0s autopkgtest [14:13:58]: starting date and time: 2025-02-14 14:13:58+0000
  0s autopkgtest [14:13:58]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [14:13:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3_vidsw8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pymatgen --apt-upgrade pymatgen --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pymatgen/2024.10.29+dfsg1-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-16.secgroup --name adt-plucky-amd64-pymatgen-20250214-141357-juju-7f2275-prod-proposed-migration-environment-2-103169f6-efd4-4367-a5c8-8085d9bb2c7d --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 55s autopkgtest [14:14:53]: testbed dpkg architecture: amd64
 55s autopkgtest [14:14:53]: testbed apt version: 2.9.28
 56s autopkgtest [14:14:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 56s autopkgtest [14:14:54]: testbed release detected to be: None
 57s autopkgtest [14:14:55]: updating testbed package index (apt update)
 57s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
 57s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 58s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 58s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [60.6 kB]
 58s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [811 kB]
 58s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [18.9 kB]
 58s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
 58s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [66.0 kB]
 58s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.8 kB]
 58s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B]
 58s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B]
 58s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [286 kB]
 58s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [831 kB]
 59s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3520 B]
 59s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [12.2 kB]
 59s Fetched 2299 kB in 2s (1232 kB/s)
 60s Reading package lists...
 60s Reading package lists...
 61s Building dependency tree...
 61s Reading state information...
 61s Calculating upgrade...
 61s The following packages will be upgraded:
 61s   dracut-install libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3
 61s   libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3
 61s   libblockdev-utils3 libblockdev3 libffi8 lshw python3-certifi
 61s 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 61s Need to get 563 kB of archives.
 61s After this operation, 1024 B of additional disk space will be used.
 61s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libffi8 amd64 3.4.7-1 [26.2 kB]
 61s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 lshw amd64 02.19.git.2021.06.19.996aaad9c7-2.1ubuntu1 [296 kB]
 62s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 dracut-install amd64 106-2ubuntu1 [36.9 kB]
 62s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-utils3 amd64 3.3.0-1 [19.9 kB]
 62s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-crypto3 amd64 3.3.0-1 [23.7 kB]
 62s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-fs3 amd64 3.3.0-1 [38.5 kB]
 62s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-loop3 amd64 3.3.0-1 [7260 B]
 62s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-mdraid3 amd64 3.3.0-1 [12.7 kB]
 62s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-nvme3 amd64 3.3.0-1 [18.6 kB]
 62s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-part3 amd64 3.3.0-1 [16.1 kB]
 62s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev-swap3 amd64 3.3.0-1 [8090 B]
 62s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libblockdev3 amd64 3.3.0-1 [49.1 kB]
 62s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-certifi all 2025.1.31+ds-1 [9816 B]
 62s Fetched 563 kB in 1s (872 kB/s)
 63s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108914 files and directories currently installed.)
 63s Preparing to unpack .../00-libffi8_3.4.7-1_amd64.deb ...
 63s Unpacking libffi8:amd64 (3.4.7-1) over (3.4.6-1build1) ...
 63s Preparing to unpack .../01-lshw_02.19.git.2021.06.19.996aaad9c7-2.1ubuntu1_amd64.deb ...
 63s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2.1ubuntu1) over (02.19.git.2021.06.19.996aaad9c7-2ubuntu2) ...
 63s Preparing to unpack .../02-dracut-install_106-2ubuntu1_amd64.deb ...
 63s Unpacking dracut-install (106-2ubuntu1) over (105-2ubuntu5) ...
 63s Preparing to unpack .../03-libblockdev-utils3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-utils3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../04-libblockdev-crypto3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-crypto3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../05-libblockdev-fs3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-fs3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../06-libblockdev-loop3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-loop3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../07-libblockdev-mdraid3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-mdraid3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../08-libblockdev-nvme3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-nvme3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../09-libblockdev-part3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-part3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../10-libblockdev-swap3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev-swap3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../11-libblockdev3_3.3.0-1_amd64.deb ...
 63s Unpacking libblockdev3:amd64 (3.3.0-1) over (3.2.1-1) ...
 63s Preparing to unpack .../12-python3-certifi_2025.1.31+ds-1_all.deb ...
 63s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
 63s   for fn in glob1(directory, "%s.*" % fname):
 63s Unpacking python3-certifi (2025.1.31+ds-1) over (2024.12.14+ds-1) ...
 63s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2.1ubuntu1) ...
 63s Setting up python3-certifi (2025.1.31+ds-1) ...
 63s Setting up libblockdev-utils3:amd64 (3.3.0-1) ...
 63s Setting up libblockdev-nvme3:amd64 (3.3.0-1) ...
 63s Setting up libffi8:amd64 (3.4.7-1) ...
 63s Setting up libblockdev-fs3:amd64 (3.3.0-1) ...
 63s Setting up dracut-install (106-2ubuntu1) ...
 63s Setting up libblockdev-mdraid3:amd64 (3.3.0-1) ...
 63s Setting up libblockdev-crypto3:amd64 (3.3.0-1) ...
 63s Setting up libblockdev-swap3:amd64 (3.3.0-1) ...
 63s Setting up libblockdev-loop3:amd64 (3.3.0-1) ...
 63s Setting up libblockdev3:amd64 (3.3.0-1) ...
 63s Setting up libblockdev-part3:amd64 (3.3.0-1) ...
 63s Processing triggers for man-db (2.13.0-1) ...
 64s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 64s Reading package lists...
 65s Building dependency tree...
 65s Reading state information...
 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 65s autopkgtest [14:15:03]: upgrading testbed (apt dist-upgrade and autopurge)
 65s Reading package lists...
 66s Building dependency tree...
 66s Reading state information...
 66s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 66s Starting 2 pkgProblemResolver with broken count: 0
 66s Done
 66s Entering ResolveByKeep
 67s 
 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 67s Reading package lists...
 67s Building dependency tree...
 67s Reading state information...
 68s Starting pkgProblemResolver with broken count: 0
 68s Starting 2 pkgProblemResolver with broken count: 0
 68s Done
 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 71s autopkgtest [14:15:09]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 16:02:16 UTC 2025
 71s autopkgtest [14:15:09]: @@@@@@@@@@@@@@@@@@@@ apt-source pymatgen
 76s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe pymatgen 2024.10.29+dfsg1-5 (dsc) [3185 B]
 76s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe pymatgen 2024.10.29+dfsg1-5 (tar) [9757 kB]
 76s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe pymatgen 2024.10.29+dfsg1-5 (diff) [18.7 kB]
 76s gpgv: Signature made Fri Feb 14 00:34:02 2025 UTC
 76s gpgv:                using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA
 76s gpgv: Can't check signature: No public key
 76s dpkg-source: warning: cannot verify inline signature for ./pymatgen_2024.10.29+dfsg1-5.dsc: no acceptable signature found
 77s dpkg-source: warning: diff 'src/debian/patches/32bit_indexing_PR4194.patch' patches file src/src/pymatgen/analysis/chemenv/coordination_environments/coordination_geometry_finder.py more than once
 77s autopkgtest [14:15:15]: testing package pymatgen version 2024.10.29+dfsg1-5
 77s autopkgtest [14:15:15]: build not needed
 81s autopkgtest [14:15:19]: test test-pymatgen: preparing testbed
 81s Reading package lists...
 81s Building dependency tree...
 81s Reading state information...
 82s Starting pkgProblemResolver with broken count: 0
 82s Starting 2 pkgProblemResolver with broken count: 0
 82s Done
 82s The following NEW packages will be installed:
 82s   autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
 82s   cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit
 82s   dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz
 82s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 82s   fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx
 82s   fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
 82s   gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian
 82s   libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3
 82s   libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0
 82s   libdouble-conversion3 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1
 82s   libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1
 82s   libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev
 82s   libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2
 82s   libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b
 82s   libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0
 82s   libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libimagequant0
 82s   libinchi1.07 libinput-bin libinput10 libisl23 libitm1 libjbig0
 82s   libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui
 82s   libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26
 82s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 liblsan0 liblzf1
 82s   libmaeparser1 libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnetcdf19t64 libogg0
 82s   libopenbabel7 libopengl0 libopenjp2-7 libopenmpi40 libpciaccess0
 82s   libpcre2-16-0 libpixman-1-0 libpmix2t64 libproj25 libpsm-infinipath1
 82s   libpsm2-2 libpython3-all-dev libpython3-dev libpython3.12-dev
 82s   libpython3.13-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64
 82s   libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0 librdmacm1t64
 82s   libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2 libtbb12
 82s   libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6
 82s   libtk8.6 libtool libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt
 82s   libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0
 82s   libwebp7 libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0
 82s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
 82s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
 82s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
 82s   libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1
 82s   libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1
 82s   openmpi-bin openmpi-common packmol po-debconf proj-data
 82s   pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data
 82s   python-pymatgen-doc python3-alabaster python3-all python3-all-dev
 82s   python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson
 82s   python3-build python3-cftime python3-contourpy python3-cycler
 82s   python3-dateutil python3-decorator python3-defusedxml python3-dev
 82s   python3-dnspython python3-docutils python3-email-validator
 82s   python3-fastjsonschema python3-fonttools python3-frozendict python3-fs
 82s   python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig
 82s   python3-installer python3-joblib python3-jupyter-core python3-kiwisolver
 82s   python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty
 82s   python3-mpi4py python3-mpmath python3-nbformat python3-netcdf4
 82s   python3-networkx python3-numpy python3-openbabel python3-packaging
 82s   python3-palettable python3-pandas python3-pandas-lib python3-phonopy
 82s   python3-pil python3-pil.imagetk python3-platformdirs python3-plotly
 82s   python3-pluggy python3-pybtex python3-pydantic python3-pydantic-core
 82s   python3-pymatgen python3-pyproject-hooks python3-pytest python3-pytz
 82s   python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy
 82s   python3-six python3-snowballstemmer python3-soupsieve python3-spglib
 82s   python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery
 82s   python3-sympy python3-tabulate python3-tenacity python3-tk python3-toml
 82s   python3-tqdm python3-traitlets python3-tz python3-ufolib2
 82s   python3-uncertainties python3-unicodedata2 python3-vtk9 python3-wheel
 82s   python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-dev
 82s   python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5
 82s   unicode-data x11-common xml-core zlib1g-dev
 82s 0 upgraded, 301 newly installed, 0 to remove and 0 not upgraded.
 82s Need to get 556 MB of archives.
 82s After this operation, 2188 MB of additional disk space will be used.
 82s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB]
 83s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB]
 84s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB]
 84s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB]
 84s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-5 [263 kB]
 84s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB]
 84s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB]
 84s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3 [572 kB]
 84s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB]
 84s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
 84s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
 84s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
 84s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB]
 84s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB]
 85s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
 85s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
 85s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
 85s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
 85s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
 85s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB]
 85s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B]
 85s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
 85s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
 85s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-16ubuntu1 [11.9 MB]
 86s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-16ubuntu1 [1032 B]
 86s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
 86s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
 86s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-16ubuntu1 [47.6 kB]
 86s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-16ubuntu1 [148 kB]
 86s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-16ubuntu1 [29.0 kB]
 86s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-16ubuntu1 [2998 kB]
 86s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-16ubuntu1 [1317 kB]
 86s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-16ubuntu1 [2733 kB]
 86s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-16ubuntu1 [1177 kB]
 86s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-16ubuntu1 [1634 kB]
 86s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-16ubuntu1 [153 kB]
 87s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-16ubuntu1 [2814 kB]
 87s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-16ubuntu1 [23.3 MB]
 89s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-16ubuntu1 [535 kB]
 89s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
 89s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
 89s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-16ubuntu1 [2507 kB]
 89s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-16ubuntu1 [13.4 MB]
 90s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-16ubuntu1 [21.5 kB]
 90s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
 90s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
 90s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
 90s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu1 [3370 kB]
 91s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
 91s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-3build1 [168 kB]
 91s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB]
 91s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
 91s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
 91s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B]
 91s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB]
 91s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB]
 91s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB]
 91s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
 91s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
 91s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB]
 91s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250108 [117 kB]
 91s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB]
 91s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB]
 91s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
 91s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
 91s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
 91s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB]
 91s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
 91s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
 91s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-20 [26.0 MB]
 94s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB]
 95s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB]
 95s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB]
 95s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB]
 96s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
 96s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4ubuntu2 [260 kB]
 96s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
 96s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
 96s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
 96s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
 96s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
 96s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB]
 96s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB]
 96s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB]
 96s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB]
 97s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-1 [36.6 kB]
 97s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.3.4-3ubuntu1 [42.9 kB]
 97s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B]
 97s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B]
 97s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B]
 97s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB]
 97s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B]
 97s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB]
 97s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B]
 97s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.3.4-3ubuntu1 [11.9 MB]
 98s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.3.4-3ubuntu1 [33.3 kB]
 98s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-1 [29.1 kB]
 98s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.3.4-3ubuntu1 [136 kB]
 98s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B]
 98s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB]
 98s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB]
 98s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB]
 98s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 55.0-1ubuntu1 [71.5 kB]
 98s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB]
 99s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-16ubuntu1 [910 kB]
 99s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB]
 99s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.3.4-3ubuntu1 [34.7 kB]
 99s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB]
 99s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB]
 99s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
 99s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.3.4-3ubuntu1 [146 kB]
 99s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB]
 99s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB]
 99s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB]
 99s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB]
 99s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
 99s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
 99s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
 99s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
100s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
100s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1build1 [193 kB]
100s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
100s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
100s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1.07 amd64 1.07.2+dfsg-1 [702 kB]
100s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.14.0-1 [103 kB]
100s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB]
100s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB]
100s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB]
100s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.27.1-1 [155 kB]
100s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
100s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
100s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
100s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
100s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
100s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
100s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.9 kB]
100s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB]
100s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB]
100s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
100s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
100s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
100s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
100s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
100s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB]
100s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB]
100s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB]
101s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB]
101s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB]
101s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB]
101s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB]
101s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB]
101s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1build1 [16.0 kB]
101s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.6-3 [714 kB]
101s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 55.0-1ubuntu1 [29.7 kB]
101s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 55.0-1ubuntu1 [42.7 kB]
101s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB]
101s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi40 amd64 5.0.6-4 [2523 kB]
101s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB]
101s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB]
102s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
102s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
102s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
102s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
102s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB]
102s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
102s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.2-1 [5501 kB]
103s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.13.1-1~exp2 [10.5 kB]
103s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.9-1 [5702 kB]
103s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.13.1-1~exp2 [922 B]
103s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
103s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu2 [2037 kB]
103s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu2 [221 kB]
103s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB]
103s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu2 [724 kB]
103s Get:175 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
103s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB]
103s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB]
103s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB]
103s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B]
103s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB]
103s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B]
103s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B]
103s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB]
103s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB]
103s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB]
103s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu2 [3790 kB]
104s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu2 [2560 kB]
104s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB]
104s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.5.0-1ubuntu2 [251 kB]
104s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2022.0.0-1 [55.6 kB]
104s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2022.0.0-1 [15.7 kB]
104s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2022.0.0-1 [102 kB]
104s Get:193 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-5 [70.2 kB]
104s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-5 [115 kB]
104s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB]
104s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-1.1ubuntu3 [25.3 MB]
105s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-1.1ubuntu3 [182 kB]
105s Get:198 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB]
105s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB]
105s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB]
105s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 5.0.6-4 [97.7 kB]
105s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 5.0.6-4 [191 kB]
105s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 packmol amd64 1:20.15.3-1 [135 kB]
106s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB]
106s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
106s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB]
106s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB]
106s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB]
106s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
106s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20250108 [1726 B]
106s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymatgen-test-files all 2024.10.29-1 [213 MB]
118s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB]
118s Get:213 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
119s Get:214 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB]
119s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-pymatgen-doc all 2024.10.29+dfsg1-5 [1129 kB]
119s Get:216 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B]
119s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.2-1 [508 kB]
119s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.13.1-1~exp2 [26.7 kB]
119s Get:219 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.9-1 [505 kB]
119s Get:220 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.13.1-1~exp2 [918 B]
119s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB]
119s Get:222 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [5319 kB]
119s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
119s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu1 [22.3 MB]
120s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.5.0-1ubuntu2 [31.7 kB]
120s Get:226 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB]
120s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB]
120s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5 [589 kB]
120s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB]
120s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-1 [107 kB]
120s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B]
120s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5 [9936 B]
120s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1 [271 kB]
120s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
120s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB]
120s Get:236 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB]
120s Get:237 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B]
120s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB]
120s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-6 [90.7 kB]
120s Get:240 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB]
120s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1 [27.4 kB]
120s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
120s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB]
120s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
120s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB]
120s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
121s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2 [1755 kB]
121s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3 [70.4 kB]
121s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu2 [4697 kB]
121s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ase all 3.23.0-1ubuntu1 [1754 kB]
121s Get:251 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB]
121s Get:252 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.13.3-1 [136 kB]
121s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.10.1-5 [42.8 kB]
121s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1build2 [346 kB]
121s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB]
121s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB]
121s Get:257 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 5.0-1 [10.3 kB]
121s Get:258 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB]
121s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB]
121s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB]
121s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-frozendict all 1.2-3 [4906 B]
121s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.12.1-1 [1677 kB]
121s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.12.1-1 [7970 B]
121s Get:264 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B]
121s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
121s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-6 [206 kB]
121s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB]
121s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB]
121s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB]
121s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [8248 kB]
122s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8 [3112 kB]
122s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.27.2-1 [1860 kB]
122s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB]
122s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB]
122s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1 [218 kB]
122s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB]
122s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2025.1.9-1 [40.1 kB]
122s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB]
122s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1build2 [942 kB]
122s Get:280 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
122s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB]
122s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB]
122s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-phonopy amd64 2.35.0-1 [325 kB]
122s Get:284 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB]
122s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB]
122s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
122s Get:287 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB]
122s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB]
122s Get:289 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB]
122s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB]
122s Get:291 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pymatgen amd64 2024.10.29+dfsg1-5 [2670 kB]
123s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB]
123s Get:293 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
123s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 8.1.3-4 [663 kB]
123s Get:295 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB]
123s Get:296 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 8.1.3-4 [474 kB]
123s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B]
123s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB]
123s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.18 [2510 B]
123s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpi4py amd64 4.0.1-6ubuntu1 [1098 kB]
123s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-1.1ubuntu3 [7840 kB]
124s Fetched 556 MB in 41s (13.5 MB/s)
124s Selecting previously unselected package python3.12-minimal.
124s (Reading database ... 
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(Reading database ... 90%
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(Reading database ... 108914 files and directories currently installed.)
124s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_amd64.deb ...
124s Unpacking python3.12-minimal (3.12.9-1) ...
124s Selecting previously unselected package fonts-lato.
124s Preparing to unpack .../001-fonts-lato_2.015-1_all.deb ...
124s Unpacking fonts-lato (2.015-1) ...
125s Selecting previously unselected package sgml-base.
125s Preparing to unpack .../002-sgml-base_1.31_all.deb ...
125s Unpacking sgml-base (1.31) ...
125s Selecting previously unselected package python3.12.
125s Preparing to unpack .../003-python3.12_3.12.9-1_amd64.deb ...
125s Unpacking python3.12 (3.12.9-1) ...
125s Selecting previously unselected package m4.
125s Preparing to unpack .../004-m4_1.4.19-5_amd64.deb ...
125s Unpacking m4 (1.4.19-5) ...
125s Selecting previously unselected package autoconf.
125s Preparing to unpack .../005-autoconf_2.72-3_all.deb ...
125s Unpacking autoconf (2.72-3) ...
125s Selecting previously unselected package autotools-dev.
125s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ...
125s Unpacking autotools-dev (20220109.1) ...
125s Selecting previously unselected package automake.
125s Preparing to unpack .../007-automake_1%3a1.17-3_all.deb ...
125s Unpacking automake (1:1.17-3) ...
125s Selecting previously unselected package autopoint.
125s Preparing to unpack .../008-autopoint_0.23.1-1_all.deb ...
125s Unpacking autopoint (0.23.1-1) ...
125s Selecting previously unselected package libtcl8.6:amd64.
125s Preparing to unpack .../009-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
125s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
125s Selecting previously unselected package fonts-dejavu-mono.
125s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ...
125s Unpacking fonts-dejavu-mono (2.37-8) ...
125s Selecting previously unselected package fonts-dejavu-core.
125s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ...
125s Unpacking fonts-dejavu-core (2.37-8) ...
125s Selecting previously unselected package fontconfig-config.
125s Preparing to unpack .../012-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ...
125s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
125s Selecting previously unselected package libfontconfig1:amd64.
125s Preparing to unpack .../013-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ...
125s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
125s Selecting previously unselected package libxrender1:amd64.
125s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
125s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
125s Selecting previously unselected package libxft2:amd64.
125s Preparing to unpack .../015-libxft2_2.3.6-1build1_amd64.deb ...
125s Unpacking libxft2:amd64 (2.3.6-1build1) ...
125s Selecting previously unselected package x11-common.
125s Preparing to unpack .../016-x11-common_1%3a7.7+23ubuntu3_all.deb ...
125s Unpacking x11-common (1:7.7+23ubuntu3) ...
126s Selecting previously unselected package libxss1:amd64.
126s Preparing to unpack .../017-libxss1_1%3a1.2.3-1build3_amd64.deb ...
126s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
126s Selecting previously unselected package libtk8.6:amd64.
126s Preparing to unpack .../018-libtk8.6_8.6.16-1_amd64.deb ...
126s Unpacking libtk8.6:amd64 (8.6.16-1) ...
126s Selecting previously unselected package tk8.6-blt2.5.
126s Preparing to unpack .../019-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ...
126s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
126s Selecting previously unselected package blt.
126s Preparing to unpack .../020-blt_2.5.3+dfsg-7build1_amd64.deb ...
126s Unpacking blt (2.5.3+dfsg-7build1) ...
126s Selecting previously unselected package libisl23:amd64.
126s Preparing to unpack .../021-libisl23_0.27-1_amd64.deb ...
126s Unpacking libisl23:amd64 (0.27-1) ...
126s Selecting previously unselected package libmpc3:amd64.
126s Preparing to unpack .../022-libmpc3_1.3.1-1build2_amd64.deb ...
126s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
126s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
126s Preparing to unpack .../023-cpp-14-x86-64-linux-gnu_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package cpp-14.
126s Preparing to unpack .../024-cpp-14_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking cpp-14 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package cpp-x86-64-linux-gnu.
126s Preparing to unpack .../025-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
126s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
126s Selecting previously unselected package cpp.
126s Preparing to unpack .../026-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
126s Unpacking cpp (4:14.2.0-1ubuntu1) ...
126s Selecting previously unselected package libcc1-0:amd64.
126s Preparing to unpack .../027-libcc1-0_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libcc1-0:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package libgomp1:amd64.
126s Preparing to unpack .../028-libgomp1_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libgomp1:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package libitm1:amd64.
126s Preparing to unpack .../029-libitm1_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libitm1:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package libasan8:amd64.
126s Preparing to unpack .../030-libasan8_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libasan8:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package liblsan0:amd64.
126s Preparing to unpack .../031-liblsan0_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking liblsan0:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package libtsan2:amd64.
126s Preparing to unpack .../032-libtsan2_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libtsan2:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package libubsan1:amd64.
126s Preparing to unpack .../033-libubsan1_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libubsan1:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package libhwasan0:amd64.
126s Preparing to unpack .../034-libhwasan0_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libhwasan0:amd64 (14.2.0-16ubuntu1) ...
126s Selecting previously unselected package libquadmath0:amd64.
126s Preparing to unpack .../035-libquadmath0_14.2.0-16ubuntu1_amd64.deb ...
126s Unpacking libquadmath0:amd64 (14.2.0-16ubuntu1) ...
127s Selecting previously unselected package libgcc-14-dev:amd64.
127s Preparing to unpack .../036-libgcc-14-dev_14.2.0-16ubuntu1_amd64.deb ...
127s Unpacking libgcc-14-dev:amd64 (14.2.0-16ubuntu1) ...
127s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
127s Preparing to unpack .../037-gcc-14-x86-64-linux-gnu_14.2.0-16ubuntu1_amd64.deb ...
127s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
127s Selecting previously unselected package gcc-14.
127s Preparing to unpack .../038-gcc-14_14.2.0-16ubuntu1_amd64.deb ...
127s Unpacking gcc-14 (14.2.0-16ubuntu1) ...
127s Selecting previously unselected package gcc-x86-64-linux-gnu.
127s Preparing to unpack .../039-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
127s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
127s Selecting previously unselected package gcc.
127s Preparing to unpack .../040-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
127s Unpacking gcc (4:14.2.0-1ubuntu1) ...
127s Selecting previously unselected package libstdc++-14-dev:amd64.
127s Preparing to unpack .../041-libstdc++-14-dev_14.2.0-16ubuntu1_amd64.deb ...
127s Unpacking libstdc++-14-dev:amd64 (14.2.0-16ubuntu1) ...
127s Selecting previously unselected package g++-14-x86-64-linux-gnu.
127s Preparing to unpack .../042-g++-14-x86-64-linux-gnu_14.2.0-16ubuntu1_amd64.deb ...
127s Unpacking g++-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
128s Selecting previously unselected package g++-14.
128s Preparing to unpack .../043-g++-14_14.2.0-16ubuntu1_amd64.deb ...
128s Unpacking g++-14 (14.2.0-16ubuntu1) ...
128s Selecting previously unselected package g++-x86-64-linux-gnu.
128s Preparing to unpack .../044-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
128s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
128s Selecting previously unselected package g++.
128s Preparing to unpack .../045-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
128s Unpacking g++ (4:14.2.0-1ubuntu1) ...
128s Selecting previously unselected package build-essential.
128s Preparing to unpack .../046-build-essential_12.10ubuntu1_amd64.deb ...
128s Unpacking build-essential (12.10ubuntu1) ...
128s Selecting previously unselected package cython3.
128s Preparing to unpack .../047-cython3_3.0.11+dfsg-2ubuntu1_amd64.deb ...
128s Unpacking cython3 (3.0.11+dfsg-2ubuntu1) ...
128s Selecting previously unselected package libdebhelper-perl.
128s Preparing to unpack .../048-libdebhelper-perl_13.24.1ubuntu2_all.deb ...
128s Unpacking libdebhelper-perl (13.24.1ubuntu2) ...
128s Selecting previously unselected package libtool.
128s Preparing to unpack .../049-libtool_2.5.4-3build1_all.deb ...
128s Unpacking libtool (2.5.4-3build1) ...
128s Selecting previously unselected package dh-autoreconf.
128s Preparing to unpack .../050-dh-autoreconf_20_all.deb ...
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128s Selecting previously unselected package libarchive-zip-perl.
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128s Selecting previously unselected package libfile-stripnondeterminism-perl.
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128s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
128s Selecting previously unselected package dh-strip-nondeterminism.
128s Preparing to unpack .../053-dh-strip-nondeterminism_1.14.1-2_all.deb ...
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129s Preparing to unpack .../063-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ...
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129s Selecting previously unselected package fonts-font-awesome.
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129s Selecting previously unselected package fonts-lyx.
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129s Selecting previously unselected package fonts-mathjax.
129s Preparing to unpack .../067-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
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129s Selecting previously unselected package libaec0:amd64.
129s Preparing to unpack .../068-libaec0_1.1.3-1_amd64.deb ...
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129s Selecting previously unselected package libllvm17t64:amd64.
129s Preparing to unpack .../069-libllvm17t64_1%3a17.0.6-20_amd64.deb ...
129s Unpacking libllvm17t64:amd64 (1:17.0.6-20) ...
129s Selecting previously unselected package libamd-comgr2:amd64.
129s Preparing to unpack .../070-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ...
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130s Selecting previously unselected package libhsakmt1:amd64.
130s Preparing to unpack .../071-libhsakmt1_5.7.0-1build1_amd64.deb ...
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130s Selecting previously unselected package libhsa-runtime64-1.
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130s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ...
130s Selecting previously unselected package libamdhip64-5.
130s Preparing to unpack .../073-libamdhip64-5_5.7.1-5_amd64.deb ...
130s Unpacking libamdhip64-5 (5.7.1-5) ...
130s Selecting previously unselected package libblas3:amd64.
130s Preparing to unpack .../074-libblas3_3.12.1-2_amd64.deb ...
130s Unpacking libblas3:amd64 (3.12.1-2) ...
130s Selecting previously unselected package libboost-iostreams1.83.0:amd64.
130s Preparing to unpack .../075-libboost-iostreams1.83.0_1.83.0-4ubuntu2_amd64.deb ...
130s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-4ubuntu2) ...
130s Selecting previously unselected package libpixman-1-0:amd64.
130s Preparing to unpack .../076-libpixman-1-0_0.44.0-3_amd64.deb ...
130s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
130s Selecting previously unselected package libxcb-render0:amd64.
130s Preparing to unpack .../077-libxcb-render0_1.17.0-2_amd64.deb ...
130s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
130s Selecting previously unselected package libxcb-shm0:amd64.
130s Preparing to unpack .../078-libxcb-shm0_1.17.0-2_amd64.deb ...
130s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
130s Selecting previously unselected package libcairo2:amd64.
130s Preparing to unpack .../079-libcairo2_1.18.2-2_amd64.deb ...
130s Unpacking libcairo2:amd64 (1.18.2-2) ...
130s Selecting previously unselected package libdeflate0:amd64.
130s Preparing to unpack .../080-libdeflate0_1.23-1_amd64.deb ...
130s Unpacking libdeflate0:amd64 (1.23-1) ...
130s Selecting previously unselected package libdouble-conversion3:amd64.
130s Preparing to unpack .../081-libdouble-conversion3_3.3.0-1build1_amd64.deb ...
130s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ...
130s Selecting previously unselected package libpciaccess0:amd64.
130s Preparing to unpack .../082-libpciaccess0_0.17-3build1_amd64.deb ...
130s Unpacking libpciaccess0:amd64 (0.17-3build1) ...
130s Selecting previously unselected package libdrm-intel1:amd64.
130s Preparing to unpack .../083-libdrm-intel1_2.4.123-1_amd64.deb ...
130s Unpacking libdrm-intel1:amd64 (2.4.123-1) ...
130s Selecting previously unselected package libdrm-radeon1:amd64.
130s Preparing to unpack .../084-libdrm-radeon1_2.4.123-1_amd64.deb ...
130s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ...
130s Selecting previously unselected package libwayland-server0:amd64.
130s Preparing to unpack .../085-libwayland-server0_1.23.1-1_amd64.deb ...
130s Unpacking libwayland-server0:amd64 (1.23.1-1) ...
130s Selecting previously unselected package libglapi-mesa:amd64.
130s Preparing to unpack .../086-libglapi-mesa_24.3.4-3ubuntu1_amd64.deb ...
130s Unpacking libglapi-mesa:amd64 (24.3.4-3ubuntu1) ...
130s Selecting previously unselected package libx11-xcb1:amd64.
130s Preparing to unpack .../087-libx11-xcb1_2%3a1.8.10-2_amd64.deb ...
130s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ...
130s Selecting previously unselected package libxcb-dri3-0:amd64.
130s Preparing to unpack .../088-libxcb-dri3-0_1.17.0-2_amd64.deb ...
130s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ...
130s Selecting previously unselected package libxcb-present0:amd64.
130s Preparing to unpack .../089-libxcb-present0_1.17.0-2_amd64.deb ...
130s Unpacking libxcb-present0:amd64 (1.17.0-2) ...
130s Selecting previously unselected package libxcb-randr0:amd64.
130s Preparing to unpack .../090-libxcb-randr0_1.17.0-2_amd64.deb ...
130s Unpacking libxcb-randr0:amd64 (1.17.0-2) ...
131s Selecting previously unselected package libxcb-sync1:amd64.
131s Preparing to unpack .../091-libxcb-sync1_1.17.0-2_amd64.deb ...
131s Unpacking libxcb-sync1:amd64 (1.17.0-2) ...
131s Selecting previously unselected package libxcb-xfixes0:amd64.
131s Preparing to unpack .../092-libxcb-xfixes0_1.17.0-2_amd64.deb ...
131s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ...
131s Selecting previously unselected package libxshmfence1:amd64.
131s Preparing to unpack .../093-libxshmfence1_1.3-1build5_amd64.deb ...
131s Unpacking libxshmfence1:amd64 (1.3-1build5) ...
131s Selecting previously unselected package mesa-libgallium:amd64.
131s Preparing to unpack .../094-mesa-libgallium_24.3.4-3ubuntu1_amd64.deb ...
131s Unpacking mesa-libgallium:amd64 (24.3.4-3ubuntu1) ...
131s Selecting previously unselected package libgbm1:amd64.
131s Preparing to unpack .../095-libgbm1_24.3.4-3ubuntu1_amd64.deb ...
131s Unpacking libgbm1:amd64 (24.3.4-3ubuntu1) ...
131s Selecting previously unselected package libwayland-client0:amd64.
131s Preparing to unpack .../096-libwayland-client0_1.23.1-1_amd64.deb ...
131s Unpacking libwayland-client0:amd64 (1.23.1-1) ...
131s Selecting previously unselected package libegl-mesa0:amd64.
131s Preparing to unpack .../097-libegl-mesa0_24.3.4-3ubuntu1_amd64.deb ...
131s Unpacking libegl-mesa0:amd64 (24.3.4-3ubuntu1) ...
131s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64.
131s Preparing to unpack .../098-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ...
131s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ...
131s Selecting previously unselected package libexpat1-dev:amd64.
131s Preparing to unpack .../099-libexpat1-dev_2.6.4-1_amd64.deb ...
131s Unpacking libexpat1-dev:amd64 (2.6.4-1) ...
131s Selecting previously unselected package libpsm-infinipath1.
131s Preparing to unpack .../100-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ...
131s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ...
131s Selecting previously unselected package libpsm2-2.
131s Preparing to unpack .../101-libpsm2-2_11.2.185-2.1_amd64.deb ...
131s Unpacking libpsm2-2 (11.2.185-2.1) ...
131s Selecting previously unselected package librdmacm1t64:amd64.
131s Preparing to unpack .../102-librdmacm1t64_55.0-1ubuntu1_amd64.deb ...
131s Unpacking librdmacm1t64:amd64 (55.0-1ubuntu1) ...
131s Selecting previously unselected package libfabric1:amd64.
131s Preparing to unpack .../103-libfabric1_1.17.0-3ubuntu1_amd64.deb ...
131s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ...
131s Selecting previously unselected package libgfortran5:amd64.
131s Preparing to unpack .../104-libgfortran5_14.2.0-16ubuntu1_amd64.deb ...
131s Unpacking libgfortran5:amd64 (14.2.0-16ubuntu1) ...
131s Selecting previously unselected package libvulkan1:amd64.
131s Preparing to unpack .../105-libvulkan1_1.4.304.0-1_amd64.deb ...
131s Unpacking libvulkan1:amd64 (1.4.304.0-1) ...
131s Selecting previously unselected package libgl1-mesa-dri:amd64.
131s Preparing to unpack .../106-libgl1-mesa-dri_24.3.4-3ubuntu1_amd64.deb ...
131s Unpacking libgl1-mesa-dri:amd64 (24.3.4-3ubuntu1) ...
131s Selecting previously unselected package libglvnd0:amd64.
131s Preparing to unpack .../107-libglvnd0_1.7.0-1build1_amd64.deb ...
131s Unpacking libglvnd0:amd64 (1.7.0-1build1) ...
131s Selecting previously unselected package libxcb-glx0:amd64.
131s Preparing to unpack .../108-libxcb-glx0_1.17.0-2_amd64.deb ...
131s Unpacking libxcb-glx0:amd64 (1.17.0-2) ...
131s Selecting previously unselected package libxxf86vm1:amd64.
131s Preparing to unpack .../109-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ...
131s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ...
131s Selecting previously unselected package libglx-mesa0:amd64.
131s Preparing to unpack .../110-libglx-mesa0_24.3.4-3ubuntu1_amd64.deb ...
131s Unpacking libglx-mesa0:amd64 (24.3.4-3ubuntu1) ...
131s Selecting previously unselected package libglx0:amd64.
131s Preparing to unpack .../111-libglx0_1.7.0-1build1_amd64.deb ...
131s Unpacking libglx0:amd64 (1.7.0-1build1) ...
131s Selecting previously unselected package libgl1:amd64.
131s Preparing to unpack .../112-libgl1_1.7.0-1build1_amd64.deb ...
131s Unpacking libgl1:amd64 (1.7.0-1build1) ...
132s Selecting previously unselected package libgl2ps1.4.
132s Preparing to unpack .../113-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ...
132s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
132s Selecting previously unselected package libglew2.2:amd64.
132s Preparing to unpack .../114-libglew2.2_2.2.0-4build1_amd64.deb ...
132s Unpacking libglew2.2:amd64 (2.2.0-4build1) ...
132s Selecting previously unselected package libgraphite2-3:amd64.
132s Preparing to unpack .../115-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
132s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
132s Selecting previously unselected package libharfbuzz0b:amd64.
132s Preparing to unpack .../116-libharfbuzz0b_10.2.0-1_amd64.deb ...
132s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
132s Selecting previously unselected package libsz2:amd64.
132s Preparing to unpack .../117-libsz2_1.1.3-1_amd64.deb ...
132s Unpacking libsz2:amd64 (1.1.3-1) ...
132s Selecting previously unselected package libhdf5-310:amd64.
132s Preparing to unpack .../118-libhdf5-310_1.14.5+repack-3_amd64.deb ...
132s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ...
132s Selecting previously unselected package libhdf5-hl-310:amd64.
132s Preparing to unpack .../119-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
132s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
132s Selecting previously unselected package libhwloc15:amd64.
132s Preparing to unpack .../120-libhwloc15_2.11.2-1build1_amd64.deb ...
132s Unpacking libhwloc15:amd64 (2.11.2-1build1) ...
132s Selecting previously unselected package libice6:amd64.
132s Preparing to unpack .../121-libice6_2%3a1.1.1-1_amd64.deb ...
132s Unpacking libice6:amd64 (2:1.1.1-1) ...
132s Selecting previously unselected package libimagequant0:amd64.
132s Preparing to unpack .../122-libimagequant0_2.18.0-1build1_amd64.deb ...
132s Unpacking libimagequant0:amd64 (2.18.0-1build1) ...
132s Selecting previously unselected package libinchi1.07.
132s Preparing to unpack .../123-libinchi1.07_1.07.2+dfsg-1_amd64.deb ...
132s Unpacking libinchi1.07 (1.07.2+dfsg-1) ...
132s Selecting previously unselected package libwacom-common.
132s Preparing to unpack .../124-libwacom-common_2.14.0-1_all.deb ...
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132s Selecting previously unselected package libwacom9:amd64.
132s Preparing to unpack .../125-libwacom9_2.14.0-1_amd64.deb ...
132s Unpacking libwacom9:amd64 (2.14.0-1) ...
132s Selecting previously unselected package libinput-bin.
132s Preparing to unpack .../126-libinput-bin_1.27.1-1_amd64.deb ...
132s Unpacking libinput-bin (1.27.1-1) ...
132s Selecting previously unselected package libmtdev1t64:amd64.
132s Preparing to unpack .../127-libmtdev1t64_1.1.7-1_amd64.deb ...
132s Unpacking libmtdev1t64:amd64 (1.1.7-1) ...
132s Selecting previously unselected package libinput10:amd64.
132s Preparing to unpack .../128-libinput10_1.27.1-1_amd64.deb ...
132s Unpacking libinput10:amd64 (1.27.1-1) ...
132s Selecting previously unselected package libjpeg-turbo8:amd64.
132s Preparing to unpack .../129-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
132s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
132s Selecting previously unselected package libjpeg8:amd64.
132s Preparing to unpack .../130-libjpeg8_8c-2ubuntu11_amd64.deb ...
132s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
132s Selecting previously unselected package libjs-bootstrap.
132s Preparing to unpack .../131-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
132s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
132s Selecting previously unselected package libjs-jquery.
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132s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
132s Selecting previously unselected package libjs-jquery-ui.
132s Preparing to unpack .../133-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
132s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
132s Selecting previously unselected package libjs-underscore.
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132s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
132s Selecting previously unselected package libjs-sphinxdoc.
132s Preparing to unpack .../135-libjs-sphinxdoc_8.1.3-4_all.deb ...
132s Unpacking libjs-sphinxdoc (8.1.3-4) ...
132s Selecting previously unselected package libjson-perl.
132s Preparing to unpack .../136-libjson-perl_4.10000-1_all.deb ...
132s Unpacking libjson-perl (4.10000-1) ...
132s Selecting previously unselected package libjsoncpp26:amd64.
133s Preparing to unpack .../137-libjsoncpp26_1.9.6-3_amd64.deb ...
133s Unpacking libjsoncpp26:amd64 (1.9.6-3) ...
133s Selecting previously unselected package liblapack3:amd64.
133s Preparing to unpack .../138-liblapack3_3.12.1-2_amd64.deb ...
133s Unpacking liblapack3:amd64 (3.12.1-2) ...
133s Selecting previously unselected package liblbfgsb0:amd64.
133s Preparing to unpack .../139-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ...
133s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
133s Selecting previously unselected package liblcms2-2:amd64.
133s Preparing to unpack .../140-liblcms2-2_2.16-2_amd64.deb ...
133s Unpacking liblcms2-2:amd64 (2.16-2) ...
133s Selecting previously unselected package liblerc4:amd64.
133s Preparing to unpack .../141-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
133s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
133s Selecting previously unselected package liblzf1:amd64.
133s Preparing to unpack .../142-liblzf1_3.6-4_amd64.deb ...
133s Unpacking liblzf1:amd64 (3.6-4) ...
133s Selecting previously unselected package libmaeparser1:amd64.
133s Preparing to unpack .../143-libmaeparser1_1.3.1-1build1_amd64.deb ...
133s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ...
133s Selecting previously unselected package libmd4c0:amd64.
133s Preparing to unpack .../144-libmd4c0_0.5.2-2_amd64.deb ...
133s Unpacking libmd4c0:amd64 (0.5.2-2) ...
133s Selecting previously unselected package libnetcdf19t64:amd64.
133s Preparing to unpack .../145-libnetcdf19t64_1%3a4.9.2-6ubuntu2_amd64.deb ...
133s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu2) ...
133s Selecting previously unselected package libogg0:amd64.
133s Preparing to unpack .../146-libogg0_1.3.5-3build1_amd64.deb ...
133s Unpacking libogg0:amd64 (1.3.5-3build1) ...
133s Selecting previously unselected package libopenbabel7.
133s Preparing to unpack .../147-libopenbabel7_3.1.1+dfsg-11ubuntu3_amd64.deb ...
133s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ...
133s Selecting previously unselected package libmunge2:amd64.
133s Preparing to unpack .../148-libmunge2_0.5.16-1_amd64.deb ...
133s Unpacking libmunge2:amd64 (0.5.16-1) ...
133s Selecting previously unselected package libxnvctrl0:amd64.
133s Preparing to unpack .../149-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ...
133s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ...
133s Selecting previously unselected package ocl-icd-libopencl1:amd64.
133s Preparing to unpack .../150-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ...
133s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ...
133s Selecting previously unselected package libhwloc-plugins:amd64.
133s Preparing to unpack .../151-libhwloc-plugins_2.11.2-1build1_amd64.deb ...
133s Unpacking libhwloc-plugins:amd64 (2.11.2-1build1) ...
133s Selecting previously unselected package libpmix2t64:amd64.
133s Preparing to unpack .../152-libpmix2t64_5.0.6-3_amd64.deb ...
133s Unpacking libpmix2t64:amd64 (5.0.6-3) ...
133s Selecting previously unselected package libibumad3:amd64.
133s Preparing to unpack .../153-libibumad3_55.0-1ubuntu1_amd64.deb ...
133s Unpacking libibumad3:amd64 (55.0-1ubuntu1) ...
133s Selecting previously unselected package libibmad5:amd64.
133s Preparing to unpack .../154-libibmad5_55.0-1ubuntu1_amd64.deb ...
133s Unpacking libibmad5:amd64 (55.0-1ubuntu1) ...
133s Selecting previously unselected package libucx0:amd64.
133s Preparing to unpack .../155-libucx0_1.17.0+ds-3build1_amd64.deb ...
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133s Selecting previously unselected package libopenmpi40:amd64.
133s Preparing to unpack .../156-libopenmpi40_5.0.6-4_amd64.deb ...
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133s Selecting previously unselected package libpcre2-16-0:amd64.
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133s Selecting previously unselected package proj-data.
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134s Selecting previously unselected package libsharpyuv0:amd64.
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134s Selecting previously unselected package libwebp7:amd64.
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134s Selecting previously unselected package libtiff6:amd64.
134s Preparing to unpack .../162-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
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134s Selecting previously unselected package libproj25:amd64.
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134s Selecting previously unselected package zlib1g-dev:amd64.
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134s Selecting previously unselected package libpython3.13-dev:amd64.
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134s Selecting previously unselected package libpython3-dev:amd64.
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134s Selecting previously unselected package libpython3.12-dev:amd64.
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134s Selecting previously unselected package libpython3-all-dev:amd64.
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134s Selecting previously unselected package libqhull-r8.0:amd64.
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134s Selecting previously unselected package libqt5core5t64:amd64.
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134s Selecting previously unselected package libqt5dbus5t64:amd64.
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134s Selecting previously unselected package libegl1:amd64.
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135s Selecting previously unselected package libqt5network5t64:amd64.
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135s Selecting previously unselected package libsm6:amd64.
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135s Selecting previously unselected package libxcb-icccm4:amd64.
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135s Selecting previously unselected package libxcb-util1:amd64.
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135s Selecting previously unselected package libxcb-image0:amd64.
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135s Selecting previously unselected package libxcb-keysyms1:amd64.
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135s Selecting previously unselected package libxcb-render-util0:amd64.
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135s Selecting previously unselected package libxcb-shape0:amd64.
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135s Selecting previously unselected package libxcb-xinerama0:amd64.
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135s Selecting previously unselected package libxcb-xinput0:amd64.
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135s Selecting previously unselected package libxcb-xkb1:amd64.
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135s Selecting previously unselected package libxkbcommon-x11-0:amd64.
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135s Selecting previously unselected package libqt5gui5t64:amd64.
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135s Selecting previously unselected package libqt5widgets5t64:amd64.
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135s Selecting previously unselected package libraqm0:amd64.
135s Preparing to unpack .../187-libraqm0_0.10.2-1_amd64.deb ...
135s Unpacking libraqm0:amd64 (0.10.2-1) ...
135s Selecting previously unselected package libsymspg2:amd64.
135s Preparing to unpack .../188-libsymspg2_2.5.0-1ubuntu2_amd64.deb ...
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135s Selecting previously unselected package libtbbmalloc2:amd64.
135s Preparing to unpack .../189-libtbbmalloc2_2022.0.0-1_amd64.deb ...
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135s Selecting previously unselected package libtbbbind-2-5:amd64.
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135s Selecting previously unselected package libtbb12:amd64.
135s Preparing to unpack .../191-libtbb12_2022.0.0-1_amd64.deb ...
135s Unpacking libtbb12:amd64 (2022.0.0-1) ...
135s Selecting previously unselected package libtheoradec1:amd64.
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135s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-5) ...
135s Selecting previously unselected package libtheoraenc1:amd64.
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135s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-5) ...
135s Selecting previously unselected package libopengl0:amd64.
135s Preparing to unpack .../194-libopengl0_1.7.0-1build1_amd64.deb ...
135s Unpacking libopengl0:amd64 (1.7.0-1build1) ...
135s Selecting previously unselected package libvtk9.3:amd64.
135s Preparing to unpack .../195-libvtk9.3_9.3.0+dfsg1-1.1ubuntu3_amd64.deb ...
135s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
136s Selecting previously unselected package libvtk9.3-qt:amd64.
136s Preparing to unpack .../196-libvtk9.3-qt_9.3.0+dfsg1-1.1ubuntu3_amd64.deb ...
136s Unpacking libvtk9.3-qt:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
136s Selecting previously unselected package libwebpdemux2:amd64.
136s Preparing to unpack .../197-libwebpdemux2_1.5.0-0.1_amd64.deb ...
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136s Selecting previously unselected package libwebpmux3:amd64.
136s Preparing to unpack .../198-libwebpmux3_1.5.0-0.1_amd64.deb ...
136s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ...
136s Selecting previously unselected package libxslt1.1:amd64.
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136s Selecting previously unselected package openmpi-common.
136s Preparing to unpack .../200-openmpi-common_5.0.6-4_all.deb ...
136s Unpacking openmpi-common (5.0.6-4) ...
136s Selecting previously unselected package openmpi-bin.
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136s Selecting previously unselected package packmol.
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136s Selecting previously unselected package python3-packaging.
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136s Unpacking python3-packaging (24.2-1) ...
136s Selecting previously unselected package python3-pyproject-hooks.
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136s Selecting previously unselected package python3-toml.
137s Preparing to unpack .../205-python3-toml_0.10.2-1_all.deb ...
137s Unpacking python3-toml (0.10.2-1) ...
137s Selecting previously unselected package python3-wheel.
137s Preparing to unpack .../206-python3-wheel_0.45.1-1_all.deb ...
137s Unpacking python3-wheel (0.45.1-1) ...
137s Selecting previously unselected package python3-build.
137s Preparing to unpack .../207-python3-build_1.2.2-1_all.deb ...
137s Unpacking python3-build (1.2.2-1) ...
137s Selecting previously unselected package python3-installer.
137s Preparing to unpack .../208-python3-installer_0.7.0+dfsg1-3_all.deb ...
137s Unpacking python3-installer (0.7.0+dfsg1-3) ...
137s Selecting previously unselected package pybuild-plugin-pyproject.
137s Preparing to unpack .../209-pybuild-plugin-pyproject_6.20250108_all.deb ...
137s Unpacking pybuild-plugin-pyproject (6.20250108) ...
137s Selecting previously unselected package pymatgen-test-files.
137s Preparing to unpack .../210-pymatgen-test-files_2024.10.29-1_all.deb ...
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139s Selecting previously unselected package python-matplotlib-data.
139s Preparing to unpack .../211-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ...
139s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ...
139s Selecting previously unselected package libjs-mathjax.
139s Preparing to unpack .../212-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
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140s Selecting previously unselected package sphinx-rtd-theme-common.
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140s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
140s Selecting previously unselected package python-pymatgen-doc.
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140s Selecting previously unselected package python3-all.
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140s Selecting previously unselected package python3.13-dev.
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140s Selecting previously unselected package python3-dev.
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140s Selecting previously unselected package python3.12-dev.
140s Preparing to unpack .../218-python3.12-dev_3.12.9-1_amd64.deb ...
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140s Selecting previously unselected package python3-all-dev.
140s Preparing to unpack .../219-python3-all-dev_3.13.1-1~exp2_amd64.deb ...
140s Unpacking python3-all-dev (3.13.1-1~exp2) ...
140s Selecting previously unselected package python3-annotated-types.
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140s Selecting previously unselected package python3-numpy.
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140s Selecting previously unselected package python3-decorator.
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140s Selecting previously unselected package python3-scipy.
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141s Selecting previously unselected package python3-spglib.
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141s Selecting previously unselected package python3-dateutil.
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141s Selecting previously unselected package libopenjp2-7:amd64.
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141s Selecting previously unselected package python3-pil:amd64.
141s Preparing to unpack .../227-python3-pil_11.1.0-5_amd64.deb ...
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141s Selecting previously unselected package python3.12-tk.
141s Preparing to unpack .../228-python3.12-tk_3.12.9-1_amd64.deb ...
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141s Selecting previously unselected package python3.13-tk.
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141s Selecting previously unselected package python3-tk:amd64.
141s Preparing to unpack .../230-python3-tk_3.13.1-1_amd64.deb ...
141s Unpacking python3-tk:amd64 (3.13.1-1) ...
141s Selecting previously unselected package python3-pil.imagetk:amd64.
141s Preparing to unpack .../231-python3-pil.imagetk_11.1.0-5_amd64.deb ...
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141s Selecting previously unselected package python3-contourpy.
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141s Selecting previously unselected package python3-cycler.
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141s Selecting previously unselected package python3-brotli.
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142s Selecting previously unselected package python3-pytz.
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142s Selecting previously unselected package python3-tz.
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142s Unpacking python3-tz (2025.1-3) ...
142s Selecting previously unselected package python3-platformdirs.
142s Preparing to unpack .../237-python3-platformdirs_4.3.6-1_all.deb ...
142s Unpacking python3-platformdirs (4.3.6-1) ...
142s Selecting previously unselected package python3-fs.
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142s Unpacking python3-fs (2.4.16-6) ...
142s Selecting previously unselected package python3-lxml:amd64.
142s Preparing to unpack .../239-python3-lxml_5.3.1-1_amd64.deb ...
142s Unpacking python3-lxml:amd64 (5.3.1-1) ...
142s Selecting previously unselected package python3-lz4.
142s Preparing to unpack .../240-python3-lz4_4.4.0+dfsg-1_amd64.deb ...
142s Unpacking python3-lz4 (4.4.0+dfsg-1) ...
142s Selecting previously unselected package python3-mpmath.
142s Preparing to unpack .../241-python3-mpmath_1.3.0-1_all.deb ...
142s Unpacking python3-mpmath (1.3.0-1) ...
142s Selecting previously unselected package python3-sympy.
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142s Unpacking python3-sympy (1.13.3-1) ...
142s Selecting previously unselected package python3-ufolib2.
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142s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
142s Selecting previously unselected package python3-unicodedata2.
142s Preparing to unpack .../244-python3-unicodedata2_15.1.0+ds-1build2_amd64.deb ...
142s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ...
142s Selecting previously unselected package unicode-data.
142s Preparing to unpack .../245-unicode-data_15.1.0-1_all.deb ...
142s Unpacking unicode-data (15.1.0-1) ...
143s Selecting previously unselected package python3-fonttools.
143s Preparing to unpack .../246-python3-fonttools_4.55.3-2_amd64.deb ...
143s Unpacking python3-fonttools (4.55.3-2) ...
143s Selecting previously unselected package python3-kiwisolver.
143s Preparing to unpack .../247-python3-kiwisolver_1.4.7-3_amd64.deb ...
143s Unpacking python3-kiwisolver (1.4.7-3) ...
143s Selecting previously unselected package python3-matplotlib.
143s Preparing to unpack .../248-python3-matplotlib_3.8.3-3ubuntu2_amd64.deb ...
143s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ...
143s Selecting previously unselected package python3-ase.
143s Preparing to unpack .../249-python3-ase_3.23.0-1ubuntu1_all.deb ...
143s Unpacking python3-ase (3.23.0-1ubuntu1) ...
143s Selecting previously unselected package python3-soupsieve.
143s Preparing to unpack .../250-python3-soupsieve_2.6-1_all.deb ...
143s Unpacking python3-soupsieve (2.6-1) ...
143s Selecting previously unselected package python3-bs4.
143s Preparing to unpack .../251-python3-bs4_4.13.3-1_all.deb ...
143s Unpacking python3-bs4 (4.13.3-1) ...
143s Selecting previously unselected package python3-bson.
143s Preparing to unpack .../252-python3-bson_4.10.1-5_all.deb ...
143s Unpacking python3-bson (4.10.1-5) ...
143s Selecting previously unselected package python3-cftime.
143s Preparing to unpack .../253-python3-cftime_1.6.4-1build2_amd64.deb ...
143s Unpacking python3-cftime (1.6.4-1build2) ...
143s Selecting previously unselected package python3-defusedxml.
143s Preparing to unpack .../254-python3-defusedxml_0.7.1-3_all.deb ...
143s Unpacking python3-defusedxml (0.7.1-3) ...
143s Selecting previously unselected package python3-dnspython.
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143s Unpacking python3-dnspython (2.7.0-1ubuntu1) ...
143s Selecting previously unselected package python3-roman.
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143s Unpacking python3-roman (5.0-1) ...
144s Selecting previously unselected package python3-docutils.
144s Preparing to unpack .../257-python3-docutils_0.21.2+dfsg-2_all.deb ...
144s Unpacking python3-docutils (0.21.2+dfsg-2) ...
144s Selecting previously unselected package python3-email-validator.
144s Preparing to unpack .../258-python3-email-validator_2.2.0-1_all.deb ...
144s Unpacking python3-email-validator (2.2.0-1) ...
144s Selecting previously unselected package python3-fastjsonschema.
144s Preparing to unpack .../259-python3-fastjsonschema_2.21.1-1_all.deb ...
144s Unpacking python3-fastjsonschema (2.21.1-1) ...
144s Selecting previously unselected package python3-frozendict.
144s Preparing to unpack .../260-python3-frozendict_1.2-3_all.deb ...
144s Unpacking python3-frozendict (1.2-3) ...
144s Selecting previously unselected package python3-h5py-serial.
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144s Unpacking python3-h5py-serial (3.12.1-1) ...
144s Selecting previously unselected package python3-h5py.
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144s Unpacking python3-h5py (3.12.1-1) ...
144s Selecting previously unselected package python3-imagesize.
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144s Selecting previously unselected package python3-iniconfig.
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144s Selecting previously unselected package python3-joblib.
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144s Selecting previously unselected package python3-traitlets.
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144s Selecting previously unselected package python3-latexcodec.
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144s Selecting previously unselected package python3-pandas-lib:amd64.
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145s Selecting previously unselected package python3-pydantic-core.
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145s Selecting previously unselected package python3-pydantic.
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145s Selecting previously unselected package python3-tqdm.
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145s Selecting previously unselected package python3-ruamel.yaml.clib.
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145s Selecting previously unselected package python3-ruamel.yaml.
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145s Selecting previously unselected package python3-monty.
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145s Selecting previously unselected package python3-nbformat.
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145s Selecting previously unselected package python3-netcdf4.
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146s Selecting previously unselected package python3-palettable.
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146s Selecting previously unselected package python3-phonopy.
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146s Selecting previously unselected package python3-tenacity.
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146s Selecting previously unselected package python3-plotly.
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149s Selecting previously unselected package python3-alabaster.
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149s Setting up dh-python (6.20250108) ...
149s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
149s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ...
149s Setting up liblcms2-2:amd64 (2.16-2) ...
149s Setting up python3-iniconfig (1.1.1-2) ...
150s Setting up libtbbmalloc2:amd64 (2022.0.0-1) ...
150s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
150s Setting up python3.12-minimal (3.12.9-1) ...
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151s Setting up libwayland-server0:amd64 (1.23.1-1) ...
151s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ...
151s Setting up libpciaccess0:amd64 (0.17-3build1) ...
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151s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ...
151s Setting up python3-pydantic-core (2.27.2-1) ...
151s Setting up libogg0:amd64 (1.3.5-3build1) ...
151s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
151s Setting up proj-data (9.5.1-1) ...
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151s Setting up libxcb-xinput0:amd64 (1.17.0-2) ...
151s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
151s Setting up python3-joblib (1.3.2-6) ...
151s Setting up python3-lz4 (4.4.0+dfsg-1) ...
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151s Setting up python3-defusedxml (0.7.1-3) ...
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152s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ...
152s Setting up libdrm-radeon1:amd64 (2.4.123-1) ...
152s Setting up libglvnd0:amd64 (1.7.0-1build1) ...
152s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
152s Setting up python3-alabaster (0.7.16-0.1) ...
152s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ...
152s Setting up fonts-lyx (2.4.3-1) ...
152s Setting up libxcb-glx0:amd64 (1.17.0-2) ...
152s Setting up python3-tenacity (9.0.0-0ubuntu1) ...
152s Setting up libdebhelper-perl (13.24.1ubuntu2) ...
152s Setting up python3.12 (3.12.9-1) ...
153s Setting up python3-tqdm (4.67.1-2) ...
153s Setting up libdrm-intel1:amd64 (2.4.123-1) ...
153s Setting up libxcb-keysyms1:amd64 (0.4.1-1) ...
153s Setting up libxcb-shape0:amd64 (1.17.0-2) ...
153s Setting up python3-ruamel.yaml.clib (0.2.12+ds-1) ...
153s Setting up x11-common (1:7.7+23ubuntu3) ...
154s Setting up python3-frozendict (1.2-3) ...
154s Setting up libibumad3:amd64 (55.0-1ubuntu1) ...
154s Setting up libdeflate0:amd64 (1.23-1) ...
154s Setting up python3-tabulate (0.9.0-1) ...
154s Setting up m4 (1.4.19-5) ...
154s Setting up python3-latexcodec (3.0.0-1) ...
154s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ...
154s Setting up libxcb-render-util0:amd64 (0.3.10-1) ...
154s Setting up python3-all (3.13.1-1~exp2) ...
154s Setting up python3-pytz (2025.1-3) ...
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154s Setting up libibmad5:amd64 (55.0-1ubuntu1) ...
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154s Setting up libgomp1:amd64 (14.2.0-16ubuntu1) ...
154s Setting up python3-networkx (3.2.1-4ubuntu1) ...
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157s Setting up libaec0:amd64 (1.1.3-1) ...
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157s Setting up libxcb-xkb1:amd64 (1.17.0-2) ...
157s Setting up libxcb-image0:amd64 (0.4.0-2build1) ...
157s Setting up python3-fs (2.4.16-6) ...
158s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ...
158s Setting up libxcb-present0:amd64 (1.17.0-2) ...
158s Setting up unicode-data (15.1.0-1) ...
158s Setting up libsymspg2:amd64 (2.5.0-1ubuntu2) ...
158s Setting up python3-six (1.17.0-1) ...
158s Setting up python3-bson (4.10.1-5) ...
158s Setting up python3-palettable (3.3.3-1) ...
158s Setting up python3-roman (5.0-1) ...
159s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-5) ...
159s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
159s Setting up python3-decorator (5.1.1-5) ...
159s Setting up autotools-dev (20220109.1) ...
159s Setting up libblas3:amd64 (3.12.1-2) ...
159s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
159s Setting up python3-packaging (24.2-1) ...
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159s Setting up libexpat1-dev:amd64 (2.6.4-1) ...
159s Setting up python3-pyproject-hooks (1.2.0-1) ...
159s Setting up libxcb-sync1:amd64 (1.17.0-2) ...
159s Setting up python3-snowballstemmer (2.2.0-4build1) ...
159s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4ubuntu2) ...
159s Setting up libjsoncpp26:amd64 (1.9.6-3) ...
159s Setting up python3-brotli (1.1.0-2build3) ...
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160s Setting up python3-cycler (0.12.1-1) ...
160s Setting up libimagequant0:amd64 (2.18.0-1build1) ...
160s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ...
160s Setting up fonts-dejavu-mono (2.37-8) ...
160s Setting up python3-kiwisolver (1.4.7-3) ...
160s Setting up libhwloc15:amd64 (2.11.2-1build1) ...
160s Setting up libmpc3:amd64 (1.3.1-1build2) ...
160s Setting up cython3 (3.0.11+dfsg-2ubuntu1) ...
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162s Setting up autopoint (0.23.1-1) ...
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162s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
162s Setting up libglapi-mesa:amd64 (24.3.4-3ubuntu1) ...
162s Setting up python3-toml (0.10.2-1) ...
162s Setting up python3-installer (0.7.0+dfsg1-3) ...
162s Setting up libgfortran5:amd64 (14.2.0-16ubuntu1) ...
162s Setting up libvulkan1:amd64 (1.4.304.0-1) ...
162s Setting up autoconf (2.72-3) ...
162s Setting up python3-pluggy (1.5.0-1) ...
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162s Setting up python3-pybtex (0.24.0-4) ...
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163s Setting up python3-fastjsonschema (2.21.1-1) ...
163s Setting up python3-ruamel.yaml (0.18.10+ds-1) ...
163s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
163s Setting up dwz (0.15-1build6) ...
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163s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ...
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163s Setting up python3-dnspython (2.7.0-1ubuntu1) ...
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164s Setting up python3-traitlets (5.14.3+really5.14.3-1) ...
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164s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ...
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164s Setting up openmpi-common (5.0.6-4) ...
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164s Setting up python3-dateutil (2.9.0-3) ...
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164s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
164s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ...
164s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
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165s Setting up libinchi1.07 (1.07.2+dfsg-1) ...
165s Setting up python3-soupsieve (2.6-1) ...
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165s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
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166s Setting up python3-imagesize (1.4.1-1) ...
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166s Setting up automake (1:1.17-3) ...
166s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
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177s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
177s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
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177s Setting up libgbm1:amd64 (24.3.4-3ubuntu1) ...
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177s Setting up pybuild-plugin-pyproject (6.20250108) ...
177s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
177s Setting up python3-pytest (8.3.4-1) ...
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178s Setting up libgl1-mesa-dri:amd64 (24.3.4-3ubuntu1) ...
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178s Setting up libpython3.12-dev:amd64 (3.12.9-1) ...
178s Setting up python3-nbformat (5.9.1-1) ...
178s Setting up libhwloc-plugins:amd64 (2.11.2-1build1) ...
178s Setting up python3-bs4 (4.13.3-1) ...
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178s Setting up libtbbbind-2-5:amd64 (2022.0.0-1) ...
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179s Setting up cpp-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
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190s Setting up python3-numpy (1:1.26.4+ds-13) ...
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194s Setting up python3-uncertainties (3.2.2-1) ...
194s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
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194s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
196s Regenerating fonts cache... done.
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202s Setting up libcairo2:amd64 (1.18.2-2) ...
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212s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
212s Setting up g++ (4:14.2.0-1ubuntu1) ...
212s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
212s Setting up build-essential (12.10ubuntu1) ...
212s Setting up openmpi-bin (5.0.6-4) ...
212s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
212s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist
212s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
212s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
212s Setting up mpi-default-bin (1.18) ...
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212s Setting up python3-vtk9 (9.3.0+dfsg1-1.1ubuntu3) ...
212s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
212s   patn = re.compile ("  \S")
212s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
212s   patn = re.compile ("  \S")
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214s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
215s Setting up python3-matplotlib (3.8.3-3ubuntu2) ...
217s Setting up python3-ase (3.23.0-1ubuntu1) ...
220s Setting up python3-phonopy (2.35.0-1) ...
221s Setting up python3-pymatgen (2024.10.29+dfsg1-5) ...
223s Processing triggers for libc-bin (2.40-4ubuntu1) ...
223s Processing triggers for systemd (257.2-3ubuntu1) ...
223s Processing triggers for man-db (2.13.0-1) ...
224s Processing triggers for udev (257.2-3ubuntu1) ...
225s Processing triggers for install-info (7.1.1-1) ...
225s Processing triggers for sgml-base (1.31) ...
225s Setting up docutils-common (0.21.2+dfsg-2) ...
225s Processing triggers for sgml-base (1.31) ...
225s Setting up python3-docutils (0.21.2+dfsg-2) ...
226s Setting up python3-sphinx (8.1.3-4) ...
227s Setting up python3-sphinxcontrib.jquery (4.1-5) ...
227s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
228s autopkgtest [14:17:46]: test test-pymatgen: [-----------------------
229s skipping tests with SKIP_TEST_LIST=TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_rotor_search_rrs BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_CifWriter test_read_write test_init test_get_site_symmetries test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit test_rotor_search_wrs
255s ============================= test session starts ==============================
255s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0
255s rootdir: /tmp/autopkgtest.NJmMq4/build.Fmg/src
255s configfile: pyproject.toml
255s plugins: typeguard-4.4.1
255s collected 2935 items / 282 deselected / 8 skipped / 2653 selected
255s 
257s tests/alchemy/test_filters.py .......                                    [  0%]
257s tests/alchemy/test_materials.py .........                                [  0%]
257s tests/alchemy/test_transmuters.py .                                      [  0%]
259s tests/analysis/chemenv/connectivity/test_connected_components.py .....   [  0%]
259s tests/analysis/chemenv/connectivity/test_environment_nodes.py ...        [  0%]
260s tests/analysis/chemenv/connectivity/test_structure_connectivity.py .     [  0%]
260s tests/analysis/chemenv/coordination_environments/test_chemenv_strategies.py . [  1%]
260s .                                                                        [  1%]
260s tests/analysis/chemenv/coordination_environments/test_coordination_geometries.py . [  1%]
260s ..                                                                       [  1%]
260s tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py . [  1%]
266s ..ss                                                                     [  1%]
269s tests/analysis/chemenv/coordination_environments/test_structure_environments.py . [  1%]
269s ..                                                                       [  1%]
269s tests/analysis/chemenv/coordination_environments/test_voronoi.py ..      [  1%]
270s tests/analysis/chemenv/coordination_environments/test_weights.py ....... [  1%]
270s                                                                          [  1%]
270s tests/analysis/chemenv/utils/test_chemenv_config.py .                    [  1%]
270s tests/analysis/chemenv/utils/test_coordination_geometry_utils.py ....... [  2%]
270s .....                                                                    [  2%]
270s tests/analysis/chemenv/utils/test_func_utils.py ...                      [  2%]
270s tests/analysis/chemenv/utils/test_graph_utils.py ....                    [  2%]
271s tests/analysis/chemenv/utils/test_math_utils.py .........                [  2%]
271s tests/analysis/diffraction/test_neutron.py ..                            [  2%]
272s tests/analysis/diffraction/test_tem.py ....................              [  3%]
273s tests/analysis/diffraction/test_xrd.py ..                                [  3%]
313s tests/analysis/elasticity/test_elastic.py .........................      [  4%]
313s tests/analysis/elasticity/test_strain.py ........                        [  5%]
313s tests/analysis/elasticity/test_stress.py .                               [  5%]
319s tests/analysis/ferroelectricity/test_polarization.py ............        [  5%]
322s tests/analysis/interfaces/test_coherent_interface.py ...                 [  5%]
328s tests/analysis/interfaces/test_substrate_analyzer.py ..                  [  5%]
328s tests/analysis/interfaces/test_zsl.py ..                                 [  5%]
337s tests/analysis/magnetism/test_analyzer.py .........s.                    [  6%]
337s tests/analysis/magnetism/test_heisenberg.py .......                      [  6%]
338s tests/analysis/magnetism/test_jahnteller.py ...                          [  6%]
339s tests/analysis/solar/test_slme.py .                                      [  6%]
339s tests/analysis/structure_prediction/test_dopant_predictor.py ..          [  6%]
340s tests/analysis/structure_prediction/test_substitution_probability.py ... [  6%]
340s                                                                          [  6%]
340s tests/analysis/structure_prediction/test_substitutor.py ..               [  6%]
340s tests/analysis/structure_prediction/test_volume_predictor.py ...         [  7%]
387s tests/analysis/test_adsorption.py ......                                 [  7%]
387s tests/analysis/test_bond_dissociation.py sss                             [  7%]
387s tests/analysis/test_bond_valence.py ....                                 [  7%]
390s tests/analysis/test_chempot_diagram.py ...........                       [  7%]
390s tests/analysis/test_cost.py ....                                         [  8%]
395s tests/analysis/test_dimensionality.py ..........                         [  8%]
395s tests/analysis/test_disorder.py .                                        [  8%]
395s tests/analysis/test_energy_models.py ......                              [  8%]
395s tests/analysis/test_eos.py ......                                        [  8%]
395s tests/analysis/test_ewald.py ...                                         [  9%]
407s tests/analysis/test_fragmenter.py ssss.....s                             [  9%]
420s tests/analysis/test_graphs.py ..s..................s............         [ 10%]
420s tests/analysis/test_hhi.py .                                             [ 10%]
421s tests/analysis/test_interface_reactions.py ..................            [ 11%]
436s tests/analysis/test_local_env.py .............ss.....................s.. [ 12%]
436s ...                                                                      [ 13%]
436s tests/analysis/test_molecule_matcher.py sssssss......................... [ 14%]
438s ..........................                                               [ 15%]
439s tests/analysis/test_molecule_structure_comparator.py ...s.               [ 15%]
439s tests/analysis/test_nmr.py ......                                        [ 15%]
440s tests/analysis/test_phase_diagram.py ................................... [ 16%]
454s ....................................................                     [ 18%]
454s tests/analysis/test_piezo.py ...                                         [ 18%]
456s tests/analysis/test_piezo_sensitivity.py ..............                  [ 19%]
460s tests/analysis/test_pourbaix_diagram.py ..................               [ 20%]
469s tests/analysis/test_prototypes.py .                                      [ 20%]
470s tests/analysis/test_quasi_harmonic_debye_approx.py .............         [ 20%]
472s tests/analysis/test_quasirrho.py ......                                  [ 20%]
472s tests/analysis/test_reaction_calculator.py .....................         [ 21%]
488s tests/analysis/test_structure_analyzer.py .........                      [ 22%]
489s tests/analysis/test_structure_matcher.py .............................   [ 23%]
496s tests/analysis/test_surface_analysis.py ....sss....s.s.....              [ 23%]
523s tests/analysis/test_transition_state.py ...                              [ 24%]
524s tests/analysis/test_wulff.py .....                                       [ 24%]
524s tests/analysis/test_xps.py .                                             [ 24%]
535s tests/analysis/topological/test_spillage.py .                            [ 24%]
535s tests/analysis/xas/test_spectrum.py ...........                          [ 24%]
535s tests/apps/battery/test_analyzer.py ....                                 [ 24%]
535s tests/apps/battery/test_conversion_battery.py ...                        [ 24%]
536s tests/apps/battery/test_insertion_battery.py .........                   [ 25%]
536s tests/apps/battery/test_plotter.py ..                                    [ 25%]
536s tests/apps/borg/test_hive.py ........                                    [ 25%]
536s tests/apps/borg/test_queen.py ..                                         [ 25%]
538s tests/cli/test_pmg_analyze.py .                                          [ 25%]
540s tests/cli/test_pmg_diff.py .                                             [ 25%]
556s tests/cli/test_pmg_plot.py ....                                          [ 25%]
565s tests/cli/test_pmg_structure.py .                                        [ 26%]
565s tests/command_line/test_bader_caller.py ssss                             [ 26%]
565s tests/command_line/test_chargemol_caller.py ..                           [ 26%]
565s tests/command_line/test_critic2_caller.py ss..                           [ 26%]
565s tests/command_line/test_enumlib_caller.py sss                            [ 26%]
565s tests/command_line/test_gulp_caller.py sssssssssssssssssssssssssss       [ 27%]
565s tests/command_line/test_mcsqs_caller.py sssssss                          [ 27%]
565s tests/command_line/test_vampire_caller.py s                              [ 27%]
565s tests/core/test_bonds.py .......                                         [ 28%]
565s tests/core/test_composition.py ......................................... [ 29%]
565s ............                                                             [ 30%]
577s tests/core/test_interface.py ......................                      [ 30%]
577s tests/core/test_ion.py ...............                                   [ 31%]
577s tests/core/test_lattice.py ................................              [ 32%]
577s tests/core/test_libxcfunc.py ..                                          [ 32%]
577s tests/core/test_molecular_orbitals.py ....                               [ 32%]
578s tests/core/test_operations.py ................                           [ 33%]
578s tests/core/test_periodic_table.py ...................................... [ 34%]
578s ....................                                                     [ 35%]
578s tests/core/test_settings.py ..                                           [ 35%]
578s tests/core/test_sites.py ....................                            [ 36%]
578s tests/core/test_spectrum.py .....                                        [ 36%]
582s tests/core/test_structure.py .................s.......s................. [ 38%]
598s ..................ss....s.................ssss.......................... [ 41%]
598s ....................s.......s.......                                     [ 42%]
682s tests/core/test_surface.py .......................s....                  [ 43%]
687s tests/core/test_tensors.py ............................                  [ 44%]
732s tests/core/test_trajectory.py .................                          [ 45%]
732s tests/core/test_units.py .................                               [ 45%]
732s tests/core/test_xcfunc.py ....s.                                         [ 46%]
738s tests/electronic_structure/test_bandstructure.py ....................... [ 46%]
746s .........                                                                [ 47%]
746s tests/electronic_structure/test_boltztrap.py ssssssssssssssss            [ 47%]
776s tests/electronic_structure/test_cohp.py ..............................   [ 48%]
776s tests/electronic_structure/test_core.py ..........                       [ 49%]
786s tests/electronic_structure/test_dos.py .........................         [ 50%]
847s tests/electronic_structure/test_plotter.py ...............ssssssssssssss [ 51%]
847s sssss.....                                                               [ 51%]
850s tests/entries/test_compatibility.py .................................... [ 53%]
851s ...................................................                      [ 55%]
851s tests/entries/test_computed_entries.py ................................. [ 56%]
852s ....                                                                     [ 56%]
854s tests/entries/test_correction_calculator.py ....                         [ 56%]
865s tests/entries/test_entry_tools.py .......                                [ 56%]
865s tests/entries/test_exp_entries.py ...                                    [ 56%]
867s tests/entries/test_mixing_scheme.py ...............................      [ 58%]
869s tests/ext/test_cod.py ..                                                 [ 58%]
902s tests/ext/test_optimade.py .....                                         [ 58%]
903s tests/io/abinit/test_abiobjects.py .........                             [ 58%]
903s tests/io/abinit/test_inputs.py ........                                  [ 59%]
903s tests/io/abinit/test_netcdf.py ...                                       [ 59%]
903s tests/io/abinit/test_pseudos.py ......                                   [ 59%]
903s tests/io/aims/sets/test_bs_generator.py ...                              [ 59%]
903s tests/io/aims/sets/test_gw_generator.py .                                [ 59%]
903s tests/io/aims/sets/test_input_set.py .                                   [ 59%]
903s tests/io/aims/sets/test_md_generator.py .                                [ 59%]
903s tests/io/aims/sets/test_relax_generator.py ...                           [ 59%]
903s tests/io/aims/sets/test_static_generator.py ....                         [ 59%]
903s tests/io/aims/sets/test_static_restart_from_relax_generator.py .....     [ 60%]
903s tests/io/aims/test_inputs.py ......                                      [ 60%]
903s tests/io/aims/test_outputs.py ......                                     [ 60%]
904s tests/io/aims/test_parsers.py .......................................... [ 62%]
904s ......................................................                   [ 64%]
904s tests/io/cp2k/test_inputs.py ..............                              [ 64%]
904s tests/io/cp2k/test_outputs.py .......                                    [ 64%]
904s tests/io/exciting/test_inputs.py .s..                                    [ 65%]
904s tests/io/feff/test_inputs.py ..................                          [ 65%]
904s tests/io/feff/test_outputs.py ......                                     [ 65%]
920s tests/io/lammps/test_data.py .............................               [ 67%]
920s tests/io/lammps/test_generators.py .                                     [ 67%]
921s tests/io/lammps/test_inputs.py .....................                     [ 67%]
921s tests/io/lammps/test_outputs.py ....                                     [ 68%]
922s tests/io/lammps/test_utils.py ...                                        [ 68%]
929s tests/io/lobster/test_inputs.py ................                         [ 68%]
954s tests/io/lobster/test_lobsterenv.py .................                    [ 69%]
975s tests/io/lobster/test_outputs.py ....................................... [ 70%]
977s .........                                                                [ 71%]
977s tests/io/pwmat/test_inputs.py ..........                                 [ 71%]
977s tests/io/qchem/test_inputs.py ...................................        [ 72%]
1001s tests/io/qchem/test_outputs.py .................s...                     [ 73%]
1001s tests/io/qchem/test_utils.py ..                                          [ 73%]
1001s tests/io/test_adf.py ..............                                      [ 74%]
1002s tests/io/test_ase.py .......................                             [ 75%]
1002s tests/io/test_atat.py ....                                               [ 75%]
1004s tests/io/test_cif.py ........s....................................       [ 77%]
1010s tests/io/test_common.py ..                                               [ 77%]
1010s tests/io/test_core.py .........                                          [ 77%]
1010s tests/io/test_cssr.py ..                                                 [ 77%]
1010s tests/io/test_fiesta.py ..                                               [ 77%]
1011s tests/io/test_gaussian.py .................                              [ 78%]
1011s tests/io/test_jarvis.py ss                                               [ 78%]
1011s tests/io/test_lmto.py .....                                              [ 78%]
1011s tests/io/test_multiwfn.py .....                                          [ 78%]
1012s tests/io/test_nwchem.py ............                                     [ 79%]
1012s tests/io/test_optimade.py .                                              [ 79%]
1026s tests/io/test_packmol.py .......s.                                       [ 79%]
1052s tests/io/test_phonopy.py ...........                                     [ 79%]
1052s tests/io/test_prismatic.py .                                             [ 79%]
1052s tests/io/test_pwscf.py .............                                     [ 80%]
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1052s tests/io/test_template_input.py .                                        [ 81%]
1052s tests/io/test_wannier90.py ....                                          [ 81%]
1052s tests/io/test_xcrysden.py ....                                           [ 81%]
1052s tests/io/test_xr.py ..                                                   [ 81%]
1053s tests/io/test_xyz.py ........                                            [ 81%]
1055s tests/io/vasp/test_help.py ...                                           [ 81%]
1055s tests/io/vasp/test_inputs.py ........................................... [ 83%]
1057s .........................s.............                                  [ 84%]
1072s tests/io/vasp/test_optics.py ...                                         [ 85%]
1134s tests/io/vasp/test_outputs.py .......................................... [ 86%]
1181s .................................................................        [ 89%]
1181s tests/io/xtb/test_inputs.py ..                                           [ 89%]
1181s tests/optimization/test_linear_assignment.py ....                        [ 89%]
1181s tests/optimization/test_neighbors.py .                                   [ 89%]
1182s tests/phonon/test_bandstructure.py ...........                           [ 89%]
1182s tests/phonon/test_dos.py ...................                             [ 90%]
1388s tests/phonon/test_gruneisen.py ..............                            [ 90%]
1388s tests/phonon/test_ir_spectra.py .                                        [ 91%]
1397s tests/phonon/test_plotter.py ........                                    [ 91%]
1398s tests/phonon/test_thermal_displacements.py ..............                [ 91%]
1400s tests/symmetry/test_analyzer.py .................................        [ 93%]
1438s tests/symmetry/test_groups.py ........................                   [ 94%]
1466s tests/symmetry/test_kpath_lm.py ...                                      [ 94%]
1479s tests/symmetry/test_kpath_sc.py ..                                       [ 94%]
1481s tests/symmetry/test_kpaths.py .s                                         [ 94%]
1482s tests/symmetry/test_maggroups.py ......                                  [ 94%]
1482s tests/symmetry/test_settings.py ....                                     [ 94%]
1482s tests/symmetry/test_site_symmetries.py .                                 [ 94%]
1482s tests/test_pkg.py s                                                      [ 94%]
1482s tests/transformations/test_advanced_transformations.py .s..sssss..ssssss [ 95%]
1533s ss...ssssss....s                                                         [ 95%]
1533s tests/transformations/test_site_transformations.py ...........s......    [ 96%]
1533s tests/transformations/test_standard_transformations.py ............ssss. [ 97%]
1536s ...........                                                              [ 97%]
1536s tests/util/test_coord.py ......................                          [ 98%]
1536s tests/util/test_graph_hashing.py ..                                      [ 98%]
1536s tests/util/test_io.py .                                                  [ 98%]
1536s tests/util/test_misc.py ......                                           [ 98%]
1536s tests/util/test_num.py .                                                 [ 98%]
1536s tests/util/test_plotting.py ..                                           [ 98%]
1536s tests/util/test_provenance.py ........                                   [ 99%]
1536s tests/util/test_string.py ...........                                    [ 99%]
1536s tests/util/test_typing.py .....                                          [ 99%]
1537s tests/vis/test_plotters.py ...                                           [100%]
1537s 
1537s ============================= slowest 30 durations =============================
1537s 49.40s call     tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell
1537s 37.19s call     tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods
1537s 28.11s call     tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation
1537s 23.48s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot
1537s 21.94s call     tests/ext/test_optimade.py::TestOptimade::test_update_aliases
1537s 18.68s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp
1537s 18.62s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos
1537s 18.04s call     tests/core/test_surface.py::TestSlab::test_symmetrization
1537s 17.90s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack
1537s 17.60s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict
1537s 17.49s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy
1537s 17.37s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos
1537s 17.35s call     tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab
1537s 17.30s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen
1537s 17.16s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies
1537s 17.06s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi
1537s 16.91s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen
1537s 16.46s call     tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter
1537s 14.60s call     tests/io/vasp/test_outputs.py::TestVasprun::test_runtype
1537s 14.52s call     tests/io/vasp/test_optics.py::TestVasprun::test_optics
1537s 14.30s call     tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number
1537s 12.99s call     tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation
1537s 12.76s call     tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress
1537s 12.13s call     tests/core/test_surface.py::TestSlab::test_get_symmetric_sites
1537s 11.86s call     tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops
1537s 11.51s call     tests/core/test_trajectory.py::TestTrajectory::test_extend
1537s 10.80s call     tests/core/test_surface.py::TestMillerIndexFinder::test_generate_all_slabs
1537s 10.78s call     tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states
1537s 10.46s call     tests/analysis/topological/test_spillage.py::TestSolar::test_spillage_from_vasprun
1537s 10.28s call     tests/analysis/test_adsorption.py::TestAdsorbateSiteFinder::test_from_bulk_and_miller
1537s =========================== short test summary info ============================
1537s SKIPPED [1] tests/analysis/test_functional_groups.py:16: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2
1537s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down
1537s SKIPPED [1] tests/io/test_babel.py:17: could not import 'openbabel.pybel': No module named '_openbabel'
1537s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff'
1537s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml'
1537s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed
1537s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed
1537s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this
1537s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this
1537s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:263: enumlib not present
1537s SKIPPED [3] tests/analysis/test_bond_dissociation.py:17: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/analysis/test_fragmenter.py:83: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/analysis/test_fragmenter.py:68: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/analysis/test_fragmenter.py:74: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/analysis/test_fragmenter.py:111: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/analysis/test_fragmenter.py:161: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/analysis/test_graphs.py:347: graphviz executables not present
1537s SKIPPED [1] tests/analysis/test_graphs.py:588: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [2] tests/analysis/test_local_env.py:294: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/analysis/test_local_env.py:1355: critic2 executable not present
1537s SKIPPED [1] tests/analysis/test_molecule_matcher.py:157: OBAlign is missing, Skipping
1537s SKIPPED [1] tests/analysis/test_molecule_matcher.py:164: OBAlign is missing, Skipping
1537s SKIPPED [1] tests/analysis/test_molecule_matcher.py:176: OBAlign is missing, Skipping
1537s SKIPPED [1] tests/analysis/test_molecule_matcher.py:243: OBAlign is missing, Skipping
1537s SKIPPED [1] tests/analysis/test_molecule_matcher.py:250: OBAlign is missing, Skipping
1537s SKIPPED [1] tests/analysis/test_molecule_matcher.py:257: OBAlign is missing, Skipping
1537s SKIPPED [1] tests/analysis/test_molecule_matcher.py:264: OBAlign is missing, Skipping
1537s SKIPPED [1] tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this
1537s SKIPPED [1] tests/analysis/test_surface_analysis.py:263: TODO: need someone to fix this
1537s SKIPPED [1] tests/analysis/test_surface_analysis.py:270: TODO: need someone to fix this
1537s SKIPPED [1] tests/analysis/test_surface_analysis.py:278: TODO: need someone to fix this
1537s SKIPPED [1] tests/analysis/test_surface_analysis.py:256: TODO: need someone to fix this
1537s SKIPPED [1] tests/analysis/test_surface_analysis.py:286: TODO: need someone to fix this
1537s SKIPPED [1] tests/command_line/test_bader_caller.py:119: bader executable not present
1537s SKIPPED [1] tests/command_line/test_bader_caller.py:84: bader executable not present
1537s SKIPPED [1] tests/command_line/test_bader_caller.py:66: bader executable not present
1537s SKIPPED [1] tests/command_line/test_bader_caller.py:134: bader executable not present
1537s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present
1537s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present
1537s SKIPPED [1] tests/command_line/test_enumlib_caller.py:92: enum_lib not present.
1537s SKIPPED [1] tests/command_line/test_enumlib_caller.py:80: enum_lib not present.
1537s SKIPPED [1] tests/command_line/test_enumlib_caller.py:122: enum_lib not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:74: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:181: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:148: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:236: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:272: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:139: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:144: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:135: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:130: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:126: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:283: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:320: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:332: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:345: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:352: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:363: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:359: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:383: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:373: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:379: gulp not present.
1537s SKIPPED [1] tests/command_line/test_gulp_caller.py:386: gulp not present.
1537s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present
1537s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present
1537s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present
1537s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present
1537s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present
1537s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present
1537s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present
1537s SKIPPED [1] tests/command_line/test_vampire_caller.py:34: vampire executable not present
1537s SKIPPED [1] tests/core/test_structure.py:712: Only run this in CI tests
1537s SKIPPED [1] tests/core/test_structure.py:105: enumlib or mcsqs executable not present
1537s SKIPPED [1] tests/core/test_structure.py:1832: chgnet is failing with Numpy 1, see #3992
1537s SKIPPED [1] tests/core/test_structure.py:1904: TODO: #3958 wait for matgl resolve of torch dependency
1537s SKIPPED [1] tests/core/test_structure.py:985: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR.
1537s SKIPPED [1] tests/core/test_structure.py:1807: chgnet is failing with Numpy 1, see #3992
1537s SKIPPED [1] tests/core/test_structure.py:1916: TODO: #3958 wait for matgl resolve of torch dependency
1537s SKIPPED [1] tests/core/test_structure.py:1927: TODO: #3958 wait for matgl resolve of torch dependency
1537s SKIPPED [1] tests/core/test_structure.py:1936: TODO: #3958 wait for matgl resolve of torch dependency
1537s SKIPPED [1] tests/core/test_structure.py:2567: could not import 'tblite': No module named 'tblite'
1537s SKIPPED [1] tests/core/test_structure.py:2575: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060
1537s SKIPPED [1] tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily
1537s SKIPPED [1] tests/core/test_xcfunc.py:56: TODO:
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:252: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:219: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:239: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:167: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:197: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:230: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:99: No FDINT
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:121: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:201: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:130: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:114: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:84: No FDINT
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:205: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:139: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:155: No x_trans.
1537s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:41: No x_trans.
1537s SKIPPED [19] tests/electronic_structure/test_plotter.py: No x_trans executable found
1537s SKIPPED [1] tests/io/exciting/test_inputs.py:136: inconsistent data
1537s SKIPPED [1] tests/io/qchem/test_outputs.py:350: OpenBabel not installed.
1537s SKIPPED [1] tests/io/test_cif.py:292: non-free PF*.cif test files are not available
1537s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded.
1537s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded.
1537s SKIPPED [1] tests/io/test_packmol.py:199: could not import 'openbabel': No module named '_openbabel'
1537s SKIPPED [1] tests/io/vasp/test_inputs.py:1469: TODO: need someone to fix this
1537s SKIPPED [1] tests/symmetry/test_kpaths.py:21: No seek path present.
1537s SKIPPED [1] tests/test_pkg.py:11: SRC_TXT_PATH='src/pymatgen.egg-info/SOURCES.txt' not found. Run `pip install .` to create
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:97: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:158: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:188: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:203: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:229: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:241: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:356: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:296: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:334: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:326: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:344: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:484: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:532: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:541: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:599: mcsqs not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:609: mcsqs not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:630: mcsqs not present.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:662: icet not installed.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:648: icet not installed.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:673: icet not installed.
1537s SKIPPED [1] tests/transformations/test_advanced_transformations.py:866: hiphive not present
1537s SKIPPED [1] tests/transformations/test_site_transformations.py:213: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_standard_transformations.py:227: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_standard_transformations.py:244: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_standard_transformations.py:262: enum_lib not present.
1537s SKIPPED [1] tests/transformations/test_standard_transformations.py:268: enum_lib not present.
1537s ======== 2497 passed, 164 skipped, 282 deselected in 1308.07s (0:21:48) ========
1561s ============================= test session starts ==============================
1561s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0
1561s rootdir: /tmp/autopkgtest.NJmMq4/build.Fmg/src
1561s configfile: pyproject.toml
1561s plugins: typeguard-4.4.1
1561s collected 2953 items / 286 deselected / 6 skipped / 2667 selected
1561s 
1562s tests/alchemy/test_filters.py .......                                    [  0%]
1562s tests/alchemy/test_materials.py .........                                [  0%]
1563s tests/alchemy/test_transmuters.py .                                      [  0%]
1565s tests/analysis/chemenv/connectivity/test_connected_components.py .....   [  0%]
1565s tests/analysis/chemenv/connectivity/test_environment_nodes.py ...        [  0%]
1565s tests/analysis/chemenv/connectivity/test_structure_connectivity.py .     [  0%]
1565s tests/analysis/chemenv/coordination_environments/test_chemenv_strategies.py . [  1%]
1565s .                                                                        [  1%]
1565s tests/analysis/chemenv/coordination_environments/test_coordination_geometries.py . [  1%]
1565s ..                                                                       [  1%]
1565s tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py . [  1%]
1572s ..ss                                                                     [  1%]
1576s tests/analysis/chemenv/coordination_environments/test_structure_environments.py . [  1%]
1576s ..                                                                       [  1%]
1576s tests/analysis/chemenv/coordination_environments/test_voronoi.py ..      [  1%]
1576s tests/analysis/chemenv/coordination_environments/test_weights.py ....... [  1%]
1576s                                                                          [  1%]
1576s tests/analysis/chemenv/utils/test_chemenv_config.py .                    [  1%]
1577s tests/analysis/chemenv/utils/test_coordination_geometry_utils.py ....... [  2%]
1577s .....                                                                    [  2%]
1577s tests/analysis/chemenv/utils/test_func_utils.py ...                      [  2%]
1577s tests/analysis/chemenv/utils/test_graph_utils.py ....                    [  2%]
1577s tests/analysis/chemenv/utils/test_math_utils.py .........                [  2%]
1577s tests/analysis/diffraction/test_neutron.py ..                            [  2%]
1578s tests/analysis/diffraction/test_tem.py ....................              [  3%]
1578s tests/analysis/diffraction/test_xrd.py ..                                [  3%]
1617s tests/analysis/elasticity/test_elastic.py .........................      [  4%]
1617s tests/analysis/elasticity/test_strain.py ........                        [  5%]
1617s tests/analysis/elasticity/test_stress.py .                               [  5%]
1622s tests/analysis/ferroelectricity/test_polarization.py ............        [  5%]
1626s tests/analysis/interfaces/test_coherent_interface.py ...                 [  5%]
1633s tests/analysis/interfaces/test_substrate_analyzer.py ..                  [  5%]
1633s tests/analysis/interfaces/test_zsl.py ..                                 [  5%]
1641s tests/analysis/magnetism/test_analyzer.py .........s.                    [  6%]
1642s tests/analysis/magnetism/test_heisenberg.py .......                      [  6%]
1642s tests/analysis/magnetism/test_jahnteller.py ...                          [  6%]
1643s tests/analysis/solar/test_slme.py .                                      [  6%]
1644s tests/analysis/structure_prediction/test_dopant_predictor.py ..          [  6%]
1644s tests/analysis/structure_prediction/test_substitution_probability.py ... [  6%]
1644s                                                                          [  6%]
1644s tests/analysis/structure_prediction/test_substitutor.py ..               [  6%]
1644s tests/analysis/structure_prediction/test_volume_predictor.py ...         [  6%]
1684s tests/analysis/test_adsorption.py ......                                 [  7%]
1686s tests/analysis/test_bond_dissociation.py ...                             [  7%]
1686s tests/analysis/test_bond_valence.py ....                                 [  7%]
1688s tests/analysis/test_chempot_diagram.py ...........                       [  7%]
1689s tests/analysis/test_cost.py ....                                         [  8%]
1693s tests/analysis/test_dimensionality.py ..........                         [  8%]
1693s tests/analysis/test_disorder.py .                                        [  8%]
1693s tests/analysis/test_energy_models.py ......                              [  8%]
1693s tests/analysis/test_eos.py ......                                        [  8%]
1693s tests/analysis/test_ewald.py ...                                         [  8%]
1733s tests/analysis/test_fragmenter.py ..........                             [  9%]
1733s tests/analysis/test_functional_groups.py ......                          [  9%]
1749s tests/analysis/test_graphs.py ..s...............................         [ 10%]
1749s tests/analysis/test_hhi.py .                                             [ 10%]
1749s tests/analysis/test_interface_reactions.py ..................            [ 11%]
1764s tests/analysis/test_local_env.py ....................................s.. [ 13%]
1764s ...                                                                      [ 13%]
1764s tests/analysis/test_molecule_matcher.py ................................ [ 14%]
1765s ..........................                                               [ 15%]
1765s tests/analysis/test_molecule_structure_comparator.py ...s.               [ 15%]
1765s tests/analysis/test_nmr.py ......                                        [ 15%]
1767s tests/analysis/test_phase_diagram.py ................................... [ 17%]
1781s ....................................................                     [ 19%]
1781s tests/analysis/test_piezo.py ...                                         [ 19%]
1783s tests/analysis/test_piezo_sensitivity.py ..............                  [ 19%]
1786s tests/analysis/test_pourbaix_diagram.py ..................               [ 20%]
1795s tests/analysis/test_prototypes.py .                                      [ 20%]
1795s tests/analysis/test_quasi_harmonic_debye_approx.py .............         [ 20%]
1798s tests/analysis/test_quasirrho.py ......                                  [ 21%]
1798s tests/analysis/test_reaction_calculator.py .....................         [ 21%]
1812s tests/analysis/test_structure_analyzer.py .........                      [ 22%]
1815s tests/analysis/test_structure_matcher.py .............................   [ 23%]
1824s tests/analysis/test_surface_analysis.py ....sss....s.s.....              [ 23%]
1846s tests/analysis/test_transition_state.py ...                              [ 24%]
1847s tests/analysis/test_wulff.py .....                                       [ 24%]
1847s tests/analysis/test_xps.py .                                             [ 24%]
1855s tests/analysis/topological/test_spillage.py .                            [ 24%]
1855s tests/analysis/xas/test_spectrum.py ...........                          [ 24%]
1855s tests/apps/battery/test_analyzer.py ....                                 [ 24%]
1856s tests/apps/battery/test_conversion_battery.py ...                        [ 25%]
1856s tests/apps/battery/test_insertion_battery.py .........                   [ 25%]
1856s tests/apps/battery/test_plotter.py ..                                    [ 25%]
1856s tests/apps/borg/test_hive.py ........                                    [ 25%]
1856s tests/apps/borg/test_queen.py ..                                         [ 25%]
1859s tests/cli/test_pmg_analyze.py .                                          [ 25%]
1861s tests/cli/test_pmg_diff.py .                                             [ 25%]
1876s tests/cli/test_pmg_plot.py ....                                          [ 26%]
1884s tests/cli/test_pmg_structure.py .                                        [ 26%]
1884s tests/command_line/test_bader_caller.py ssss                             [ 26%]
1884s tests/command_line/test_chargemol_caller.py ..                           [ 26%]
1884s tests/command_line/test_critic2_caller.py ss..                           [ 26%]
1884s tests/command_line/test_enumlib_caller.py sss                            [ 26%]
1885s tests/command_line/test_gulp_caller.py sssssssssssssssssssssssssss       [ 27%]
1885s tests/command_line/test_mcsqs_caller.py sssssss                          [ 27%]
1885s tests/command_line/test_vampire_caller.py s                              [ 27%]
1885s tests/core/test_bonds.py .......                                         [ 28%]
1885s tests/core/test_composition.py ......................................... [ 29%]
1885s ............                                                             [ 30%]
1896s tests/core/test_interface.py ......................                      [ 30%]
1896s tests/core/test_ion.py ...............                                   [ 31%]
1896s tests/core/test_lattice.py ................................              [ 32%]
1896s tests/core/test_libxcfunc.py ..                                          [ 32%]
1896s tests/core/test_molecular_orbitals.py ....                               [ 32%]
1896s tests/core/test_operations.py ................                           [ 33%]
1896s tests/core/test_periodic_table.py ...................................... [ 34%]
1897s ....................                                                     [ 35%]
1897s tests/core/test_settings.py ..                                           [ 35%]
1897s tests/core/test_sites.py ....................                            [ 36%]
1897s tests/core/test_spectrum.py .....                                        [ 36%]
1899s tests/core/test_structure.py .................s.......s................. [ 38%]
1916s ..................ss....s.................ssss.......................... [ 41%]
1916s ....................s.......s.......                                     [ 42%]
1996s tests/core/test_surface.py .......................s....                  [ 43%]
2003s tests/core/test_tensors.py ............................                  [ 44%]
2051s tests/core/test_trajectory.py .................                          [ 45%]
2051s tests/core/test_units.py .................                               [ 45%]
2051s tests/core/test_xcfunc.py ....s.                                         [ 46%]
2059s tests/electronic_structure/test_bandstructure.py ....................... [ 46%]
2068s .........                                                                [ 47%]
2068s tests/electronic_structure/test_boltztrap.py ssssssssssssssss            [ 47%]
2103s tests/electronic_structure/test_cohp.py ..............................   [ 48%]
2103s tests/electronic_structure/test_core.py ..........                       [ 49%]
2115s tests/electronic_structure/test_dos.py .........................         [ 50%]
2177s tests/electronic_structure/test_plotter.py ...............ssssssssssssss [ 51%]
2178s sssss.....                                                               [ 51%]
2182s tests/entries/test_compatibility.py .................................... [ 53%]
2183s ...................................................                      [ 54%]
2183s tests/entries/test_computed_entries.py ................................. [ 56%]
2183s ....                                                                     [ 56%]
2186s tests/entries/test_correction_calculator.py ....                         [ 56%]
2200s tests/entries/test_entry_tools.py .......                                [ 56%]
2200s tests/entries/test_exp_entries.py ...                                    [ 56%]
2202s tests/entries/test_mixing_scheme.py ...............................      [ 58%]
2204s tests/ext/test_cod.py ..                                                 [ 58%]
2235s tests/ext/test_optimade.py .....                                         [ 58%]
2235s tests/io/abinit/test_abiobjects.py .........                             [ 58%]
2235s tests/io/abinit/test_inputs.py ........                                  [ 58%]
2235s tests/io/abinit/test_netcdf.py ...                                       [ 59%]
2235s tests/io/abinit/test_pseudos.py ......                                   [ 59%]
2235s tests/io/aims/sets/test_bs_generator.py ...                              [ 59%]
2235s tests/io/aims/sets/test_gw_generator.py .                                [ 59%]
2235s tests/io/aims/sets/test_input_set.py .                                   [ 59%]
2235s tests/io/aims/sets/test_md_generator.py .                                [ 59%]
2235s tests/io/aims/sets/test_relax_generator.py ...                           [ 59%]
2235s tests/io/aims/sets/test_static_generator.py ....                         [ 59%]
2235s tests/io/aims/sets/test_static_restart_from_relax_generator.py .....     [ 59%]
2235s tests/io/aims/test_inputs.py ......                                      [ 60%]
2236s tests/io/aims/test_outputs.py ......                                     [ 60%]
2236s tests/io/aims/test_parsers.py .......................................... [ 61%]
2236s ......................................................                   [ 64%]
2236s tests/io/cp2k/test_inputs.py ..............                              [ 64%]
2236s tests/io/cp2k/test_outputs.py .......                                    [ 64%]
2236s tests/io/exciting/test_inputs.py .s..                                    [ 64%]
2237s tests/io/feff/test_inputs.py ..................                          [ 65%]
2237s tests/io/feff/test_outputs.py ......                                     [ 65%]
2254s tests/io/lammps/test_data.py .............................               [ 66%]
2254s tests/io/lammps/test_generators.py .                                     [ 66%]
2255s tests/io/lammps/test_inputs.py .....................                     [ 67%]
2255s tests/io/lammps/test_outputs.py ....                                     [ 67%]
2256s tests/io/lammps/test_utils.py ...                                        [ 68%]
2268s tests/io/lobster/test_inputs.py ................                         [ 68%]
2296s tests/io/lobster/test_lobsterenv.py .................                    [ 69%]
2319s tests/io/lobster/test_outputs.py ....................................... [ 70%]
2322s .........                                                                [ 71%]
2322s tests/io/pwmat/test_inputs.py ..........                                 [ 71%]
2322s tests/io/qchem/test_inputs.py ...................................        [ 72%]
2351s tests/io/qchem/test_outputs.py .....................                     [ 73%]
2351s tests/io/qchem/test_utils.py ..                                          [ 73%]
2351s tests/io/test_adf.py ..............                                      [ 74%]
2352s tests/io/test_ase.py .......................                             [ 74%]
2352s tests/io/test_atat.py ....                                               [ 75%]
2352s tests/io/test_babel.py ........                                          [ 75%]
2354s tests/io/test_cif.py ........s....................................       [ 77%]
2362s tests/io/test_common.py ..                                               [ 77%]
2362s tests/io/test_core.py .........                                          [ 77%]
2362s tests/io/test_cssr.py ..                                                 [ 77%]
2362s tests/io/test_fiesta.py ..                                               [ 77%]
2362s tests/io/test_gaussian.py .................                              [ 78%]
2362s tests/io/test_jarvis.py ss                                               [ 78%]
2363s tests/io/test_lmto.py .....                                              [ 78%]
2363s tests/io/test_multiwfn.py .....                                          [ 78%]
2364s tests/io/test_nwchem.py ............                                     [ 79%]
2364s tests/io/test_optimade.py .                                              [ 79%]
2379s tests/io/test_packmol.py .........                                       [ 79%]
2411s tests/io/test_phonopy.py ...........                                     [ 80%]
2411s tests/io/test_prismatic.py .                                             [ 80%]
2411s tests/io/test_pwscf.py .............                                     [ 80%]
2411s tests/io/test_res.py ...............                                     [ 81%]
2411s tests/io/test_template_input.py .                                        [ 81%]
2411s tests/io/test_wannier90.py ....                                          [ 81%]
2411s tests/io/test_xcrysden.py ....                                           [ 81%]
2411s tests/io/test_xr.py ..                                                   [ 81%]
2411s tests/io/test_xyz.py ........                                            [ 81%]
2413s tests/io/vasp/test_help.py ...                                           [ 81%]
2413s tests/io/vasp/test_inputs.py ........................................... [ 83%]
2416s .........................s.............                                  [ 85%]
2435s tests/io/vasp/test_optics.py ...                                         [ 85%]
2493s tests/io/vasp/test_outputs.py .......................................... [ 86%]
2546s .................................................................        [ 89%]
2546s tests/io/xtb/test_inputs.py ..                                           [ 89%]
2546s tests/optimization/test_linear_assignment.py ....                        [ 89%]
2546s tests/optimization/test_neighbors.py .                                   [ 89%]
2547s tests/phonon/test_bandstructure.py ...........                           [ 89%]
2547s tests/phonon/test_dos.py ...................                             [ 90%]
2781s tests/phonon/test_gruneisen.py ..............                            [ 91%]
2781s tests/phonon/test_ir_spectra.py .                                        [ 91%]
2793s tests/phonon/test_plotter.py ........                                    [ 91%]
2793s tests/phonon/test_thermal_displacements.py ..............                [ 91%]
2797s tests/symmetry/test_analyzer.py .................................        [ 93%]
2842s tests/symmetry/test_groups.py ........................                   [ 94%]
2876s tests/symmetry/test_kpath_lm.py ...                                      [ 94%]
2889s tests/symmetry/test_kpath_sc.py ..                                       [ 94%]
2889s tests/symmetry/test_kpaths.py .s                                         [ 94%]
2890s tests/symmetry/test_maggroups.py ......                                  [ 94%]
2891s tests/symmetry/test_settings.py ....                                     [ 94%]
2891s tests/symmetry/test_site_symmetries.py .                                 [ 94%]
2891s tests/test_pkg.py s                                                      [ 94%]
2892s tests/transformations/test_advanced_transformations.py .s..sssss..ssssss [ 95%]
2945s ss...ssssss....s                                                         [ 95%]
2946s tests/transformations/test_site_transformations.py ...........s......    [ 96%]
2946s tests/transformations/test_standard_transformations.py ............ssss. [ 97%]
2949s ...........                                                              [ 97%]
2949s tests/util/test_coord.py ......................                          [ 98%]
2949s tests/util/test_graph_hashing.py ..                                      [ 98%]
2949s tests/util/test_io.py .                                                  [ 98%]
2949s tests/util/test_misc.py ......                                           [ 98%]
2949s tests/util/test_num.py .                                                 [ 98%]
2950s tests/util/test_plotting.py ..                                           [ 98%]
2950s tests/util/test_provenance.py ........                                   [ 99%]
2950s tests/util/test_string.py ...........                                    [ 99%]
2950s tests/util/test_typing.py .....                                          [ 99%]
2950s tests/vis/test_plotters.py ...                                           [100%]
2950s 
2950s ============================= slowest 30 durations =============================
2950s 52.37s call     tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell
2950s 43.49s call     tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods
2950s 32.76s call     tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation
2950s 27.50s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot
2950s 25.44s call     tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10
2950s 22.30s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack
2950s 20.88s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen
2950s 20.78s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp
2950s 20.41s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos
2950s 20.18s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict
2950s 20.12s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi
2950s 19.94s call     tests/ext/test_optimade.py::TestOptimade::test_update_aliases
2950s 18.82s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos
2950s 18.78s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy
2950s 18.72s call     tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter
2950s 18.46s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies
2950s 18.30s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen
2950s 18.19s call     tests/io/vasp/test_optics.py::TestVasprun::test_optics
2950s 17.64s call     tests/core/test_surface.py::TestSlab::test_symmetrization
2950s 15.52s call     tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab
2950s 14.47s call     tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops
2950s 13.54s call     tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation
2950s 13.40s call     tests/io/vasp/test_outputs.py::TestVasprun::test_runtype
2950s 13.20s call     tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states
2950s 13.02s call     tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number
2950s 12.02s call     tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress
2950s 11.87s call     tests/core/test_trajectory.py::TestTrajectory::test_xdatcar_write
2950s 11.69s call     tests/core/test_trajectory.py::TestTrajectory::test_extend
2950s 11.36s call     tests/symmetry/test_groups.py::TestSpaceGroup::test_point_group_is_set
2950s 10.83s call     tests/core/test_surface.py::TestSlab::test_get_symmetric_sites
2950s =========================== short test summary info ============================
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2
2950s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down
2950s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff'
2950s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml'
2950s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed
2950s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed
2950s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this
2950s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this
2950s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:263: enumlib not present
2950s SKIPPED [1] tests/analysis/test_graphs.py:347: graphviz executables not present
2950s SKIPPED [1] tests/analysis/test_local_env.py:1355: critic2 executable not present
2950s SKIPPED [1] tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this
2950s SKIPPED [1] tests/analysis/test_surface_analysis.py:263: TODO: need someone to fix this
2950s SKIPPED [1] tests/analysis/test_surface_analysis.py:270: TODO: need someone to fix this
2950s SKIPPED [1] tests/analysis/test_surface_analysis.py:278: TODO: need someone to fix this
2950s SKIPPED [1] tests/analysis/test_surface_analysis.py:256: TODO: need someone to fix this
2950s SKIPPED [1] tests/analysis/test_surface_analysis.py:286: TODO: need someone to fix this
2950s SKIPPED [1] tests/command_line/test_bader_caller.py:119: bader executable not present
2950s SKIPPED [1] tests/command_line/test_bader_caller.py:84: bader executable not present
2950s SKIPPED [1] tests/command_line/test_bader_caller.py:66: bader executable not present
2950s SKIPPED [1] tests/command_line/test_bader_caller.py:134: bader executable not present
2950s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present
2950s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present
2950s SKIPPED [1] tests/command_line/test_enumlib_caller.py:92: enum_lib not present.
2950s SKIPPED [1] tests/command_line/test_enumlib_caller.py:80: enum_lib not present.
2950s SKIPPED [1] tests/command_line/test_enumlib_caller.py:122: enum_lib not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:74: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:181: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:148: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:236: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:272: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:139: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:144: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:135: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:130: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:126: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:283: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:320: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:332: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:345: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:352: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:363: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:359: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:383: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:373: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:379: gulp not present.
2950s SKIPPED [1] tests/command_line/test_gulp_caller.py:386: gulp not present.
2950s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present
2950s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present
2950s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present
2950s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present
2950s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present
2950s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present
2950s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present
2950s SKIPPED [1] tests/command_line/test_vampire_caller.py:34: vampire executable not present
2950s SKIPPED [1] tests/core/test_structure.py:712: Only run this in CI tests
2950s SKIPPED [1] tests/core/test_structure.py:105: enumlib or mcsqs executable not present
2950s SKIPPED [1] tests/core/test_structure.py:1832: chgnet is failing with Numpy 1, see #3992
2950s SKIPPED [1] tests/core/test_structure.py:1904: TODO: #3958 wait for matgl resolve of torch dependency
2950s SKIPPED [1] tests/core/test_structure.py:985: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR.
2950s SKIPPED [1] tests/core/test_structure.py:1807: chgnet is failing with Numpy 1, see #3992
2950s SKIPPED [1] tests/core/test_structure.py:1916: TODO: #3958 wait for matgl resolve of torch dependency
2950s SKIPPED [1] tests/core/test_structure.py:1927: TODO: #3958 wait for matgl resolve of torch dependency
2950s SKIPPED [1] tests/core/test_structure.py:1936: TODO: #3958 wait for matgl resolve of torch dependency
2950s SKIPPED [1] tests/core/test_structure.py:2567: could not import 'tblite': No module named 'tblite'
2950s SKIPPED [1] tests/core/test_structure.py:2575: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060
2950s SKIPPED [1] tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily
2950s SKIPPED [1] tests/core/test_xcfunc.py:56: TODO:
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:252: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:219: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:239: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:167: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:197: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:230: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:99: No FDINT
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:121: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:201: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:130: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:114: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:84: No FDINT
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:205: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:139: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:155: No x_trans.
2950s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:41: No x_trans.
2950s SKIPPED [19] tests/electronic_structure/test_plotter.py: No x_trans executable found
2950s SKIPPED [1] tests/io/exciting/test_inputs.py:136: inconsistent data
2950s SKIPPED [1] tests/io/test_cif.py:292: non-free PF*.cif test files are not available
2950s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded.
2950s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded.
2950s SKIPPED [1] tests/io/vasp/test_inputs.py:1469: TODO: need someone to fix this
2950s SKIPPED [1] tests/symmetry/test_kpaths.py:21: No seek path present.
2950s SKIPPED [1] tests/test_pkg.py:11: SRC_TXT_PATH='src/pymatgen.egg-info/SOURCES.txt' not found. Run `pip install .` to create
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:97: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:158: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:188: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:203: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:229: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:241: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:356: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:296: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:334: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:326: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:344: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:484: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:532: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:541: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:599: mcsqs not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:609: mcsqs not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:630: mcsqs not present.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:662: icet not installed.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:648: icet not installed.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:673: icet not installed.
2950s SKIPPED [1] tests/transformations/test_advanced_transformations.py:866: hiphive not present
2950s SKIPPED [1] tests/transformations/test_site_transformations.py:213: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_standard_transformations.py:227: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_standard_transformations.py:244: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_standard_transformations.py:262: enum_lib not present.
2950s SKIPPED [1] tests/transformations/test_standard_transformations.py:268: enum_lib not present.
2950s ======== 2531 passed, 142 skipped, 286 deselected in 1409.07s (0:23:29) ========
2950s ..tot conformations = 3
2950s ..tot confs tested = 3
2950s ..below energy threshold = 3
2954s autopkgtest [15:03:12]: test test-pymatgen: -----------------------]
2955s test-pymatgen        PASS
2955s autopkgtest [15:03:13]: test test-pymatgen:  - - - - - - - - - - results - - - - - - - - - -
2955s autopkgtest [15:03:13]: test test-pymatgen-net: preparing testbed
3056s autopkgtest [15:04:54]: testbed dpkg architecture: amd64
3056s autopkgtest [15:04:54]: testbed apt version: 2.9.28
3056s autopkgtest [15:04:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup
3057s autopkgtest [15:04:55]: testbed release detected to be: plucky
3057s autopkgtest [15:04:55]: updating testbed package index (apt update)
3058s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
3058s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
3058s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
3058s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
3058s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [60.6 kB]
3058s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
3058s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [811 kB]
3058s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [18.9 kB]
3058s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [66.0 kB]
3058s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [85.8 kB]
3058s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B]
3058s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B]
3058s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [831 kB]
3058s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [286 kB]
3058s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [12.2 kB]
3058s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3520 B]
3059s Fetched 2299 kB in 1s (2464 kB/s)
3059s Reading package lists...
3060s Reading package lists...
3060s Building dependency tree...
3060s Reading state information...
3061s Calculating upgrade...
3061s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
3061s Reading package lists...
3061s Building dependency tree...
3061s Reading state information...
3062s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
3062s autopkgtest [15:05:00]: upgrading testbed (apt dist-upgrade and autopurge)
3062s Reading package lists...
3062s Building dependency tree...
3062s Reading state information...
3062s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
3063s Starting 2 pkgProblemResolver with broken count: 0
3063s Done
3063s Entering ResolveByKeep
3064s 
3064s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
3064s Reading package lists...
3064s Building dependency tree...
3064s Reading state information...
3065s Starting pkgProblemResolver with broken count: 0
3065s Starting 2 pkgProblemResolver with broken count: 0
3065s Done
3065s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
3068s Reading package lists...
3068s Building dependency tree...
3068s Reading state information...
3068s Starting pkgProblemResolver with broken count: 0
3068s Starting 2 pkgProblemResolver with broken count: 0
3068s Done
3069s The following NEW packages will be installed:
3069s   autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
3069s   cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit
3069s   dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz
3069s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
3069s   fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx
3069s   fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
3069s   gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian
3069s   libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3
3069s   libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0
3069s   libdouble-conversion3 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1
3069s   libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1
3069s   libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev
3069s   libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2
3069s   libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b
3069s   libhdf5-310 libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0
3069s   libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libimagequant0
3069s   libinchi1.07 libinput-bin libinput10 libisl23 libitm1 libjbig0
3069s   libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui
3069s   libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26
3069s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 liblsan0 liblzf1
3069s   libmaeparser1 libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnetcdf19t64 libogg0
3069s   libopenbabel7 libopengl0 libopenjp2-7 libopenmpi40 libpciaccess0
3069s   libpcre2-16-0 libpixman-1-0 libpmix2t64 libproj25 libpsm-infinipath1
3069s   libpsm2-2 libpython3-all-dev libpython3-dev libpython3.12-dev
3069s   libpython3.13-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64
3069s   libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0 librdmacm1t64
3069s   libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2 libtbb12
3069s   libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6
3069s   libtk8.6 libtool libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt
3069s   libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0
3069s   libwebp7 libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0
3069s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
3069s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
3069s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
3069s   libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1
3069s   libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1
3069s   openmpi-bin openmpi-common packmol po-debconf proj-data
3069s   pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data
3069s   python-pymatgen-doc python3-alabaster python3-all python3-all-dev
3069s   python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson
3069s   python3-build python3-cftime python3-contourpy python3-cycler
3069s   python3-dateutil python3-decorator python3-defusedxml python3-dev
3069s   python3-dnspython python3-docutils python3-email-validator
3069s   python3-fastjsonschema python3-fonttools python3-frozendict python3-fs
3069s   python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig
3069s   python3-installer python3-joblib python3-jupyter-core python3-kiwisolver
3069s   python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty
3069s   python3-mpi4py python3-mpmath python3-nbformat python3-netcdf4
3069s   python3-networkx python3-numpy python3-openbabel python3-packaging
3069s   python3-palettable python3-pandas python3-pandas-lib python3-phonopy
3069s   python3-pil python3-pil.imagetk python3-platformdirs python3-plotly
3069s   python3-pluggy python3-pybtex python3-pydantic python3-pydantic-core
3069s   python3-pymatgen python3-pyproject-hooks python3-pytest python3-pytz
3069s   python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy
3069s   python3-six python3-snowballstemmer python3-soupsieve python3-spglib
3069s   python3-sphinx python3-sphinx-rtd-theme python3-sphinxcontrib.jquery
3069s   python3-sympy python3-tabulate python3-tenacity python3-tk python3-toml
3069s   python3-tqdm python3-traitlets python3-tz python3-ufolib2
3069s   python3-uncertainties python3-unicodedata2 python3-vtk9 python3-wheel
3069s   python3.12 python3.12-dev python3.12-minimal python3.12-tk python3.13-dev
3069s   python3.13-tk sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5
3069s   unicode-data x11-common xml-core zlib1g-dev
3071s 0 upgraded, 301 newly installed, 0 to remove and 0 not upgraded.
3071s Need to get 556 MB of archives.
3071s After this operation, 2188 MB of additional disk space will be used.
3071s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB]
3071s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB]
3071s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB]
3071s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB]
3072s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-5 [263 kB]
3072s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB]
3072s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB]
3072s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3 [572 kB]
3072s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB]
3072s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
3072s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
3072s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
3072s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB]
3072s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB]
3072s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
3072s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
3072s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
3072s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
3072s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
3072s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB]
3072s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B]
3072s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
3072s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
3072s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-16ubuntu1 [11.9 MB]
3072s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-16ubuntu1 [1032 B]
3072s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
3072s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
3072s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-16ubuntu1 [47.6 kB]
3072s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-16ubuntu1 [148 kB]
3072s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-16ubuntu1 [29.0 kB]
3072s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-16ubuntu1 [2998 kB]
3072s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-16ubuntu1 [1317 kB]
3072s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-16ubuntu1 [2733 kB]
3073s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-16ubuntu1 [1177 kB]
3073s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-16ubuntu1 [1634 kB]
3073s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-16ubuntu1 [153 kB]
3073s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-16ubuntu1 [2814 kB]
3073s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-16ubuntu1 [23.3 MB]
3073s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-16ubuntu1 [535 kB]
3073s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
3073s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
3073s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-16ubuntu1 [2507 kB]
3073s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-16ubuntu1 [13.4 MB]
3074s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-16ubuntu1 [21.5 kB]
3074s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
3074s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
3074s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
3074s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu1 [3370 kB]
3074s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
3074s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-3build1 [168 kB]
3074s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB]
3074s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
3074s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
3074s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B]
3074s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB]
3074s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB]
3074s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB]
3074s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
3074s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
3074s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB]
3074s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250108 [117 kB]
3074s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB]
3074s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB]
3074s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
3074s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
3074s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
3074s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB]
3074s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
3074s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
3074s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-20 [26.0 MB]
3075s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB]
3075s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB]
3075s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB]
3075s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB]
3075s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
3075s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4ubuntu2 [260 kB]
3075s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
3075s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
3075s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
3075s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
3075s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
3075s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB]
3075s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB]
3075s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB]
3075s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB]
3075s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-1 [36.6 kB]
3075s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.3.4-3ubuntu1 [42.9 kB]
3075s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B]
3075s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B]
3075s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B]
3075s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB]
3075s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B]
3076s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB]
3076s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B]
3076s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.3.4-3ubuntu1 [11.9 MB]
3076s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.3.4-3ubuntu1 [33.3 kB]
3076s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-1 [29.1 kB]
3076s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.3.4-3ubuntu1 [136 kB]
3076s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B]
3076s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB]
3076s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB]
3076s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB]
3076s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 55.0-1ubuntu1 [71.5 kB]
3076s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB]
3076s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-16ubuntu1 [910 kB]
3077s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB]
3077s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.3.4-3ubuntu1 [34.7 kB]
3077s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB]
3077s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB]
3077s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
3077s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.3.4-3ubuntu1 [146 kB]
3077s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB]
3077s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB]
3077s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB]
3077s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB]
3077s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
3077s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
3077s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
3077s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
3077s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
3077s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1build1 [193 kB]
3077s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
3077s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
3077s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1.07 amd64 1.07.2+dfsg-1 [702 kB]
3077s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.14.0-1 [103 kB]
3077s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB]
3077s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB]
3077s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB]
3077s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.27.1-1 [155 kB]
3077s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
3077s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
3077s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
3077s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
3077s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
3077s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
3077s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.9 kB]
3077s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB]
3077s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB]
3077s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
3077s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
3077s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
3077s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
3077s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
3077s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB]
3077s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB]
3077s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB]
3077s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB]
3077s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB]
3077s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB]
3077s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB]
3077s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB]
3077s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1build1 [16.0 kB]
3077s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.6-3 [714 kB]
3077s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 55.0-1ubuntu1 [29.7 kB]
3077s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 55.0-1ubuntu1 [42.7 kB]
3077s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB]
3077s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi40 amd64 5.0.6-4 [2523 kB]
3077s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB]
3077s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB]
3078s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
3078s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
3078s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
3078s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
3078s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB]
3078s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
3078s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.2-1 [5501 kB]
3078s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.13.1-1~exp2 [10.5 kB]
3078s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.9-1 [5702 kB]
3078s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.13.1-1~exp2 [922 B]
3078s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
3078s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu2 [2037 kB]
3079s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu2 [221 kB]
3079s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB]
3079s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu2 [724 kB]
3079s Get:175 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
3079s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB]
3079s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB]
3079s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB]
3079s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B]
3079s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB]
3079s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B]
3079s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B]
3079s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB]
3079s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB]
3079s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB]
3079s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu2 [3790 kB]
3079s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu2 [2560 kB]
3079s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB]
3079s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.5.0-1ubuntu2 [251 kB]
3079s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2022.0.0-1 [55.6 kB]
3079s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2022.0.0-1 [15.7 kB]
3079s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2022.0.0-1 [102 kB]
3079s Get:193 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-5 [70.2 kB]
3079s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-5 [115 kB]
3079s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB]
3079s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-1.1ubuntu3 [25.3 MB]
3080s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-1.1ubuntu3 [182 kB]
3080s Get:198 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB]
3080s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB]
3080s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB]
3080s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 5.0.6-4 [97.7 kB]
3080s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 5.0.6-4 [191 kB]
3080s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 packmol amd64 1:20.15.3-1 [135 kB]
3080s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB]
3080s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
3080s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB]
3080s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB]
3080s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB]
3081s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
3081s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20250108 [1726 B]
3081s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymatgen-test-files all 2024.10.29-1 [213 MB]
3091s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB]
3091s Get:213 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
3091s Get:214 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB]
3091s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-pymatgen-doc all 2024.10.29+dfsg1-5 [1129 kB]
3091s Get:216 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B]
3091s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.2-1 [508 kB]
3091s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.13.1-1~exp2 [26.7 kB]
3091s Get:219 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.9-1 [505 kB]
3091s Get:220 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.13.1-1~exp2 [918 B]
3091s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB]
3091s Get:222 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [5319 kB]
3091s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
3091s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu1 [22.3 MB]
3093s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.5.0-1ubuntu2 [31.7 kB]
3093s Get:226 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB]
3093s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB]
3093s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5 [589 kB]
3093s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB]
3093s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-1 [107 kB]
3093s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B]
3093s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5 [9936 B]
3093s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1 [271 kB]
3093s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
3093s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB]
3093s Get:236 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB]
3093s Get:237 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B]
3093s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB]
3093s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-6 [90.7 kB]
3093s Get:240 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB]
3093s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1 [27.4 kB]
3093s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
3093s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB]
3093s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
3093s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB]
3093s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
3093s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2 [1755 kB]
3094s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3 [70.4 kB]
3094s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu2 [4697 kB]
3094s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ase all 3.23.0-1ubuntu1 [1754 kB]
3094s Get:251 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB]
3094s Get:252 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.13.3-1 [136 kB]
3094s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.10.1-5 [42.8 kB]
3094s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1build2 [346 kB]
3094s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB]
3094s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB]
3094s Get:257 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 5.0-1 [10.3 kB]
3094s Get:258 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB]
3094s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB]
3094s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB]
3094s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-frozendict all 1.2-3 [4906 B]
3094s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.12.1-1 [1677 kB]
3094s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.12.1-1 [7970 B]
3094s Get:264 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B]
3094s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
3094s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-6 [206 kB]
3094s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB]
3094s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB]
3094s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB]
3094s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [8248 kB]
3095s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8 [3112 kB]
3095s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.27.2-1 [1860 kB]
3095s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB]
3095s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB]
3095s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1 [218 kB]
3095s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB]
3095s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2025.1.9-1 [40.1 kB]
3095s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB]
3095s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1build2 [942 kB]
3095s Get:280 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
3096s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB]
3096s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB]
3096s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-phonopy amd64 2.35.0-1 [325 kB]
3096s Get:284 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB]
3096s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB]
3096s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
3096s Get:287 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB]
3096s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB]
3096s Get:289 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB]
3096s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB]
3096s Get:291 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pymatgen amd64 2024.10.29+dfsg1-5 [2670 kB]
3096s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB]
3096s Get:293 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
3096s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 8.1.3-4 [663 kB]
3096s Get:295 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB]
3096s Get:296 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 8.1.3-4 [474 kB]
3096s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B]
3096s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB]
3096s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.18 [2510 B]
3096s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpi4py amd64 4.0.1-6ubuntu1 [1098 kB]
3096s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-1.1ubuntu3 [7840 kB]
3097s Fetched 556 MB in 27s (20.4 MB/s)
3097s Selecting previously unselected package python3.12-minimal.
3098s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 108914 files and directories currently installed.)
3098s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_amd64.deb ...
3098s Unpacking python3.12-minimal (3.12.9-1) ...
3098s Selecting previously unselected package fonts-lato.
3098s Preparing to unpack .../001-fonts-lato_2.015-1_all.deb ...
3098s Unpacking fonts-lato (2.015-1) ...
3098s Selecting previously unselected package sgml-base.
3098s Preparing to unpack .../002-sgml-base_1.31_all.deb ...
3098s Unpacking sgml-base (1.31) ...
3098s Selecting previously unselected package python3.12.
3098s Preparing to unpack .../003-python3.12_3.12.9-1_amd64.deb ...
3098s Unpacking python3.12 (3.12.9-1) ...
3098s Selecting previously unselected package m4.
3098s Preparing to unpack .../004-m4_1.4.19-5_amd64.deb ...
3098s Unpacking m4 (1.4.19-5) ...
3098s Selecting previously unselected package autoconf.
3098s Preparing to unpack .../005-autoconf_2.72-3_all.deb ...
3098s Unpacking autoconf (2.72-3) ...
3098s Selecting previously unselected package autotools-dev.
3098s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ...
3098s Unpacking autotools-dev (20220109.1) ...
3098s Selecting previously unselected package automake.
3098s Preparing to unpack .../007-automake_1%3a1.17-3_all.deb ...
3098s Unpacking automake (1:1.17-3) ...
3098s Selecting previously unselected package autopoint.
3098s Preparing to unpack .../008-autopoint_0.23.1-1_all.deb ...
3098s Unpacking autopoint (0.23.1-1) ...
3098s Selecting previously unselected package libtcl8.6:amd64.
3098s Preparing to unpack .../009-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
3098s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
3098s Selecting previously unselected package fonts-dejavu-mono.
3098s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ...
3098s Unpacking fonts-dejavu-mono (2.37-8) ...
3098s Selecting previously unselected package fonts-dejavu-core.
3098s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ...
3099s Unpacking fonts-dejavu-core (2.37-8) ...
3099s Selecting previously unselected package fontconfig-config.
3099s Preparing to unpack .../012-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ...
3099s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
3099s Selecting previously unselected package libfontconfig1:amd64.
3099s Preparing to unpack .../013-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ...
3099s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
3099s Selecting previously unselected package libxrender1:amd64.
3099s Preparing to unpack .../014-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
3099s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
3099s Selecting previously unselected package libxft2:amd64.
3099s Preparing to unpack .../015-libxft2_2.3.6-1build1_amd64.deb ...
3099s Unpacking libxft2:amd64 (2.3.6-1build1) ...
3099s Selecting previously unselected package x11-common.
3099s Preparing to unpack .../016-x11-common_1%3a7.7+23ubuntu3_all.deb ...
3099s Unpacking x11-common (1:7.7+23ubuntu3) ...
3099s Selecting previously unselected package libxss1:amd64.
3099s Preparing to unpack .../017-libxss1_1%3a1.2.3-1build3_amd64.deb ...
3099s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
3099s Selecting previously unselected package libtk8.6:amd64.
3099s Preparing to unpack .../018-libtk8.6_8.6.16-1_amd64.deb ...
3099s Unpacking libtk8.6:amd64 (8.6.16-1) ...
3099s Selecting previously unselected package tk8.6-blt2.5.
3099s Preparing to unpack .../019-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ...
3099s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
3099s Selecting previously unselected package blt.
3099s Preparing to unpack .../020-blt_2.5.3+dfsg-7build1_amd64.deb ...
3099s Unpacking blt (2.5.3+dfsg-7build1) ...
3099s Selecting previously unselected package libisl23:amd64.
3099s Preparing to unpack .../021-libisl23_0.27-1_amd64.deb ...
3099s Unpacking libisl23:amd64 (0.27-1) ...
3099s Selecting previously unselected package libmpc3:amd64.
3099s Preparing to unpack .../022-libmpc3_1.3.1-1build2_amd64.deb ...
3099s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
3099s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
3099s Preparing to unpack .../023-cpp-14-x86-64-linux-gnu_14.2.0-16ubuntu1_amd64.deb ...
3099s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
3099s Selecting previously unselected package cpp-14.
3099s Preparing to unpack .../024-cpp-14_14.2.0-16ubuntu1_amd64.deb ...
3099s Unpacking cpp-14 (14.2.0-16ubuntu1) ...
3099s Selecting previously unselected package cpp-x86-64-linux-gnu.
3100s Preparing to unpack .../025-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
3100s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
3100s Selecting previously unselected package cpp.
3100s Preparing to unpack .../026-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
3100s Unpacking cpp (4:14.2.0-1ubuntu1) ...
3100s Selecting previously unselected package libcc1-0:amd64.
3100s Preparing to unpack .../027-libcc1-0_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libcc1-0:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libgomp1:amd64.
3100s Preparing to unpack .../028-libgomp1_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libgomp1:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libitm1:amd64.
3100s Preparing to unpack .../029-libitm1_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libitm1:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libasan8:amd64.
3100s Preparing to unpack .../030-libasan8_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libasan8:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package liblsan0:amd64.
3100s Preparing to unpack .../031-liblsan0_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking liblsan0:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libtsan2:amd64.
3100s Preparing to unpack .../032-libtsan2_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libtsan2:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libubsan1:amd64.
3100s Preparing to unpack .../033-libubsan1_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libubsan1:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libhwasan0:amd64.
3100s Preparing to unpack .../034-libhwasan0_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libhwasan0:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libquadmath0:amd64.
3100s Preparing to unpack .../035-libquadmath0_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libquadmath0:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package libgcc-14-dev:amd64.
3100s Preparing to unpack .../036-libgcc-14-dev_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking libgcc-14-dev:amd64 (14.2.0-16ubuntu1) ...
3100s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
3100s Preparing to unpack .../037-gcc-14-x86-64-linux-gnu_14.2.0-16ubuntu1_amd64.deb ...
3100s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
3101s Selecting previously unselected package gcc-14.
3101s Preparing to unpack .../038-gcc-14_14.2.0-16ubuntu1_amd64.deb ...
3101s Unpacking gcc-14 (14.2.0-16ubuntu1) ...
3101s Selecting previously unselected package gcc-x86-64-linux-gnu.
3101s Preparing to unpack .../039-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
3101s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
3101s Selecting previously unselected package gcc.
3101s Preparing to unpack .../040-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
3101s Unpacking gcc (4:14.2.0-1ubuntu1) ...
3101s Selecting previously unselected package libstdc++-14-dev:amd64.
3101s Preparing to unpack .../041-libstdc++-14-dev_14.2.0-16ubuntu1_amd64.deb ...
3101s Unpacking libstdc++-14-dev:amd64 (14.2.0-16ubuntu1) ...
3101s Selecting previously unselected package g++-14-x86-64-linux-gnu.
3101s Preparing to unpack .../042-g++-14-x86-64-linux-gnu_14.2.0-16ubuntu1_amd64.deb ...
3101s Unpacking g++-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
3101s Selecting previously unselected package g++-14.
3101s Preparing to unpack .../043-g++-14_14.2.0-16ubuntu1_amd64.deb ...
3101s Unpacking g++-14 (14.2.0-16ubuntu1) ...
3101s Selecting previously unselected package g++-x86-64-linux-gnu.
3101s Preparing to unpack .../044-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
3101s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
3101s Selecting previously unselected package g++.
3101s Preparing to unpack .../045-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
3101s Unpacking g++ (4:14.2.0-1ubuntu1) ...
3101s Selecting previously unselected package build-essential.
3101s Preparing to unpack .../046-build-essential_12.10ubuntu1_amd64.deb ...
3101s Unpacking build-essential (12.10ubuntu1) ...
3101s Selecting previously unselected package cython3.
3101s Preparing to unpack .../047-cython3_3.0.11+dfsg-2ubuntu1_amd64.deb ...
3101s Unpacking cython3 (3.0.11+dfsg-2ubuntu1) ...
3101s Selecting previously unselected package libdebhelper-perl.
3101s Preparing to unpack .../048-libdebhelper-perl_13.24.1ubuntu2_all.deb ...
3101s Unpacking libdebhelper-perl (13.24.1ubuntu2) ...
3101s Selecting previously unselected package libtool.
3102s Preparing to unpack .../049-libtool_2.5.4-3build1_all.deb ...
3102s Unpacking libtool (2.5.4-3build1) ...
3102s Selecting previously unselected package dh-autoreconf.
3102s Preparing to unpack .../050-dh-autoreconf_20_all.deb ...
3102s Unpacking dh-autoreconf (20) ...
3102s Selecting previously unselected package libarchive-zip-perl.
3102s Preparing to unpack .../051-libarchive-zip-perl_1.68-1_all.deb ...
3102s Unpacking libarchive-zip-perl (1.68-1) ...
3102s Selecting previously unselected package libfile-stripnondeterminism-perl.
3102s Preparing to unpack .../052-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
3102s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
3102s Selecting previously unselected package dh-strip-nondeterminism.
3102s Preparing to unpack .../053-dh-strip-nondeterminism_1.14.1-2_all.deb ...
3102s Unpacking dh-strip-nondeterminism (1.14.1-2) ...
3102s Selecting previously unselected package debugedit.
3102s Preparing to unpack .../054-debugedit_1%3a5.1-2_amd64.deb ...
3102s Unpacking debugedit (1:5.1-2) ...
3102s Selecting previously unselected package dwz.
3102s Preparing to unpack .../055-dwz_0.15-1build6_amd64.deb ...
3102s Unpacking dwz (0.15-1build6) ...
3102s Selecting previously unselected package gettext.
3102s Preparing to unpack .../056-gettext_0.23.1-1_amd64.deb ...
3102s Unpacking gettext (0.23.1-1) ...
3102s Selecting previously unselected package intltool-debian.
3102s Preparing to unpack .../057-intltool-debian_0.35.0+20060710.6_all.deb ...
3102s Unpacking intltool-debian (0.35.0+20060710.6) ...
3102s Selecting previously unselected package po-debconf.
3102s Preparing to unpack .../058-po-debconf_1.0.21+nmu1_all.deb ...
3102s Unpacking po-debconf (1.0.21+nmu1) ...
3102s Selecting previously unselected package debhelper.
3102s Preparing to unpack .../059-debhelper_13.24.1ubuntu2_all.deb ...
3102s Unpacking debhelper (13.24.1ubuntu2) ...
3102s Selecting previously unselected package dh-python.
3102s Preparing to unpack .../060-dh-python_6.20250108_all.deb ...
3102s Unpacking dh-python (6.20250108) ...
3102s Selecting previously unselected package xml-core.
3102s Preparing to unpack .../061-xml-core_0.19_all.deb ...
3102s Unpacking xml-core (0.19) ...
3102s Selecting previously unselected package docutils-common.
3102s Preparing to unpack .../062-docutils-common_0.21.2+dfsg-2_all.deb ...
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3103s Selecting previously unselected package libaec0:amd64.
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3103s Selecting previously unselected package libhsakmt1:amd64.
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3104s Selecting previously unselected package libboost-iostreams1.83.0:amd64.
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3104s Selecting previously unselected package libpixman-1-0:amd64.
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3104s Selecting previously unselected package libpciaccess0:amd64.
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3104s Selecting previously unselected package libdrm-intel1:amd64.
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3104s Selecting previously unselected package libwayland-server0:amd64.
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3104s Selecting previously unselected package libglapi-mesa:amd64.
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3104s Selecting previously unselected package libxcb-randr0:amd64.
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3104s Selecting previously unselected package libxcb-xfixes0:amd64.
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3104s Selecting previously unselected package libxshmfence1:amd64.
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3104s Selecting previously unselected package mesa-libgallium:amd64.
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3105s Selecting previously unselected package libwayland-client0:amd64.
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3105s Selecting previously unselected package libegl-mesa0:amd64.
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3105s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64.
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3105s Selecting previously unselected package libexpat1-dev:amd64.
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3105s Selecting previously unselected package libpsm-infinipath1.
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3105s Selecting previously unselected package libpsm2-2.
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3105s Selecting previously unselected package librdmacm1t64:amd64.
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3105s Selecting previously unselected package libfabric1:amd64.
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3105s Selecting previously unselected package libgfortran5:amd64.
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3105s Selecting previously unselected package libvulkan1:amd64.
3105s Preparing to unpack .../105-libvulkan1_1.4.304.0-1_amd64.deb ...
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3105s Selecting previously unselected package libgl1-mesa-dri:amd64.
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3105s Selecting previously unselected package libglvnd0:amd64.
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3105s Selecting previously unselected package libxcb-glx0:amd64.
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3105s Selecting previously unselected package libxxf86vm1:amd64.
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3105s Selecting previously unselected package libglx-mesa0:amd64.
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3105s Selecting previously unselected package libglx0:amd64.
3105s Preparing to unpack .../111-libglx0_1.7.0-1build1_amd64.deb ...
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3105s Selecting previously unselected package libgl1:amd64.
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3105s Selecting previously unselected package libgl2ps1.4.
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3105s Selecting previously unselected package libglew2.2:amd64.
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3105s Selecting previously unselected package libgraphite2-3:amd64.
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3105s Selecting previously unselected package libharfbuzz0b:amd64.
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3106s Selecting previously unselected package libsz2:amd64.
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3106s Selecting previously unselected package libhdf5-310:amd64.
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3106s Selecting previously unselected package libhwloc15:amd64.
3106s Preparing to unpack .../120-libhwloc15_2.11.2-1build1_amd64.deb ...
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3106s Selecting previously unselected package libice6:amd64.
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3106s Selecting previously unselected package libinchi1.07.
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3106s Selecting previously unselected package libwacom-common.
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3106s Selecting previously unselected package libwacom9:amd64.
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3106s Selecting previously unselected package libmtdev1t64:amd64.
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3106s Selecting previously unselected package libinput10:amd64.
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3106s Selecting previously unselected package libjpeg-turbo8:amd64.
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3106s Selecting previously unselected package libjs-bootstrap.
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3106s Selecting previously unselected package libjs-sphinxdoc.
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3106s Selecting previously unselected package libjsoncpp26:amd64.
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3106s Selecting previously unselected package liblapack3:amd64.
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3107s Selecting previously unselected package liblbfgsb0:amd64.
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3107s Selecting previously unselected package liblcms2-2:amd64.
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3107s Selecting previously unselected package liblerc4:amd64.
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3107s Selecting previously unselected package liblzf1:amd64.
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3107s Selecting previously unselected package libmaeparser1:amd64.
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3107s Selecting previously unselected package libmd4c0:amd64.
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3107s Selecting previously unselected package libnetcdf19t64:amd64.
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3107s Selecting previously unselected package libogg0:amd64.
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3107s Selecting previously unselected package libmunge2:amd64.
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3107s Selecting previously unselected package libxnvctrl0:amd64.
3107s Preparing to unpack .../149-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ...
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3107s Selecting previously unselected package ocl-icd-libopencl1:amd64.
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3107s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ...
3107s Selecting previously unselected package libhwloc-plugins:amd64.
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3107s Selecting previously unselected package libpmix2t64:amd64.
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3107s Selecting previously unselected package libibumad3:amd64.
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3107s Selecting previously unselected package libibmad5:amd64.
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3107s Selecting previously unselected package libucx0:amd64.
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3107s Selecting previously unselected package libopenmpi40:amd64.
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3107s Selecting previously unselected package libpcre2-16-0:amd64.
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3107s Selecting previously unselected package proj-data.
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3108s Selecting previously unselected package libjbig0:amd64.
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3108s Selecting previously unselected package libsharpyuv0:amd64.
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3108s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
3108s Selecting previously unselected package libwebp7:amd64.
3108s Preparing to unpack .../161-libwebp7_1.5.0-0.1_amd64.deb ...
3108s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
3108s Selecting previously unselected package libtiff6:amd64.
3108s Preparing to unpack .../162-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
3108s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
3108s Selecting previously unselected package libproj25:amd64.
3108s Preparing to unpack .../163-libproj25_9.5.1-1_amd64.deb ...
3108s Unpacking libproj25:amd64 (9.5.1-1) ...
3108s Selecting previously unselected package zlib1g-dev:amd64.
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3108s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
3108s Selecting previously unselected package libpython3.13-dev:amd64.
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3108s Selecting previously unselected package libpython3-dev:amd64.
3108s Preparing to unpack .../166-libpython3-dev_3.13.1-1~exp2_amd64.deb ...
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3108s Selecting previously unselected package libpython3.12-dev:amd64.
3108s Preparing to unpack .../167-libpython3.12-dev_3.12.9-1_amd64.deb ...
3108s Unpacking libpython3.12-dev:amd64 (3.12.9-1) ...
3108s Selecting previously unselected package libpython3-all-dev:amd64.
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3108s Unpacking libpython3-all-dev:amd64 (3.13.1-1~exp2) ...
3108s Selecting previously unselected package libqhull-r8.0:amd64.
3108s Preparing to unpack .../169-libqhull-r8.0_2020.2-6build1_amd64.deb ...
3108s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ...
3108s Selecting previously unselected package libqt5core5t64:amd64.
3108s Preparing to unpack .../170-libqt5core5t64_5.15.15+dfsg-1ubuntu2_amd64.deb ...
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3109s Selecting previously unselected package libqt5dbus5t64:amd64.
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3109s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3109s Selecting previously unselected package libegl1:amd64.
3109s Preparing to unpack .../172-libegl1_1.7.0-1build1_amd64.deb ...
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3109s Selecting previously unselected package libqt5network5t64:amd64.
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3109s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3109s Selecting previously unselected package libsm6:amd64.
3109s Preparing to unpack .../174-libsm6_2%3a1.2.4-1_amd64.deb ...
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3109s Selecting previously unselected package libxcb-icccm4:amd64.
3109s Preparing to unpack .../175-libxcb-icccm4_0.4.2-1_amd64.deb ...
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3109s Selecting previously unselected package libxcb-util1:amd64.
3109s Preparing to unpack .../176-libxcb-util1_0.4.1-1_amd64.deb ...
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3109s Selecting previously unselected package libxcb-image0:amd64.
3109s Preparing to unpack .../177-libxcb-image0_0.4.0-2build1_amd64.deb ...
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3109s Selecting previously unselected package libxcb-keysyms1:amd64.
3109s Preparing to unpack .../178-libxcb-keysyms1_0.4.1-1_amd64.deb ...
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3109s Selecting previously unselected package libxcb-render-util0:amd64.
3109s Preparing to unpack .../179-libxcb-render-util0_0.3.10-1_amd64.deb ...
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3109s Selecting previously unselected package libxcb-shape0:amd64.
3109s Preparing to unpack .../180-libxcb-shape0_1.17.0-2_amd64.deb ...
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3109s Selecting previously unselected package libxcb-xinerama0:amd64.
3109s Preparing to unpack .../181-libxcb-xinerama0_1.17.0-2_amd64.deb ...
3109s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ...
3109s Selecting previously unselected package libxcb-xinput0:amd64.
3109s Preparing to unpack .../182-libxcb-xinput0_1.17.0-2_amd64.deb ...
3109s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ...
3109s Selecting previously unselected package libxcb-xkb1:amd64.
3109s Preparing to unpack .../183-libxcb-xkb1_1.17.0-2_amd64.deb ...
3109s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ...
3109s Selecting previously unselected package libxkbcommon-x11-0:amd64.
3109s Preparing to unpack .../184-libxkbcommon-x11-0_1.7.0-2_amd64.deb ...
3109s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ...
3109s Selecting previously unselected package libqt5gui5t64:amd64.
3109s Preparing to unpack .../185-libqt5gui5t64_5.15.15+dfsg-1ubuntu2_amd64.deb ...
3109s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3109s Selecting previously unselected package libqt5widgets5t64:amd64.
3109s Preparing to unpack .../186-libqt5widgets5t64_5.15.15+dfsg-1ubuntu2_amd64.deb ...
3109s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3109s Selecting previously unselected package libraqm0:amd64.
3109s Preparing to unpack .../187-libraqm0_0.10.2-1_amd64.deb ...
3109s Unpacking libraqm0:amd64 (0.10.2-1) ...
3109s Selecting previously unselected package libsymspg2:amd64.
3109s Preparing to unpack .../188-libsymspg2_2.5.0-1ubuntu2_amd64.deb ...
3109s Unpacking libsymspg2:amd64 (2.5.0-1ubuntu2) ...
3109s Selecting previously unselected package libtbbmalloc2:amd64.
3109s Preparing to unpack .../189-libtbbmalloc2_2022.0.0-1_amd64.deb ...
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3109s Selecting previously unselected package libtbbbind-2-5:amd64.
3109s Preparing to unpack .../190-libtbbbind-2-5_2022.0.0-1_amd64.deb ...
3109s Unpacking libtbbbind-2-5:amd64 (2022.0.0-1) ...
3109s Selecting previously unselected package libtbb12:amd64.
3109s Preparing to unpack .../191-libtbb12_2022.0.0-1_amd64.deb ...
3109s Unpacking libtbb12:amd64 (2022.0.0-1) ...
3109s Selecting previously unselected package libtheoradec1:amd64.
3109s Preparing to unpack .../192-libtheoradec1_1.2.0~alpha1+dfsg-5_amd64.deb ...
3109s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-5) ...
3109s Selecting previously unselected package libtheoraenc1:amd64.
3109s Preparing to unpack .../193-libtheoraenc1_1.2.0~alpha1+dfsg-5_amd64.deb ...
3109s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-5) ...
3110s Selecting previously unselected package libopengl0:amd64.
3110s Preparing to unpack .../194-libopengl0_1.7.0-1build1_amd64.deb ...
3110s Unpacking libopengl0:amd64 (1.7.0-1build1) ...
3110s Selecting previously unselected package libvtk9.3:amd64.
3110s Preparing to unpack .../195-libvtk9.3_9.3.0+dfsg1-1.1ubuntu3_amd64.deb ...
3110s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
3110s Selecting previously unselected package libvtk9.3-qt:amd64.
3110s Preparing to unpack .../196-libvtk9.3-qt_9.3.0+dfsg1-1.1ubuntu3_amd64.deb ...
3110s Unpacking libvtk9.3-qt:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
3110s Selecting previously unselected package libwebpdemux2:amd64.
3110s Preparing to unpack .../197-libwebpdemux2_1.5.0-0.1_amd64.deb ...
3110s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ...
3110s Selecting previously unselected package libwebpmux3:amd64.
3110s Preparing to unpack .../198-libwebpmux3_1.5.0-0.1_amd64.deb ...
3110s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ...
3110s Selecting previously unselected package libxslt1.1:amd64.
3110s Preparing to unpack .../199-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ...
3110s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ...
3110s Selecting previously unselected package openmpi-common.
3110s Preparing to unpack .../200-openmpi-common_5.0.6-4_all.deb ...
3110s Unpacking openmpi-common (5.0.6-4) ...
3111s Selecting previously unselected package openmpi-bin.
3111s Preparing to unpack .../201-openmpi-bin_5.0.6-4_amd64.deb ...
3111s Unpacking openmpi-bin (5.0.6-4) ...
3111s Selecting previously unselected package packmol.
3111s Preparing to unpack .../202-packmol_1%3a20.15.3-1_amd64.deb ...
3111s Unpacking packmol (1:20.15.3-1) ...
3111s Selecting previously unselected package python3-packaging.
3111s Preparing to unpack .../203-python3-packaging_24.2-1_all.deb ...
3111s Unpacking python3-packaging (24.2-1) ...
3111s Selecting previously unselected package python3-pyproject-hooks.
3111s Preparing to unpack .../204-python3-pyproject-hooks_1.2.0-1_all.deb ...
3111s Unpacking python3-pyproject-hooks (1.2.0-1) ...
3111s Selecting previously unselected package python3-toml.
3111s Preparing to unpack .../205-python3-toml_0.10.2-1_all.deb ...
3111s Unpacking python3-toml (0.10.2-1) ...
3111s Selecting previously unselected package python3-wheel.
3111s Preparing to unpack .../206-python3-wheel_0.45.1-1_all.deb ...
3111s Unpacking python3-wheel (0.45.1-1) ...
3111s Selecting previously unselected package python3-build.
3111s Preparing to unpack .../207-python3-build_1.2.2-1_all.deb ...
3111s Unpacking python3-build (1.2.2-1) ...
3111s Selecting previously unselected package python3-installer.
3111s Preparing to unpack .../208-python3-installer_0.7.0+dfsg1-3_all.deb ...
3111s Unpacking python3-installer (0.7.0+dfsg1-3) ...
3111s Selecting previously unselected package pybuild-plugin-pyproject.
3111s Preparing to unpack .../209-pybuild-plugin-pyproject_6.20250108_all.deb ...
3111s Unpacking pybuild-plugin-pyproject (6.20250108) ...
3111s Selecting previously unselected package pymatgen-test-files.
3111s Preparing to unpack .../210-pymatgen-test-files_2024.10.29-1_all.deb ...
3111s Unpacking pymatgen-test-files (2024.10.29-1) ...
3113s Selecting previously unselected package python-matplotlib-data.
3113s Preparing to unpack .../211-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ...
3113s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ...
3113s Selecting previously unselected package libjs-mathjax.
3113s Preparing to unpack .../212-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
3113s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
3114s Selecting previously unselected package sphinx-rtd-theme-common.
3114s Preparing to unpack .../213-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ...
3114s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
3114s Selecting previously unselected package python-pymatgen-doc.
3114s Preparing to unpack .../214-python-pymatgen-doc_2024.10.29+dfsg1-5_all.deb ...
3114s Unpacking python-pymatgen-doc (2024.10.29+dfsg1-5) ...
3114s Selecting previously unselected package python3-all.
3114s Preparing to unpack .../215-python3-all_3.13.1-1~exp2_amd64.deb ...
3114s Unpacking python3-all (3.13.1-1~exp2) ...
3114s Selecting previously unselected package python3.13-dev.
3114s Preparing to unpack .../216-python3.13-dev_3.13.2-1_amd64.deb ...
3114s Unpacking python3.13-dev (3.13.2-1) ...
3114s Selecting previously unselected package python3-dev.
3114s Preparing to unpack .../217-python3-dev_3.13.1-1~exp2_amd64.deb ...
3114s Unpacking python3-dev (3.13.1-1~exp2) ...
3114s Selecting previously unselected package python3.12-dev.
3114s Preparing to unpack .../218-python3.12-dev_3.12.9-1_amd64.deb ...
3114s Unpacking python3.12-dev (3.12.9-1) ...
3114s Selecting previously unselected package python3-all-dev.
3114s Preparing to unpack .../219-python3-all-dev_3.13.1-1~exp2_amd64.deb ...
3114s Unpacking python3-all-dev (3.13.1-1~exp2) ...
3114s Selecting previously unselected package python3-annotated-types.
3114s Preparing to unpack .../220-python3-annotated-types_0.7.0-1_all.deb ...
3114s Unpacking python3-annotated-types (0.7.0-1) ...
3114s Selecting previously unselected package python3-numpy.
3114s Preparing to unpack .../221-python3-numpy_1%3a1.26.4+ds-13_amd64.deb ...
3114s Unpacking python3-numpy (1:1.26.4+ds-13) ...
3115s Selecting previously unselected package python3-decorator.
3115s Preparing to unpack .../222-python3-decorator_5.1.1-5_all.deb ...
3115s Unpacking python3-decorator (5.1.1-5) ...
3115s Selecting previously unselected package python3-scipy.
3115s Preparing to unpack .../223-python3-scipy_1.14.1-4ubuntu1_amd64.deb ...
3115s Unpacking python3-scipy (1.14.1-4ubuntu1) ...
3115s Selecting previously unselected package python3-spglib.
3115s Preparing to unpack .../224-python3-spglib_2.5.0-1ubuntu2_amd64.deb ...
3115s Unpacking python3-spglib (2.5.0-1ubuntu2) ...
3115s Selecting previously unselected package python3-dateutil.
3115s Preparing to unpack .../225-python3-dateutil_2.9.0-3_all.deb ...
3115s Unpacking python3-dateutil (2.9.0-3) ...
3116s Selecting previously unselected package libopenjp2-7:amd64.
3116s Preparing to unpack .../226-libopenjp2-7_2.5.0-2ubuntu3_amd64.deb ...
3116s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu3) ...
3116s Selecting previously unselected package python3-pil:amd64.
3116s Preparing to unpack .../227-python3-pil_11.1.0-5_amd64.deb ...
3116s Unpacking python3-pil:amd64 (11.1.0-5) ...
3116s Selecting previously unselected package python3.12-tk.
3116s Preparing to unpack .../228-python3.12-tk_3.12.9-1_amd64.deb ...
3116s Unpacking python3.12-tk (3.12.9-1) ...
3116s Selecting previously unselected package python3.13-tk.
3116s Preparing to unpack .../229-python3.13-tk_3.13.2-1_amd64.deb ...
3116s Unpacking python3.13-tk (3.13.2-1) ...
3116s Selecting previously unselected package python3-tk:amd64.
3116s Preparing to unpack .../230-python3-tk_3.13.1-1_amd64.deb ...
3116s Unpacking python3-tk:amd64 (3.13.1-1) ...
3116s Selecting previously unselected package python3-pil.imagetk:amd64.
3116s Preparing to unpack .../231-python3-pil.imagetk_11.1.0-5_amd64.deb ...
3116s Unpacking python3-pil.imagetk:amd64 (11.1.0-5) ...
3116s Selecting previously unselected package python3-contourpy.
3116s Preparing to unpack .../232-python3-contourpy_1.3.1-1_amd64.deb ...
3116s Unpacking python3-contourpy (1.3.1-1) ...
3116s Selecting previously unselected package python3-cycler.
3116s Preparing to unpack .../233-python3-cycler_0.12.1-1_all.deb ...
3116s Unpacking python3-cycler (0.12.1-1) ...
3116s Selecting previously unselected package python3-brotli.
3116s Preparing to unpack .../234-python3-brotli_1.1.0-2build3_amd64.deb ...
3116s Unpacking python3-brotli (1.1.0-2build3) ...
3116s Selecting previously unselected package python3-pytz.
3116s Preparing to unpack .../235-python3-pytz_2025.1-3_all.deb ...
3116s Unpacking python3-pytz (2025.1-3) ...
3116s Selecting previously unselected package python3-tz.
3116s Preparing to unpack .../236-python3-tz_2025.1-3_all.deb ...
3116s Unpacking python3-tz (2025.1-3) ...
3116s Selecting previously unselected package python3-platformdirs.
3116s Preparing to unpack .../237-python3-platformdirs_4.3.6-1_all.deb ...
3116s Unpacking python3-platformdirs (4.3.6-1) ...
3116s Selecting previously unselected package python3-fs.
3116s Preparing to unpack .../238-python3-fs_2.4.16-6_all.deb ...
3116s Unpacking python3-fs (2.4.16-6) ...
3116s Selecting previously unselected package python3-lxml:amd64.
3116s Preparing to unpack .../239-python3-lxml_5.3.1-1_amd64.deb ...
3116s Unpacking python3-lxml:amd64 (5.3.1-1) ...
3116s Selecting previously unselected package python3-lz4.
3116s Preparing to unpack .../240-python3-lz4_4.4.0+dfsg-1_amd64.deb ...
3116s Unpacking python3-lz4 (4.4.0+dfsg-1) ...
3116s Selecting previously unselected package python3-mpmath.
3116s Preparing to unpack .../241-python3-mpmath_1.3.0-1_all.deb ...
3116s Unpacking python3-mpmath (1.3.0-1) ...
3116s Selecting previously unselected package python3-sympy.
3116s Preparing to unpack .../242-python3-sympy_1.13.3-1_all.deb ...
3116s Unpacking python3-sympy (1.13.3-1) ...
3117s Selecting previously unselected package python3-ufolib2.
3117s Preparing to unpack .../243-python3-ufolib2_0.17.0+dfsg1-1_all.deb ...
3117s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
3117s Selecting previously unselected package python3-unicodedata2.
3117s Preparing to unpack .../244-python3-unicodedata2_15.1.0+ds-1build2_amd64.deb ...
3117s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ...
3117s Selecting previously unselected package unicode-data.
3117s Preparing to unpack .../245-unicode-data_15.1.0-1_all.deb ...
3117s Unpacking unicode-data (15.1.0-1) ...
3117s Selecting previously unselected package python3-fonttools.
3117s Preparing to unpack .../246-python3-fonttools_4.55.3-2_amd64.deb ...
3117s Unpacking python3-fonttools (4.55.3-2) ...
3117s Selecting previously unselected package python3-kiwisolver.
3117s Preparing to unpack .../247-python3-kiwisolver_1.4.7-3_amd64.deb ...
3117s Unpacking python3-kiwisolver (1.4.7-3) ...
3117s Selecting previously unselected package python3-matplotlib.
3117s Preparing to unpack .../248-python3-matplotlib_3.8.3-3ubuntu2_amd64.deb ...
3117s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ...
3117s Selecting previously unselected package python3-ase.
3117s Preparing to unpack .../249-python3-ase_3.23.0-1ubuntu1_all.deb ...
3117s Unpacking python3-ase (3.23.0-1ubuntu1) ...
3118s Selecting previously unselected package python3-soupsieve.
3118s Preparing to unpack .../250-python3-soupsieve_2.6-1_all.deb ...
3118s Unpacking python3-soupsieve (2.6-1) ...
3118s Selecting previously unselected package python3-bs4.
3118s Preparing to unpack .../251-python3-bs4_4.13.3-1_all.deb ...
3118s Unpacking python3-bs4 (4.13.3-1) ...
3118s Selecting previously unselected package python3-bson.
3118s Preparing to unpack .../252-python3-bson_4.10.1-5_all.deb ...
3118s Unpacking python3-bson (4.10.1-5) ...
3118s Selecting previously unselected package python3-cftime.
3118s Preparing to unpack .../253-python3-cftime_1.6.4-1build2_amd64.deb ...
3118s Unpacking python3-cftime (1.6.4-1build2) ...
3118s Selecting previously unselected package python3-defusedxml.
3118s Preparing to unpack .../254-python3-defusedxml_0.7.1-3_all.deb ...
3118s Unpacking python3-defusedxml (0.7.1-3) ...
3118s Selecting previously unselected package python3-dnspython.
3118s Preparing to unpack .../255-python3-dnspython_2.7.0-1ubuntu1_all.deb ...
3118s Unpacking python3-dnspython (2.7.0-1ubuntu1) ...
3118s Selecting previously unselected package python3-roman.
3118s Preparing to unpack .../256-python3-roman_5.0-1_all.deb ...
3118s Unpacking python3-roman (5.0-1) ...
3118s Selecting previously unselected package python3-docutils.
3118s Preparing to unpack .../257-python3-docutils_0.21.2+dfsg-2_all.deb ...
3118s Unpacking python3-docutils (0.21.2+dfsg-2) ...
3118s Selecting previously unselected package python3-email-validator.
3118s Preparing to unpack .../258-python3-email-validator_2.2.0-1_all.deb ...
3118s Unpacking python3-email-validator (2.2.0-1) ...
3118s Selecting previously unselected package python3-fastjsonschema.
3118s Preparing to unpack .../259-python3-fastjsonschema_2.21.1-1_all.deb ...
3118s Unpacking python3-fastjsonschema (2.21.1-1) ...
3118s Selecting previously unselected package python3-frozendict.
3118s Preparing to unpack .../260-python3-frozendict_1.2-3_all.deb ...
3118s Unpacking python3-frozendict (1.2-3) ...
3118s Selecting previously unselected package python3-h5py-serial.
3118s Preparing to unpack .../261-python3-h5py-serial_3.12.1-1_amd64.deb ...
3118s Unpacking python3-h5py-serial (3.12.1-1) ...
3118s Selecting previously unselected package python3-h5py.
3118s Preparing to unpack .../262-python3-h5py_3.12.1-1_all.deb ...
3118s Unpacking python3-h5py (3.12.1-1) ...
3118s Selecting previously unselected package python3-imagesize.
3118s Preparing to unpack .../263-python3-imagesize_1.4.1-1_all.deb ...
3118s Unpacking python3-imagesize (1.4.1-1) ...
3118s Selecting previously unselected package python3-iniconfig.
3118s Preparing to unpack .../264-python3-iniconfig_1.1.1-2_all.deb ...
3118s Unpacking python3-iniconfig (1.1.1-2) ...
3118s Selecting previously unselected package python3-joblib.
3118s Preparing to unpack .../265-python3-joblib_1.3.2-6_all.deb ...
3118s Unpacking python3-joblib (1.3.2-6) ...
3118s Selecting previously unselected package python3-traitlets.
3118s Preparing to unpack .../266-python3-traitlets_5.14.3+really5.14.3-1_all.deb ...
3118s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ...
3118s Selecting previously unselected package python3-jupyter-core.
3118s Preparing to unpack .../267-python3-jupyter-core_5.7.2-5_all.deb ...
3118s Unpacking python3-jupyter-core (5.7.2-5) ...
3118s Selecting previously unselected package python3-latexcodec.
3119s Preparing to unpack .../268-python3-latexcodec_3.0.0-1_all.deb ...
3119s Unpacking python3-latexcodec (3.0.0-1) ...
3119s Selecting previously unselected package python3-pandas-lib:amd64.
3119s Preparing to unpack .../269-python3-pandas-lib_2.2.3+dfsg-8_amd64.deb ...
3119s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8) ...
3119s Selecting previously unselected package python3-pandas.
3119s Preparing to unpack .../270-python3-pandas_2.2.3+dfsg-8_all.deb ...
3119s Unpacking python3-pandas (2.2.3+dfsg-8) ...
3119s Selecting previously unselected package python3-pydantic-core.
3119s Preparing to unpack .../271-python3-pydantic-core_2.27.2-1_amd64.deb ...
3119s Unpacking python3-pydantic-core (2.27.2-1) ...
3119s Selecting previously unselected package python3-pydantic.
3119s Preparing to unpack .../272-python3-pydantic_2.10.6-1_amd64.deb ...
3119s Unpacking python3-pydantic (2.10.6-1) ...
3119s Selecting previously unselected package python3-tqdm.
3119s Preparing to unpack .../273-python3-tqdm_4.67.1-2_all.deb ...
3119s Unpacking python3-tqdm (4.67.1-2) ...
3119s Selecting previously unselected package python3-ruamel.yaml.clib.
3119s Preparing to unpack .../274-python3-ruamel.yaml.clib_0.2.12+ds-1_amd64.deb ...
3119s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1) ...
3119s Selecting previously unselected package python3-ruamel.yaml.
3119s Preparing to unpack .../275-python3-ruamel.yaml_0.18.10+ds-1_all.deb ...
3119s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ...
3119s Selecting previously unselected package python3-monty.
3119s Preparing to unpack .../276-python3-monty_2025.1.9-1_all.deb ...
3119s Unpacking python3-monty (2025.1.9-1) ...
3119s Selecting previously unselected package python3-nbformat.
3119s Preparing to unpack .../277-python3-nbformat_5.9.1-1_all.deb ...
3119s Unpacking python3-nbformat (5.9.1-1) ...
3119s Selecting previously unselected package python3-netcdf4.
3119s Preparing to unpack .../278-python3-netcdf4_1.7.2-1build2_amd64.deb ...
3119s Unpacking python3-netcdf4 (1.7.2-1build2) ...
3120s Selecting previously unselected package python3-networkx.
3120s Preparing to unpack .../279-python3-networkx_3.2.1-4ubuntu1_all.deb ...
3120s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
3120s Selecting previously unselected package python3-openbabel.
3120s Preparing to unpack .../280-python3-openbabel_3.1.1+dfsg-11ubuntu3_amd64.deb ...
3120s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ...
3120s Selecting previously unselected package python3-palettable.
3120s Preparing to unpack .../281-python3-palettable_3.3.3-1_all.deb ...
3120s Unpacking python3-palettable (3.3.3-1) ...
3120s Selecting previously unselected package python3-phonopy.
3120s Preparing to unpack .../282-python3-phonopy_2.35.0-1_amd64.deb ...
3120s Unpacking python3-phonopy (2.35.0-1) ...
3120s Selecting previously unselected package python3-tenacity.
3120s Preparing to unpack .../283-python3-tenacity_9.0.0-0ubuntu1_all.deb ...
3120s Unpacking python3-tenacity (9.0.0-0ubuntu1) ...
3120s Selecting previously unselected package python3-plotly.
3121s Preparing to unpack .../284-python3-plotly_5.20.0+dfsg-1_all.deb ...
3121s Unpacking python3-plotly (5.20.0+dfsg-1) ...
3122s Selecting previously unselected package python3-pluggy.
3122s Preparing to unpack .../285-python3-pluggy_1.5.0-1_all.deb ...
3122s Unpacking python3-pluggy (1.5.0-1) ...
3122s Selecting previously unselected package python3-six.
3122s Preparing to unpack .../286-python3-six_1.17.0-1_all.deb ...
3122s Unpacking python3-six (1.17.0-1) ...
3122s Selecting previously unselected package python3-pybtex.
3122s Preparing to unpack .../287-python3-pybtex_0.24.0-4_all.deb ...
3122s Unpacking python3-pybtex (0.24.0-4) ...
3122s Selecting previously unselected package python3-tabulate.
3122s Preparing to unpack .../288-python3-tabulate_0.9.0-1_all.deb ...
3122s Unpacking python3-tabulate (0.9.0-1) ...
3122s Selecting previously unselected package python3-uncertainties.
3122s Preparing to unpack .../289-python3-uncertainties_3.2.2-1_all.deb ...
3122s Unpacking python3-uncertainties (3.2.2-1) ...
3122s Selecting previously unselected package python3-pymatgen.
3122s Preparing to unpack .../290-python3-pymatgen_2024.10.29+dfsg1-5_amd64.deb ...
3122s Unpacking python3-pymatgen (2024.10.29+dfsg1-5) ...
3123s Selecting previously unselected package python3-pytest.
3123s Preparing to unpack .../291-python3-pytest_8.3.4-1_all.deb ...
3123s Unpacking python3-pytest (8.3.4-1) ...
3123s Selecting previously unselected package python3-snowballstemmer.
3123s Preparing to unpack .../292-python3-snowballstemmer_2.2.0-4build1_all.deb ...
3123s Unpacking python3-snowballstemmer (2.2.0-4build1) ...
3123s Selecting previously unselected package sphinx-common.
3123s Preparing to unpack .../293-sphinx-common_8.1.3-4_all.deb ...
3123s Unpacking sphinx-common (8.1.3-4) ...
3123s Selecting previously unselected package python3-alabaster.
3123s Preparing to unpack .../294-python3-alabaster_0.7.16-0.1_all.deb ...
3123s Unpacking python3-alabaster (0.7.16-0.1) ...
3123s Selecting previously unselected package python3-sphinx.
3123s Preparing to unpack .../295-python3-sphinx_8.1.3-4_all.deb ...
3123s Unpacking python3-sphinx (8.1.3-4) ...
3123s Selecting previously unselected package python3-sphinxcontrib.jquery.
3123s Preparing to unpack .../296-python3-sphinxcontrib.jquery_4.1-5_all.deb ...
3123s Unpacking python3-sphinxcontrib.jquery (4.1-5) ...
3123s Selecting previously unselected package python3-sphinx-rtd-theme.
3123s Preparing to unpack .../297-python3-sphinx-rtd-theme_3.0.2+dfsg-2_all.deb ...
3123s Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
3123s Selecting previously unselected package mpi-default-bin.
3123s Preparing to unpack .../298-mpi-default-bin_1.18_amd64.deb ...
3123s Unpacking mpi-default-bin (1.18) ...
3123s Selecting previously unselected package python3-mpi4py.
3123s Preparing to unpack .../299-python3-mpi4py_4.0.1-6ubuntu1_amd64.deb ...
3123s Unpacking python3-mpi4py (4.0.1-6ubuntu1) ...
3123s Selecting previously unselected package python3-vtk9.
3123s Preparing to unpack .../300-python3-vtk9_9.3.0+dfsg1-1.1ubuntu3_amd64.deb ...
3123s Unpacking python3-vtk9 (9.3.0+dfsg1-1.1ubuntu3) ...
3124s Setting up dh-python (6.20250108) ...
3124s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
3124s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ...
3124s Setting up liblcms2-2:amd64 (2.16-2) ...
3124s Setting up python3-iniconfig (1.1.1-2) ...
3124s Setting up libtbbmalloc2:amd64 (2022.0.0-1) ...
3124s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
3124s Setting up python3.12-minimal (3.12.9-1) ...
3125s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
3125s Setting up libwayland-server0:amd64 (1.23.1-1) ...
3125s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ...
3125s Setting up libpciaccess0:amd64 (0.17-3build1) ...
3125s Setting up libdouble-conversion3:amd64 (3.3.0-1build1) ...
3125s Setting up fonts-lato (2.015-1) ...
3125s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
3125s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ...
3125s Setting up python3-pydantic-core (2.27.2-1) ...
3125s Setting up libogg0:amd64 (1.3.5-3build1) ...
3125s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
3125s Setting up proj-data (9.5.1-1) ...
3125s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
3125s Setting up libxcb-xinput0:amd64 (1.17.0-2) ...
3125s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
3125s Setting up python3-joblib (1.3.2-6) ...
3126s Setting up python3-lz4 (4.4.0+dfsg-1) ...
3126s Setting up libxcb-render0:amd64 (1.17.0-2) ...
3126s Setting up python3-defusedxml (0.7.1-3) ...
3126s Setting up libarchive-zip-perl (1.68-1) ...
3126s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ...
3126s Setting up libdrm-radeon1:amd64 (2.4.123-1) ...
3126s Setting up libglvnd0:amd64 (1.7.0-1build1) ...
3126s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
3126s Setting up python3-alabaster (0.7.16-0.1) ...
3126s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ...
3126s Setting up fonts-lyx (2.4.3-1) ...
3126s Setting up libxcb-glx0:amd64 (1.17.0-2) ...
3126s Setting up python3-tenacity (9.0.0-0ubuntu1) ...
3127s Setting up libdebhelper-perl (13.24.1ubuntu2) ...
3127s Setting up python3.12 (3.12.9-1) ...
3128s Setting up python3-tqdm (4.67.1-2) ...
3128s Setting up libdrm-intel1:amd64 (2.4.123-1) ...
3128s Setting up libxcb-keysyms1:amd64 (0.4.1-1) ...
3128s Setting up libxcb-shape0:amd64 (1.17.0-2) ...
3128s Setting up python3-ruamel.yaml.clib (0.2.12+ds-1) ...
3128s Setting up x11-common (1:7.7+23ubuntu3) ...
3128s Setting up python3-frozendict (1.2-3) ...
3129s Setting up libibumad3:amd64 (55.0-1ubuntu1) ...
3129s Setting up libdeflate0:amd64 (1.23-1) ...
3129s Setting up python3-tabulate (0.9.0-1) ...
3129s Setting up m4 (1.4.19-5) ...
3129s Setting up python3-latexcodec (3.0.0-1) ...
3129s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ...
3129s Setting up libxcb-render-util0:amd64 (0.3.10-1) ...
3129s Setting up python3-all (3.13.1-1~exp2) ...
3129s Setting up python3-pytz (2025.1-3) ...
3129s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
3129s Setting up libibmad5:amd64 (55.0-1ubuntu1) ...
3129s Setting up libxcb-icccm4:amd64 (0.4.2-1) ...
3129s Setting up libgomp1:amd64 (14.2.0-16ubuntu1) ...
3129s Setting up python3-networkx (3.2.1-4ubuntu1) ...
3131s Setting up python3-wheel (0.45.1-1) ...
3131s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
3131s Setting up python3-annotated-types (0.7.0-1) ...
3132s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ...
3132s Setting up libaec0:amd64 (1.1.3-1) ...
3132s Setting up python3-platformdirs (4.3.6-1) ...
3132s Setting up libopengl0:amd64 (1.7.0-1build1) ...
3132s Setting up python3-tz (2025.1-3) ...
3132s Setting up libxcb-util1:amd64 (0.4.1-1) ...
3132s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ...
3132s Setting up libxcb-xkb1:amd64 (1.17.0-2) ...
3132s Setting up libxcb-image0:amd64 (0.4.0-2build1) ...
3132s Setting up python3-fs (2.4.16-6) ...
3132s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ...
3132s Setting up libxcb-present0:amd64 (1.17.0-2) ...
3132s Setting up unicode-data (15.1.0-1) ...
3132s Setting up libsymspg2:amd64 (2.5.0-1ubuntu2) ...
3132s Setting up python3-six (1.17.0-1) ...
3132s Setting up python3-bson (4.10.1-5) ...
3132s Setting up python3-palettable (3.3.3-1) ...
3133s Setting up python3-roman (5.0-1) ...
3133s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-5) ...
3133s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3133s Setting up python3-decorator (5.1.1-5) ...
3133s Setting up autotools-dev (20220109.1) ...
3133s Setting up libblas3:amd64 (3.12.1-2) ...
3133s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
3133s Setting up python3-packaging (24.2-1) ...
3133s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ...
3133s Setting up libmunge2:amd64 (0.5.16-1) ...
3133s Setting up libllvm17t64:amd64 (1:17.0.6-20) ...
3133s Setting up libexpat1-dev:amd64 (2.6.4-1) ...
3133s Setting up python3-pyproject-hooks (1.2.0-1) ...
3134s Setting up libxcb-sync1:amd64 (1.17.0-2) ...
3134s Setting up python3-snowballstemmer (2.2.0-4build1) ...
3134s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4ubuntu2) ...
3134s Setting up libjsoncpp26:amd64 (1.9.6-3) ...
3134s Setting up python3-brotli (1.1.0-2build3) ...
3134s Setting up liblzf1:amd64 (3.6-4) ...
3134s Setting up libquadmath0:amd64 (14.2.0-16ubuntu1) ...
3134s Setting up python3-cycler (0.12.1-1) ...
3135s Setting up libimagequant0:amd64 (2.18.0-1build1) ...
3135s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ...
3135s Setting up fonts-dejavu-mono (2.37-8) ...
3135s Setting up python3-kiwisolver (1.4.7-3) ...
3135s Setting up libhwloc15:amd64 (2.11.2-1build1) ...
3135s Setting up libmpc3:amd64 (1.3.1-1build2) ...
3135s Setting up cython3 (3.0.11+dfsg-2ubuntu1) ...
3136s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
3136s Setting up autopoint (0.23.1-1) ...
3136s Setting up fonts-dejavu-core (2.37-8) ...
3136s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
3136s Setting up libglapi-mesa:amd64 (24.3.4-3ubuntu1) ...
3136s Setting up python3-toml (0.10.2-1) ...
3136s Setting up python3-installer (0.7.0+dfsg1-3) ...
3137s Setting up libgfortran5:amd64 (14.2.0-16ubuntu1) ...
3137s Setting up libvulkan1:amd64 (1.4.304.0-1) ...
3137s Setting up autoconf (2.72-3) ...
3137s Setting up python3-pluggy (1.5.0-1) ...
3137s Setting up libwebp7:amd64 (1.5.0-0.1) ...
3137s Setting up python3-pybtex (0.24.0-4) ...
3137s Setting up libubsan1:amd64 (14.2.0-16ubuntu1) ...
3137s Setting up python3-fastjsonschema (2.21.1-1) ...
3137s Setting up python3-ruamel.yaml (0.18.10+ds-1) ...
3138s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
3138s Setting up dwz (0.15-1build6) ...
3138s Setting up libmtdev1t64:amd64 (1.1.7-1) ...
3138s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ...
3138s Setting up libxshmfence1:amd64 (1.3-1build5) ...
3138s Setting up libhwasan0:amd64 (14.2.0-16ubuntu1) ...
3138s Setting up python3-dnspython (2.7.0-1ubuntu1) ...
3138s Setting up libxcb-randr0:amd64 (1.17.0-2) ...
3138s Setting up python3-traitlets (5.14.3+really5.14.3-1) ...
3138s Setting up libasan8:amd64 (14.2.0-16ubuntu1) ...
3138s Setting up libjson-perl (4.10000-1) ...
3138s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ...
3139s Setting up libpsm2-2 (11.2.185-2.1) ...
3139s Setting up openmpi-common (5.0.6-4) ...
3139s Setting up debugedit (1:5.1-2) ...
3139s Setting up libmd4c0:amd64 (0.5.2-2) ...
3139s Setting up librdmacm1t64:amd64 (55.0-1ubuntu1) ...
3139s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu3) ...
3139s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
3139s Setting up python3-dateutil (2.9.0-3) ...
3139s Setting up python3-email-validator (2.2.0-1) ...
3139s Setting up sgml-base (1.31) ...
3139s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ...
3139s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
3139s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ...
3139s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
3139s Setting up libtsan2:amd64 (14.2.0-16ubuntu1) ...
3139s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
3139s Setting up python3-mpmath (1.3.0-1) ...
3140s Setting up libisl23:amd64 (0.27-1) ...
3140s Setting up python3-build (1.2.2-1) ...
3140s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ...
3140s Setting up libwebpmux3:amd64 (1.5.0-0.1) ...
3140s Setting up libinchi1.07 (1.07.2+dfsg-1) ...
3140s Setting up python3-soupsieve (2.6-1) ...
3140s Setting up pymatgen-test-files (2024.10.29-1) ...
3140s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
3140s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
3140s Setting up libcc1-0:amd64 (14.2.0-16ubuntu1) ...
3140s Setting up python3-jupyter-core (5.7.2-5) ...
3141s Setting up liblsan0:amd64 (14.2.0-16ubuntu1) ...
3141s Setting up libhsakmt1:amd64 (5.7.0-1build1) ...
3141s Setting up libsz2:amd64 (1.1.3-1) ...
3141s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
3141s Setting up libitm1:amd64 (14.2.0-16ubuntu1) ...
3141s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
3141s Setting up python3-imagesize (1.4.1-1) ...
3141s Setting up libwacom-common (2.14.0-1) ...
3141s Setting up libwayland-client0:amd64 (1.23.1-1) ...
3141s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
3141s Setting up automake (1:1.17-3) ...
3141s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
3141s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
3141s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ...
3141s Setting up python3-sympy (1.13.3-1) ...
3152s Setting up libice6:amd64 (2:1.1.1-1) ...
3152s Setting up mesa-libgallium:amd64 (24.3.4-3ubuntu1) ...
3152s Setting up liblapack3:amd64 (3.12.1-2) ...
3152s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
3152s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3152s Setting up gettext (0.23.1-1) ...
3152s Setting up libgbm1:amd64 (24.3.4-3ubuntu1) ...
3152s Setting up libwacom9:amd64 (2.14.0-1) ...
3152s Setting up pybuild-plugin-pyproject (6.20250108) ...
3152s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
3153s Setting up python3-pytest (8.3.4-1) ...
3153s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ...
3153s Setting up libgl1-mesa-dri:amd64 (24.3.4-3ubuntu1) ...
3153s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3153s Setting up libpython3.12-dev:amd64 (3.12.9-1) ...
3153s Setting up python3-nbformat (5.9.1-1) ...
3153s Setting up libhwloc-plugins:amd64 (2.11.2-1build1) ...
3153s Setting up python3-bs4 (4.13.3-1) ...
3154s Setting up libinput-bin (1.27.1-1) ...
3154s Setting up libtbbbind-2-5:amd64 (2022.0.0-1) ...
3154s Setting up intltool-debian (0.35.0+20060710.6) ...
3154s Setting up libmaeparser1:amd64 (1.3.1-1build1) ...
3154s Setting up libegl-mesa0:amd64 (24.3.4-3ubuntu1) ...
3154s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
3154s Setting up packmol (1:20.15.3-1) ...
3154s Setting up python3-pydantic (2.10.6-1) ...
3154s Setting up libraqm0:amd64 (0.10.2-1) ...
3154s Setting up libpython3.13-dev:amd64 (3.13.2-1) ...
3154s Setting up python3.12-dev (3.12.9-1) ...
3154s Setting up cpp-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
3154s Setting up libpmix2t64:amd64 (5.0.6-3) ...
3154s Setting up python3-plotly (5.20.0+dfsg-1) ...
3168s Setting up python3-numpy (1:1.26.4+ds-13) ...
3171s Setting up libjs-sphinxdoc (8.1.3-4) ...
3171s Setting up cpp-14 (14.2.0-16ubuntu1) ...
3171s Setting up dh-strip-nondeterminism (1.14.1-2) ...
3171s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
3171s Setting up python3-lxml:amd64 (5.3.1-1) ...
3171s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
3171s Setting up libhsa-runtime64-1 (5.7.1-2build1) ...
3171s Setting up xml-core (0.19) ...
3172s Setting up libegl1:amd64 (1.7.0-1build1) ...
3172s Setting up python3-contourpy (1.3.1-1) ...
3172s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
3172s Setting up libgcc-14-dev:amd64 (14.2.0-16ubuntu1) ...
3172s Setting up python3-spglib (2.5.0-1ubuntu2) ...
3172s Setting up libstdc++-14-dev:amd64 (14.2.0-16ubuntu1) ...
3172s Setting up libsm6:amd64 (2:1.2.4-1) ...
3172s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
3172s Setting up python3-uncertainties (3.2.2-1) ...
3172s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
3172s Setting up libinput10:amd64 (1.27.1-1) ...
3172s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
3172s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
3174s Regenerating fonts cache... done.
3174s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu2) ...
3174s Setting up libxft2:amd64 (2.3.6-1build1) ...
3174s Setting up libglx-mesa0:amd64 (24.3.4-3ubuntu1) ...
3174s Setting up python3-scipy (1.14.1-4ubuntu1) ...
3180s Setting up libpython3-dev:amd64 (3.13.1-1~exp2) ...
3180s Setting up libglx0:amd64 (1.7.0-1build1) ...
3180s Setting up libproj25:amd64 (9.5.1-1) ...
3180s Setting up python3.13-dev (3.13.2-1) ...
3180s Setting up po-debconf (1.0.21+nmu1) ...
3180s Setting up libtk8.6:amd64 (8.6.16-1) ...
3180s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ...
3180s Setting up python3.12-tk (3.12.9-1) ...
3180s Setting up python3-h5py-serial (3.12.1-1) ...
3181s Setting up libtbb12:amd64 (2022.0.0-1) ...
3181s Setting up python-pymatgen-doc (2024.10.29+dfsg1-5) ...
3181s Setting up libcairo2:amd64 (1.18.2-2) ...
3181s Setting up python3.13-tk (3.13.2-1) ...
3181s Setting up python3-pil:amd64 (11.1.0-5) ...
3181s Setting up libgl1:amd64 (1.7.0-1build1) ...
3181s Setting up python3-pandas (2.2.3+dfsg-8) ...
3190s Setting up libamdhip64-5 (5.7.1-5) ...
3190s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-5) ...
3190s Setting up libpython3-all-dev:amd64 (3.13.1-1~exp2) ...
3190s Setting up sphinx-common (8.1.3-4) ...
3190s Setting up python3-dev (3.13.1-1~exp2) ...
3190s Setting up python3-h5py (3.12.1-1) ...
3190s Setting up python3-cftime (1.6.4-1build2) ...
3190s Setting up libglew2.2:amd64 (2.2.0-4build1) ...
3190s Setting up cpp (4:14.2.0-1ubuntu1) ...
3190s Setting up python3-monty (2025.1.9-1) ...
3190s Setting up gcc-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
3190s Setting up python3-netcdf4 (1.7.2-1build2) ...
3190s Setting up python3-all-dev (3.13.1-1~exp2) ...
3190s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
3190s Setting up libucx0:amd64 (1.17.0+ds-3build1) ...
3190s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
3190s Setting up blt (2.5.3+dfsg-7build1) ...
3190s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ...
3190s Setting up python3-tk:amd64 (3.13.1-1) ...
3191s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
3191s Setting up gcc-14 (14.2.0-16ubuntu1) ...
3191s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3191s Setting up python3-pil.imagetk:amd64 (11.1.0-5) ...
3191s Setting up g++-14-x86-64-linux-gnu (14.2.0-16ubuntu1) ...
3191s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
3191s Setting up g++-14 (14.2.0-16ubuntu1) ...
3191s Setting up libopenmpi40:amd64 (5.0.6-4) ...
3191s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ...
3191s Setting up libtool (2.5.4-3build1) ...
3191s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu2) ...
3191s Setting up gcc (4:14.2.0-1ubuntu1) ...
3191s Setting up dh-autoreconf (20) ...
3191s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
3191s Setting up g++ (4:14.2.0-1ubuntu1) ...
3191s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
3191s Setting up build-essential (12.10ubuntu1) ...
3191s Setting up openmpi-bin (5.0.6-4) ...
3191s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
3191s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist
3191s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
3191s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-1.1ubuntu3) ...
3191s Setting up mpi-default-bin (1.18) ...
3191s Setting up debhelper (13.24.1ubuntu2) ...
3191s Setting up python3-mpi4py (4.0.1-6ubuntu1) ...
3191s Setting up python3-vtk9 (9.3.0+dfsg1-1.1ubuntu3) ...
3191s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
3191s   patn = re.compile ("  \S")
3192s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
3192s   patn = re.compile ("  \S")
3192s Setting up python3-fonttools (4.55.3-2) ...
3193s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
3193s Setting up python3-matplotlib (3.8.3-3ubuntu2) ...
3196s Setting up python3-ase (3.23.0-1ubuntu1) ...
3200s Setting up python3-phonopy (2.35.0-1) ...
3201s Setting up python3-pymatgen (2024.10.29+dfsg1-5) ...
3203s Processing triggers for libc-bin (2.40-4ubuntu1) ...
3203s Processing triggers for systemd (257.2-3ubuntu1) ...
3203s Processing triggers for man-db (2.13.0-1) ...
3206s Processing triggers for udev (257.2-3ubuntu1) ...
3206s Processing triggers for install-info (7.1.1-1) ...
3206s Processing triggers for sgml-base (1.31) ...
3206s Setting up docutils-common (0.21.2+dfsg-2) ...
3206s Processing triggers for sgml-base (1.31) ...
3206s Setting up python3-docutils (0.21.2+dfsg-2) ...
3207s Setting up python3-sphinx (8.1.3-4) ...
3209s Setting up python3-sphinxcontrib.jquery (4.1-5) ...
3209s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
3220s autopkgtest [15:07:38]: test test-pymatgen-net: [-----------------------
3221s running network tests with NET_TEST_LIST=test_get_structure_by_id
3221s ============================= test session starts ==============================
3221s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12
3221s cachedir: .pytest_cache
3221s rootdir: /tmp/autopkgtest.NJmMq4/build.Fmg/src
3221s configfile: pyproject.toml
3221s plugins: typeguard-4.4.1
3245s collecting ... collected 2935 items / 2934 deselected / 8 skipped / 1 selected
3245s 
3246s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED          [100%]
3246s 
3246s ============================= slowest 30 durations =============================
3246s 0.49s call     tests/ext/test_cod.py::TestCOD::test_get_structure_by_id
3246s 
3246s (2 durations < 0.005s hidden.  Use -vv to show these durations.)
3246s =========================== short test summary info ============================
3246s SKIPPED [1] tests/analysis/test_functional_groups.py:16: could not import 'openbabel': No module named '_openbabel'
3246s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2
3246s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down
3246s SKIPPED [1] tests/io/test_babel.py:17: could not import 'openbabel.pybel': No module named '_openbabel'
3246s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff'
3246s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml'
3246s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed
3246s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed
3246s ================ 1 passed, 8 skipped, 2934 deselected in 24.66s ================
3247s ============================= test session starts ==============================
3247s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13
3247s cachedir: .pytest_cache
3247s rootdir: /tmp/autopkgtest.NJmMq4/build.Fmg/src
3247s configfile: pyproject.toml
3247s plugins: typeguard-4.4.1
3268s collecting ... collected 2953 items / 2952 deselected / 6 skipped / 1 selected
3268s 
3269s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED          [100%]
3269s 
3269s ============================= slowest 30 durations =============================
3269s 0.94s call     tests/ext/test_cod.py::TestCOD::test_get_structure_by_id
3269s 
3269s (2 durations < 0.005s hidden.  Use -vv to show these durations.)
3269s =========================== short test summary info ============================
3269s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2
3269s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down
3269s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff'
3269s SKIPPED [1] tests/io/test_shengbte.py:9: could not import 'f90nml': No module named 'f90nml'
3269s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed
3269s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed
3269s ================ 1 passed, 6 skipped, 2952 deselected in 21.65s ================
3270s autopkgtest [15:08:28]: test test-pymatgen-net: -----------------------]
3271s test-pymatgen-net    PASS
3271s autopkgtest [15:08:29]: test test-pymatgen-net:  - - - - - - - - - - results - - - - - - - - - -
3271s autopkgtest [15:08:29]: @@@@@@@@@@@@@@@@@@@@ summary
3271s test-pymatgen        PASS
3271s test-pymatgen-net    PASS
3288s nova [W] Skipping flock for amd64
3288s Creating nova instance adt-plucky-amd64-pymatgen-20250214-141357-juju-7f2275-prod-proposed-migration-environment-2-103169f6-efd4-4367-a5c8-8085d9bb2c7d from image adt/ubuntu-plucky-amd64-server-20250213.img (UUID 4edb660a-e784-41e6-9a8e-5891c8117220)...
3288s nova [W] Timed out waiting for c2c62e01-0ddc-4802-a7a1-987c09402b53 to get deleted.
3288s nova [W] Skipping flock for amd64
3288s Creating nova instance adt-plucky-amd64-pymatgen-20250214-141357-juju-7f2275-prod-proposed-migration-environment-2-103169f6-efd4-4367-a5c8-8085d9bb2c7d from image adt/ubuntu-plucky-amd64-server-20250214.img (UUID 49d7a748-c2fa-44e4-94d1-a5d50d3ed217)...
3288s nova [W] Timed out waiting for e3d1d4f7-8ade-4d12-b26c-6c4034ec4b80 to get deleted.