting previously unselected package libwacom9:amd64. 92s Preparing to unpack .../51-libwacom9_2.13.0-1_amd64.deb ... 92s Unpacking libwacom9:amd64 (2.13.0-1) ... 92s Selecting previously unselected package libinput-bin. 92s Preparing to unpack .../52-libinput-bin_1.26.2-1_amd64.deb ... 92s Unpacking libinput-bin (1.26.2-1) ... 92s Selecting previously unselected package libmtdev1t64:amd64. 92s Preparing to unpack .../53-libmtdev1t64_1.1.6-1.2_amd64.deb ... 92s Unpacking libmtdev1t64:amd64 (1.1.6-1.2) ... 93s Selecting previously unselected package libinput10:amd64. 93s Preparing to unpack .../54-libinput10_1.26.2-1_amd64.deb ... 93s Unpacking libinput10:amd64 (1.26.2-1) ... 93s Selecting previously unselected package libjpeg-turbo8:amd64. 93s Preparing to unpack .../55-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 93s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 93s Selecting previously unselected package libjpeg8:amd64. 93s Preparing to unpack .../56-libjpeg8_8c-2ubuntu11_amd64.deb ... 93s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 93s Selecting previously unselected package liblapack3:amd64. 93s Preparing to unpack .../57-liblapack3_3.12.0-3build2_amd64.deb ... 93s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 93s Selecting previously unselected package libmd4c0:amd64. 93s Preparing to unpack .../58-libmd4c0_0.5.2-2_amd64.deb ... 93s Unpacking libmd4c0:amd64 (0.5.2-2) ... 93s Selecting previously unselected package libnetcdf19t64:amd64. 93s Preparing to unpack .../59-libnetcdf19t64_1%3a4.9.2-6ubuntu1_amd64.deb ... 93s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 93s Selecting previously unselected package libpcre2-16-0:amd64. 93s Preparing to unpack .../60-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 93s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 93s Selecting previously unselected package libqt5core5t64:amd64. 93s Preparing to unpack .../61-libqt5core5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 93s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 93s Selecting previously unselected package libqt5dbus5t64:amd64. 93s Preparing to unpack .../62-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 93s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 93s Selecting previously unselected package libegl1:amd64. 93s Preparing to unpack .../63-libegl1_1.7.0-1build1_amd64.deb ... 93s Unpacking libegl1:amd64 (1.7.0-1build1) ... 93s Selecting previously unselected package libqt5network5t64:amd64. 93s Preparing to unpack .../64-libqt5network5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 93s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 93s Selecting previously unselected package libsm6:amd64. 93s Preparing to unpack .../65-libsm6_2%3a1.2.4-1_amd64.deb ... 93s Unpacking libsm6:amd64 (2:1.2.4-1) ... 93s Selecting previously unselected package libxcb-icccm4:amd64. 93s Preparing to unpack .../66-libxcb-icccm4_0.4.2-1_amd64.deb ... 93s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 93s Selecting previously unselected package libxcb-util1:amd64. 93s Preparing to unpack .../67-libxcb-util1_0.4.0-1build3_amd64.deb ... 93s Unpacking libxcb-util1:amd64 (0.4.0-1build3) ... 93s Selecting previously unselected package libxcb-image0:amd64. 93s Preparing to unpack .../68-libxcb-image0_0.4.0-2build1_amd64.deb ... 93s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 93s Selecting previously unselected package libxcb-keysyms1:amd64. 93s Preparing to unpack .../69-libxcb-keysyms1_0.4.0-1build4_amd64.deb ... 93s Unpacking libxcb-keysyms1:amd64 (0.4.0-1build4) ... 93s Selecting previously unselected package libxcb-render0:amd64. 93s Preparing to unpack .../70-libxcb-render0_1.17.0-2_amd64.deb ... 93s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 93s Selecting previously unselected package libxcb-render-util0:amd64. 93s Preparing to unpack .../71-libxcb-render-util0_0.3.9-1build4_amd64.deb ... 93s Unpacking libxcb-render-util0:amd64 (0.3.9-1build4) ... 93s Selecting previously unselected package libxcb-shape0:amd64. 93s Preparing to unpack .../72-libxcb-shape0_1.17.0-2_amd64.deb ... 93s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 93s Selecting previously unselected package libxcb-xinerama0:amd64. 93s Preparing to unpack .../73-libxcb-xinerama0_1.17.0-2_amd64.deb ... 93s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 93s Selecting previously unselected package libxcb-xinput0:amd64. 93s Preparing to unpack .../74-libxcb-xinput0_1.17.0-2_amd64.deb ... 93s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ... 93s Selecting previously unselected package libxcb-xkb1:amd64. 93s Preparing to unpack .../75-libxcb-xkb1_1.17.0-2_amd64.deb ... 93s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ... 93s Selecting previously unselected package libxkbcommon-x11-0:amd64. 93s Preparing to unpack .../76-libxkbcommon-x11-0_1.6.0-1build1_amd64.deb ... 93s Unpacking libxkbcommon-x11-0:amd64 (1.6.0-1build1) ... 93s Selecting previously unselected package libxrender1:amd64. 93s Preparing to unpack .../77-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 93s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 93s Selecting previously unselected package libqt5gui5t64:amd64. 93s Preparing to unpack .../78-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 93s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 93s Selecting previously unselected package libqt5widgets5t64:amd64. 93s Preparing to unpack .../79-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 93s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 93s Selecting previously unselected package libqt5xml5t64:amd64. 93s Preparing to unpack .../80-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 93s Unpacking libqt5xml5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 93s Selecting previously unselected package libqt5designer5:amd64. 93s Preparing to unpack .../81-libqt5designer5_5.15.15-2_amd64.deb ... 93s Unpacking libqt5designer5:amd64 (5.15.15-2) ... 93s Selecting previously unselected package libqt5sql5t64:amd64. 93s Preparing to unpack .../82-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 93s Unpacking libqt5sql5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 93s Selecting previously unselected package libqt5help5:amd64. 94s Preparing to unpack .../83-libqt5help5_5.15.15-2_amd64.deb ... 94s Unpacking libqt5help5:amd64 (5.15.15-2) ... 94s Selecting previously unselected package libqt5opengl5t64:amd64. 94s Preparing to unpack .../84-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 94s Unpacking libqt5opengl5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 94s Selecting previously unselected package libqt5printsupport5t64:amd64. 94s Preparing to unpack .../85-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 94s Unpacking libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) 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unselected package python3-pyqt5.sip. 94s Preparing to unpack .../91-python3-pyqt5.sip_12.15.0-1build1_amd64.deb ... 94s Unpacking python3-pyqt5.sip (12.15.0-1build1) ... 94s Selecting previously unselected package python3-pyqt5. 94s Preparing to unpack .../92-python3-pyqt5_5.15.11+dfsg-1build1_amd64.deb ... 94s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 94s Selecting previously unselected package python3-pyqt5.qtopengl. 94s Preparing to unpack .../93-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_amd64.deb ... 94s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 94s Selecting previously unselected package pymol-data. 94s Preparing to unpack .../94-pymol-data_3.0.0+dfsg-1_all.deb ... 94s Unpacking pymol-data (3.0.0+dfsg-1) ... 94s Selecting previously unselected package python3-pymol. 94s Preparing to unpack .../95-python3-pymol_3.0.0+dfsg-1_amd64.deb ... 94s Unpacking python3-pymol (3.0.0+dfsg-1) ... 95s Selecting previously unselected package pymol. 95s Preparing to 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... 99s Setting up libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 99s Setting up libglx0:amd64 (1.7.0-1build1) ... 99s Setting up libgl1:amd64 (1.7.0-1build1) ... 99s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 99s Setting up libcups2t64:amd64 (2.4.10-1ubuntu2) ... 99s Setting up python3-opengl (3.1.7+dfsg-1) ... 99s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 99s '''OpenGL extension AMD.vertex_shader_tessellator 100s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 100s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 100s Setting up libqt5help5:amd64 (5.15.15-2) ... 100s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 100s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 100s Setting up libqt5designer5:amd64 (5.15.15-2) ... 100s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 100s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 100s Setting up python3-pymol (3.0.0+dfsg-1) ... 101s Setting up pymol (3.0.0+dfsg-1) ... 101s Setting up autopkgtest-satdep (0) ... 101s Processing triggers for man-db (2.12.1-3) ... 101s Processing triggers for udev (256.5-2ubuntu4) ... 101s Processing triggers for libc-bin (2.40-1ubuntu3) ... 105s (Reading database ... 81731 files and directories currently installed.) 105s Removing autopkgtest-satdep (0) ... 106s autopkgtest [22:28:08]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 106s autopkgtest [22:28:08]: test command1: [----------------------- 106s Search pymol scripts in /tmp/autopkgtest.EV1qRE/build.0XW/src/examples... 106s Processing new directory /tmp/autopkgtest.EV1qRE/build.0XW/src/examples 106s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/chempy/generate_amber.py'... 106s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/chempy/generate_mmff.py'... 106s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/area_diff.pml'... 107s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/build_peptide.py'... 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/contact.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/dali.py 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/density.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/groel_es.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/multiclip_ray.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/packing.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/packsurf.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/ref_frame.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/ribosome.pml 107s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/scenes2movie.pml 107s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/seq_match_sele.pml'... 109s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/ss_xfer.pml 109s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/symsph.py'... 109s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/brick01.py'... 109s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo01.py'... 109s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo02.py'... 112s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo03.py'... 115s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo04.py'... 115s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo05.py'... 116s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo06.py'... 117s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo07.py'... 117s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo08.py'... 117s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_3Dtext01.py'... 117s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_axes.py'... 117s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_label_hack.py'... 121s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_plane.py'... 121s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/chempy_model01.py'... 121s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/chempy_model02.py'... 121s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/chempy_model03.py'... 124s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/click_ordered_list.py'... 124s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/count_molecules.py'... 125s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/extend_demo01.py'... 125s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/gl01.py'... 125s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/gl02.py'... 125s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/gl03.py'... 128s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/importing.py 128s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/link_demo.py'... 129s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/membrane.py'... 129s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/mutate01.pml'... 129s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/mutate02.py'... 130s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/my_ext_gui.py'... 130s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/particle01.py'... 131s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/particle02.py'... 131s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/pick_wiz.py'... 131s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/povray01.py 131s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/scenes_to_movie01.pml'... 131s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/sd_annotate.pml 131s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/sele_wiz.py'... 131s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/start_pymol.py 131s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/syncmol.py'... 132s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/tkwindow.py 132s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/webgui01.py'... 132s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/webgui02.py'... 132s /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 132s mo = re.search("molid\=([A-Z0-9]+)",self.path) 132s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/xmlrpc01.py 132s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/xmlrpc02.py'... 132s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/launching/launch_demo.py'... 132s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/launching/launch_viewer1.py'... 132s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/launching/launch_viewer2.py'... 132s Processing new directory /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/chempy 132s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/chempy/generate_amber.py'... 133s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/chempy/generate_mmff.py'... 133s Processing new directory /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook 133s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/area_diff.pml'... 133s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/build_peptide.py'... 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/contact.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/dali.py 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/density.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/groel_es.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/multiclip_ray.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/packing.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/packsurf.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/ref_frame.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/ribosome.pml 133s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/scenes2movie.pml 133s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/seq_match_sele.pml'... 135s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/ss_xfer.pml 135s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/cookbook/symsph.py'... 135s Processing new directory /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel 135s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/brick01.py'... 135s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo01.py'... 136s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo02.py'... 139s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo03.py'... 142s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo04.py'... 142s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo05.py'... 142s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo06.py'... 143s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo07.py'... 144s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo08.py'... 144s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_3Dtext01.py'... 144s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_axes.py'... 144s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_label_hack.py'... 147s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/cgo_plane.py'... 147s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/chempy_model01.py'... 147s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/chempy_model02.py'... 148s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/chempy_model03.py'... 151s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/click_ordered_list.py'... 151s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/count_molecules.py'... 151s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/extend_demo01.py'... 151s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/gl01.py'... 152s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/gl02.py'... 152s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/gl03.py'... 155s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/importing.py 155s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/link_demo.py'... 155s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/membrane.py'... 156s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/mutate01.pml'... 156s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/mutate02.py'... 157s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/my_ext_gui.py'... 157s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/particle01.py'... 157s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/particle02.py'... 158s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/pick_wiz.py'... 158s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/povray01.py 158s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/scenes_to_movie01.pml'... 158s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/sd_annotate.pml 158s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/sele_wiz.py'... 158s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/start_pymol.py 158s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/syncmol.py'... 158s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/tkwindow.py 158s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/webgui01.py'... 158s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/webgui02.py'... 159s /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 159s mo = re.search("molid\=([A-Z0-9]+)",self.path) 159s Skip /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/xmlrpc01.py 159s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/devel/xmlrpc02.py'... 159s Processing new directory /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/launching 159s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/launching/launch_demo.py'... 159s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/launching/launch_viewer1.py'... 159s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/examples/launching/launch_viewer2.py'... 159s autopkgtest [22:29:01]: test command1: -----------------------] 160s command1 PASS (superficial) 160s autopkgtest [22:29:02]: test command1: - - - - - - - - - - results - - - - - - - - - - 160s autopkgtest [22:29:02]: test command2: preparing testbed 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s Starting pkgProblemResolver with broken count: 0 164s Starting 2 pkgProblemResolver with broken count: 0 164s Done 165s The following NEW packages will be installed: 165s autopkgtest-satdep 165s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 165s Need to get 0 B/704 B of archives. 165s After this operation, 0 B of additional disk space will be used. 165s Get:1 /tmp/autopkgtest.EV1qRE/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 165s Selecting previously unselected package autopkgtest-satdep. 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81731 files and directories currently installed.) 165s Preparing to unpack .../2-autopkgtest-satdep.deb ... 165s Unpacking autopkgtest-satdep (0) ... 165s Setting up autopkgtest-satdep (0) ... 167s (Reading database ... 81731 files and directories currently installed.) 167s Removing autopkgtest-satdep (0) ... 167s autopkgtest [22:29:09]: test command2: sh debian/tests/call-pymol-scripts data/demo 167s autopkgtest [22:29:09]: test command2: [----------------------- 167s Search pymol scripts in /tmp/autopkgtest.EV1qRE/build.0XW/src/data/demo... 167s Processing new directory /tmp/autopkgtest.EV1qRE/build.0XW/src/data/demo 167s Run 'pymol -c /tmp/autopkgtest.EV1qRE/build.0XW/src/data/demo/cgo03.py'... 171s autopkgtest [22:29:13]: test command2: -----------------------] 171s command2 PASS (superficial) 171s autopkgtest [22:29:13]: test command2: - - - - - - - - - - results - - - - - - - - - - 172s autopkgtest [22:29:14]: test command3: preparing testbed 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 174s The following NEW packages will be installed: 174s autopkgtest-satdep 174s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 0 B/704 B of archives. 174s After this operation, 0 B of additional disk space will be used. 174s Get:1 /tmp/autopkgtest.EV1qRE/3-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 174s Selecting previously unselected package autopkgtest-satdep. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81731 files and directories currently installed.) 174s Preparing to unpack .../3-autopkgtest-satdep.deb ... 174s Unpacking autopkgtest-satdep (0) ... 174s Setting up autopkgtest-satdep (0) ... 176s (Reading database ... 81731 files and directories currently installed.) 176s Removing autopkgtest-satdep (0) ... 177s autopkgtest [22:29:19]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 177s autopkgtest [22:29:19]: test command3: [----------------------- 177s Search pymol scripts in /usr/share/pymol/examples... 177s Processing new directory /usr/share/pymol/examples 177s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 177s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 177s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 177s Skip /usr/share/pymol/examples/cookbook/contact.pml 177s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 177s Skip /usr/share/pymol/examples/cookbook/packing.pml 177s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 177s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 177s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 177s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 177s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 177s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 177s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 177s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 181s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 184s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 184s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 184s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 185s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 185s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 186s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 186s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 186s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 189s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 189s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 189s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 189s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 193s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 194s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 197s Skip /usr/share/pymol/examples/devel/importing.py 197s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 200s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 200s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 200s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 200s Skip /usr/share/pymol/examples/devel/tkwindow.py 200s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 200s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 200s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 200s mo = re.search("molid\=([A-Z0-9]+)",self.path) 200s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 200s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 200s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 200s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 201s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 201s Processing new directory /usr/share/pymol/examples/chempy 201s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 201s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 201s Processing new directory /usr/share/pymol/examples/cookbook 201s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 201s Skip /usr/share/pymol/examples/cookbook/contact.pml 201s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 201s Skip /usr/share/pymol/examples/cookbook/packing.pml 201s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 201s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 201s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 201s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 201s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 201s Processing new directory /usr/share/pymol/examples/devel 201s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 201s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 201s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 204s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 208s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 208s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 208s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 209s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 209s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 209s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 210s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 210s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 217s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 218s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 221s Skip /usr/share/pymol/examples/devel/importing.py 221s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 221s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 222s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 224s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 224s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 224s Skip /usr/share/pymol/examples/devel/tkwindow.py 224s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 224s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 224s mo = re.search("molid\=([A-Z0-9]+)",self.path) 224s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 224s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 225s Processing new directory /usr/share/pymol/examples/launching 225s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 225s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 225s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 225s autopkgtest [22:30:07]: test command3: -----------------------] 226s command3 PASS (superficial) 226s autopkgtest [22:30:08]: test command3: - - - - - - - - - - results - - - - - - - - - - 226s autopkgtest [22:30:08]: test command4: preparing testbed 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 229s Starting pkgProblemResolver with broken count: 0 229s Starting 2 pkgProblemResolver with broken count: 0 229s Done 230s The following NEW packages will be installed: 230s autopkgtest-satdep 230s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 230s Need to get 0 B/700 B of archives. 230s After this operation, 0 B of additional disk space will be used. 230s Get:1 /tmp/autopkgtest.EV1qRE/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 230s Selecting previously unselected package autopkgtest-satdep. 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81731 files and directories currently installed.) 230s Preparing to unpack .../4-autopkgtest-satdep.deb ... 230s Unpacking autopkgtest-satdep (0) ... 230s Setting up autopkgtest-satdep (0) ... 232s (Reading database ... 81731 files and directories currently installed.) 232s Removing autopkgtest-satdep (0) ... 232s autopkgtest [22:30:14]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 232s autopkgtest [22:30:14]: test command4: [----------------------- 232s Search pymol scripts in /usr/share/pymol/examples/cookbook... 233s Processing new directory /usr/share/pymol/examples/cookbook 233s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 233s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 234s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 234s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 235s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 257s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 259s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 259s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 261s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 262s autopkgtest [22:30:44]: test command4: -----------------------] 263s command4 PASS (superficial) 263s autopkgtest [22:30:45]: test command4: - - - - - - - - - - results - - - - - - - - - - 263s autopkgtest [22:30:45]: test command5: preparing testbed 267s Reading package lists... 267s Building dependency tree... 267s Reading state information... 267s Starting pkgProblemResolver with broken count: 0 267s Starting 2 pkgProblemResolver with broken count: 0 267s Done 267s The following NEW packages will be installed: 267s autopkgtest-satdep 267s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 267s Need to get 0 B/700 B of archives. 267s After this operation, 0 B of additional disk space will be used. 267s Get:1 /tmp/autopkgtest.EV1qRE/5-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 268s Selecting previously unselected package autopkgtest-satdep. 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81731 files and directories currently installed.) 268s Preparing to unpack .../5-autopkgtest-satdep.deb ... 268s Unpacking autopkgtest-satdep (0) ... 268s Setting up autopkgtest-satdep (0) ... 269s (Reading database ... 81731 files and directories currently installed.) 269s Removing autopkgtest-satdep (0) ... 271s autopkgtest [22:30:53]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 271s autopkgtest [22:30:53]: test command5: [----------------------- 271s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 271s Copyright (c) Schrodinger, LLC. 271s All Rights Reserved. 271s 271s Created by Warren L. DeLano, Ph.D. 271s 271s PyMOL is user-supported open-source software. Although some versions 271s are freely available, PyMOL is not in the public domain. 271s 271s If PyMOL is helpful in your work or study, then please volunteer 271s support for our ongoing efforts to create open and affordable scientific 271s software by purchasing a PyMOL Maintenance and/or Support subscription. 271s 271s More information can be found at "http://www.pymol.org". 271s 271s Enter "help" for a list of commands. 271s Enter "help " for information on a specific command. 271s 271s Hit ESC anytime to toggle between text and graphics. 271s 271s Setting: wizard_prompt_mode set to 3. 271s Detected 2 CPU cores. Enabled multithreaded rendering. 271s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 271s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 271s PyMOL>wizard annotation 271s PyMOL>set wizard_prompt_mode,3 271s PyMOL>load_annotated_sdf demo.sdf 271s HBA ['[1, 25, 26, 34]\n'] 271s HBD ['[20]\n'] 271s ACD_NUMBER ['MFCD02681585\n'] 271s SCORE ['-222.044\n'] 271s MOLID ['MFCD02681585\n'] 271s HBA ['[1, 21]\n'] 271s HBD ['[]\n'] 271s ACD_NUMBER ['MFCD01567969\n'] 271s SCORE ['-219.984\n'] 271s MOLID ['MFCD01567969\n'] 271s HBA ['[1, 24]\n'] 271s HBD ['[10, 22]\n'] 271s ACD_NUMBER ['MFCD00023789\n'] 271s SCORE ['-219.911\n'] 271s MOLID ['MFCD00023789\n'] 271s HBA ['[1, 11]\n'] 271s HBD ['[3]\n'] 271s ACD_NUMBER ['MFCD02579443\n'] 271s SCORE ['-219.769\n'] 271s MOLID ['MFCD02579443\n'] 271s HBA ['[1, 11]\n'] 271s HBD ['[9]\n'] 271s ACD_NUMBER ['MFCD02579410\n'] 271s SCORE ['-214.809\n'] 271s MOLID ['MFCD02579410\n'] 271s HBA ['[1, 20, 22, 27, 32]\n'] 271s HBD ['[10, 20]\n'] 271s ACD_NUMBER ['MFCD02579135\n'] 271s SCORE ['-213.630\n'] 271s MOLID ['MFCD02579135\n'] 271s HBA ['[1, 11, 14, 21]\n'] 271s HBD ['[]\n'] 271s ACD_NUMBER ['MFCD02681468\n'] 271s SCORE ['-213.462\n'] 271s MOLID ['MFCD02681468\n'] 271s HBA ['[1, 13, 14, 29]\n'] 271s HBD ['[]\n'] 271s ACD_NUMBER ['MFCD00141070\n'] 271s SCORE ['-213.240\n'] 271s MOLID ['MFCD00141070\n'] 271s HBA ['[1, 8]\n'] 271s HBD ['[]\n'] 271s ACD_NUMBER ['MFCD02983625\n'] 271s SCORE ['-211.422\n'] 271s MOLID ['MFCD02983625\n'] 271s HBA ['[1, 11]\n'] 271s HBD ['[3, 12]\n'] 271s ACD_NUMBER ['MFCD00115818\n'] 271s SCORE ['-210.482\n'] 271s MOLID ['MFCD00115818\n'] 271s autopkgtest [22:30:53]: test command5: -----------------------] 272s autopkgtest [22:30:54]: test command5: - - - - - - - - - - results - - - - - - - - - - 272s command5 PASS (superficial) 272s autopkgtest [22:30:54]: @@@@@@@@@@@@@@@@@@@@ summary 272s command1 PASS (superficial) 272s command2 PASS (superficial) 272s command3 PASS (superficial) 272s command4 PASS (superficial) 272s command5 PASS (superficial) 276s nova [W] Skipping flock for amd64 276s Creating nova instance adt-plucky-amd64-pymol-20241114-222622-juju-7f2275-prod-proposed-migration-environment-15-135d97cc-5b4f-44cd-b5ea-7fd1f8bd0cc2 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...