0s autopkgtest [20:39:17]: starting date and time: 2025-02-22 20:39:17+0000 0s autopkgtest [20:39:17]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [20:39:17]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k89eh3y_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:sphinx --apt-upgrade pymatgen --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/8.1.3-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@lcy02-4.secgroup --name adt-plucky-amd64-pymatgen-20250222-203917-juju-7f2275-prod-proposed-migration-environment-20-44f8f2c0-435d-449e-91d5-6addc198027d --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 41s autopkgtest [20:39:58]: testbed dpkg architecture: amd64 41s autopkgtest [20:39:58]: testbed apt version: 2.9.30ubuntu1 41s autopkgtest [20:39:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 41s autopkgtest [20:39:58]: testbed release detected to be: None 41s autopkgtest [20:39:58]: updating testbed package index (apt update) 41s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 41s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 41s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 41s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 41s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 41s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.1 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [496 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [113 kB] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [83.1 kB] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [215 kB] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [436 kB] 41s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [20.9 kB] 41s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8844 B] 41s Fetched 1582 kB in 0s (8623 kB/s) 42s Reading package lists... 43s Reading package lists... 43s Building dependency tree... 43s Reading state information... 44s Calculating upgrade... 44s Calculating upgrade... 44s The following packages will be upgraded: 44s apport apport-core-dump-handler curl dracut-install kmod libarchive13t64 44s libcurl3t64-gnutls libcurl4t64 libgmp10 libkmod2 libpcre2-8-0 python3-apport 44s python3-problem-report sudo 44s 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 44s Need to get 3561 kB of archives. 44s After this operation, 371 kB of additional disk space will be used. 44s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-problem-report all 2.31.0+git20250220-0ubuntu2 [26.1 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apport all 2.31.0+git20250220-0ubuntu2 [93.5 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 apport-core-dump-handler all 2.31.0+git20250220-0ubuntu2 [18.9 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 apport all 2.31.0+git20250220-0ubuntu2 [83.1 kB] 44s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3ubuntu1 [256 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-8-0 amd64 10.45-1 [287 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 kmod amd64 33+20240816-2ubuntu1 [109 kB] 44s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libkmod2 amd64 33+20240816-2ubuntu1 [56.6 kB] 44s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 sudo amd64 1.9.16p2-1ubuntu1 [1011 kB] 44s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-2ubuntu1 [251 kB] 44s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-2ubuntu1 [437 kB] 44s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 dracut-install amd64 106-2ubuntu2 [36.8 kB] 44s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive13t64 amd64 3.7.7-0ubuntu2 [462 kB] 44s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-2ubuntu1 [432 kB] 45s Fetched 3561 kB in 0s (27.5 MB/s) 45s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 45s Preparing to unpack .../python3-problem-report_2.31.0+git20250220-0ubuntu2_all.deb ... 45s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 45s for fn in glob1(directory, "%s.*" % fname): 45s Unpacking python3-problem-report (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 45s Preparing to unpack .../python3-apport_2.31.0+git20250220-0ubuntu2_all.deb ... 45s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 45s for fn in glob1(directory, "%s.*" % fname): 45s Unpacking python3-apport (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 45s Preparing to unpack .../apport-core-dump-handler_2.31.0+git20250220-0ubuntu2_all.deb ... 45s Unpacking apport-core-dump-handler (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 45s Preparing to unpack .../apport_2.31.0+git20250220-0ubuntu2_all.deb ... 45s Unpacking apport (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 45s Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 45s Unpacking libgmp10:amd64 (2:6.3.0+dfsg-3ubuntu1) over (2:6.3.0+dfsg-2ubuntu7) ... 45s Setting up libgmp10:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 45s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 45s Preparing to unpack .../libpcre2-8-0_10.45-1_amd64.deb ... 45s Unpacking libpcre2-8-0:amd64 (10.45-1) over (10.42-4ubuntu3) ... 45s Setting up libpcre2-8-0:amd64 (10.45-1) ... 45s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 45s Preparing to unpack .../0-kmod_33+20240816-2ubuntu1_amd64.deb ... 45s Unpacking kmod (33+20240816-2ubuntu1) over (31+20240202-2ubuntu8) ... 45s Preparing to unpack .../1-libkmod2_33+20240816-2ubuntu1_amd64.deb ... 45s Unpacking libkmod2:amd64 (33+20240816-2ubuntu1) over (31+20240202-2ubuntu8) ... 45s Preparing to unpack .../2-sudo_1.9.16p2-1ubuntu1_amd64.deb ... 45s Unpacking sudo (1.9.16p2-1ubuntu1) over (1.9.15p5-3ubuntu5) ... 46s Preparing to unpack .../3-curl_8.12.1-2ubuntu1_amd64.deb ... 46s Unpacking curl (8.12.1-2ubuntu1) over (8.12.0+git20250209.89ed161+ds-1ubuntu1) ... 46s Preparing to unpack .../4-libcurl4t64_8.12.1-2ubuntu1_amd64.deb ... 46s Unpacking libcurl4t64:amd64 (8.12.1-2ubuntu1) over (8.12.0+git20250209.89ed161+ds-1ubuntu1) ... 46s Preparing to unpack .../5-dracut-install_106-2ubuntu2_amd64.deb ... 46s Unpacking dracut-install (106-2ubuntu2) over (106-2ubuntu1) ... 46s Preparing to unpack .../6-libarchive13t64_3.7.7-0ubuntu2_amd64.deb ... 46s Unpacking libarchive13t64:amd64 (3.7.7-0ubuntu2) over (3.7.7-0ubuntu1) ... 46s Preparing to unpack .../7-libcurl3t64-gnutls_8.12.1-2ubuntu1_amd64.deb ... 46s Unpacking libcurl3t64-gnutls:amd64 (8.12.1-2ubuntu1) over (8.12.0+git20250209.89ed161+ds-1ubuntu1) ... 46s Setting up libcurl4t64:amd64 (8.12.1-2ubuntu1) ... 46s Setting up python3-problem-report (2.31.0+git20250220-0ubuntu2) ... 46s Setting up libcurl3t64-gnutls:amd64 (8.12.1-2ubuntu1) ... 46s Setting up python3-apport (2.31.0+git20250220-0ubuntu2) ... 46s Setting up sudo (1.9.16p2-1ubuntu1) ... 46s Installing new version of config file /etc/sudo.conf ... 46s Setting up curl (8.12.1-2ubuntu1) ... 46s Setting up libarchive13t64:amd64 (3.7.7-0ubuntu2) ... 46s Setting up libkmod2:amd64 (33+20240816-2ubuntu1) ... 46s Setting up kmod (33+20240816-2ubuntu1) ... 46s Setting up dracut-install (106-2ubuntu2) ... 46s Setting up apport-core-dump-handler (2.31.0+git20250220-0ubuntu2) ... 47s Setting up apport (2.31.0+git20250220-0ubuntu2) ... 48s apport-autoreport.service is a disabled or a static unit not running, not starting it. 48s Processing triggers for initramfs-tools (0.145ubuntu2) ... 48s update-initramfs: Generating /boot/initrd.img-6.12.0-15-generic 48s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 59s Processing triggers for libc-bin (2.40-4ubuntu1) ... 59s Processing triggers for man-db (2.13.0-1) ... 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Solving dependencies... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [20:40:19]: upgrading testbed (apt dist-upgrade and autopurge) 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 63s Starting 2 pkgProblemResolver with broken count: 0 63s Done 63s Entering ResolveByKeep 63s 63s Calculating upgrade... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Starting pkgProblemResolver with broken count: 0 64s Starting 2 pkgProblemResolver with broken count: 0 64s Done 65s Solving dependencies... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s autopkgtest [20:40:22]: rebooting testbed after setup commands that affected boot 69s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 80s autopkgtest [20:40:37]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 16:02:16 UTC 2025 81s autopkgtest [20:40:38]: @@@@@@@@@@@@@@@@@@@@ apt-source pymatgen 82s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymatgen 2024.10.29+dfsg1-5 (dsc) [3185 B] 82s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymatgen 2024.10.29+dfsg1-5 (tar) [9757 kB] 82s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymatgen 2024.10.29+dfsg1-5 (diff) [18.7 kB] 82s gpgv: Signature made Fri Feb 14 00:34:02 2025 UTC 82s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 82s gpgv: Can't check signature: No public key 82s dpkg-source: warning: cannot verify inline signature for ./pymatgen_2024.10.29+dfsg1-5.dsc: no acceptable signature found 83s dpkg-source: warning: diff 'src/debian/patches/32bit_indexing_PR4194.patch' patches file src/src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py more than once 83s autopkgtest [20:40:40]: testing package pymatgen version 2024.10.29+dfsg1-5 83s autopkgtest [20:40:40]: build not needed 84s autopkgtest [20:40:41]: test test-pymatgen: preparing testbed 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Starting pkgProblemResolver with broken count: 0 84s Starting 2 pkgProblemResolver with broken count: 0 84s Done 85s The following NEW packages will be installed: 85s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 85s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 85s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 85s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 85s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 85s fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 85s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 85s libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3 85s libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0 85s libdouble-conversion3 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 85s libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 85s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 85s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 85s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 85s libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 85s libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 85s libinchi1.07 libinput-bin libinput10 libisl23 libitm1 libjbig0 85s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 85s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26 85s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 liblsan0 liblzf1 85s libmaeparser1 libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnetcdf19t64 85s libnetcdf22 libogg0 libopenbabel7 libopengl0 libopenjp2-7 libopenmpi40 85s libpciaccess0 libpcre2-16-0 libpixman-1-0 libpmix2t64 libproj25 85s libpsm-infinipath1 libpsm2-2 libpython3-all-dev libpython3-dev 85s libpython3.12-dev libpython3.13-dev libqhull-r8.0 libqt5core5t64 85s libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 libqt5widgets5t64 85s libquadmath0 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 libstdc++-14-dev 85s libsymspg2 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 85s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libtool libtsan2 libubsan1 85s libucx0 libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common libwacom9 85s libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 85s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 85s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 85s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 85s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxft2 85s libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 libxss1 85s libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 85s openmpi-bin openmpi-common packmol po-debconf proj-data 85s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 85s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 85s python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson 85s python3-build python3-cftime python3-contourpy python3-cycler 85s python3-dateutil python3-decorator python3-defusedxml python3-dev 85s python3-dnspython python3-docutils python3-email-validator 85s python3-fastjsonschema python3-fonttools python3-frozendict python3-fs 85s python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig 85s python3-installer python3-joblib python3-jupyter-core python3-kiwisolver 85s python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty 85s python3-mpi4py python3-mpmath python3-nbformat python3-netcdf4 85s python3-networkx python3-numpy python3-openbabel python3-packaging 85s python3-palettable python3-pandas python3-pandas-lib python3-phonopy 85s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 85s python3-pluggy python3-pybtex python3-pydantic python3-pydantic-core 85s python3-pymatgen python3-pyproject-hooks python3-pytest python3-pytz 85s python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy 85s python3-six python3-snowballstemmer python3-soupsieve python3-spglib 85s python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery 85s python3-sympy python3-tabulate python3-tenacity python3-tk python3-toml 85s python3-tqdm python3-traitlets python3-tz python3-ufolib2 85s python3-uncertainties python3-unicodedata2 python3-vtk9 python3-wheel 85s python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-dev 85s python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 85s unicode-data x11-common xml-core zlib1g-dev 85s 0 upgraded, 302 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 557 MB of archives. 85s After this operation, 2191 MB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB] 85s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 85s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB] 85s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-5 [263 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 85s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 85s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 85s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB] 85s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 85s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 85s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 85s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 85s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 85s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 85s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 85s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 85s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 85s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 85s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 85s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 85s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 85s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 85s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 85s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 85s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 85s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 85s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250213-1ubuntu1 [47.0 kB] 85s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB] 85s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250213-1ubuntu1 [28.5 kB] 85s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250213-1ubuntu1 [3059 kB] 85s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250213-1ubuntu1 [1356 kB] 85s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250213-1ubuntu1 [2757 kB] 85s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250213-1ubuntu1 [1206 kB] 85s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250213-1ubuntu1 [1678 kB] 85s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250213-1ubuntu1 [152 kB] 85s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 85s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 85s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 85s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 85s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 85s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 85s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 86s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 86s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 86s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 86s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 86s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu1 [3370 kB] 86s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 86s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-3build1 [168 kB] 86s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 86s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 86s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 86s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 86s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB] 86s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 86s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB] 86s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 86s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 86s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB] 86s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250108 [117 kB] 86s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 86s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 86s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 86s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 86s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 86s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 86s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 86s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 86s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 86s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 86s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 86s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 86s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 86s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 86s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.1ubuntu1 [260 kB] 86s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 86s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 86s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 86s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 86s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 86s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 86s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 86s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 86s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 86s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 86s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.3.4-3ubuntu1 [42.9 kB] 86s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 86s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 86s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 86s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 86s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 86s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 86s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 86s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.3.4-3ubuntu1 [11.9 MB] 86s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.3.4-3ubuntu1 [33.3 kB] 86s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 86s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.3.4-3ubuntu1 [136 kB] 86s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 86s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 86s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 86s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 86s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 55.0-1ubuntu1 [71.5 kB] 86s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 86s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB] 86s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 86s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.3.4-3ubuntu1 [34.7 kB] 86s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 86s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 86s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 86s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.3.4-3ubuntu1 [146 kB] 86s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 86s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 86s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 86s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 86s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 86s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 86s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 86s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 86s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 86s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 86s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 86s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 86s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1.07 amd64 1.07.2+dfsg-1 [702 kB] 86s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.14.0-1 [103 kB] 86s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 86s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB] 86s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 86s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.27.1-1 [155 kB] 86s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 86s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 86s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 86s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 86s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 86s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 86s Get:136 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 86s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 86s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 86s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 86s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 86s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 86s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 86s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 86s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 86s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 86s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB] 86s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 86s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 86s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB] 86s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 86s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 86s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 86s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 86s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.6-3 [714 kB] 86s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 55.0-1ubuntu1 [29.7 kB] 86s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 55.0-1ubuntu1 [42.7 kB] 86s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 86s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 86s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 86s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 86s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 86s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 86s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 86s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 86s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 86s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 86s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.2-1 [5501 kB] 86s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.13.1-1~exp2 [10.5 kB] 86s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.9-1 [5702 kB] 86s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.13.1-1~exp2 [922 B] 86s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 86s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 86s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 86s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 86s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 86s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 86s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 86s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 86s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 86s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 86s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 86s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 86s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 86s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 86s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 86s Get:186 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 86s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 86s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 87s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 87s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.5.0-2 [250 kB] 87s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2022.0.0-1 [55.6 kB] 87s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2022.0.0-1 [15.7 kB] 87s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2022.0.0-1 [102 kB] 87s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-5 [70.2 kB] 87s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-5 [115 kB] 87s Get:196 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 87s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-1.1ubuntu3 [25.3 MB] 87s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-1.1ubuntu3 [182 kB] 87s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 87s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 87s Get:201 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 87s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 87s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 87s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 packmol amd64 1:20.15.3-1 [135 kB] 87s Get:205 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 87s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 87s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 87s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB] 87s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 87s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 87s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20250108 [1726 B] 87s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymatgen-test-files all 2024.10.29-1 [213 MB] 88s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 88s Get:214 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 88s Get:215 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 88s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pymatgen-doc all 2024.10.29+dfsg1-5 [1129 kB] 88s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B] 88s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.2-1 [508 kB] 88s Get:219 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.13.1-1~exp2 [26.7 kB] 88s Get:220 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.9-1 [505 kB] 88s Get:221 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.13.1-1~exp2 [918 B] 88s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 88s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [5319 kB] 88s Get:224 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 88s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu1 [22.3 MB] 88s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.5.0-2 [31.7 kB] 88s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 88s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 88s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5 [589 kB] 88s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB] 89s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-1 [107 kB] 89s Get:232 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B] 89s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5 [9936 B] 89s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1 [271 kB] 89s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 89s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 89s Get:237 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB] 89s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B] 89s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 89s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-6 [90.7 kB] 89s Get:241 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB] 89s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1 [27.4 kB] 89s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 89s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 89s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 89s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 89s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 89s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2 [1755 kB] 89s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3 [70.4 kB] 89s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu2 [4697 kB] 89s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ase all 3.23.0-1ubuntu1 [1754 kB] 89s Get:252 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB] 89s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.13.3-1 [136 kB] 89s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.10.1-5 [42.8 kB] 89s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1build2 [346 kB] 89s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB] 89s Get:257 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 89s Get:258 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 5.0-1 [10.3 kB] 89s Get:259 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 89s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 89s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 89s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-frozendict all 2.4.6-1 [13.2 kB] 89s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.12.1-1 [1677 kB] 89s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.12.1-1 [7970 B] 89s Get:265 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 89s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 89s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-2 [205 kB] 89s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 89s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 89s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 89s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [8248 kB] 89s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8 [3112 kB] 89s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.27.2-1 [1860 kB] 89s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB] 89s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB] 89s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1 [218 kB] 89s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 89s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2025.1.9-1 [40.1 kB] 89s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 89s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1build3 [942 kB] 89s Get:281 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 89s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB] 89s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 89s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-phonopy amd64 2.35.0-1 [325 kB] 89s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 89s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 89s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 89s Get:288 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB] 89s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 89s Get:290 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 89s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB] 89s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymatgen amd64 2024.10.29+dfsg1-5 [2670 kB] 89s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB] 89s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 89s Get:295 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 sphinx-common all 8.1.3-5 [663 kB] 89s Get:296 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 89s Get:297 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-sphinx all 8.1.3-5 [474 kB] 89s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 89s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 89s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 89s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpi4py amd64 4.0.1-6ubuntu1 [1098 kB] 89s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-1.1ubuntu3 [7840 kB] 90s Fetched 557 MB in 4s (139 MB/s) 90s Selecting previously unselected package python3.12-minimal. 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 90s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_amd64.deb ... 90s Unpacking python3.12-minimal (3.12.9-1) ... 90s Selecting previously unselected package fonts-lato. 90s Preparing to unpack .../001-fonts-lato_2.015-1_all.deb ... 90s Unpacking fonts-lato (2.015-1) ... 90s Selecting previously unselected package sgml-base. 90s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 90s Unpacking sgml-base (1.31) ... 90s Selecting previously unselected package python3.12. 90s Preparing to unpack .../003-python3.12_3.12.9-1_amd64.deb ... 90s Unpacking python3.12 (3.12.9-1) ... 90s Selecting previously unselected package m4. 90s Preparing to unpack .../004-m4_1.4.19-5_amd64.deb ... 90s Unpacking m4 (1.4.19-5) ... 90s Selecting previously unselected package autoconf. 90s Preparing to unpack .../005-autoconf_2.72-3ubuntu1_all.deb ... 90s Unpacking autoconf (2.72-3ubuntu1) ... 90s Selecting previously unselected package autotools-dev. 90s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 90s Unpacking autotools-dev (20220109.1) ... 90s Selecting previously unselected package automake. 90s Preparing to unpack .../007-automake_1%3a1.17-3ubuntu1_all.deb ... 90s Unpacking automake (1:1.17-3ubuntu1) ... 90s Selecting previously unselected package autopoint. 90s Preparing to unpack .../008-autopoint_0.23.1-1_all.deb ... 90s Unpacking autopoint (0.23.1-1) ... 90s Selecting previously unselected package libtcl8.6:amd64. 90s Preparing to unpack .../009-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 90s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 91s Selecting previously unselected package fonts-dejavu-mono. 91s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 91s Unpacking fonts-dejavu-mono (2.37-8) ... 91s Selecting previously unselected package fonts-dejavu-core. 91s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 91s Unpacking fonts-dejavu-core (2.37-8) ... 91s Selecting previously unselected package fontconfig-config. 91s Preparing to unpack .../012-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 91s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 91s Selecting previously unselected package libfontconfig1:amd64. 91s Preparing to unpack .../013-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 91s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 91s Selecting previously unselected package libxrender1:amd64. 91s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 91s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 91s Selecting previously unselected package libxft2:amd64. 91s Preparing to unpack .../015-libxft2_2.3.6-1build1_amd64.deb ... 91s Unpacking libxft2:amd64 (2.3.6-1build1) ... 91s Selecting previously unselected package x11-common. 91s Preparing to unpack .../016-x11-common_1%3a7.7+23ubuntu3_all.deb ... 91s Unpacking x11-common (1:7.7+23ubuntu3) ... 91s Selecting previously unselected package libxss1:amd64. 91s Preparing to unpack .../017-libxss1_1%3a1.2.3-1build3_amd64.deb ... 91s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 91s Selecting previously unselected package libtk8.6:amd64. 91s Preparing to unpack .../018-libtk8.6_8.6.16-1_amd64.deb ... 91s Unpacking libtk8.6:amd64 (8.6.16-1) ... 91s Selecting previously unselected package tk8.6-blt2.5. 91s Preparing to unpack .../019-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 91s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 91s Selecting previously unselected package blt. 91s Preparing to unpack .../020-blt_2.5.3+dfsg-7build1_amd64.deb ... 91s Unpacking blt (2.5.3+dfsg-7build1) ... 91s Selecting previously unselected package libisl23:amd64. 91s Preparing to unpack .../021-libisl23_0.27-1_amd64.deb ... 91s Unpacking libisl23:amd64 (0.27-1) ... 91s Selecting previously unselected package libmpc3:amd64. 91s Preparing to unpack .../022-libmpc3_1.3.1-1build2_amd64.deb ... 91s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 91s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 91s Preparing to unpack .../023-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 91s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 91s Selecting previously unselected package cpp-14. 91s Preparing to unpack .../024-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 91s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 91s Selecting previously unselected package cpp-x86-64-linux-gnu. 92s Preparing to unpack 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package build-essential. 93s Preparing to unpack .../046-build-essential_12.10ubuntu1_amd64.deb ... 93s Unpacking build-essential (12.10ubuntu1) ... 93s Selecting previously unselected package cython3. 93s Preparing to unpack .../047-cython3_3.0.11+dfsg-2ubuntu1_amd64.deb ... 93s Unpacking cython3 (3.0.11+dfsg-2ubuntu1) ... 93s Selecting previously unselected package libdebhelper-perl. 93s Preparing to unpack .../048-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 93s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 93s Selecting previously unselected package libtool. 93s Preparing to unpack .../049-libtool_2.5.4-3build1_all.deb ... 93s Unpacking libtool (2.5.4-3build1) ... 93s Selecting previously unselected package dh-autoreconf. 93s Preparing to unpack .../050-dh-autoreconf_20_all.deb ... 93s Unpacking dh-autoreconf (20) ... 93s Selecting previously unselected package libarchive-zip-perl. 93s Preparing to unpack .../051-libarchive-zip-perl_1.68-1_all.deb ... 93s Unpacking 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package libdrm-radeon1:amd64. 96s Preparing to unpack .../084-libdrm-radeon1_2.4.123-1_amd64.deb ... 96s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 96s Selecting previously unselected package libwayland-server0:amd64. 96s Preparing to unpack .../085-libwayland-server0_1.23.1-3_amd64.deb ... 96s Unpacking libwayland-server0:amd64 (1.23.1-3) ... 96s Selecting previously unselected package libglapi-mesa:amd64. 96s Preparing to unpack .../086-libglapi-mesa_24.3.4-3ubuntu1_amd64.deb ... 96s Unpacking libglapi-mesa:amd64 (24.3.4-3ubuntu1) ... 96s Selecting previously unselected package libx11-xcb1:amd64. 96s Preparing to unpack .../087-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 96s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 96s Selecting previously unselected package libxcb-dri3-0:amd64. 96s Preparing to unpack .../088-libxcb-dri3-0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxcb-present0:amd64. 96s Preparing to unpack .../089-libxcb-present0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxcb-randr0:amd64. 96s Preparing to unpack .../090-libxcb-randr0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxcb-sync1:amd64. 96s Preparing to unpack .../091-libxcb-sync1_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxcb-xfixes0:amd64. 96s Preparing to unpack .../092-libxcb-xfixes0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxshmfence1:amd64. 96s Preparing to unpack .../093-libxshmfence1_1.3-1build5_amd64.deb ... 96s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 96s Selecting previously unselected package mesa-libgallium:amd64. 96s Preparing to unpack .../094-mesa-libgallium_24.3.4-3ubuntu1_amd64.deb ... 96s 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package libglx-mesa0:amd64. 97s Preparing to unpack .../110-libglx-mesa0_24.3.4-3ubuntu1_amd64.deb ... 97s Unpacking libglx-mesa0:amd64 (24.3.4-3ubuntu1) ... 97s Selecting previously unselected package libglx0:amd64. 97s Preparing to unpack .../111-libglx0_1.7.0-1build1_amd64.deb ... 97s Unpacking libglx0:amd64 (1.7.0-1build1) ... 97s Selecting previously unselected package libgl1:amd64. 97s Preparing to unpack .../112-libgl1_1.7.0-1build1_amd64.deb ... 97s Unpacking libgl1:amd64 (1.7.0-1build1) ... 97s Selecting previously unselected package libgl2ps1.4. 97s Preparing to unpack .../113-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 97s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 97s Selecting previously unselected package libglew2.2:amd64. 97s Preparing to unpack .../114-libglew2.2_2.2.0-4build1_amd64.deb ... 97s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 97s Selecting previously unselected package libgraphite2-3:amd64. 97s Preparing to unpack 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python3-pil.imagetk:amd64 (11.1.0-5) ... 174s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 174s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 174s Setting up g++-14 (14.2.0-17ubuntu3) ... 174s Setting up libopenmpi40:amd64 (5.0.7-1) ... 174s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 174s Setting up libtool (2.5.4-3build1) ... 174s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 174s Setting up gcc (4:14.2.0-1ubuntu1) ... 174s Setting up dh-autoreconf (20) ... 174s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-1.1ubuntu3) ... 174s Setting up g++ (4:14.2.0-1ubuntu1) ... 174s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 174s Setting up build-essential (12.10ubuntu1) ... 174s Setting up openmpi-bin (5.0.7-1) ... 174s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 174s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 174s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 174s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-1.1ubuntu3) ... 174s Setting up mpi-default-bin (1.18) ... 174s Setting up debhelper (13.24.1ubuntu2) ... 174s Setting up python3-mpi4py (4.0.1-6ubuntu1) ... 174s Setting up python3-vtk9 (9.3.0+dfsg1-1.1ubuntu3) ... 175s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 175s patn = re.compile (" \S") 175s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 175s patn = re.compile (" \S") 175s Setting up python3-fonttools (4.55.3-2) ... 176s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 176s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 179s Setting up python3-ase (3.23.0-1ubuntu1) ... 182s Setting up python3-phonopy (2.35.0-1) ... 182s Setting up python3-pymatgen (2024.10.29+dfsg1-5) ... 185s Processing triggers for libc-bin (2.40-4ubuntu1) ... 185s Processing triggers for systemd (257.2-3ubuntu1) ... 185s Processing triggers for man-db (2.13.0-1) ... 187s Processing triggers for udev (257.2-3ubuntu1) ... 187s Processing triggers for install-info (7.1.1-1) ... 187s Processing triggers for sgml-base (1.31) ... 187s Setting up docutils-common (0.21.2+dfsg-2) ... 187s Processing triggers for sgml-base (1.31) ... 187s Setting up python3-docutils (0.21.2+dfsg-2) ... 188s Setting up python3-sphinx (8.1.3-5) ... 189s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 189s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 190s autopkgtest [20:42:27]: test test-pymatgen: [----------------------- 190s skipping tests with SKIP_TEST_LIST=TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_rotor_search_rrs BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_CifWriter test_read_write test_init test_get_site_symmetries test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit test_rotor_search_wrs 211s ============================= test session starts ============================== 211s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 211s rootdir: /tmp/autopkgtest.zx9QEQ/build.V9t/src 211s configfile: pyproject.toml 211s plugins: typeguard-4.4.1 211s collected 2935 items / 282 deselected / 8 skipped / 2653 selected 211s 212s tests/alchemy/test_filters.py ....... [ 0%] 213s tests/alchemy/test_materials.py ......... [ 0%] 213s tests/alchemy/test_transmuters.py . [ 0%] 215s tests/analysis/chemenv/connectivity/test_connected_components.py ..... [ 0%] 215s tests/analysis/chemenv/connectivity/test_environment_nodes.py ... [ 0%] 215s tests/analysis/chemenv/connectivity/test_structure_connectivity.py . [ 0%] 215s tests/analysis/chemenv/coordination_environments/test_chemenv_strategies.py . [ 1%] 215s . [ 1%] 215s tests/analysis/chemenv/coordination_environments/test_coordination_geometries.py . [ 1%] 215s .. [ 1%] 216s tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py . [ 1%] 221s ..ss [ 1%] 225s tests/analysis/chemenv/coordination_environments/test_structure_environments.py . [ 1%] 225s .. [ 1%] 225s tests/analysis/chemenv/coordination_environments/test_voronoi.py .. [ 1%] 226s tests/analysis/chemenv/coordination_environments/test_weights.py ....... [ 1%] 226s [ 1%] 226s tests/analysis/chemenv/utils/test_chemenv_config.py . [ 1%] 226s tests/analysis/chemenv/utils/test_coordination_geometry_utils.py ....... [ 2%] 226s ..... [ 2%] 226s tests/analysis/chemenv/utils/test_func_utils.py ... [ 2%] 226s tests/analysis/chemenv/utils/test_graph_utils.py .... [ 2%] 226s tests/analysis/chemenv/utils/test_math_utils.py ......... [ 2%] 226s tests/analysis/diffraction/test_neutron.py .. [ 2%] 228s tests/analysis/diffraction/test_tem.py .................... [ 3%] 228s tests/analysis/diffraction/test_xrd.py .. [ 3%] 274s tests/analysis/elasticity/test_elastic.py ......................... [ 4%] 274s tests/analysis/elasticity/test_strain.py ........ [ 5%] 274s tests/analysis/elasticity/test_stress.py . [ 5%] 281s tests/analysis/ferroelectricity/test_polarization.py ............ [ 5%] 284s tests/analysis/interfaces/test_coherent_interface.py ... [ 5%] 291s tests/analysis/interfaces/test_substrate_analyzer.py .. [ 5%] 291s tests/analysis/interfaces/test_zsl.py .. [ 5%] 301s tests/analysis/magnetism/test_analyzer.py .........s. [ 6%] 301s tests/analysis/magnetism/test_heisenberg.py ....... [ 6%] 302s tests/analysis/magnetism/test_jahnteller.py ... [ 6%] 303s tests/analysis/solar/test_slme.py . [ 6%] 304s tests/analysis/structure_prediction/test_dopant_predictor.py .. [ 6%] 304s tests/analysis/structure_prediction/test_substitution_probability.py ... [ 6%] 304s [ 6%] 304s tests/analysis/structure_prediction/test_substitutor.py .. [ 6%] 305s tests/analysis/structure_prediction/test_volume_predictor.py ... [ 7%] 349s tests/analysis/test_adsorption.py ...... [ 7%] 349s tests/analysis/test_bond_dissociation.py sss [ 7%] 349s tests/analysis/test_bond_valence.py .... [ 7%] 352s tests/analysis/test_chempot_diagram.py ........... [ 7%] 353s tests/analysis/test_cost.py .... [ 8%] 358s tests/analysis/test_dimensionality.py .......... [ 8%] 358s tests/analysis/test_disorder.py . [ 8%] 358s tests/analysis/test_energy_models.py ...... [ 8%] 358s tests/analysis/test_eos.py ...... [ 8%] 358s tests/analysis/test_ewald.py ... [ 9%] 371s tests/analysis/test_fragmenter.py ssss.....s [ 9%] 386s tests/analysis/test_graphs.py ..s..................s............ [ 10%] 386s tests/analysis/test_hhi.py . [ 10%] 386s tests/analysis/test_interface_reactions.py .................. [ 11%] 402s tests/analysis/test_local_env.py .............ss.....................s.. [ 12%] 402s ... [ 13%] 402s tests/analysis/test_molecule_matcher.py sssssss......................... [ 14%] 404s .......................... [ 15%] 404s tests/analysis/test_molecule_structure_comparator.py ...s. [ 15%] 404s tests/analysis/test_nmr.py ...... [ 15%] 406s tests/analysis/test_phase_diagram.py ................................... [ 16%] 422s .................................................... [ 18%] 422s tests/analysis/test_piezo.py ... [ 18%] 423s tests/analysis/test_piezo_sensitivity.py .............. [ 19%] 426s tests/analysis/test_pourbaix_diagram.py .................. [ 20%] 437s tests/analysis/test_prototypes.py . [ 20%] 437s tests/analysis/test_quasi_harmonic_debye_approx.py ............. [ 20%] 440s tests/analysis/test_quasirrho.py ...... [ 20%] 440s tests/analysis/test_reaction_calculator.py ..................... [ 21%] 457s tests/analysis/test_structure_analyzer.py ......... [ 22%] 458s tests/analysis/test_structure_matcher.py ............................. [ 23%] 466s tests/analysis/test_surface_analysis.py ....sss....s.s..... [ 23%] 494s tests/analysis/test_transition_state.py ... [ 24%] 496s tests/analysis/test_wulff.py ..... [ 24%] 496s tests/analysis/test_xps.py . [ 24%] 506s tests/analysis/topological/test_spillage.py . [ 24%] 506s tests/analysis/xas/test_spectrum.py ........... [ 24%] 506s tests/apps/battery/test_analyzer.py .... [ 24%] 506s tests/apps/battery/test_conversion_battery.py ... [ 24%] 507s tests/apps/battery/test_insertion_battery.py ......... [ 25%] 507s tests/apps/battery/test_plotter.py .. [ 25%] 507s tests/apps/borg/test_hive.py ........ [ 25%] 507s tests/apps/borg/test_queen.py .. [ 25%] 509s tests/cli/test_pmg_analyze.py . [ 25%] 511s tests/cli/test_pmg_diff.py . [ 25%] 528s tests/cli/test_pmg_plot.py .... [ 25%] 537s tests/cli/test_pmg_structure.py . [ 26%] 537s tests/command_line/test_bader_caller.py ssss [ 26%] 537s tests/command_line/test_chargemol_caller.py .. [ 26%] 537s tests/command_line/test_critic2_caller.py ss.. [ 26%] 537s tests/command_line/test_enumlib_caller.py sss [ 26%] 537s tests/command_line/test_gulp_caller.py sssssssssssssssssssssssssss [ 27%] 537s tests/command_line/test_mcsqs_caller.py sssssss [ 27%] 537s tests/command_line/test_vampire_caller.py s [ 27%] 537s tests/core/test_bonds.py ....... [ 28%] 537s tests/core/test_composition.py ......................................... [ 29%] 537s ............ [ 30%] 550s tests/core/test_interface.py ...................... [ 30%] 550s tests/core/test_ion.py ............... [ 31%] 551s tests/core/test_lattice.py ................................ [ 32%] 551s tests/core/test_libxcfunc.py .. [ 32%] 551s tests/core/test_molecular_orbitals.py .... [ 32%] 551s tests/core/test_operations.py ................ [ 33%] 551s tests/core/test_periodic_table.py ...................................... [ 34%] 551s .................... [ 35%] 551s tests/core/test_settings.py .. [ 35%] 551s tests/core/test_sites.py .................... [ 36%] 551s tests/core/test_spectrum.py ..... [ 36%] 554s tests/core/test_structure.py .................s.......s................. [ 38%] 570s ..................ss....s.................ssss.......................... [ 41%] 570s ....................s.......s....... [ 42%] 660s tests/core/test_surface.py .......................s.... [ 43%] 666s tests/core/test_tensors.py ............................ [ 44%] 715s tests/core/test_trajectory.py ................. [ 45%] 715s tests/core/test_units.py ................. [ 45%] 715s tests/core/test_xcfunc.py ....s. [ 46%] 722s tests/electronic_structure/test_bandstructure.py ....................... [ 46%] 730s ......... [ 47%] 730s tests/electronic_structure/test_boltztrap.py ssssssssssssssss [ 47%] 761s tests/electronic_structure/test_cohp.py .............................. [ 48%] 761s tests/electronic_structure/test_core.py .......... [ 49%] 772s tests/electronic_structure/test_dos.py ......................... [ 50%] 827s tests/electronic_structure/test_plotter.py ...............ssssssssssssss [ 51%] 827s sssss..... [ 51%] 831s tests/entries/test_compatibility.py .................................... [ 53%] 832s ................................................... [ 55%] 832s tests/entries/test_computed_entries.py ................................. [ 56%] 832s .... [ 56%] 834s tests/entries/test_correction_calculator.py .... [ 56%] 849s tests/entries/test_entry_tools.py ....... [ 56%] 849s tests/entries/test_exp_entries.py ... [ 56%] 850s tests/entries/test_mixing_scheme.py ............................... [ 58%] 851s tests/ext/test_cod.py .. [ 58%] 870s tests/ext/test_optimade.py ..... [ 58%] 870s tests/io/abinit/test_abiobjects.py ......... [ 58%] 871s tests/io/abinit/test_inputs.py ........ [ 59%] 871s tests/io/abinit/test_netcdf.py ... [ 59%] 871s tests/io/abinit/test_pseudos.py ...... [ 59%] 871s tests/io/aims/sets/test_bs_generator.py ... [ 59%] 871s tests/io/aims/sets/test_gw_generator.py . [ 59%] 871s tests/io/aims/sets/test_input_set.py . [ 59%] 871s tests/io/aims/sets/test_md_generator.py . [ 59%] 871s tests/io/aims/sets/test_relax_generator.py ... [ 59%] 871s tests/io/aims/sets/test_static_generator.py .... [ 59%] 871s tests/io/aims/sets/test_static_restart_from_relax_generator.py ..... [ 60%] 871s tests/io/aims/test_inputs.py ...... [ 60%] 872s tests/io/aims/test_outputs.py ...... [ 60%] 872s tests/io/aims/test_parsers.py .......................................... [ 62%] 872s ...................................................... [ 64%] 872s tests/io/cp2k/test_inputs.py .............. [ 64%] 872s tests/io/cp2k/test_outputs.py ....... [ 64%] 872s tests/io/exciting/test_inputs.py .s.. [ 65%] 873s tests/io/feff/test_inputs.py .................. [ 65%] 873s tests/io/feff/test_outputs.py ...... [ 65%] 889s tests/io/lammps/test_data.py ............................. [ 67%] 889s tests/io/lammps/test_generators.py . [ 67%] 890s tests/io/lammps/test_inputs.py ..................... [ 67%] 890s tests/io/lammps/test_outputs.py .... [ 68%] 891s tests/io/lammps/test_utils.py ... [ 68%] 903s tests/io/lobster/test_inputs.py ................ [ 68%] 928s tests/io/lobster/test_lobsterenv.py ................. [ 69%] 950s tests/io/lobster/test_outputs.py ....................................... [ 70%] 952s ......... [ 71%] 952s tests/io/pwmat/test_inputs.py .......... [ 71%] 952s tests/io/qchem/test_inputs.py ................................... [ 72%] 979s tests/io/qchem/test_outputs.py .................s... [ 73%] 979s tests/io/qchem/test_utils.py .. [ 73%] 979s tests/io/test_adf.py .............. [ 74%] 980s tests/io/test_ase.py ....................... [ 75%] 980s tests/io/test_atat.py .... [ 75%] 982s tests/io/test_cif.py ........s.................................... [ 77%] 991s tests/io/test_common.py .. [ 77%] 992s tests/io/test_core.py ......... [ 77%] 992s tests/io/test_cssr.py .. [ 77%] 992s tests/io/test_fiesta.py .. [ 77%] 992s tests/io/test_gaussian.py ................. [ 78%] 992s tests/io/test_jarvis.py ss [ 78%] 993s tests/io/test_lmto.py ..... [ 78%] 993s tests/io/test_multiwfn.py ..... [ 78%] 994s tests/io/test_nwchem.py ............ [ 79%] 994s tests/io/test_optimade.py . [ 79%] 1008s tests/io/test_packmol.py .......s. [ 79%] 1039s tests/io/test_phonopy.py ........... [ 79%] 1039s tests/io/test_prismatic.py . [ 79%] 1039s tests/io/test_pwscf.py ............. [ 80%] 1039s tests/io/test_res.py ............... [ 81%] 1039s tests/io/test_template_input.py . [ 81%] 1039s tests/io/test_wannier90.py .... [ 81%] 1039s tests/io/test_xcrysden.py .... [ 81%] 1039s tests/io/test_xr.py .. [ 81%] 1040s tests/io/test_xyz.py ........ [ 81%] 1040s tests/io/vasp/test_help.py ... [ 81%] 1040s tests/io/vasp/test_inputs.py ........................................... [ 83%] 1043s .........................s............. [ 84%] 1059s tests/io/vasp/test_optics.py ... [ 85%] 1119s tests/io/vasp/test_outputs.py .......................................... [ 86%] 1173s ................................................................. [ 89%] 1173s tests/io/xtb/test_inputs.py .. [ 89%] 1173s tests/optimization/test_linear_assignment.py .... [ 89%] 1173s tests/optimization/test_neighbors.py . [ 89%] 1175s tests/phonon/test_bandstructure.py ........... [ 89%] 1175s tests/phonon/test_dos.py ................... [ 90%] 1400s tests/phonon/test_gruneisen.py .............. [ 90%] 1400s tests/phonon/test_ir_spectra.py . [ 91%] 1410s tests/phonon/test_plotter.py ........ [ 91%] 1410s tests/phonon/test_thermal_displacements.py .............. [ 91%] 1413s tests/symmetry/test_analyzer.py ................................. [ 93%] 1454s tests/symmetry/test_groups.py ........................ [ 94%] 1488s tests/symmetry/test_kpath_lm.py ... [ 94%] 1502s tests/symmetry/test_kpath_sc.py .. [ 94%] 1503s tests/symmetry/test_kpaths.py .s [ 94%] 1504s tests/symmetry/test_maggroups.py ...... [ 94%] 1504s tests/symmetry/test_settings.py .... [ 94%] 1505s tests/symmetry/test_site_symmetries.py . [ 94%] 1505s tests/test_pkg.py s [ 94%] 1505s tests/transformations/test_advanced_transformations.py .s..sssss..ssssss [ 95%] 1563s ss...ssssss....s [ 95%] 1563s tests/transformations/test_site_transformations.py ...........s...... [ 96%] 1564s tests/transformations/test_standard_transformations.py ............ssss. [ 97%] 1567s ........... [ 97%] 1567s tests/util/test_coord.py ...................... [ 98%] 1567s tests/util/test_graph_hashing.py .. [ 98%] 1567s tests/util/test_io.py . [ 98%] 1567s tests/util/test_misc.py ...... [ 98%] 1567s tests/util/test_num.py . [ 98%] 1568s tests/util/test_plotting.py .. [ 98%] 1568s tests/util/test_provenance.py ........ [ 99%] 1568s tests/util/test_string.py ........... [ 99%] 1568s tests/util/test_typing.py ..... [ 99%] 1568s tests/vis/test_plotters.py ... [100%] 1568s 1568s ============================= slowest 30 durations ============================= 1568s 56.64s call tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 1568s 33.76s call tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 1568s 33.01s call tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 1568s 25.39s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 1568s 19.92s call tests/core/test_surface.py::TestSlab::test_symmetrization 1568s 19.78s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 1568s 19.78s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 1568s 19.61s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 1568s 19.48s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 1568s 19.29s call tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 1568s 19.25s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 1568s 19.19s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 1568s 18.97s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 1568s 18.94s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 1568s 18.93s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 1568s 18.79s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 1568s 18.08s call tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 1568s 15.93s call tests/io/vasp/test_optics.py::TestVasprun::test_optics 1568s 15.81s call tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 1568s 15.44s call tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 1568s 14.63s call tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1568s 14.55s call tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation 1568s 13.54s call tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states 1568s 13.29s call tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops 1568s 12.76s call tests/ext/test_optimade.py::TestOptimade::test_update_aliases 1568s 12.07s call tests/core/test_surface.py::TestSlab::test_get_symmetric_sites 1568s 11.56s call tests/core/test_trajectory.py::TestTrajectory::test_xdatcar_write 1568s 11.49s call tests/core/test_trajectory.py::TestTrajectory::test_extend 1568s 11.39s call tests/core/test_surface.py::TestMillerIndexFinder::test_generate_all_slabs 1568s 10.90s call tests/io/lobster/test_inputs.py::TestLobsterin::test_standard_with_energy_range_from_vasprun 1568s =========================== short test summary info ============================ 1568s SKIPPED [1] tests/analysis/test_functional_groups.py:16: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 1568s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 1568s SKIPPED [1] tests/io/test_babel.py:17: could not import 'openbabel.pybel': No module named '_openbabel' 1568s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 1568s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml' 1568s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 1568s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 1568s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this 1568s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this 1568s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:263: enumlib not present 1568s SKIPPED [3] tests/analysis/test_bond_dissociation.py:17: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/analysis/test_fragmenter.py:83: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/analysis/test_fragmenter.py:68: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/analysis/test_fragmenter.py:74: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/analysis/test_fragmenter.py:111: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/analysis/test_fragmenter.py:161: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/analysis/test_graphs.py:347: graphviz executables not present 1568s SKIPPED [1] tests/analysis/test_graphs.py:588: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [2] tests/analysis/test_local_env.py:294: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/analysis/test_local_env.py:1355: critic2 executable not present 1568s SKIPPED [1] tests/analysis/test_molecule_matcher.py:157: OBAlign is missing, Skipping 1568s SKIPPED [1] tests/analysis/test_molecule_matcher.py:164: OBAlign is missing, Skipping 1568s SKIPPED [1] tests/analysis/test_molecule_matcher.py:176: OBAlign is missing, Skipping 1568s SKIPPED [1] tests/analysis/test_molecule_matcher.py:243: OBAlign is missing, Skipping 1568s SKIPPED [1] tests/analysis/test_molecule_matcher.py:250: OBAlign is missing, Skipping 1568s SKIPPED [1] tests/analysis/test_molecule_matcher.py:257: OBAlign is missing, Skipping 1568s SKIPPED [1] tests/analysis/test_molecule_matcher.py:264: OBAlign is missing, Skipping 1568s SKIPPED [1] tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this 1568s SKIPPED [1] tests/analysis/test_surface_analysis.py:263: TODO: need someone to fix this 1568s SKIPPED [1] tests/analysis/test_surface_analysis.py:270: TODO: need someone to fix this 1568s SKIPPED [1] tests/analysis/test_surface_analysis.py:278: TODO: need someone to fix this 1568s SKIPPED [1] tests/analysis/test_surface_analysis.py:256: TODO: need someone to fix this 1568s SKIPPED [1] tests/analysis/test_surface_analysis.py:286: TODO: need someone to fix this 1568s SKIPPED [1] tests/command_line/test_bader_caller.py:119: bader executable not present 1568s SKIPPED [1] tests/command_line/test_bader_caller.py:84: bader executable not present 1568s SKIPPED [1] tests/command_line/test_bader_caller.py:66: bader executable not present 1568s SKIPPED [1] tests/command_line/test_bader_caller.py:134: bader executable not present 1568s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present 1568s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present 1568s SKIPPED [1] tests/command_line/test_enumlib_caller.py:92: enum_lib not present. 1568s SKIPPED [1] tests/command_line/test_enumlib_caller.py:80: enum_lib not present. 1568s SKIPPED [1] tests/command_line/test_enumlib_caller.py:122: enum_lib not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:74: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:181: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:148: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:236: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:272: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:139: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:144: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:135: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:130: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:126: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:283: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:320: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:332: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:345: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:352: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:363: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:359: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:383: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:373: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:379: gulp not present. 1568s SKIPPED [1] tests/command_line/test_gulp_caller.py:386: gulp not present. 1568s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present 1568s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present 1568s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present 1568s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present 1568s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present 1568s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present 1568s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present 1568s SKIPPED [1] tests/command_line/test_vampire_caller.py:34: vampire executable not present 1568s SKIPPED [1] tests/core/test_structure.py:712: Only run this in CI tests 1568s SKIPPED [1] tests/core/test_structure.py:105: enumlib or mcsqs executable not present 1568s SKIPPED [1] tests/core/test_structure.py:1832: chgnet is failing with Numpy 1, see #3992 1568s SKIPPED [1] tests/core/test_structure.py:1904: TODO: #3958 wait for matgl resolve of torch dependency 1568s SKIPPED [1] tests/core/test_structure.py:985: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR. 1568s SKIPPED [1] tests/core/test_structure.py:1807: chgnet is failing with Numpy 1, see #3992 1568s SKIPPED [1] tests/core/test_structure.py:1916: TODO: #3958 wait for matgl resolve of torch dependency 1568s SKIPPED [1] tests/core/test_structure.py:1927: TODO: #3958 wait for matgl resolve of torch dependency 1568s SKIPPED [1] tests/core/test_structure.py:1936: TODO: #3958 wait for matgl resolve of torch dependency 1568s SKIPPED [1] tests/core/test_structure.py:2567: could not import 'tblite': No module named 'tblite' 1568s SKIPPED [1] tests/core/test_structure.py:2575: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 1568s SKIPPED [1] tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily 1568s SKIPPED [1] tests/core/test_xcfunc.py:56: TODO: 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:252: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:219: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:239: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:167: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:197: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:230: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:99: No FDINT 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:121: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:201: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:130: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:114: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:84: No FDINT 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:205: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:139: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:155: No x_trans. 1568s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:41: No x_trans. 1568s SKIPPED [19] tests/electronic_structure/test_plotter.py: No x_trans executable found 1568s SKIPPED [1] tests/io/exciting/test_inputs.py:136: inconsistent data 1568s SKIPPED [1] tests/io/qchem/test_outputs.py:350: OpenBabel not installed. 1568s SKIPPED [1] tests/io/test_cif.py:292: non-free PF*.cif test files are not available 1568s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded. 1568s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded. 1568s SKIPPED [1] tests/io/test_packmol.py:199: could not import 'openbabel': No module named '_openbabel' 1568s SKIPPED [1] tests/io/vasp/test_inputs.py:1469: TODO: need someone to fix this 1568s SKIPPED [1] tests/symmetry/test_kpaths.py:21: No seek path present. 1568s SKIPPED [1] tests/test_pkg.py:11: SRC_TXT_PATH='src/pymatgen.egg-info/SOURCES.txt' not found. Run `pip install .` to create 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:97: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:158: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:188: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:203: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:229: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:241: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:356: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:296: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:334: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:326: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:344: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:484: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:532: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:541: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:599: mcsqs not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:609: mcsqs not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:630: mcsqs not present. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:662: icet not installed. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:648: icet not installed. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:673: icet not installed. 1568s SKIPPED [1] tests/transformations/test_advanced_transformations.py:866: hiphive not present 1568s SKIPPED [1] tests/transformations/test_site_transformations.py:213: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_standard_transformations.py:227: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_standard_transformations.py:244: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_standard_transformations.py:262: enum_lib not present. 1568s SKIPPED [1] tests/transformations/test_standard_transformations.py:268: enum_lib not present. 1568s ======== 2497 passed, 164 skipped, 282 deselected in 1377.96s (0:22:57) ======== 1589s ============================= test session starts ============================== 1589s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 1589s rootdir: /tmp/autopkgtest.zx9QEQ/build.V9t/src 1589s configfile: pyproject.toml 1589s plugins: typeguard-4.4.1 1589s collected 2953 items / 286 deselected / 6 skipped / 2667 selected 1589s 1591s tests/alchemy/test_filters.py ....... [ 0%] 1591s tests/alchemy/test_materials.py ......... [ 0%] 1591s tests/alchemy/test_transmuters.py . [ 0%] 1594s tests/analysis/chemenv/connectivity/test_connected_components.py ..... [ 0%] 1594s tests/analysis/chemenv/connectivity/test_environment_nodes.py ... [ 0%] 1594s tests/analysis/chemenv/connectivity/test_structure_connectivity.py . [ 0%] 1594s tests/analysis/chemenv/coordination_environments/test_chemenv_strategies.py . [ 1%] 1594s . [ 1%] 1594s tests/analysis/chemenv/coordination_environments/test_coordination_geometries.py . [ 1%] 1594s .. [ 1%] 1594s tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py . [ 1%] 1600s ..ss [ 1%] 1603s tests/analysis/chemenv/coordination_environments/test_structure_environments.py . [ 1%] 1603s .. [ 1%] 1603s tests/analysis/chemenv/coordination_environments/test_voronoi.py .. [ 1%] 1604s tests/analysis/chemenv/coordination_environments/test_weights.py ....... [ 1%] 1604s [ 1%] 1604s tests/analysis/chemenv/utils/test_chemenv_config.py . [ 1%] 1604s tests/analysis/chemenv/utils/test_coordination_geometry_utils.py ....... [ 2%] 1604s ..... [ 2%] 1604s tests/analysis/chemenv/utils/test_func_utils.py ... [ 2%] 1604s tests/analysis/chemenv/utils/test_graph_utils.py .... [ 2%] 1604s tests/analysis/chemenv/utils/test_math_utils.py ......... [ 2%] 1605s tests/analysis/diffraction/test_neutron.py .. [ 2%] 1606s tests/analysis/diffraction/test_tem.py .................... [ 3%] 1607s tests/analysis/diffraction/test_xrd.py .. [ 3%] 1652s tests/analysis/elasticity/test_elastic.py ......................... [ 4%] 1652s tests/analysis/elasticity/test_strain.py ........ [ 5%] 1652s tests/analysis/elasticity/test_stress.py . [ 5%] 1659s tests/analysis/ferroelectricity/test_polarization.py ............ [ 5%] 1662s tests/analysis/interfaces/test_coherent_interface.py ... [ 5%] 1669s tests/analysis/interfaces/test_substrate_analyzer.py .. [ 5%] 1669s tests/analysis/interfaces/test_zsl.py .. [ 5%] 1679s tests/analysis/magnetism/test_analyzer.py .........s. [ 6%] 1679s tests/analysis/magnetism/test_heisenberg.py ....... [ 6%] 1680s tests/analysis/magnetism/test_jahnteller.py ... [ 6%] 1680s tests/analysis/solar/test_slme.py . [ 6%] 1681s tests/analysis/structure_prediction/test_dopant_predictor.py .. [ 6%] 1682s tests/analysis/structure_prediction/test_substitution_probability.py ... [ 6%] 1682s [ 6%] 1682s tests/analysis/structure_prediction/test_substitutor.py .. [ 6%] 1682s tests/analysis/structure_prediction/test_volume_predictor.py ... [ 6%] 1726s tests/analysis/test_adsorption.py ...... [ 7%] 1728s tests/analysis/test_bond_dissociation.py ... [ 7%] 1728s tests/analysis/test_bond_valence.py .... [ 7%] 1731s tests/analysis/test_chempot_diagram.py ........... [ 7%] 1731s tests/analysis/test_cost.py .... [ 8%] 1736s tests/analysis/test_dimensionality.py .......... [ 8%] 1736s tests/analysis/test_disorder.py . [ 8%] 1736s tests/analysis/test_energy_models.py ...... [ 8%] 1737s tests/analysis/test_eos.py ...... [ 8%] 1737s tests/analysis/test_ewald.py ... [ 8%] 1779s tests/analysis/test_fragmenter.py .......... [ 9%] 1780s tests/analysis/test_functional_groups.py ...... [ 9%] 1794s tests/analysis/test_graphs.py ..s............................... [ 10%] 1794s tests/analysis/test_hhi.py . [ 10%] 1795s tests/analysis/test_interface_reactions.py .................. [ 11%] 1810s tests/analysis/test_local_env.py ....................................s.. [ 13%] 1810s ... [ 13%] 1810s tests/analysis/test_molecule_matcher.py ................................ [ 14%] 1812s .......................... [ 15%] 1812s tests/analysis/test_molecule_structure_comparator.py ...s. [ 15%] 1812s tests/analysis/test_nmr.py ...... [ 15%] 1814s tests/analysis/test_phase_diagram.py ................................... [ 17%] 1829s .................................................... [ 19%] 1829s tests/analysis/test_piezo.py ... [ 19%] 1831s tests/analysis/test_piezo_sensitivity.py .............. [ 19%] 1833s tests/analysis/test_pourbaix_diagram.py .................. [ 20%] 1843s tests/analysis/test_prototypes.py . [ 20%] 1843s tests/analysis/test_quasi_harmonic_debye_approx.py ............. [ 20%] 1846s tests/analysis/test_quasirrho.py ...... [ 21%] 1846s tests/analysis/test_reaction_calculator.py ..................... [ 21%] 1862s tests/analysis/test_structure_analyzer.py ......... [ 22%] 1863s tests/analysis/test_structure_matcher.py ............................. [ 23%] 1871s tests/analysis/test_surface_analysis.py ....sss....s.s..... [ 23%] 1899s tests/analysis/test_transition_state.py ... [ 24%] 1900s tests/analysis/test_wulff.py ..... [ 24%] 1900s tests/analysis/test_xps.py . [ 24%] 1909s tests/analysis/topological/test_spillage.py . [ 24%] 1909s tests/analysis/xas/test_spectrum.py ........... [ 24%] 1910s tests/apps/battery/test_analyzer.py .... 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[ 28%] 1940s tests/core/test_composition.py ......................................... [ 29%] 1940s ............ [ 30%] 1953s tests/core/test_interface.py ...................... [ 30%] 1953s tests/core/test_ion.py ............... [ 31%] 1954s tests/core/test_lattice.py ................................ [ 32%] 1954s tests/core/test_libxcfunc.py .. [ 32%] 1954s tests/core/test_molecular_orbitals.py .... [ 32%] 1954s tests/core/test_operations.py ................ [ 33%] 1954s tests/core/test_periodic_table.py ...................................... [ 34%] 1954s .................... [ 35%] 1954s tests/core/test_settings.py .. [ 35%] 1954s tests/core/test_sites.py .................... [ 36%] 1954s tests/core/test_spectrum.py ..... [ 36%] 1957s tests/core/test_structure.py .................s.......s................. [ 38%] 1974s ..................ss....s.................ssss.......................... [ 41%] 1974s ....................s.......s....... [ 42%] 2061s tests/core/test_surface.py .......................s.... [ 43%] 2066s tests/core/test_tensors.py ............................ [ 44%] 2115s tests/core/test_trajectory.py ................. [ 45%] 2115s tests/core/test_units.py ................. [ 45%] 2115s tests/core/test_xcfunc.py ....s. [ 46%] 2122s tests/electronic_structure/test_bandstructure.py ....................... [ 46%] 2129s ......... [ 47%] 2129s tests/electronic_structure/test_boltztrap.py ssssssssssssssss [ 47%] 2162s tests/electronic_structure/test_cohp.py .............................. [ 48%] 2162s tests/electronic_structure/test_core.py .......... [ 49%] 2174s tests/electronic_structure/test_dos.py ......................... [ 50%] 2226s tests/electronic_structure/test_plotter.py ...............ssssssssssssss [ 51%] 2227s sssss..... [ 51%] 2230s tests/entries/test_compatibility.py .................................... [ 53%] 2231s ................................................... [ 54%] 2231s tests/entries/test_computed_entries.py ................................. [ 56%] 2232s .... [ 56%] 2233s tests/entries/test_correction_calculator.py .... [ 56%] 2247s tests/entries/test_entry_tools.py ....... [ 56%] 2247s tests/entries/test_exp_entries.py ... [ 56%] 2248s tests/entries/test_mixing_scheme.py ............................... [ 58%] 2249s tests/ext/test_cod.py .. [ 58%] 2262s tests/ext/test_optimade.py ..... [ 58%] 2262s tests/io/abinit/test_abiobjects.py ......... [ 58%] 2262s tests/io/abinit/test_inputs.py ........ [ 58%] 2262s tests/io/abinit/test_netcdf.py ... [ 59%] 2262s tests/io/abinit/test_pseudos.py ...... [ 59%] 2263s tests/io/aims/sets/test_bs_generator.py ... [ 59%] 2263s tests/io/aims/sets/test_gw_generator.py . [ 59%] 2263s tests/io/aims/sets/test_input_set.py . [ 59%] 2263s tests/io/aims/sets/test_md_generator.py . [ 59%] 2263s tests/io/aims/sets/test_relax_generator.py ... [ 59%] 2263s tests/io/aims/sets/test_static_generator.py .... [ 59%] 2263s tests/io/aims/sets/test_static_restart_from_relax_generator.py ..... [ 59%] 2263s tests/io/aims/test_inputs.py ...... [ 60%] 2263s tests/io/aims/test_outputs.py ...... [ 60%] 2263s tests/io/aims/test_parsers.py .......................................... [ 61%] 2264s ...................................................... [ 64%] 2264s tests/io/cp2k/test_inputs.py .............. [ 64%] 2264s tests/io/cp2k/test_outputs.py ....... [ 64%] 2264s tests/io/exciting/test_inputs.py .s.. [ 64%] 2264s tests/io/feff/test_inputs.py .................. [ 65%] 2264s tests/io/feff/test_outputs.py ...... [ 65%] 2280s tests/io/lammps/test_data.py ............................. [ 66%] 2280s tests/io/lammps/test_generators.py . [ 66%] 2281s tests/io/lammps/test_inputs.py ..................... [ 67%] 2281s tests/io/lammps/test_outputs.py .... [ 67%] 2283s tests/io/lammps/test_utils.py ... [ 68%] 2293s tests/io/lobster/test_inputs.py ................ 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[ 78%] 2382s tests/io/test_multiwfn.py ..... [ 78%] 2383s tests/io/test_nwchem.py ............ [ 79%] 2383s tests/io/test_optimade.py . [ 79%] 2398s tests/io/test_packmol.py ......... [ 79%] 2428s tests/io/test_phonopy.py ........... [ 80%] 2428s tests/io/test_prismatic.py . [ 80%] 2428s tests/io/test_pwscf.py ............. [ 80%] 2428s tests/io/test_res.py ............... [ 81%] 2428s tests/io/test_template_input.py . [ 81%] 2428s tests/io/test_wannier90.py .... [ 81%] 2428s tests/io/test_xcrysden.py .... [ 81%] 2428s tests/io/test_xr.py .. [ 81%] 2428s tests/io/test_xyz.py ........ [ 81%] 2429s tests/io/vasp/test_help.py ... [ 81%] 2429s tests/io/vasp/test_inputs.py ........................................... [ 83%] 2432s .........................s............. [ 85%] 2447s tests/io/vasp/test_optics.py ... [ 85%] 2499s tests/io/vasp/test_outputs.py .......................................... [ 86%] 2550s ................................................................. [ 89%] 2550s tests/io/xtb/test_inputs.py .. [ 89%] 2550s tests/optimization/test_linear_assignment.py .... [ 89%] 2550s tests/optimization/test_neighbors.py . [ 89%] 2552s tests/phonon/test_bandstructure.py ........... [ 89%] 2552s tests/phonon/test_dos.py ................... [ 90%] 2777s tests/phonon/test_gruneisen.py .............. [ 91%] 2777s tests/phonon/test_ir_spectra.py . [ 91%] 2786s tests/phonon/test_plotter.py ........ [ 91%] 2786s tests/phonon/test_thermal_displacements.py .............. [ 91%] 2789s tests/symmetry/test_analyzer.py ................................. [ 93%] 2830s tests/symmetry/test_groups.py ........................ [ 94%] 2865s tests/symmetry/test_kpath_lm.py ... [ 94%] 2880s tests/symmetry/test_kpath_sc.py .. [ 94%] 2881s tests/symmetry/test_kpaths.py .s [ 94%] 2882s tests/symmetry/test_maggroups.py ...... [ 94%] 2882s tests/symmetry/test_settings.py .... [ 94%] 2882s tests/symmetry/test_site_symmetries.py . [ 94%] 2882s tests/test_pkg.py s [ 94%] 2882s tests/transformations/test_advanced_transformations.py .s..sssss..ssssss [ 95%] 2940s ss...ssssss....s [ 95%] 2940s tests/transformations/test_site_transformations.py ...........s...... [ 96%] 2941s tests/transformations/test_standard_transformations.py ............ssss. [ 97%] 2945s ........... [ 97%] 2945s tests/util/test_coord.py ...................... [ 98%] 2945s tests/util/test_graph_hashing.py .. [ 98%] 2945s tests/util/test_io.py . [ 98%] 2945s tests/util/test_misc.py ...... [ 98%] 2945s tests/util/test_num.py . [ 98%] 2946s tests/util/test_plotting.py .. [ 98%] 2946s tests/util/test_provenance.py ........ [ 99%] 2946s tests/util/test_string.py ........... [ 99%] 2946s tests/util/test_typing.py ..... [ 99%] 2946s tests/vis/test_plotters.py ... [100%] 2946s 2946s ============================= slowest 30 durations ============================= 2946s 56.29s call tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 2946s 34.52s call tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 2946s 34.28s call tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 2946s 26.16s call tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 2946s 25.42s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 2946s 20.86s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 2946s 19.96s call tests/core/test_surface.py::TestSlab::test_symmetrization 2946s 19.88s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 2946s 19.47s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 2946s 19.29s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 2946s 19.17s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 2946s 19.13s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 2946s 19.01s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 2946s 18.88s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 2946s 18.82s call tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 2946s 18.70s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 2946s 18.56s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 2946s 17.14s call tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 2946s 15.79s call tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 2946s 15.38s call tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation 2946s 15.07s call tests/io/vasp/test_optics.py::TestVasprun::test_optics 2946s 13.74s call tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 2946s 13.39s call tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops 2946s 12.29s call tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states 2946s 12.00s call tests/core/test_surface.py::TestSlab::test_get_symmetric_sites 2946s 11.81s call tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 2946s 11.38s call tests/core/test_trajectory.py::TestTrajectory::test_extend 2946s 11.20s call tests/core/test_trajectory.py::TestTrajectory::test_conversion 2946s 11.19s call tests/core/test_trajectory.py::TestTrajectory::test_xdatcar_write 2946s 10.52s call tests/core/test_surface.py::TestMillerIndexFinder::test_generate_all_slabs 2946s =========================== short test summary info ============================ 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 2946s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 2946s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 2946s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml' 2946s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 2946s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 2946s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this 2946s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this 2946s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:263: enumlib not present 2946s SKIPPED [1] tests/analysis/test_graphs.py:347: graphviz executables not present 2946s SKIPPED [1] tests/analysis/test_local_env.py:1355: critic2 executable not present 2946s SKIPPED [1] tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this 2946s SKIPPED [1] tests/analysis/test_surface_analysis.py:263: TODO: need someone to fix this 2946s SKIPPED [1] tests/analysis/test_surface_analysis.py:270: TODO: need someone to fix this 2946s SKIPPED [1] tests/analysis/test_surface_analysis.py:278: TODO: need someone to fix this 2946s SKIPPED [1] tests/analysis/test_surface_analysis.py:256: TODO: need someone to fix this 2946s SKIPPED [1] tests/analysis/test_surface_analysis.py:286: TODO: need someone to fix this 2946s SKIPPED [1] tests/command_line/test_bader_caller.py:119: bader executable not present 2946s SKIPPED [1] tests/command_line/test_bader_caller.py:84: bader executable not present 2946s SKIPPED [1] tests/command_line/test_bader_caller.py:66: bader executable not present 2946s SKIPPED [1] tests/command_line/test_bader_caller.py:134: bader executable not present 2946s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present 2946s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present 2946s SKIPPED [1] tests/command_line/test_enumlib_caller.py:92: enum_lib not present. 2946s SKIPPED [1] tests/command_line/test_enumlib_caller.py:80: enum_lib not present. 2946s SKIPPED [1] tests/command_line/test_enumlib_caller.py:122: enum_lib not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:74: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:181: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:148: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:236: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:272: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:139: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:144: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:135: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:130: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:126: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:283: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:320: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:332: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:345: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:352: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:363: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:359: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:383: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:373: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:379: gulp not present. 2946s SKIPPED [1] tests/command_line/test_gulp_caller.py:386: gulp not present. 2946s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present 2946s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present 2946s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present 2946s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present 2946s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present 2946s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present 2946s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present 2946s SKIPPED [1] tests/command_line/test_vampire_caller.py:34: vampire executable not present 2946s SKIPPED [1] tests/core/test_structure.py:712: Only run this in CI tests 2946s SKIPPED [1] tests/core/test_structure.py:105: enumlib or mcsqs executable not present 2946s SKIPPED [1] tests/core/test_structure.py:1832: chgnet is failing with Numpy 1, see #3992 2946s SKIPPED [1] tests/core/test_structure.py:1904: TODO: #3958 wait for matgl resolve of torch dependency 2946s SKIPPED [1] tests/core/test_structure.py:985: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR. 2946s SKIPPED [1] tests/core/test_structure.py:1807: chgnet is failing with Numpy 1, see #3992 2946s SKIPPED [1] tests/core/test_structure.py:1916: TODO: #3958 wait for matgl resolve of torch dependency 2946s SKIPPED [1] tests/core/test_structure.py:1927: TODO: #3958 wait for matgl resolve of torch dependency 2946s SKIPPED [1] tests/core/test_structure.py:1936: TODO: #3958 wait for matgl resolve of torch dependency 2946s SKIPPED [1] tests/core/test_structure.py:2567: could not import 'tblite': No module named 'tblite' 2946s SKIPPED [1] tests/core/test_structure.py:2575: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 2946s SKIPPED [1] tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily 2946s SKIPPED [1] tests/core/test_xcfunc.py:56: TODO: 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:252: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:219: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:239: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:167: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:197: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:230: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:99: No FDINT 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:121: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:201: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:130: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:114: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:84: No FDINT 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:205: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:139: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:155: No x_trans. 2946s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:41: No x_trans. 2946s SKIPPED [19] tests/electronic_structure/test_plotter.py: No x_trans executable found 2946s SKIPPED [1] tests/io/exciting/test_inputs.py:136: inconsistent data 2946s SKIPPED [1] tests/io/test_cif.py:292: non-free PF*.cif test files are not available 2946s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded. 2946s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded. 2946s SKIPPED [1] tests/io/vasp/test_inputs.py:1469: TODO: need someone to fix this 2946s SKIPPED [1] tests/symmetry/test_kpaths.py:21: No seek path present. 2946s SKIPPED [1] tests/test_pkg.py:11: SRC_TXT_PATH='src/pymatgen.egg-info/SOURCES.txt' not found. Run `pip install .` to create 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:97: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:158: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:188: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:203: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:229: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:241: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:356: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:296: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:334: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:326: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:344: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:484: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:532: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:541: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:599: mcsqs not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:609: mcsqs not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:630: mcsqs not present. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:662: icet not installed. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:648: icet not installed. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:673: icet not installed. 2946s SKIPPED [1] tests/transformations/test_advanced_transformations.py:866: hiphive not present 2946s SKIPPED [1] tests/transformations/test_site_transformations.py:213: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_standard_transformations.py:227: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_standard_transformations.py:244: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_standard_transformations.py:262: enum_lib not present. 2946s SKIPPED [1] tests/transformations/test_standard_transformations.py:268: enum_lib not present. 2946s ======== 2531 passed, 142 skipped, 286 deselected in 1374.52s (0:22:54) ======== 2946s ..tot conformations = 3 2946s ..tot confs tested = 3 2946s ..below energy threshold = 3 2950s autopkgtest [21:28:27]: test test-pymatgen: -----------------------] 2950s test-pymatgen PASS 2950s autopkgtest [21:28:27]: test test-pymatgen: - - - - - - - - - - results - - - - - - - - - - 2950s autopkgtest [21:28:27]: test test-pymatgen-net: preparing testbed 3001s autopkgtest [21:29:18]: testbed dpkg architecture: amd64 3001s autopkgtest [21:29:18]: testbed apt version: 2.9.30ubuntu1 3001s autopkgtest [21:29:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 3001s autopkgtest [21:29:18]: testbed release detected to be: plucky 3002s autopkgtest [21:29:19]: updating testbed package index (apt update) 3002s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 3002s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 3002s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 3002s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 3002s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 3002s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 3002s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [68.9 kB] 3002s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [503 kB] 3002s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [88.6 kB] 3002s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [122 kB] 3002s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B] 3002s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B] 3002s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [238 kB] 3002s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [466 kB] 3002s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [20.9 kB] 3002s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8844 B] 3002s Fetched 1654 kB in 0s (7658 kB/s) 3003s Reading package lists... 3003s Reading package lists... 3003s Building dependency tree... 3003s Reading state information... 3004s Calculating upgrade... 3004s Calculating upgrade... 3004s The following packages will be upgraded: 3004s apport apport-core-dump-handler curl dracut-install kmod libarchive13t64 3004s libcap2 libcap2-bin libcurl3t64-gnutls libcurl4t64 libdebconfclient0 3004s libgmp10 libkmod2 libpam-cap libpcre2-8-0 libxml2 openssh-client 3004s openssh-server openssh-sftp-server python3-apport python3-problem-report 3004s sudo 3004s 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3004s Need to get 6171 kB of archives. 3004s After this operation, 383 kB of additional disk space will be used. 3004s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-problem-report all 2.31.0+git20250220-0ubuntu2 [26.1 kB] 3004s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apport all 2.31.0+git20250220-0ubuntu2 [93.5 kB] 3004s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 apport-core-dump-handler all 2.31.0+git20250220-0ubuntu2 [18.9 kB] 3004s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 apport all 2.31.0+git20250220-0ubuntu2 [83.1 kB] 3004s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-sftp-server amd64 1:9.9p1-3ubuntu3 [41.2 kB] 3004s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-server amd64 1:9.9p1-3ubuntu3 [625 kB] 3004s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-client amd64 1:9.9p1-3ubuntu3 [1080 kB] 3004s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap2 amd64 1:2.73-4ubuntu1 [32.3 kB] 3004s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebconfclient0 amd64 0.277ubuntu1 [12.0 kB] 3004s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3ubuntu1 [256 kB] 3004s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-8-0 amd64 10.45-1 [287 kB] 3004s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 kmod amd64 33+20240816-2ubuntu1 [109 kB] 3004s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libkmod2 amd64 33+20240816-2ubuntu1 [56.6 kB] 3004s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-cap amd64 1:2.73-4ubuntu1 [12.7 kB] 3004s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap2-bin amd64 1:2.73-4ubuntu1 [34.9 kB] 3004s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu4 [772 kB] 3004s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 sudo amd64 1.9.16p2-1ubuntu1 [1011 kB] 3004s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-2ubuntu1 [251 kB] 3004s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-2ubuntu1 [437 kB] 3004s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 dracut-install amd64 106-2ubuntu2 [36.8 kB] 3004s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive13t64 amd64 3.7.7-0ubuntu2 [462 kB] 3004s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-2ubuntu1 [432 kB] 3005s Preconfiguring packages ... 3005s Fetched 6171 kB in 0s (39.6 MB/s) 3005s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 3005s Preparing to unpack .../0-python3-problem-report_2.31.0+git20250220-0ubuntu2_all.deb ... 3005s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 3005s for fn in glob1(directory, "%s.*" % fname): 3005s Unpacking python3-problem-report (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 3005s Preparing to unpack .../1-python3-apport_2.31.0+git20250220-0ubuntu2_all.deb ... 3005s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 3005s for fn in glob1(directory, "%s.*" % fname): 3005s Unpacking python3-apport (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 3005s Preparing to unpack .../2-apport-core-dump-handler_2.31.0+git20250220-0ubuntu2_all.deb ... 3005s Unpacking apport-core-dump-handler (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 3005s Preparing to unpack .../3-apport_2.31.0+git20250220-0ubuntu2_all.deb ... 3005s Unpacking apport (2.31.0+git20250220-0ubuntu2) over (2.31.0+git20250220-0ubuntu1) ... 3006s Preparing to unpack .../4-openssh-sftp-server_1%3a9.9p1-3ubuntu3_amd64.deb ... 3006s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu3) over (1:9.9p1-3ubuntu2) ... 3006s Preparing to unpack .../5-openssh-server_1%3a9.9p1-3ubuntu3_amd64.deb ... 3006s Unpacking openssh-server (1:9.9p1-3ubuntu3) over (1:9.9p1-3ubuntu2) ... 3006s Preparing to unpack .../6-openssh-client_1%3a9.9p1-3ubuntu3_amd64.deb ... 3006s Unpacking openssh-client (1:9.9p1-3ubuntu3) over (1:9.9p1-3ubuntu2) ... 3006s Preparing to unpack .../7-libcap2_1%3a2.73-4ubuntu1_amd64.deb ... 3006s Unpacking libcap2:amd64 (1:2.73-4ubuntu1) over (1:2.66-5ubuntu3) ... 3006s Setting up libcap2:amd64 (1:2.73-4ubuntu1) ... 3006s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 3006s Preparing to unpack .../libdebconfclient0_0.277ubuntu1_amd64.deb ... 3006s Unpacking libdebconfclient0:amd64 (0.277ubuntu1) over (0.274ubuntu1) ... 3006s Setting up libdebconfclient0:amd64 (0.277ubuntu1) ... 3006s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 3006s Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-3ubuntu1_amd64.deb ... 3006s Unpacking libgmp10:amd64 (2:6.3.0+dfsg-3ubuntu1) over (2:6.3.0+dfsg-2ubuntu7) ... 3006s Setting up libgmp10:amd64 (2:6.3.0+dfsg-3ubuntu1) ... 3006s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 3006s Preparing to unpack .../libpcre2-8-0_10.45-1_amd64.deb ... 3006s Unpacking libpcre2-8-0:amd64 (10.45-1) over (10.42-4ubuntu3) ... 3006s Setting up libpcre2-8-0:amd64 (10.45-1) ... 3006s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 3006s Preparing to unpack .../00-kmod_33+20240816-2ubuntu1_amd64.deb ... 3006s Unpacking kmod (33+20240816-2ubuntu1) over (31+20240202-2ubuntu8) ... 3006s Preparing to unpack .../01-libkmod2_33+20240816-2ubuntu1_amd64.deb ... 3006s Unpacking libkmod2:amd64 (33+20240816-2ubuntu1) over (31+20240202-2ubuntu8) ... 3007s Preparing to unpack .../02-libpam-cap_1%3a2.73-4ubuntu1_amd64.deb ... 3007s Unpacking libpam-cap:amd64 (1:2.73-4ubuntu1) over (1:2.66-5ubuntu3) ... 3007s Preparing to unpack .../03-libcap2-bin_1%3a2.73-4ubuntu1_amd64.deb ... 3007s Unpacking libcap2-bin (1:2.73-4ubuntu1) over (1:2.66-5ubuntu3) ... 3007s Preparing to unpack .../04-libxml2_2.12.7+dfsg+really2.9.14-0.2ubuntu4_amd64.deb ... 3007s Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu4) over (2.12.7+dfsg+really2.9.14-0.2ubuntu3) ... 3007s Preparing to unpack .../05-sudo_1.9.16p2-1ubuntu1_amd64.deb ... 3007s Unpacking sudo (1.9.16p2-1ubuntu1) over (1.9.15p5-3ubuntu5) ... 3007s Preparing to unpack .../06-curl_8.12.1-2ubuntu1_amd64.deb ... 3007s Unpacking curl (8.12.1-2ubuntu1) over (8.12.0+git20250209.89ed161+ds-1ubuntu1) ... 3007s Preparing to unpack .../07-libcurl4t64_8.12.1-2ubuntu1_amd64.deb ... 3007s Unpacking libcurl4t64:amd64 (8.12.1-2ubuntu1) over (8.12.0+git20250209.89ed161+ds-1ubuntu1) ... 3007s Preparing to unpack .../08-dracut-install_106-2ubuntu2_amd64.deb ... 3007s Unpacking dracut-install (106-2ubuntu2) over (106-2ubuntu1) ... 3007s Preparing to unpack .../09-libarchive13t64_3.7.7-0ubuntu2_amd64.deb ... 3007s Unpacking libarchive13t64:amd64 (3.7.7-0ubuntu2) over (3.7.7-0ubuntu1) ... 3007s Preparing to unpack .../10-libcurl3t64-gnutls_8.12.1-2ubuntu1_amd64.deb ... 3007s Unpacking libcurl3t64-gnutls:amd64 (8.12.1-2ubuntu1) over (8.12.0+git20250209.89ed161+ds-1ubuntu1) ... 3007s Setting up libcurl4t64:amd64 (8.12.1-2ubuntu1) ... 3007s Setting up python3-problem-report (2.31.0+git20250220-0ubuntu2) ... 3007s Setting up openssh-client (1:9.9p1-3ubuntu3) ... 3007s Setting up libcurl3t64-gnutls:amd64 (8.12.1-2ubuntu1) ... 3007s Setting up python3-apport (2.31.0+git20250220-0ubuntu2) ... 3007s Setting up libcap2-bin (1:2.73-4ubuntu1) ... 3007s Setting up sudo (1.9.16p2-1ubuntu1) ... 3007s Installing new version of config file /etc/sudo.conf ... 3007s Setting up curl (8.12.1-2ubuntu1) ... 3007s Setting up libpam-cap:amd64 (1:2.73-4ubuntu1) ... 3008s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu4) ... 3008s Setting up libkmod2:amd64 (33+20240816-2ubuntu1) ... 3008s Setting up openssh-sftp-server (1:9.9p1-3ubuntu3) ... 3008s Setting up openssh-server (1:9.9p1-3ubuntu3) ... 3009s Setting up kmod (33+20240816-2ubuntu1) ... 3009s Setting up dracut-install (106-2ubuntu2) ... 3009s Setting up libarchive13t64:amd64 (3.7.7-0ubuntu2) ... 3009s Setting up apport-core-dump-handler (2.31.0+git20250220-0ubuntu2) ... 3010s Setting up apport (2.31.0+git20250220-0ubuntu2) ... 3011s apport-autoreport.service is a disabled or a static unit not running, not starting it. 3011s Processing triggers for initramfs-tools (0.145ubuntu2) ... 3011s update-initramfs: Generating /boot/initrd.img-6.12.0-15-generic 3011s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 3022s Processing triggers for libc-bin (2.40-4ubuntu1) ... 3022s Processing triggers for ufw (0.36.2-9) ... 3022s Processing triggers for man-db (2.13.0-1) ... 3024s Reading package lists... 3024s Building dependency tree... 3024s Reading state information... 3024s Solving dependencies... 3025s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3025s autopkgtest [21:29:42]: upgrading testbed (apt dist-upgrade and autopurge) 3025s Reading package lists... 3025s Building dependency tree... 3025s Reading state information... 3025s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 3026s Starting 2 pkgProblemResolver with broken count: 0 3026s Done 3026s Entering ResolveByKeep 3026s 3026s Calculating upgrade... 3027s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3027s Reading package lists... 3027s Building dependency tree... 3027s Reading state information... 3027s Starting pkgProblemResolver with broken count: 0 3027s Starting 2 pkgProblemResolver with broken count: 0 3027s Done 3028s Solving dependencies... 3028s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 3028s autopkgtest [21:29:45]: rebooting testbed after setup commands that affected boot 3032s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 3044s Reading package lists... 3045s Building dependency tree... 3045s Reading state information... 3045s Starting pkgProblemResolver with broken count: 0 3045s Starting 2 pkgProblemResolver with broken count: 0 3045s Done 3046s The following NEW packages will be installed: 3046s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 3046s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 3046s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 3046s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 3046s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 3046s fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 3046s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 3046s libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3 3046s libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0 3046s libdouble-conversion3 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 3046s libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 3046s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 3046s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 3046s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 3046s libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 3046s libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 3046s libinchi1.07 libinput-bin libinput10 libisl23 libitm1 libjbig0 3046s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 3046s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26 3046s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 liblsan0 liblzf1 3046s libmaeparser1 libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnetcdf19t64 3046s libnetcdf22 libogg0 libopenbabel7 libopengl0 libopenjp2-7 libopenmpi40 3046s libpciaccess0 libpcre2-16-0 libpixman-1-0 libpmix2t64 libproj25 3046s libpsm-infinipath1 libpsm2-2 libpython3-all-dev libpython3-dev 3046s libpython3.12-dev libpython3.13-dev libqhull-r8.0 libqt5core5t64 3046s libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 libqt5widgets5t64 3046s libquadmath0 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 libstdc++-14-dev 3046s libsymspg2 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 3046s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libtool libtsan2 libubsan1 3046s libucx0 libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common libwacom9 3046s libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 3046s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 3046s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 3046s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 3046s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxft2 3046s libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 libxss1 3046s libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 3046s openmpi-bin openmpi-common packmol po-debconf proj-data 3046s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 3046s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 3046s python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson 3046s python3-build python3-cftime python3-contourpy python3-cycler 3046s python3-dateutil python3-decorator python3-defusedxml python3-dev 3046s python3-dnspython python3-docutils python3-email-validator 3046s python3-fastjsonschema python3-fonttools python3-frozendict python3-fs 3046s python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig 3046s python3-installer python3-joblib python3-jupyter-core python3-kiwisolver 3046s python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty 3046s python3-mpi4py python3-mpmath python3-nbformat python3-netcdf4 3046s python3-networkx python3-numpy python3-openbabel python3-packaging 3046s python3-palettable python3-pandas python3-pandas-lib python3-phonopy 3046s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 3046s python3-pluggy python3-pybtex python3-pydantic python3-pydantic-core 3046s python3-pymatgen python3-pyproject-hooks python3-pytest python3-pytz 3046s python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy 3046s python3-six python3-snowballstemmer python3-soupsieve python3-spglib 3046s python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery 3046s python3-sympy python3-tabulate python3-tenacity python3-tk python3-toml 3046s python3-tqdm python3-traitlets python3-tz python3-ufolib2 3046s python3-uncertainties python3-unicodedata2 python3-vtk9 python3-wheel 3046s python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-dev 3046s python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 3046s unicode-data x11-common xml-core zlib1g-dev 3046s 0 upgraded, 302 newly installed, 0 to remove and 0 not upgraded. 3046s Need to get 557 MB of archives. 3046s After this operation, 2191 MB of additional disk space will be used. 3046s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB] 3046s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 3046s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 3046s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB] 3046s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-5 [263 kB] 3046s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 3046s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 3046s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 3046s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB] 3046s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 3046s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 3046s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 3046s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 3046s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 3046s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 3046s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 3046s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 3046s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 3046s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 3046s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 3046s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 3046s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 3046s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 3046s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 3046s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 3046s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 3046s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 3046s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250213-1ubuntu1 [47.0 kB] 3046s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB] 3046s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250213-1ubuntu1 [28.5 kB] 3046s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250213-1ubuntu1 [3059 kB] 3046s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250213-1ubuntu1 [1356 kB] 3046s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250213-1ubuntu1 [2757 kB] 3046s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250213-1ubuntu1 [1206 kB] 3046s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250213-1ubuntu1 [1678 kB] 3047s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250213-1ubuntu1 [152 kB] 3047s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 3047s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 3047s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 3047s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 3047s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 3047s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 3047s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 3047s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 3047s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 3047s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 3047s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 3047s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu1 [3370 kB] 3047s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 3047s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-3build1 [168 kB] 3047s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 3047s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 3047s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 3047s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 3047s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB] 3047s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 3047s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB] 3047s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 3047s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 3047s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB] 3047s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250108 [117 kB] 3047s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 3047s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 3047s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 3047s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 3047s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 3047s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 3047s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 3047s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 3047s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 3048s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 3048s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 3048s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 3048s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 3048s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 3048s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.1ubuntu1 [260 kB] 3048s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 3048s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 3048s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 3048s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 3048s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 3048s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 3048s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 3048s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 3048s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 3048s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 3048s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.3.4-3ubuntu1 [42.9 kB] 3048s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 3048s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 3048s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 3048s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 3048s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 3048s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 3048s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 3048s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.3.4-3ubuntu1 [11.9 MB] 3048s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.3.4-3ubuntu1 [33.3 kB] 3048s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 3048s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.3.4-3ubuntu1 [136 kB] 3048s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 3048s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 3048s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 3048s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 3048s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 55.0-1ubuntu1 [71.5 kB] 3048s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 3048s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB] 3048s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 3048s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.3.4-3ubuntu1 [34.7 kB] 3048s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 3048s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 3048s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 3048s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.3.4-3ubuntu1 [146 kB] 3048s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 3048s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 3048s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 3048s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 3048s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 3048s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 3049s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 3049s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 3049s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 3049s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 3049s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 3049s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 3049s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1.07 amd64 1.07.2+dfsg-1 [702 kB] 3049s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.14.0-1 [103 kB] 3049s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 3049s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB] 3049s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 3049s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.27.1-1 [155 kB] 3049s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 3049s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 3049s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 3049s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 3049s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 3049s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 3049s Get:136 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 3049s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 3049s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 3049s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 3049s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 3049s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 3049s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 3049s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 3049s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 3049s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 3049s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB] 3049s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 3049s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 3049s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB] 3049s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 3049s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 3049s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 3049s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 3049s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.6-3 [714 kB] 3049s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 55.0-1ubuntu1 [29.7 kB] 3049s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 55.0-1ubuntu1 [42.7 kB] 3049s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 3049s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 3049s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 3049s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 3049s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 3049s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 3049s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 3049s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 3049s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 3049s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 3049s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.2-1 [5501 kB] 3049s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.13.1-1~exp2 [10.5 kB] 3049s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.9-1 [5702 kB] 3049s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.13.1-1~exp2 [922 B] 3049s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 3049s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 3049s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 3049s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 3049s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 3049s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 3049s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 3049s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 3049s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 3049s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 3049s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 3049s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 3049s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 3049s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 3049s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 3049s Get:186 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 3049s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 3049s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 3049s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 3049s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.5.0-2 [250 kB] 3049s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2022.0.0-1 [55.6 kB] 3049s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2022.0.0-1 [15.7 kB] 3049s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2022.0.0-1 [102 kB] 3049s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-5 [70.2 kB] 3049s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-5 [115 kB] 3049s Get:196 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 3049s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-1.1ubuntu3 [25.3 MB] 3049s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-1.1ubuntu3 [182 kB] 3049s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 3049s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 3049s Get:201 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 3049s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 3049s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 3050s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 packmol amd64 1:20.15.3-1 [135 kB] 3050s Get:205 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 3050s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 3050s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 3050s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB] 3050s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 3050s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 3050s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20250108 [1726 B] 3050s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymatgen-test-files all 2024.10.29-1 [213 MB] 3051s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 3051s Get:214 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 3051s Get:215 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 3051s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pymatgen-doc all 2024.10.29+dfsg1-5 [1129 kB] 3051s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B] 3051s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.2-1 [508 kB] 3051s Get:219 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.13.1-1~exp2 [26.7 kB] 3051s Get:220 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.9-1 [505 kB] 3051s Get:221 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.13.1-1~exp2 [918 B] 3051s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 3051s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [5319 kB] 3051s Get:224 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 3051s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu1 [22.3 MB] 3051s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.5.0-2 [31.7 kB] 3051s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 3051s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 3051s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5 [589 kB] 3051s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB] 3051s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-1 [107 kB] 3051s Get:232 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B] 3051s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5 [9936 B] 3051s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1 [271 kB] 3051s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 3051s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 3051s Get:237 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB] 3051s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B] 3051s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 3051s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-6 [90.7 kB] 3051s Get:241 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB] 3051s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1 [27.4 kB] 3051s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 3051s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 3051s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 3051s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 3051s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 3051s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2 [1755 kB] 3051s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3 [70.4 kB] 3051s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu2 [4697 kB] 3051s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ase all 3.23.0-1ubuntu1 [1754 kB] 3051s Get:252 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB] 3051s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.13.3-1 [136 kB] 3051s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.10.1-5 [42.8 kB] 3051s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1build2 [346 kB] 3051s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB] 3051s Get:257 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 3051s Get:258 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 5.0-1 [10.3 kB] 3051s Get:259 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 3051s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 3051s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 3051s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-frozendict all 2.4.6-1 [13.2 kB] 3051s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.12.1-1 [1677 kB] 3051s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.12.1-1 [7970 B] 3051s Get:265 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 3051s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 3051s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-2 [205 kB] 3051s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 3051s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 3051s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 3051s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [8248 kB] 3052s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8 [3112 kB] 3052s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.27.2-1 [1860 kB] 3052s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB] 3052s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB] 3052s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1 [218 kB] 3052s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 3052s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2025.1.9-1 [40.1 kB] 3052s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 3052s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1build3 [942 kB] 3052s Get:281 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 3052s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB] 3052s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 3052s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-phonopy amd64 2.35.0-1 [325 kB] 3052s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 3052s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 3052s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 3052s Get:288 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB] 3052s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 3052s Get:290 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 3052s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB] 3052s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymatgen amd64 2024.10.29+dfsg1-5 [2670 kB] 3052s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB] 3052s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 3052s Get:295 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 sphinx-common all 8.1.3-5 [663 kB] 3052s Get:296 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 3052s Get:297 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-sphinx all 8.1.3-5 [474 kB] 3052s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 3052s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 3052s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 3052s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpi4py amd64 4.0.1-6ubuntu1 [1098 kB] 3052s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-1.1ubuntu3 [7840 kB] 3053s Fetched 557 MB in 6s (92.7 MB/s) 3053s Selecting previously unselected package python3.12-minimal. 3053s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 3053s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_amd64.deb ... 3053s Unpacking python3.12-minimal (3.12.9-1) ... 3053s Selecting previously unselected package fonts-lato. 3053s Preparing to unpack .../001-fonts-lato_2.015-1_all.deb ... 3053s Unpacking fonts-lato (2.015-1) ... 3053s Selecting previously unselected package sgml-base. 3053s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 3053s Unpacking sgml-base (1.31) ... 3053s Selecting previously unselected package python3.12. 3053s Preparing to unpack .../003-python3.12_3.12.9-1_amd64.deb ... 3053s Unpacking python3.12 (3.12.9-1) ... 3053s Selecting previously unselected package m4. 3053s Preparing to unpack .../004-m4_1.4.19-5_amd64.deb ... 3053s Unpacking m4 (1.4.19-5) ... 3053s Selecting previously unselected package autoconf. 3053s Preparing to unpack .../005-autoconf_2.72-3ubuntu1_all.deb ... 3053s Unpacking autoconf (2.72-3ubuntu1) ... 3053s Selecting previously unselected package autotools-dev. 3053s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 3053s Unpacking autotools-dev (20220109.1) ... 3053s Selecting previously unselected package automake. 3053s Preparing to unpack .../007-automake_1%3a1.17-3ubuntu1_all.deb ... 3053s Unpacking automake (1:1.17-3ubuntu1) ... 3054s Selecting previously unselected package autopoint. 3054s Preparing to unpack .../008-autopoint_0.23.1-1_all.deb ... 3054s Unpacking autopoint (0.23.1-1) ... 3054s Selecting previously unselected package libtcl8.6:amd64. 3054s Preparing to unpack .../009-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 3054s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 3054s Selecting previously unselected package fonts-dejavu-mono. 3054s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 3054s Unpacking fonts-dejavu-mono (2.37-8) ... 3054s Selecting previously unselected package fonts-dejavu-core. 3054s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 3054s Unpacking fonts-dejavu-core (2.37-8) ... 3054s Selecting previously unselected package fontconfig-config. 3054s Preparing to unpack .../012-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 3054s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 3054s Selecting previously unselected package libfontconfig1:amd64. 3054s Preparing to unpack .../013-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 3054s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 3054s Selecting previously unselected package libxrender1:amd64. 3054s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 3054s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 3054s Selecting previously unselected package libxft2:amd64. 3054s Preparing to unpack .../015-libxft2_2.3.6-1build1_amd64.deb ... 3054s Unpacking libxft2:amd64 (2.3.6-1build1) ... 3054s Selecting previously unselected package x11-common. 3054s Preparing to unpack .../016-x11-common_1%3a7.7+23ubuntu3_all.deb ... 3054s Unpacking x11-common (1:7.7+23ubuntu3) ... 3054s Selecting previously unselected package libxss1:amd64. 3054s Preparing to unpack .../017-libxss1_1%3a1.2.3-1build3_amd64.deb ... 3054s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 3054s Selecting previously unselected package libtk8.6:amd64. 3054s Preparing to unpack .../018-libtk8.6_8.6.16-1_amd64.deb ... 3054s Unpacking libtk8.6:amd64 (8.6.16-1) ... 3054s Selecting previously unselected package tk8.6-blt2.5. 3054s Preparing to unpack .../019-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 3054s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 3054s Selecting previously unselected package blt. 3054s Preparing to unpack .../020-blt_2.5.3+dfsg-7build1_amd64.deb ... 3054s Unpacking blt (2.5.3+dfsg-7build1) ... 3054s Selecting previously unselected package libisl23:amd64. 3054s Preparing to unpack .../021-libisl23_0.27-1_amd64.deb ... 3054s Unpacking libisl23:amd64 (0.27-1) ... 3054s Selecting previously unselected package libmpc3:amd64. 3054s Preparing to unpack .../022-libmpc3_1.3.1-1build2_amd64.deb ... 3054s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 3054s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 3054s Preparing to unpack .../023-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 3054s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 3055s Selecting previously unselected package cpp-14. 3055s Preparing to unpack .../024-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 3055s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 3055s Selecting previously unselected package cpp-x86-64-linux-gnu. 3055s Preparing to unpack .../025-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 3055s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 3055s Selecting previously unselected package cpp. 3055s Preparing to unpack .../026-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 3055s Unpacking cpp (4:14.2.0-1ubuntu1) ... 3055s Selecting previously unselected package libcc1-0:amd64. 3055s Preparing to unpack .../027-libcc1-0_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libcc1-0:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libgomp1:amd64. 3055s Preparing to unpack .../028-libgomp1_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libgomp1:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libitm1:amd64. 3055s Preparing to unpack .../029-libitm1_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libitm1:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libasan8:amd64. 3055s Preparing to unpack .../030-libasan8_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libasan8:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package liblsan0:amd64. 3055s Preparing to unpack .../031-liblsan0_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking liblsan0:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libtsan2:amd64. 3055s Preparing to unpack .../032-libtsan2_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libtsan2:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libubsan1:amd64. 3055s Preparing to unpack .../033-libubsan1_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libubsan1:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libhwasan0:amd64. 3055s Preparing to unpack .../034-libhwasan0_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libhwasan0:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libquadmath0:amd64. 3055s Preparing to unpack .../035-libquadmath0_15-20250213-1ubuntu1_amd64.deb ... 3055s Unpacking libquadmath0:amd64 (15-20250213-1ubuntu1) ... 3055s Selecting previously unselected package libgcc-14-dev:amd64. 3055s Preparing to unpack .../036-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 3055s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 3055s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 3055s Preparing to unpack .../037-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 3055s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 3056s Selecting previously unselected package gcc-14. 3056s Preparing to unpack .../038-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 3056s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 3056s Selecting previously unselected package gcc-x86-64-linux-gnu. 3056s Preparing to unpack .../039-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 3056s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 3056s Selecting previously unselected package gcc. 3056s Preparing to unpack .../040-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 3056s Unpacking gcc (4:14.2.0-1ubuntu1) ... 3056s Selecting previously unselected package libstdc++-14-dev:amd64. 3056s Preparing to unpack .../041-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 3056s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 3056s Selecting previously unselected package g++-14-x86-64-linux-gnu. 3056s Preparing to unpack .../042-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 3056s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 3056s Selecting previously unselected package g++-14. 3056s Preparing to unpack .../043-g++-14_14.2.0-17ubuntu3_amd64.deb ... 3056s Unpacking g++-14 (14.2.0-17ubuntu3) ... 3056s Selecting previously unselected package g++-x86-64-linux-gnu. 3056s Preparing to unpack .../044-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 3056s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 3056s Selecting previously unselected package g++. 3056s Preparing to unpack .../045-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 3056s Unpacking g++ (4:14.2.0-1ubuntu1) ... 3056s Selecting previously unselected package build-essential. 3056s Preparing to unpack .../046-build-essential_12.10ubuntu1_amd64.deb ... 3056s Unpacking build-essential (12.10ubuntu1) ... 3056s Selecting previously unselected package cython3. 3056s Preparing to unpack .../047-cython3_3.0.11+dfsg-2ubuntu1_amd64.deb ... 3056s Unpacking cython3 (3.0.11+dfsg-2ubuntu1) ... 3056s Selecting previously unselected package libdebhelper-perl. 3056s Preparing to unpack .../048-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 3056s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 3056s Selecting previously unselected package libtool. 3057s Preparing to unpack .../049-libtool_2.5.4-3build1_all.deb ... 3057s Unpacking libtool (2.5.4-3build1) ... 3057s Selecting previously unselected 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previously unselected package libegl-mesa0:amd64. 3060s Preparing to unpack .../097-libegl-mesa0_24.3.4-3ubuntu1_amd64.deb ... 3060s Unpacking libegl-mesa0:amd64 (24.3.4-3ubuntu1) ... 3060s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 3060s Preparing to unpack .../098-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 3060s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 3060s Selecting previously unselected package libexpat1-dev:amd64. 3060s Preparing to unpack .../099-libexpat1-dev_2.6.4-1_amd64.deb ... 3060s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 3060s Selecting previously unselected package libpsm-infinipath1. 3060s Preparing to unpack .../100-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 3060s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 3060s Selecting previously unselected package libpsm2-2. 3060s Preparing to unpack .../101-libpsm2-2_11.2.185-2.1_amd64.deb ... 3060s Unpacking libpsm2-2 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package libinput10:amd64. 3061s Preparing to unpack .../128-libinput10_1.27.1-1_amd64.deb ... 3061s Unpacking libinput10:amd64 (1.27.1-1) ... 3061s Selecting previously unselected package libjpeg-turbo8:amd64. 3061s Preparing to unpack .../129-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 3061s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 3061s Selecting previously unselected package libjpeg8:amd64. 3061s Preparing to unpack .../130-libjpeg8_8c-2ubuntu11_amd64.deb ... 3061s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 3061s Selecting previously unselected package libjs-bootstrap. 3061s Preparing to unpack .../131-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 3061s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 3061s Selecting previously unselected package libjs-jquery. 3061s Preparing to unpack .../132-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 3061s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 3061s Selecting previously unselected package libjs-jquery-ui. 3061s Preparing to unpack .../133-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 3061s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 3061s Selecting previously unselected package libjs-underscore. 3061s Preparing to unpack .../134-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 3061s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 3061s Selecting previously unselected package libjs-sphinxdoc. 3061s Preparing to unpack .../135-libjs-sphinxdoc_8.1.3-5_all.deb ... 3061s Unpacking libjs-sphinxdoc (8.1.3-5) ... 3061s Selecting previously unselected package libjson-perl. 3061s Preparing to unpack .../136-libjson-perl_4.10000-1_all.deb ... 3061s Unpacking libjson-perl (4.10000-1) ... 3061s Selecting previously unselected package libjsoncpp26:amd64. 3061s Preparing to unpack .../137-libjsoncpp26_1.9.6-3_amd64.deb ... 3061s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 3062s Selecting previously unselected package liblapack3:amd64. 3062s Preparing to unpack .../138-liblapack3_3.12.1-2_amd64.deb ... 3062s 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package libxkbcommon-x11-0:amd64. 3064s Preparing to unpack .../185-libxkbcommon-x11-0_1.7.0-2_amd64.deb ... 3064s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ... 3064s Selecting previously unselected package libqt5gui5t64:amd64. 3064s Preparing to unpack .../186-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 3064s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 3064s Selecting previously unselected package libqt5widgets5t64:amd64. 3064s Preparing to unpack .../187-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 3064s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 3064s Selecting previously unselected package libraqm0:amd64. 3064s Preparing to unpack .../188-libraqm0_0.10.2-1_amd64.deb ... 3064s Unpacking libraqm0:amd64 (0.10.2-1) ... 3064s Selecting previously unselected package libsymspg2:amd64. 3064s Preparing to unpack .../189-libsymspg2_2.5.0-2_amd64.deb ... 3064s Unpacking libsymspg2:amd64 (2.5.0-2) ... 3064s Selecting previously unselected 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previously unselected package pymatgen-test-files. 3066s Preparing to unpack .../211-pymatgen-test-files_2024.10.29-1_all.deb ... 3066s Unpacking pymatgen-test-files (2024.10.29-1) ... 3068s Selecting previously unselected package python-matplotlib-data. 3068s Preparing to unpack .../212-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 3068s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 3068s Selecting previously unselected package libjs-mathjax. 3068s Preparing to unpack .../213-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 3068s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 3069s Selecting previously unselected package sphinx-rtd-theme-common. 3069s Preparing to unpack .../214-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 3069s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 3069s Selecting previously unselected package python-pymatgen-doc. 3069s Preparing to unpack .../215-python-pymatgen-doc_2024.10.29+dfsg1-5_all.deb ... 3069s Unpacking python-pymatgen-doc 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python3-tz. 3071s Preparing to unpack .../237-python3-tz_2025.1-3_all.deb ... 3071s Unpacking python3-tz (2025.1-3) ... 3071s Selecting previously unselected package python3-platformdirs. 3071s Preparing to unpack .../238-python3-platformdirs_4.3.6-1_all.deb ... 3071s Unpacking python3-platformdirs (4.3.6-1) ... 3071s Selecting previously unselected package python3-fs. 3071s Preparing to unpack .../239-python3-fs_2.4.16-6_all.deb ... 3071s Unpacking python3-fs (2.4.16-6) ... 3071s Selecting previously unselected package python3-lxml:amd64. 3071s Preparing to unpack .../240-python3-lxml_5.3.1-1_amd64.deb ... 3071s Unpacking python3-lxml:amd64 (5.3.1-1) ... 3071s Selecting previously unselected package python3-lz4. 3071s Preparing to unpack .../241-python3-lz4_4.4.0+dfsg-1_amd64.deb ... 3071s Unpacking python3-lz4 (4.4.0+dfsg-1) ... 3071s Selecting previously unselected package python3-mpmath. 3071s Preparing to unpack .../242-python3-mpmath_1.3.0-1_all.deb ... 3071s Unpacking python3-mpmath (1.3.0-1) ... 3071s Selecting previously unselected package python3-sympy. 3071s Preparing to unpack .../243-python3-sympy_1.13.3-1_all.deb ... 3071s Unpacking python3-sympy (1.13.3-1) ... 3072s Selecting previously unselected package python3-ufolib2. 3072s Preparing to unpack .../244-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 3072s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 3072s Selecting previously unselected package python3-unicodedata2. 3072s Preparing to unpack .../245-python3-unicodedata2_15.1.0+ds-1build2_amd64.deb ... 3072s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 3072s Selecting previously unselected package unicode-data. 3072s Preparing to unpack .../246-unicode-data_15.1.0-1_all.deb ... 3072s Unpacking unicode-data (15.1.0-1) ... 3072s Selecting previously unselected package python3-fonttools. 3072s Preparing to unpack .../247-python3-fonttools_4.55.3-2_amd64.deb ... 3072s Unpacking python3-fonttools (4.55.3-2) ... 3072s Selecting previously unselected package python3-kiwisolver. 3072s Preparing to unpack .../248-python3-kiwisolver_1.4.7-3_amd64.deb ... 3072s Unpacking python3-kiwisolver (1.4.7-3) ... 3072s Selecting previously unselected package python3-matplotlib. 3072s Preparing to unpack .../249-python3-matplotlib_3.8.3-3ubuntu2_amd64.deb ... 3072s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ... 3072s Selecting previously unselected package python3-ase. 3072s Preparing to unpack .../250-python3-ase_3.23.0-1ubuntu1_all.deb ... 3072s Unpacking python3-ase (3.23.0-1ubuntu1) ... 3072s Selecting previously unselected package python3-soupsieve. 3072s Preparing to unpack .../251-python3-soupsieve_2.6-1_all.deb ... 3072s Unpacking python3-soupsieve (2.6-1) ... 3073s Selecting previously unselected package python3-bs4. 3073s Preparing to unpack .../252-python3-bs4_4.13.3-1_all.deb ... 3073s Unpacking python3-bs4 (4.13.3-1) ... 3073s Selecting previously unselected package python3-bson. 3073s Preparing to unpack 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python3-docutils (0.21.2+dfsg-2) ... 3073s Selecting previously unselected package python3-email-validator. 3073s Preparing to unpack .../259-python3-email-validator_2.2.0-1_all.deb ... 3073s Unpacking python3-email-validator (2.2.0-1) ... 3073s Selecting previously unselected package python3-fastjsonschema. 3073s Preparing to unpack .../260-python3-fastjsonschema_2.21.1-1_all.deb ... 3073s Unpacking python3-fastjsonschema (2.21.1-1) ... 3073s Selecting previously unselected package python3-frozendict. 3073s Preparing to unpack .../261-python3-frozendict_2.4.6-1_all.deb ... 3073s Unpacking python3-frozendict (2.4.6-1) ... 3073s Selecting previously unselected package python3-h5py-serial. 3073s Preparing to unpack .../262-python3-h5py-serial_3.12.1-1_amd64.deb ... 3073s Unpacking python3-h5py-serial (3.12.1-1) ... 3073s Selecting previously unselected package python3-h5py. 3073s Preparing to unpack .../263-python3-h5py_3.12.1-1_all.deb ... 3073s Unpacking python3-h5py (3.12.1-1) ... 3073s Selecting previously unselected package python3-imagesize. 3073s Preparing to unpack .../264-python3-imagesize_1.4.1-1_all.deb ... 3073s Unpacking python3-imagesize (1.4.1-1) ... 3073s Selecting previously unselected package python3-iniconfig. 3073s Preparing to unpack .../265-python3-iniconfig_1.1.1-2_all.deb ... 3073s Unpacking python3-iniconfig (1.1.1-2) ... 3073s Selecting previously unselected package python3-joblib. 3073s Preparing to unpack .../266-python3-joblib_1.4.2-2_all.deb ... 3073s Unpacking python3-joblib (1.4.2-2) ... 3073s Selecting previously unselected package python3-traitlets. 3073s Preparing to unpack .../267-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 3073s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 3073s Selecting previously unselected package python3-jupyter-core. 3073s Preparing to unpack .../268-python3-jupyter-core_5.7.2-5_all.deb ... 3073s Unpacking python3-jupyter-core (5.7.2-5) ... 3073s Selecting previously unselected package python3-latexcodec. 3074s Preparing to unpack .../269-python3-latexcodec_3.0.0-1_all.deb ... 3074s Unpacking python3-latexcodec (3.0.0-1) ... 3074s Selecting previously unselected package python3-pandas-lib:amd64. 3074s Preparing to unpack .../270-python3-pandas-lib_2.2.3+dfsg-8_amd64.deb ... 3074s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... 3074s Selecting previously unselected package python3-pandas. 3074s Preparing to unpack .../271-python3-pandas_2.2.3+dfsg-8_all.deb ... 3074s Unpacking python3-pandas (2.2.3+dfsg-8) ... 3074s Selecting previously unselected package python3-pydantic-core. 3074s Preparing to unpack .../272-python3-pydantic-core_2.27.2-1_amd64.deb ... 3074s Unpacking python3-pydantic-core (2.27.2-1) ... 3074s Selecting previously unselected package python3-pydantic. 3074s Preparing to unpack .../273-python3-pydantic_2.10.6-1_amd64.deb ... 3074s Unpacking python3-pydantic (2.10.6-1) ... 3074s Selecting previously unselected package python3-tqdm. 3074s 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3086s Setting up libxcb-xkb1:amd64 (1.17.0-2) ... 3086s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 3086s Setting up python3-fs (2.4.16-6) ... 3086s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 3086s Setting up libxcb-present0:amd64 (1.17.0-2) ... 3086s Setting up unicode-data (15.1.0-1) ... 3086s Setting up libsymspg2:amd64 (2.5.0-2) ... 3086s Setting up python3-six (1.17.0-1) ... 3087s Setting up python3-bson (4.10.1-5) ... 3087s Setting up python3-palettable (3.3.3-1) ... 3087s Setting up python3-roman (5.0-1) ... 3087s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-5) ... 3087s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 3087s Setting up python3-decorator (5.1.1-5) ... 3088s Setting up autotools-dev (20220109.1) ... 3088s Setting up libblas3:amd64 (3.12.1-2) ... 3088s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 3088s Setting up python3-packaging (24.2-1) ... 3088s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ... 3088s Setting up libmunge2:amd64 (0.5.16-1) ... 3088s Setting up libllvm17t64:amd64 (1:17.0.6-21) ... 3088s Setting up libexpat1-dev:amd64 (2.6.4-1) ... 3088s Setting up python3-pyproject-hooks (1.2.0-1) ... 3088s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 3088s Setting up python3-snowballstemmer (2.2.0-4build1) ... 3088s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.1ubuntu1) ... 3088s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 3088s Setting up python3-brotli (1.1.0-2build3) ... 3089s Setting up liblzf1:amd64 (3.6-4) ... 3089s Setting up libquadmath0:amd64 (15-20250213-1ubuntu1) ... 3089s Setting up python3-cycler (0.12.1-1) ... 3089s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 3089s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ... 3089s Setting up fonts-dejavu-mono (2.37-8) ... 3089s Setting up python3-kiwisolver (1.4.7-3) ... 3089s Setting up libhwloc15:amd64 (2.12.0-1) ... 3089s Setting up libmpc3:amd64 (1.3.1-1build2) ... 3089s Setting up cython3 (3.0.11+dfsg-2ubuntu1) ... 3090s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 3090s Setting up autopoint (0.23.1-1) ... 3090s Setting up fonts-dejavu-core (2.37-8) ... 3090s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 3090s Setting up libglapi-mesa:amd64 (24.3.4-3ubuntu1) ... 3090s Setting up python3-toml (0.10.2-1) ... 3091s Setting up python3-installer (0.7.0+dfsg1-3) ... 3091s Setting up libgfortran5:amd64 (15-20250213-1ubuntu1) ... 3091s Setting up libvulkan1:amd64 (1.4.304.0-1) ... 3091s Setting up autoconf (2.72-3ubuntu1) ... 3091s Setting up python3-pluggy (1.5.0-1) ... 3091s Setting up libwebp7:amd64 (1.5.0-0.1) ... 3091s Setting up python3-pybtex (0.24.0-4) ... 3091s Setting up libubsan1:amd64 (15-20250213-1ubuntu1) ... 3091s Setting up python3-fastjsonschema (2.21.1-1) ... 3091s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 3092s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 3092s Setting up dwz (0.15-1build6) ... 3092s Setting up libmtdev1t64:amd64 (1.1.7-1) ... 3092s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 3092s Setting up libxshmfence1:amd64 (1.3-1build5) ... 3092s Setting up libhwasan0:amd64 (15-20250213-1ubuntu1) ... 3092s Setting up python3-dnspython (2.7.0-1ubuntu1) ... 3092s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 3092s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 3092s Setting up libasan8:amd64 (15-20250213-1ubuntu1) ... 3092s Setting up libjson-perl (4.10000-1) ... 3092s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 3092s Setting up libpsm2-2 (11.2.185-2.1) ... 3092s Setting up openmpi-common (5.0.7-1) ... 3092s Setting up debugedit (1:5.1-2) ... 3092s Setting up libmd4c0:amd64 (0.5.2-2) ... 3092s Setting up librdmacm1t64:amd64 (55.0-1ubuntu1) ... 3092s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 3092s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 3092s Setting up python3-dateutil (2.9.0-3) ... 3093s Setting up python3-email-validator (2.2.0-1) ... 3093s Setting up sgml-base (1.31) ... 3093s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 3093s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 3093s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 3093s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 3093s Setting up libtsan2:amd64 (15-20250213-1ubuntu1) ... 3093s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 3093s Setting up python3-mpmath (1.3.0-1) ... 3094s Setting up libisl23:amd64 (0.27-1) ... 3094s Setting up python3-build (1.2.2-1) ... 3094s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ... 3094s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 3094s Setting up libinchi1.07 (1.07.2+dfsg-1) ... 3094s Setting up python3-soupsieve (2.6-1) ... 3094s Setting up pymatgen-test-files (2024.10.29-1) ... 3094s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 3094s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 3094s Setting up libcc1-0:amd64 (15-20250213-1ubuntu1) ... 3094s Setting up python3-jupyter-core (5.7.2-5) ... 3094s Setting up liblsan0:amd64 (15-20250213-1ubuntu1) ... 3094s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 3094s Setting up libsz2:amd64 (1.1.3-1) ... 3094s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 3094s Setting up libitm1:amd64 (15-20250213-1ubuntu1) ... 3094s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 3094s Setting up python3-imagesize (1.4.1-1) ... 3095s Setting up libwacom-common (2.14.0-1) ... 3095s Setting up libwayland-client0:amd64 (1.23.1-3) ... 3095s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 3095s Setting up automake (1:1.17-3ubuntu1) ... 3095s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 3095s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 3095s Setting up libfabric1:amd64 (1.17.0-3.1) ... 3095s Setting up python3-sympy (1.13.3-1) ... 3106s Setting up libice6:amd64 (2:1.1.1-1) ... 3106s Setting up mesa-libgallium:amd64 (24.3.4-3ubuntu1) ... 3106s Setting up liblapack3:amd64 (3.12.1-2) ... 3106s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 3106s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 3106s Setting up gettext (0.23.1-1) ... 3106s Setting up libgbm1:amd64 (24.3.4-3ubuntu1) ... 3106s Setting up libwacom9:amd64 (2.14.0-1) ... 3106s Setting up pybuild-plugin-pyproject (6.20250108) ... 3106s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 3106s Setting up python3-pytest (8.3.4-1) ... 3106s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 3106s Setting up libgl1-mesa-dri:amd64 (24.3.4-3ubuntu1) ... 3106s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 3106s Setting up libpython3.12-dev:amd64 (3.12.9-1) ... 3106s Setting up python3-nbformat (5.9.1-1) ... 3107s Setting up libhwloc-plugins:amd64 (2.12.0-1) ... 3107s Setting up python3-bs4 (4.13.3-1) ... 3107s Setting up libinput-bin (1.27.1-1) ... 3107s Setting up libtbbbind-2-5:amd64 (2022.0.0-1) ... 3107s Setting up intltool-debian (0.35.0+20060710.6) ... 3107s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 3107s Setting up libegl-mesa0:amd64 (24.3.4-3ubuntu1) ... 3107s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 3107s Setting up packmol (1:20.15.3-1) ... 3107s Setting up python3-pydantic (2.10.6-1) ... 3108s Setting up libraqm0:amd64 (0.10.2-1) ... 3108s Setting up libpython3.13-dev:amd64 (3.13.2-1) ... 3108s Setting up python3.12-dev (3.12.9-1) ... 3108s Setting up cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 3108s Setting up libpmix2t64:amd64 (5.0.6-3) ... 3108s Setting up python3-plotly (5.20.0+dfsg-1) ... 3119s Setting up python3-numpy (1:1.26.4+ds-13) ... 3123s Setting up libjs-sphinxdoc (8.1.3-5) ... 3123s Setting up cpp-14 (14.2.0-17ubuntu3) ... 3123s Setting up dh-strip-nondeterminism (1.14.1-2) ... 3123s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 3123s Setting up python3-lxml:amd64 (5.3.1-1) ... 3123s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 3123s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 3123s Setting up xml-core (0.19) ... 3123s Setting up libegl1:amd64 (1.7.0-1build1) ... 3123s Setting up python3-contourpy (1.3.1-1) ... 3123s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 3123s Setting up libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 3123s Setting up python3-spglib (2.5.0-2) ... 3123s Setting up libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 3123s Setting up libsm6:amd64 (2:1.2.4-1) ... 3123s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 3123s Setting up python3-uncertainties (3.2.2-1) ... 3124s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 3124s Setting up libinput10:amd64 (1.27.1-1) ... 3124s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 3124s Setting up fontconfig (2.15.0-2ubuntu1) ... 3126s Regenerating fonts cache... done. 3126s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu2) ... 3126s Setting up libxft2:amd64 (2.3.6-1build1) ... 3126s Setting up libglx-mesa0:amd64 (24.3.4-3ubuntu1) ... 3126s Setting up python3-scipy (1.14.1-4ubuntu1) ... 3131s Setting up libpython3-dev:amd64 (3.13.1-1~exp2) ... 3131s Setting up libglx0:amd64 (1.7.0-1build1) ... 3131s Setting up libproj25:amd64 (9.5.1-1) ... 3131s Setting up python3.13-dev (3.13.2-1) ... 3131s Setting up po-debconf (1.0.21+nmu1) ... 3131s Setting up libtk8.6:amd64 (8.6.16-1) ... 3131s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... 3131s Setting up python3.12-tk (3.12.9-1) ... 3131s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 3131s Setting up python3-h5py-serial (3.12.1-1) ... 3132s Setting up libtbb12:amd64 (2022.0.0-1) ... 3132s Setting up python-pymatgen-doc (2024.10.29+dfsg1-5) ... 3132s Setting up libcairo2:amd64 (1.18.2-2) ... 3132s Setting up python3.13-tk (3.13.2-1) ... 3132s Setting up python3-pil:amd64 (11.1.0-5) ... 3132s Setting up libgl1:amd64 (1.7.0-1build1) ... 3132s Setting up python3-pandas (2.2.3+dfsg-8) ... 3141s Setting up libamdhip64-5 (5.7.1-5) ... 3141s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-5) ... 3141s Setting up libpython3-all-dev:amd64 (3.13.1-1~exp2) ... 3141s Setting up sphinx-common (8.1.3-5) ... 3141s Setting up python3-dev (3.13.1-1~exp2) ... 3141s Setting up python3-h5py (3.12.1-1) ... 3141s Setting up python3-cftime (1.6.4-1build2) ... 3141s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 3141s Setting up cpp (4:14.2.0-1ubuntu1) ... 3141s Setting up python3-monty (2025.1.9-1) ... 3141s Setting up gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 3141s Setting up python3-netcdf4 (1.7.2-1build3) ... 3141s Setting up python3-all-dev (3.13.1-1~exp2) ... 3141s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 3141s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 3141s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 3141s Setting up blt (2.5.3+dfsg-7build1) ... 3141s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 3141s Setting up python3-tk:amd64 (3.13.1-1) ... 3141s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 3141s Setting up gcc-14 (14.2.0-17ubuntu3) ... 3141s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 3141s Setting up python3-pil.imagetk:amd64 (11.1.0-5) ... 3142s Setting up g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 3142s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 3142s Setting up g++-14 (14.2.0-17ubuntu3) ... 3142s Setting up libopenmpi40:amd64 (5.0.7-1) ... 3142s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 3142s Setting up libtool (2.5.4-3build1) ... 3142s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 3142s Setting up gcc (4:14.2.0-1ubuntu1) ... 3142s Setting up dh-autoreconf (20) ... 3142s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-1.1ubuntu3) ... 3142s Setting up g++ (4:14.2.0-1ubuntu1) ... 3142s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 3142s Setting up build-essential (12.10ubuntu1) ... 3142s Setting up openmpi-bin (5.0.7-1) ... 3142s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 3142s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 3142s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 3142s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-1.1ubuntu3) ... 3142s Setting up mpi-default-bin (1.18) ... 3142s Setting up debhelper (13.24.1ubuntu2) ... 3142s Setting up python3-mpi4py (4.0.1-6ubuntu1) ... 3142s Setting up python3-vtk9 (9.3.0+dfsg1-1.1ubuntu3) ... 3142s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 3142s patn = re.compile (" \S") 3142s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 3142s patn = re.compile (" \S") 3142s Setting up python3-fonttools (4.55.3-2) ... 3144s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 3144s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 3147s Setting up python3-ase (3.23.0-1ubuntu1) ... 3150s Setting up python3-phonopy (2.35.0-1) ... 3151s Setting up python3-pymatgen (2024.10.29+dfsg1-5) ... 3153s Processing triggers for libc-bin (2.40-4ubuntu1) ... 3153s Processing triggers for systemd (257.2-3ubuntu1) ... 3153s Processing triggers for man-db (2.13.0-1) ... 3155s Processing triggers for udev (257.2-3ubuntu1) ... 3155s Processing triggers for install-info (7.1.1-1) ... 3155s Processing triggers for sgml-base (1.31) ... 3155s Setting up docutils-common (0.21.2+dfsg-2) ... 3155s Processing triggers for sgml-base (1.31) ... 3155s Setting up python3-docutils (0.21.2+dfsg-2) ... 3156s Setting up python3-sphinx (8.1.3-5) ... 3157s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 3158s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 3160s autopkgtest [21:31:57]: test test-pymatgen-net: [----------------------- 3160s running network tests with NET_TEST_LIST=test_get_structure_by_id 3161s ============================= test session starts ============================== 3161s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 3161s cachedir: .pytest_cache 3161s rootdir: /tmp/autopkgtest.zx9QEQ/build.V9t/src 3161s configfile: pyproject.toml 3161s plugins: typeguard-4.4.1 3182s collecting ... collected 2935 items / 2934 deselected / 8 skipped / 1 selected 3182s 3182s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED [100%] 3182s 3182s ============================= slowest 30 durations ============================= 3182s 0.18s call tests/ext/test_cod.py::TestCOD::test_get_structure_by_id 3182s 3182s (2 durations < 0.005s hidden. Use -vv to show these durations.) 3182s =========================== short test summary info ============================ 3182s SKIPPED [1] tests/analysis/test_functional_groups.py:16: could not import 'openbabel': No module named '_openbabel' 3182s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 3182s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 3182s SKIPPED [1] tests/io/test_babel.py:17: could not import 'openbabel.pybel': No module named '_openbabel' 3182s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 3182s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml' 3182s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 3182s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 3182s ================ 1 passed, 8 skipped, 2934 deselected in 21.20s ================ 3183s ============================= test session starts ============================== 3183s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 3183s cachedir: .pytest_cache 3183s rootdir: /tmp/autopkgtest.zx9QEQ/build.V9t/src 3183s configfile: pyproject.toml 3183s plugins: typeguard-4.4.1 3201s collecting ... collected 2953 items / 2952 deselected / 6 skipped / 1 selected 3201s 3201s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED [100%] 3201s 3201s ============================= slowest 30 durations ============================= 3201s 0.24s call tests/ext/test_cod.py::TestCOD::test_get_structure_by_id 3201s 3201s (2 durations < 0.005s hidden. Use -vv to show these durations.) 3201s =========================== short test summary info ============================ 3201s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 3201s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 3201s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 3201s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml' 3201s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 3201s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 3201s ================ 1 passed, 6 skipped, 2952 deselected in 17.98s ================ 3203s autopkgtest [21:32:40]: test test-pymatgen-net: -----------------------] 3203s test-pymatgen-net PASS 3203s autopkgtest [21:32:40]: test test-pymatgen-net: - - - - - - - - - - results - - - - - - - - - - 3203s autopkgtest [21:32:40]: @@@@@@@@@@@@@@@@@@@@ summary 3203s test-pymatgen PASS 3203s test-pymatgen-net PASS 3218s nova [W] Skipping flock for amd64 3218s Creating nova instance adt-plucky-amd64-pymatgen-20250222-203917-juju-7f2275-prod-proposed-migration-environment-20-44f8f2c0-435d-449e-91d5-6addc198027d from image adt/ubuntu-plucky-amd64-server-20250222.img (UUID aba6fb27-d21c-4f55-a27f-5f98cacbaba1)... 3218s nova [W] Timed out waiting for 677f15b4-e042-4dcf-be7d-1fbee6780d74 to get deleted. 3218s nova [W] Skipping flock for amd64 3218s Creating nova instance adt-plucky-amd64-pymatgen-20250222-203917-juju-7f2275-prod-proposed-migration-environment-20-44f8f2c0-435d-449e-91d5-6addc198027d from image adt/ubuntu-plucky-amd64-server-20250222.img (UUID aba6fb27-d21c-4f55-a27f-5f98cacbaba1)... 3218s nova [W] Timed out waiting for bb596610-4134-45cb-b836-8048dc3ac520 to get deleted.