0s autopkgtest [13:41:45]: starting date and time: 2024-11-15 13:41:45+0000 0s autopkgtest [13:41:45]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [13:41:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.swasi6zu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade pymatgen --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.8.3-3ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-31.secgroup --name adt-plucky-amd64-pymatgen-20241115-134145-juju-7f2275-prod-proposed-migration-environment-2-fb193414-f325-446e-b745-a21da5b9b77b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 47s autopkgtest [13:42:32]: testbed dpkg architecture: amd64 48s autopkgtest [13:42:33]: testbed apt version: 2.9.8 48s autopkgtest [13:42:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.2 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 49s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 49s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1062 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [108 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [174 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [840 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [300 kB] 49s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 49s Fetched 2718 kB in 1s (3209 kB/s) 49s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 53s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 54s Reading package lists... 54s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s autopkgtest [13:42:44]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 59s autopkgtest [13:42:44]: @@@@@@@@@@@@@@@@@@@@ apt-source pymatgen 62s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymatgen 2024.6.10+dfsg1-8 (dsc) [3226 B] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymatgen 2024.6.10+dfsg1-8 (tar) [9800 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymatgen 2024.6.10+dfsg1-8 (diff) [15.5 kB] 62s gpgv: Signature made Sun Aug 11 23:57:56 2024 UTC 62s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 62s gpgv: issuer "dparsons@debian.org" 62s gpgv: Can't check signature: No public key 62s dpkg-source: warning: cannot verify inline signature for ./pymatgen_2024.6.10+dfsg1-8.dsc: no acceptable signature found 63s autopkgtest [13:42:48]: testing package pymatgen version 2024.6.10+dfsg1-8 63s autopkgtest [13:42:48]: build not needed 66s autopkgtest [13:42:51]: test test-pymatgen: preparing testbed 67s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Starting pkgProblemResolver with broken count: 0 68s Starting 2 pkgProblemResolver with broken count: 0 68s Done 68s The following additional packages will be installed: 68s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 68s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 68s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 68s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 68s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 68s fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 68s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 68s libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3 68s libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0 68s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libdrm-radeon1 68s libegl-mesa0 libegl1 libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 68s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 68s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 68s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 68s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 libhwasan0 68s libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 68s libinchi1 libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 68s libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax 68s libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 liblapack3 68s liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 68s libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnetcdf19t64 libogg0 libopenbabel7 68s libopengl0 libopenjp2-7 libopenmpi3t64 libpciaccess0 libpcre2-16-0 68s libpixman-1-0 libpmix2t64 libproj25 libpsm-infinipath1 libpsm2-2 68s libpython3-all-dev libpython3-dev libpython3.12-dev libqhull-r8.0 68s libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 68s libqt5widgets5t64 libquadmath0 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 68s libstdc++-14-dev libsymspg2 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 68s libtcl8.6 libtheora0 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libucx0 68s libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common libwacom9 68s libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 68s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 68s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 68s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 68s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 68s libxfixes3 libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 68s libxslt1.1 libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin 68s ocl-icd-libopencl1 openmpi-bin openmpi-common packmol po-debconf proj-data 68s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 68s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 68s python3-annotated-types python3-appdirs python3-ase python3-brotli 68s python3-bs4 python3-bson python3-build python3-cftime python3-contourpy 68s python3-cycler python3-dateutil python3-decorator python3-defusedxml 68s python3-dev python3-dnspython python3-docutils python3-dotenv 68s python3-email-validator python3-emmet-core python3-fastjsonschema 68s python3-fonttools python3-frozendict python3-fs python3-h5py 68s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 68s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 68s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 68s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 68s python3-numpy python3-openbabel python3-packaging python3-palettable 68s python3-pandas python3-pandas-lib python3-phonopy python3-pil 68s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 68s python3-pybtex python3-pydantic python3-pydantic-core 68s python3-pydantic-settings python3-pymatgen python3-pyproject-hooks 68s python3-pytest python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib 68s python3-scipy python3-six python3-snowballstemmer python3-soupsieve 68s python3-spglib python3-sphinx python3-sphinx-rtd-theme 68s python3-sphinxcontrib.jquery python3-sympy python3-tabulate python3-tenacity 68s python3-tk python3-toml python3-tqdm python3-traitlets python3-tz 68s python3-ufolib2 python3-uncertainties python3-unicodedata2 python3-vtk9 68s python3-wheel python3.12-dev python3.12-tk sgml-base sphinx-common 68s sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common xml-core 68s zlib1g-dev 68s Suggested packages: 68s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 68s cpp-14-doc cython-doc dh-make flit g++-multilib g++-14-multilib gcc-14-doc 68s gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-14-multilib 68s gdb-x86-64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev glew-utils 68s libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 68s fonts-stix libjs-mathjax-doc liblcms2-utils proj-bin libthai0 68s qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-14-doc tcl8.6 tk8.6 68s libtool-doc gfortran | fortran95-compiler gcj-jdk vtk9-doc vtk9-examples 68s libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler libmail-box-perl 68s python-ase-doc python3-pycodcif python3-pip python3-venv python-build-doc 68s python-cycler-doc python3-trio python3-aioquic python3-h2 python3-httpx 68s python3-httpcore docutils-doc fonts-linuxlibertine | ttf-linux-libertine 68s texlive-lang-french texlive-latex-base texlive-latex-recommended 68s python-fastjsonschema-doc python-h5py-doc python-installer-doc 68s python-joblib-doc python-latexcodec-doc python-lxml-doc cm-super-minimal 68s dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 68s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 68s python3-gobject python3-pyqt5 python3-sip python3-tornado 68s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 68s python3-gdal python3-pydot python3-pygraphviz gfortran python-numpy-doc 68s python-pandas-doc python3-statsmodels python-pil-doc python3-ipykernel 68s python-pybtex-doc python3-mp-api python-scipy-doc python3-stemmer dvisvgm 68s fonts-freefont-otf imagemagick-6.q16 latexmk sphinx-doc tex-gyre 68s texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic 68s python-sympy-doc python-tenacity-doc tix python3-tk-dbg python3.13-tk 68s python-traitlets-doc python-uncertainties-doc mayavi2 sgml-base-doc 68s Recommended packages: 68s libarchive-cpio-perl libgl1-amber-dri javascript-common libjson-xs-perl 68s qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 libltdl-dev 68s mesa-vulkan-drivers | vulkan-icd tcl libmail-sendmail-perl python3-bson-ext 68s libpaper-utils python3-simplejson python3-psutil python3-cssselect 68s python3-html5lib python-monty-doc python3-torch python3-bottleneck 68s python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba 68s python3-olefile python3-tomli isympy-common 68s The following NEW packages will be installed: 68s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 68s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 68s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 68s docutils-common dwz fontconfig fontconfig-config fonts-dejavu-core 68s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lato 68s fonts-lyx fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu 68s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 68s gettext intltool-debian libaec0 libamd-comgr2 libamdhip64-5 68s libarchive-zip-perl libasan8 libblas3 libboost-iostreams1.83.0 libcairo2 68s libcc1-0 libdebhelper-perl libdeflate0 libdouble-conversion3 libdrm-amdgpu1 68s libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 libevent-pthreads-2.1-7t64 68s libexpat1-dev libfabric1 libfile-stripnondeterminism-perl libfontconfig1 68s libgbm1 libgcc-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 68s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 68s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 68s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 68s libibmad5 libibumad3 libice6 libimagequant0 libinchi1 libinput-bin 68s libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 68s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore 68s libjson-perl libjsoncpp25 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 68s libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3 libmtdev1t64 68s libmunge2 libnetcdf19t64 libogg0 libopenbabel7 libopengl0 libopenjp2-7 68s libopenmpi3t64 libpciaccess0 libpcre2-16-0 libpixman-1-0 libpmix2t64 68s libproj25 libpsm-infinipath1 libpsm2-2 libpython3-all-dev libpython3-dev 68s libpython3.12-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 68s libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0 librdmacm1t64 68s libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2 libtbb12 68s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 libtool 68s libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common 68s libwacom9 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 68s libwebpmux3 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 68s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 68s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 68s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 68s libxfixes3 libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 68s libxslt1.1 libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin 68s ocl-icd-libopencl1 openmpi-bin openmpi-common packmol po-debconf proj-data 68s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 68s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 68s python3-annotated-types python3-appdirs python3-ase python3-brotli 68s python3-bs4 python3-bson python3-build python3-cftime python3-contourpy 68s python3-cycler python3-dateutil python3-decorator python3-defusedxml 68s python3-dev python3-dnspython python3-docutils python3-dotenv 68s python3-email-validator python3-emmet-core python3-fastjsonschema 68s python3-fonttools python3-frozendict python3-fs python3-h5py 68s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 68s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 68s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 68s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 68s python3-numpy python3-openbabel python3-packaging python3-palettable 68s python3-pandas python3-pandas-lib python3-phonopy python3-pil 68s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 68s python3-pybtex python3-pydantic python3-pydantic-core 68s python3-pydantic-settings python3-pymatgen python3-pyproject-hooks 68s python3-pytest python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib 68s python3-scipy python3-six python3-snowballstemmer python3-soupsieve 68s python3-spglib python3-sphinx python3-sphinx-rtd-theme 68s python3-sphinxcontrib.jquery python3-sympy python3-tabulate python3-tenacity 68s python3-tk python3-toml python3-tqdm python3-traitlets python3-tz 68s python3-ufolib2 python3-uncertainties python3-unicodedata2 python3-vtk9 68s python3-wheel python3.12-dev python3.12-tk sgml-base sphinx-common 68s sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common xml-core 68s zlib1g-dev 68s 0 upgraded, 302 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 532 MB/532 MB of archives. 68s After this operation, 2026 MB of additional disk space will be used. 68s Get:1 /tmp/autopkgtest.petRaz/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [1132 B] 68s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 69s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 69s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 69s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 69s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 69s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 69s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 69s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 69s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 69s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 69s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 69s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 69s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 69s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 69s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 69s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 69s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 69s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 70s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 70s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 70s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 70s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 70s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 70s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 70s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 70s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 70s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 70s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 70s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 70s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 70s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 70s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 71s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 71s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 71s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 71s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 71s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 71s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 71s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 71s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 71s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 71s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu2 [3368 kB] 71s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 71s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 71s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 71s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 71s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 71s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 71s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 71s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 71s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 71s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 71s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 71s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 71s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 71s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 71s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 72s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 72s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 72s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 72s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 72s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 72s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 72s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 72s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 73s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 73s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 73s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 73s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 73s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 73s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3.2ubuntu2 [260 kB] 73s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 73s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 73s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 73s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 73s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 73s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 73s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 73s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 73s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 73s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB] 73s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 73s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.3-1ubuntu1 [42.4 kB] 73s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 73s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 73s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 73s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 73s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 73s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 73s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 73s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.3-1ubuntu1 [9904 kB] 73s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.3-1ubuntu1 [32.0 kB] 73s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB] 73s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.3-1ubuntu1 [129 kB] 73s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 73s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 73s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 73s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 74s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 74s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 74s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 74s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB] 74s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.3-1ubuntu1 [34.4 kB] 74s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 74s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 74s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 74s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 74s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.3-1ubuntu1 [153 kB] 74s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 74s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 74s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 74s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 74s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 74s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 74s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 74s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 74s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 74s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 74s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 74s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 74s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1 amd64 1.03+dfsg-4build1 [463 kB] 74s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.13.0-1 [98.6 kB] 74s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.13.0-1 [25.1 kB] 74s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.26.2-1 [22.8 kB] 74s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [14.4 kB] 74s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.26.2-1 [137 kB] 74s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 74s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 74s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 74s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 74s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 74s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 74s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 74s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 74s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp25 amd64 1.9.5-6build1 [82.8 kB] 74s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 74s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 74s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 74s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 74s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 74s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 74s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 74s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 74s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 74s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu1 [3333 kB] 75s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 75s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 75s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 75s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 75s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 75s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 75s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 75s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 75s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi3t64 amd64 4.1.6-13.3ubuntu2 [2575 kB] 75s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 75s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.0-1 [7919 kB] 75s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 75s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 75s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 75s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 75s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.0-1 [1500 kB] 75s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 75s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 75s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.12.6-0ubuntu1 [10.2 kB] 75s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.12.6-0ubuntu1 [916 B] 75s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 75s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu1 [2036 kB] 75s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu1 [221 kB] 75s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 75s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu1 [724 kB] 75s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 75s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 75s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.0-1build3 [10.7 kB] 75s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 75s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.0-1build4 [7956 B] 75s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.9-1build4 [9608 B] 75s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 75s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 75s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 75s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 75s Get:186 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1build1 [14.5 kB] 75s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu1 [3791 kB] 76s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu1 [2561 kB] 76s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 76s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.4.0-1ubuntu1 [209 kB] 76s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2021.12.0-1ubuntu2 [52.5 kB] 76s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2021.12.0-1ubuntu2 [15.4 kB] 76s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2021.12.0-1ubuntu2 [89.3 kB] 76s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheora0 amd64 1.1.1+dfsg.1-17 [211 kB] 76s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 76s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-1build1 [25.3 MB] 76s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-1build1 [182 kB] 76s Get:198 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 76s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 76s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 76s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 4.1.6-13.3ubuntu2 [170 kB] 77s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 4.1.6-13.3ubuntu2 [114 kB] 77s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 packmol amd64 1:20.14.3-1 [120 kB] 77s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 77s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 77s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 77s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 77s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 77s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 77s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 77s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymatgen-test-files all 2024.10.29-1 [213 MB] 86s Get:212 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 86s Get:213 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 86s Get:214 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 86s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pymatgen-doc all 2024.6.10+dfsg1-8 [1107 kB] 86s Get:216 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 86s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 86s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.12.6-0ubuntu1 [26.7 kB] 86s Get:219 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.12.6-0ubuntu1 [908 B] 86s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 86s Get:221 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 86s Get:222 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 86s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 86s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 87s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.4.0-1ubuntu1 [29.6 kB] 87s Get:226 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 87s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 87s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 87s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 87s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 87s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.6-1ubuntu1 [9806 B] 87s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 87s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 87s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 87s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 87s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 87s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 87s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 87s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 87s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 87s Get:241 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 87s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 87s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 87s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 87s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 88s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 88s Get:247 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu1 [4691 kB] 88s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ase all 3.23.0-1 [1754 kB] 88s Get:249 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB] 88s Get:250 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.12.3-3 [109 kB] 88s Get:251 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.7.3-2ubuntu2 [41.2 kB] 88s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1 [214 kB] 88s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 88s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.6.1-1ubuntu1 [163 kB] 88s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 88s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 88s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dotenv all 1.0.1-1 [22.3 kB] 88s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 88s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 88s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 88s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.23.4-2build1 [1811 kB] 88s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.9.1-1 [290 kB] 88s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.0-1 [91.6 kB] 88s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2024.7.29-1 [38.0 kB] 88s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 88s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 88s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-settings all 2.6.1-1 [40.8 kB] 88s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 88s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 89s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 89s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 89s Get:272 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 89s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 89s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 89s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 89s Get:276 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 89s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 89s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [138 kB] 89s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 89s Get:280 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 89s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB] 89s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymatgen amd64 2024.6.10+dfsg1-8 [2506 kB] 89s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu1 [609 kB] 89s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-emmet-core all 0.76.2-1 [123 kB] 89s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-frozendict all 1.2-3 [4906 B] 89s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 89s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 89s Get:288 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 89s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 89s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1 [645 kB] 89s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-phonopy amd64 2.23.1-1 [263 kB] 89s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 89s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 89s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 89s Get:295 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 89s Get:296 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 89s Get:297 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 89s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 89s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 89s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 89s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpi4py amd64 3.1.6-9ubuntu1 [467 kB] 89s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-1build1 [7834 kB] 90s Fetched 532 MB in 21s (24.9 MB/s) 90s Selecting previously unselected package fonts-lato. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75576 files and directories currently installed.) 91s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 91s Unpacking fonts-lato (2.015-1) ... 91s Selecting previously unselected package sgml-base. 91s Preparing to unpack .../001-sgml-base_1.31_all.deb ... 91s Unpacking sgml-base (1.31) ... 91s Selecting previously unselected package m4. 91s Preparing to unpack .../002-m4_1.4.19-4build1_amd64.deb ... 91s Unpacking m4 (1.4.19-4build1) ... 91s Selecting previously unselected package autoconf. 91s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 91s Unpacking autoconf (2.72-3) ... 91s Selecting previously unselected package autotools-dev. 91s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 91s Unpacking autotools-dev (20220109.1) ... 91s Selecting previously unselected package automake. 91s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 91s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 91s Selecting previously unselected package autopoint. 91s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 91s Unpacking autopoint (0.22.5-2) ... 91s Selecting previously unselected package libtcl8.6:amd64. 91s Preparing to unpack .../007-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 91s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 91s Selecting previously unselected package fonts-dejavu-mono. 91s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 91s Unpacking fonts-dejavu-mono (2.37-8) ... 91s Selecting previously unselected package fonts-dejavu-core. 91s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 91s Unpacking fonts-dejavu-core (2.37-8) ... 91s Selecting previously unselected package fontconfig-config. 91s Preparing to unpack .../010-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 91s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 91s Selecting previously unselected package libfontconfig1:amd64. 91s Preparing to unpack .../011-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 91s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 91s Selecting previously unselected package libxrender1:amd64. 91s Preparing to unpack .../012-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 91s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 91s Selecting previously unselected package libxft2:amd64. 91s Preparing to unpack .../013-libxft2_2.3.6-1build1_amd64.deb ... 91s Unpacking libxft2:amd64 (2.3.6-1build1) ... 91s Selecting previously unselected package x11-common. 91s Preparing to unpack .../014-x11-common_1%3a7.7+23ubuntu3_all.deb ... 91s Unpacking x11-common (1:7.7+23ubuntu3) ... 91s Selecting previously unselected package libxss1:amd64. 91s Preparing to unpack .../015-libxss1_1%3a1.2.3-1build3_amd64.deb ... 91s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 91s Selecting previously unselected package libtk8.6:amd64. 91s Preparing to unpack .../016-libtk8.6_8.6.15-1_amd64.deb ... 91s Unpacking libtk8.6:amd64 (8.6.15-1) ... 91s Selecting previously unselected package tk8.6-blt2.5. 92s Preparing to unpack .../017-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 92s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 92s Selecting previously unselected package blt. 92s Preparing to unpack .../018-blt_2.5.3+dfsg-7build1_amd64.deb ... 92s Unpacking blt (2.5.3+dfsg-7build1) ... 92s Selecting previously unselected package libisl23:amd64. 92s Preparing to unpack .../019-libisl23_0.27-1_amd64.deb ... 92s Unpacking libisl23:amd64 (0.27-1) ... 92s Selecting previously unselected package libmpc3:amd64. 92s Preparing to unpack .../020-libmpc3_1.3.1-1build2_amd64.deb ... 92s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 92s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 92s Preparing to unpack .../021-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package cpp-14. 92s Preparing to unpack .../022-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package cpp-x86-64-linux-gnu. 92s Preparing to unpack .../023-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 92s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 92s Selecting previously unselected package cpp. 92s Preparing to unpack .../024-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 92s Unpacking cpp (4:14.1.0-2ubuntu1) ... 92s Selecting previously unselected package libcc1-0:amd64. 92s Preparing to unpack .../025-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libgomp1:amd64. 92s Preparing to unpack .../026-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libitm1:amd64. 92s Preparing to unpack .../027-libitm1_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libasan8:amd64. 92s Preparing to unpack .../028-libasan8_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package liblsan0:amd64. 92s Preparing to unpack .../029-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libtsan2:amd64. 92s Preparing to unpack .../030-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libubsan1:amd64. 92s Preparing to unpack .../031-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libhwasan0:amd64. 92s Preparing to unpack .../032-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libquadmath0:amd64. 92s Preparing to unpack .../033-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package libgcc-14-dev:amd64. 92s Preparing to unpack .../034-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 92s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 92s Preparing to unpack .../035-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 92s Unpacking gcc-14-x86-64-linux-gnu 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previously unselected package g++-14. 93s Preparing to unpack .../041-g++-14_14.2.0-8ubuntu1_amd64.deb ... 93s Unpacking g++-14 (14.2.0-8ubuntu1) ... 93s Selecting previously unselected package g++-x86-64-linux-gnu. 93s Preparing to unpack .../042-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 93s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 93s Selecting previously unselected package g++. 93s Preparing to unpack .../043-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 93s Unpacking g++ (4:14.1.0-2ubuntu1) ... 93s Selecting previously unselected package build-essential. 93s Preparing to unpack .../044-build-essential_12.10ubuntu1_amd64.deb ... 93s Unpacking build-essential (12.10ubuntu1) ... 93s Selecting previously unselected package cython3. 93s Preparing to unpack .../045-cython3_3.0.11+dfsg-1ubuntu2_amd64.deb ... 93s Unpacking cython3 (3.0.11+dfsg-1ubuntu2) ... 94s Selecting previously unselected package libdebhelper-perl. 94s Preparing to unpack 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dh-strip-nondeterminism (1.14.0-1) ... 94s Selecting previously unselected package debugedit. 94s Preparing to unpack .../052-debugedit_1%3a5.1-1_amd64.deb ... 94s Unpacking debugedit (1:5.1-1) ... 94s Selecting previously unselected package dwz. 94s Preparing to unpack .../053-dwz_0.15-1build6_amd64.deb ... 94s Unpacking dwz (0.15-1build6) ... 94s Selecting previously unselected package gettext. 94s Preparing to unpack .../054-gettext_0.22.5-2_amd64.deb ... 94s Unpacking gettext (0.22.5-2) ... 94s Selecting previously unselected package intltool-debian. 94s Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ... 94s Unpacking intltool-debian (0.35.0+20060710.6) ... 94s Selecting previously unselected package po-debconf. 94s Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... 94s Unpacking po-debconf (1.0.21+nmu1) ... 94s Selecting previously unselected package debhelper. 94s Preparing to unpack .../057-debhelper_13.20ubuntu1_all.deb ... 94s Unpacking 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95s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 95s Selecting previously unselected package libdrm-amdgpu1:amd64. 95s Preparing to unpack .../069-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 95s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 95s Selecting previously unselected package libhsakmt1:amd64. 95s Preparing to unpack .../070-libhsakmt1_5.7.0-1build1_amd64.deb ... 95s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 95s Selecting previously unselected package libhsa-runtime64-1. 95s Preparing to unpack .../071-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 95s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 95s Selecting previously unselected package libamdhip64-5. 95s Preparing to unpack .../072-libamdhip64-5_5.7.1-5_amd64.deb ... 95s Unpacking libamdhip64-5 (5.7.1-5) ... 96s Selecting previously unselected package libblas3:amd64. 96s Preparing to unpack .../073-libblas3_3.12.0-3build2_amd64.deb ... 96s Unpacking libblas3:amd64 (3.12.0-3build2) ... 96s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 96s Preparing to unpack .../074-libboost-iostreams1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 96s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 96s Selecting previously unselected package libpixman-1-0:amd64. 96s Preparing to unpack .../075-libpixman-1-0_0.44.0-3_amd64.deb ... 96s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 96s Selecting previously unselected package libxcb-render0:amd64. 96s Preparing to unpack .../076-libxcb-render0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxcb-shm0:amd64. 96s Preparing to unpack .../077-libxcb-shm0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libcairo2:amd64. 96s Preparing to unpack .../078-libcairo2_1.18.2-2_amd64.deb ... 96s Unpacking libcairo2:amd64 (1.18.2-2) ... 96s Selecting previously unselected package libdeflate0:amd64. 96s Preparing to unpack .../079-libdeflate0_1.22-1_amd64.deb ... 96s Unpacking libdeflate0:amd64 (1.22-1) ... 96s Selecting previously unselected package libdouble-conversion3:amd64. 96s Preparing to unpack .../080-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 96s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 96s Selecting previously unselected package libpciaccess0:amd64. 96s Preparing to unpack .../081-libpciaccess0_0.17-3build1_amd64.deb ... 96s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 96s Selecting previously unselected package libdrm-intel1:amd64. 96s Preparing to unpack .../082-libdrm-intel1_2.4.123-1_amd64.deb ... 96s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 96s Selecting previously unselected package libdrm-radeon1:amd64. 96s Preparing to unpack .../083-libdrm-radeon1_2.4.123-1_amd64.deb ... 96s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 96s Selecting previously unselected package libwayland-server0:amd64. 96s Preparing to unpack .../084-libwayland-server0_1.23.0-1_amd64.deb ... 96s Unpacking libwayland-server0:amd64 (1.23.0-1) ... 96s Selecting previously unselected package libxcb-randr0:amd64. 96s Preparing to unpack .../085-libxcb-randr0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libglapi-mesa:amd64. 96s Preparing to unpack .../086-libglapi-mesa_24.2.3-1ubuntu1_amd64.deb ... 96s Unpacking libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libx11-xcb1:amd64. 96s Preparing to unpack .../087-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 96s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 96s Selecting previously unselected package libxcb-dri2-0:amd64. 96s Preparing to unpack .../088-libxcb-dri2-0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxcb-dri3-0:amd64. 96s Preparing to unpack .../089-libxcb-dri3-0_1.17.0-2_amd64.deb ... 96s 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Selecting previously unselected package libgbm1:amd64. 96s Preparing to unpack .../095-libgbm1_24.2.3-1ubuntu1_amd64.deb ... 96s Unpacking libgbm1:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libwayland-client0:amd64. 96s Preparing to unpack .../096-libwayland-client0_1.23.0-1_amd64.deb ... 96s Unpacking libwayland-client0:amd64 (1.23.0-1) ... 96s Selecting previously unselected package libegl-mesa0:amd64. 96s Preparing to unpack .../097-libegl-mesa0_24.2.3-1ubuntu1_amd64.deb ... 96s Unpacking libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 96s Preparing to unpack .../098-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 96s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 96s Selecting previously unselected package libexpat1-dev:amd64. 96s Preparing to unpack .../099-libexpat1-dev_2.6.4-1_amd64.deb ... 96s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 96s Selecting previously unselected package libpsm-infinipath1. 96s Preparing to unpack .../100-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 96s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 96s Selecting previously unselected package libpsm2-2. 96s Preparing to unpack .../101-libpsm2-2_11.2.185-2.1_amd64.deb ... 96s Unpacking libpsm2-2 (11.2.185-2.1) ... 96s Selecting previously unselected package librdmacm1t64:amd64. 96s Preparing to unpack .../102-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 96s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 96s Selecting previously unselected package libfabric1:amd64. 96s Preparing to unpack .../103-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 96s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 96s Selecting previously unselected package libgfortran5:amd64. 96s Preparing to unpack .../104-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libvulkan1:amd64. 97s Preparing to unpack .../105-libvulkan1_1.3.296.0-1_amd64.deb ... 97s Unpacking libvulkan1:amd64 (1.3.296.0-1) ... 97s Selecting previously unselected package libgl1-mesa-dri:amd64. 97s Preparing to unpack .../106-libgl1-mesa-dri_24.2.3-1ubuntu1_amd64.deb ... 97s Unpacking libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 97s Selecting previously unselected package libglvnd0:amd64. 97s Preparing to unpack .../107-libglvnd0_1.7.0-1build1_amd64.deb ... 97s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 97s Selecting previously unselected package libxcb-glx0:amd64. 97s Preparing to unpack .../108-libxcb-glx0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxfixes3:amd64. 97s Preparing to unpack .../109-libxfixes3_1%3a6.0.0-2build1_amd64.deb ... 97s Unpacking libxfixes3:amd64 (1:6.0.0-2build1) ... 97s Selecting previously unselected package libxxf86vm1:amd64. 97s Preparing to unpack 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(2.2.0-4build1) ... 97s Selecting previously unselected package libgraphite2-3:amd64. 97s Preparing to unpack .../116-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 97s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 97s Selecting previously unselected package libharfbuzz0b:amd64. 97s Preparing to unpack .../117-libharfbuzz0b_10.0.1-1_amd64.deb ... 97s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 97s Selecting previously unselected package libsz2:amd64. 97s Preparing to unpack .../118-libsz2_1.1.3-1_amd64.deb ... 97s Unpacking libsz2:amd64 (1.1.3-1) ... 97s Selecting previously unselected package libhdf5-103-1t64:amd64. 97s Preparing to unpack .../119-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 97s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 97s Selecting previously unselected package libhdf5-hl-100t64:amd64. 97s Preparing to unpack .../120-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 97s Unpacking libhdf5-hl-100t64:amd64 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libsm6:amd64. 99s Preparing to unpack .../174-libsm6_2%3a1.2.4-1_amd64.deb ... 99s Unpacking libsm6:amd64 (2:1.2.4-1) ... 99s Selecting previously unselected package libxcb-icccm4:amd64. 99s Preparing to unpack .../175-libxcb-icccm4_0.4.2-1_amd64.deb ... 99s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 99s Selecting previously unselected package libxcb-util1:amd64. 99s Preparing to unpack .../176-libxcb-util1_0.4.0-1build3_amd64.deb ... 99s Unpacking libxcb-util1:amd64 (0.4.0-1build3) ... 99s Selecting previously unselected package libxcb-image0:amd64. 99s Preparing to unpack .../177-libxcb-image0_0.4.0-2build1_amd64.deb ... 99s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 99s Selecting previously unselected package libxcb-keysyms1:amd64. 99s Preparing to unpack .../178-libxcb-keysyms1_0.4.0-1build4_amd64.deb ... 99s Unpacking libxcb-keysyms1:amd64 (0.4.0-1build4) ... 99s Selecting previously unselected package libxcb-render-util0:amd64. 99s Preparing to unpack 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package python3-pandas. 107s Preparing to unpack .../258-python3-pandas_2.2.3+dfsg-5_all.deb ... 107s Unpacking python3-pandas (2.2.3+dfsg-5) ... 107s Selecting previously unselected package python3-pydantic-core. 107s Preparing to unpack .../259-python3-pydantic-core_2.23.4-2build1_amd64.deb ... 107s Unpacking python3-pydantic-core (2.23.4-2build1) ... 107s Selecting previously unselected package python3-pydantic. 107s Preparing to unpack .../260-python3-pydantic_2.9.1-1_amd64.deb ... 107s Unpacking python3-pydantic (2.9.1-1) ... 107s Selecting previously unselected package python3-tqdm. 107s Preparing to unpack .../261-python3-tqdm_4.67.0-1_all.deb ... 107s Unpacking python3-tqdm (4.67.0-1) ... 107s Selecting previously unselected package python3-monty. 107s Preparing to unpack .../262-python3-monty_2024.7.29-1_all.deb ... 107s Unpacking python3-monty (2024.7.29-1) ... 107s Selecting previously unselected package python3-latexcodec. 107s Preparing to unpack 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update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 143s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 143s Setting up mpi-default-bin (1.17) ... 143s Setting up debhelper (13.20ubuntu1) ... 143s Setting up python3-mpi4py (3.1.6-9ubuntu1) ... 143s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-1build1) ... 143s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-1build1) ... 143s Setting up python3-vtk9 (9.3.0+dfsg1-1build1) ... 143s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 143s patn = re.compile (" \S") 143s Setting up python3-fonttools (4.46.0-1build2) ... 144s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 144s Setting up python3-matplotlib (3.8.3-3ubuntu1) ... 145s Setting up python3-ase (3.23.0-1) ... 147s Setting up python3-phonopy (2.23.1-1) ... 147s Setting up python3-pymatgen (2024.6.10+dfsg1-8) ... 148s /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:115: SyntaxWarning: invalid escape sequence '\+' 148s pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") 148s Setting up python3-emmet-core (0.76.2-1) ... 149s Processing triggers for libc-bin (2.40-1ubuntu3) ... 149s Processing triggers for man-db (2.13.0-1) ... 150s Processing triggers for udev (256.5-2ubuntu4) ... 151s Processing triggers for install-info (7.1.1-1) ... 151s Processing triggers for sgml-base (1.31) ... 151s Setting up docutils-common (0.21.2+dfsg-2) ... 151s Processing triggers for sgml-base (1.31) ... 151s Setting up python3-docutils (0.21.2+dfsg-2) ... 151s Setting up python3-sphinx (7.4.7-4) ... 152s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 152s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 152s Setting up autopkgtest-satdep (0) ... 160s (Reading database ... 118631 files and directories currently installed.) 160s Removing autopkgtest-satdep (0) ... 161s autopkgtest [13:44:26]: test test-pymatgen: [----------------------- 161s skipping tests with SKIP_TEST_LIST=TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_rotor_search_rrs BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_CifWriter test_read_write test_init test_get_site_symmetries test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit test_rotor_search_wrs 181s ============================= test session starts ============================== 181s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 181s rootdir: /tmp/autopkgtest.petRaz/build.F6Z/src 181s configfile: pyproject.toml 181s plugins: typeguard-4.4.1 181s collected 2924 items / 297 deselected / 2 skipped / 2627 selected 181s 182s tests/alchemy/test_filters.py ....... 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[ 5%] 244s tests/analysis/interfaces/test_zsl.py .. [ 5%] 252s tests/analysis/magnetism/test_analyzer.py .........s. [ 6%] 252s tests/analysis/magnetism/test_heisenberg.py ....... [ 6%] 253s tests/analysis/magnetism/test_jahnteller.py ... [ 6%] 254s tests/analysis/solar/test_slme.py . [ 6%] 255s tests/analysis/structure_prediction/test_dopant_predictor.py .. [ 6%] 255s tests/analysis/structure_prediction/test_substitution_probability.py ... [ 6%] 255s [ 6%] 255s tests/analysis/structure_prediction/test_substitutor.py .. [ 6%] 255s tests/analysis/structure_prediction/test_volume_predictor.py ... [ 6%] 290s tests/analysis/test_adsorption.py ...... [ 7%] 292s tests/analysis/test_bond_dissociation.py ... [ 7%] 292s tests/analysis/test_bond_valence.py .... [ 7%] 294s tests/analysis/test_chempot_diagram.py ........... [ 7%] 294s tests/analysis/test_cost.py .... [ 8%] 298s tests/analysis/test_dimensionality.py .......... [ 8%] 298s tests/analysis/test_disorder.py . [ 8%] 298s tests/analysis/test_energy_models.py ...... [ 8%] 299s tests/analysis/test_eos.py ...... [ 8%] 299s tests/analysis/test_ewald.py ... [ 9%] 336s tests/analysis/test_fragmenter.py .......... [ 9%] 336s tests/analysis/test_functional_groups.py ...... [ 9%] 347s tests/analysis/test_graphs.py ..s............................... [ 10%] 347s tests/analysis/test_hhi.py . [ 10%] 348s tests/analysis/test_interface_reactions.py .................. [ 11%] 360s tests/analysis/test_local_env.py ....................................s.. [ 13%] 360s ... [ 13%] 360s tests/analysis/test_molecule_matcher.py ................................ [ 14%] 361s .......................... [ 15%] 361s tests/analysis/test_molecule_structure_comparator.py .... [ 15%] 361s tests/analysis/test_nmr.py ...... [ 15%] 363s tests/analysis/test_phase_diagram.py ................................... [ 17%] 373s .................................................. [ 19%] 373s tests/analysis/test_piezo.py ... 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[ 25%] 439s tests/apps/battery/test_insertion_battery.py ......... [ 25%] 439s tests/apps/battery/test_plotter.py .. [ 25%] 439s tests/apps/borg/test_hive.py ........ [ 25%] 439s tests/apps/borg/test_queen.py .. [ 25%] 439s tests/command_line/test_bader_caller.py ssss [ 25%] 439s tests/command_line/test_chargemol_caller.py .. [ 26%] 439s tests/command_line/test_critic2_caller.py ss.. [ 26%] 439s tests/command_line/test_enumlib_caller.py sss [ 26%] 439s tests/command_line/test_gulp_caller.py sssssssssssssssssssssssssss [ 27%] 439s tests/command_line/test_mcsqs_caller.py sssssss [ 27%] 439s tests/command_line/test_vampire_caller.py s [ 27%] 439s tests/core/test_bonds.py ....... [ 27%] 439s tests/core/test_composition.py ......................................... [ 29%] 439s ............ [ 29%] 450s tests/core/test_interface.py ...................... [ 30%] 450s tests/core/test_ion.py ............... [ 31%] 450s tests/core/test_lattice.py ................................ 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[ 45%] 568s tests/electronic_structure/test_bandstructure.py ....................... [ 46%] 574s ......... [ 46%] 574s tests/electronic_structure/test_boltztrap.py sssssssssssssss [ 47%] 574s tests/electronic_structure/test_boltztrap2.py ssssssssssssss [ 47%] 600s tests/electronic_structure/test_cohp.py .............................. [ 48%] 600s tests/electronic_structure/test_core.py .......... [ 49%] 609s tests/electronic_structure/test_dos.py ......................... [ 50%] 658s tests/electronic_structure/test_plotter.py ...............ssssssssssssss [ 51%] 659s sssss..... [ 51%] 659s tests/entries/test_compatibility.py .................................... [ 53%] 660s ................................................. [ 55%] 660s tests/entries/test_computed_entries.py ................................. [ 56%] 660s ... [ 56%] 662s tests/entries/test_correction_calculator.py .... [ 56%] 672s tests/entries/test_entry_tools.py ....... [ 56%] 672s tests/entries/test_exp_entries.py ... [ 56%] 673s tests/entries/test_mixing_scheme.py ............................... [ 58%] 673s tests/ext/test_cod.py ss [ 58%] 673s tests/ext/test_matproj.py sssssssssssssssssssssssssssssssssssssssss [ 59%] 774s tests/ext/test_optimade.py ..F.. [ 59%] 774s tests/io/abinit/test_abiobjects.py ......... [ 60%] 774s tests/io/abinit/test_inputs.py ........ [ 60%] 774s tests/io/abinit/test_netcdf.py .. [ 60%] 774s tests/io/abinit/test_pseudos.py ..... [ 60%] 774s tests/io/aims/test_aims_inputs.py .... [ 61%] 774s tests/io/aims/test_aims_outputs.py ...... [ 61%] 774s tests/io/aims/test_aims_parsers.py ..................................... [ 62%] 774s ....................................................... [ 64%] 775s tests/io/cp2k/test_inputs.py .............. [ 65%] 775s tests/io/cp2k/test_outputs.py ....... [ 65%] 775s tests/io/exciting/test_inputs.py .... [ 65%] 775s tests/io/feff/test_inputs.py .................. [ 66%] 775s tests/io/feff/test_outputs.py ...... 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[ 85%] 976s tests/io/vasp/test_outputs.py .......................................... [ 86%] 1017s .............................................................. [ 89%] 1017s tests/io/xtb/test_inputs.py .. [ 89%] 1017s tests/optimization/test_linear_assignment.py .... [ 89%] 1017s tests/optimization/test_neighbors.py . [ 89%] 1018s tests/phonon/test_bandstructure.py ........... [ 90%] 1019s tests/phonon/test_dos.py ................ [ 90%] 1194s tests/phonon/test_gruneisen.py ............. [ 91%] 1194s tests/phonon/test_ir_spectra.py . [ 91%] 1201s tests/phonon/test_plotter.py ........ [ 91%] 1201s tests/phonon/test_thermal_displacements.py .............. [ 92%] 1204s tests/symmetry/test_analyzer.py ................................ [ 93%] 1227s tests/symmetry/test_groups.py ..................... [ 94%] 1227s tests/symmetry/test_kpath_hin.py ss [ 94%] 1252s tests/symmetry/test_kpath_lm.py ... [ 94%] 1264s tests/symmetry/test_kpath_sc.py .. [ 94%] 1264s tests/symmetry/test_kpaths.py .s [ 94%] 1265s tests/symmetry/test_maggroups.py ...... [ 94%] 1265s tests/symmetry/test_settings.py .... [ 94%] 1265s tests/symmetry/test_site_symmetries.py . [ 94%] 1276s tests/test_cli.py ... [ 94%] 1276s tests/test_pkg.py s [ 94%] 1276s tests/transformations/test_advanced_transformations.py .s..sssss..ssssss [ 95%] 1277s ss...ssssss...s [ 96%] 1277s tests/transformations/test_site_transformations.py ...........s...... [ 96%] 1278s tests/transformations/test_standard_transformations.py ............ssss. [ 97%] 1281s ........... [ 97%] 1281s tests/util/test_coord.py ...................... [ 98%] 1281s tests/util/test_graph_hashing.py ss [ 98%] 1281s tests/util/test_io.py . [ 98%] 1281s tests/util/test_num.py . [ 98%] 1281s tests/util/test_plotting.py .. [ 98%] 1281s tests/util/test_provenance.py ........ [ 99%] 1282s tests/util/test_string.py ........... [ 99%] 1282s tests/util/test_typing.py ..... [ 99%] 1282s tests/vis/test_plotters.py ... [100%] 1282s 1282s =================================== FAILURES =================================== 1282s ___________________ TestOptimade.test_get_structures_mcloud ____________________ 1282s 1282s self = 1282s 1282s @pytest.mark.skipif(mc3d_down or mc2d_down, reason="At least one MC OPTIMADE API is down.") 1282s def test_get_structures_mcloud(self): 1282s with OptimadeRester(["mcloud.mc2d", "mcloud.mc3d"]) as optimade: 1282s structs = optimade.get_structures(elements=["B", "N"], nelements=2) 1282s 1282s > test_struct = next(iter(structs["mcloud.mc2d"].values())) 1282s E KeyError: 'mcloud.mc2d' 1282s 1282s /tmp/autopkgtest.petRaz/build.F6Z/src/tests/ext/test_optimade.py:86: KeyError 1282s ----------------------------- Captured stdout call ----------------------------- 1282s Failed to parse https://aiida.materialscloud.org/mc2d/optimade/v1/info when validating: HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s Failed to parse https://aiida.materialscloud.org/mc3d/optimade/v1/info when validating: HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s Could not retrieve required information from provider mcloud.mc2d and url='https://aiida.materialscloud.org/mc2d/optimade/v1/structures?filter=(elements HAS ALL "B", "N") AND (nelements=2)&response_fields=species_at_sites,species,lattice_vectors,cartesian_site_positions': HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s Could not retrieve required information from provider mcloud.mc3d and url='https://aiida.materialscloud.org/mc3d/optimade/v1/structures?filter=(elements HAS ALL "B", "N") AND (nelements=2)&response_fields=species_at_sites,species,lattice_vectors,cartesian_site_positions': HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s ------------------------------ Captured log call ------------------------------- 1282s WARNING pymatgen.ext.optimade:optimade.py:481 Failed to parse https://aiida.materialscloud.org/mc2d/optimade/v1/info when validating: HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s WARNING pymatgen.ext.optimade:optimade.py:481 Failed to parse https://aiida.materialscloud.org/mc3d/optimade/v1/info when validating: HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s ERROR pymatgen.ext.optimade:optimade.py:362 Could not retrieve required information from provider mcloud.mc2d and url='https://aiida.materialscloud.org/mc2d/optimade/v1/structures?filter=(elements HAS ALL "B", "N") AND (nelements=2)&response_fields=species_at_sites,species,lattice_vectors,cartesian_site_positions': HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s ERROR pymatgen.ext.optimade:optimade.py:362 Could not retrieve required information from provider mcloud.mc3d and url='https://aiida.materialscloud.org/mc3d/optimade/v1/structures?filter=(elements HAS ALL "B", "N") AND (nelements=2)&response_fields=species_at_sites,species,lattice_vectors,cartesian_site_positions': HTTPSConnectionPool(host='aiida.materialscloud.org', port=443): Read timed out. (read timeout=5) 1282s ============================= slowest 30 durations ============================= 1282s 71.96s call tests/ext/test_optimade.py::TestOptimade::test_update_aliases 1282s 27.92s call tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 1282s 25.10s call tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 1282s 22.97s call tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 1282s 21.45s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 1282s 20.30s call tests/ext/test_optimade.py::TestOptimade::test_get_structures_mcloud 1282s 15.48s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 1282s 15.40s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 1282s 15.36s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 1282s 15.27s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 1282s 15.15s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 1282s 15.10s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 1282s 14.91s call tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 1282s 14.84s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 1282s 14.69s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 1282s 14.66s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 1282s 14.54s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 1282s 12.77s call tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 1282s 12.24s call tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1282s 12.24s call tests/io/vasp/test_optics.py::TestVasprun::test_optics 1282s 12.03s call tests/analysis/test_prototypes.py::TestAflowPrototypeMatcher::test_prototype_matching 1282s 11.88s call tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 1282s 11.57s call tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation 1282s 11.14s call tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 1282s 10.32s call tests/core/test_trajectory.py::TestTrajectory::test_extend 1282s 10.16s call tests/symmetry/test_groups.py::TestSpaceGroup::test_order_symm_ops 1282s 9.51s call tests/core/test_surface.py::TestSlab::test_symmetrization 1282s 9.36s call tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior 1282s 9.35s call tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states 1282s 8.99s call tests/core/test_trajectory.py::TestTrajectory::test_conversion 1282s =========================== short test summary info ============================ 1282s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 1282s SKIPPED [1] tests/io/test_shengbte.py:11: could not import 'f90nml': No module named 'f90nml' 1282s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:255: enumlib not present 1282s SKIPPED [1] tests/analysis/test_graphs.py:341: graphviz executables not present 1282s SKIPPED [1] tests/analysis/test_local_env.py:1333: critic2 executable not present 1282s SKIPPED [1] tests/command_line/test_bader_caller.py:118: bader executable not present 1282s SKIPPED [1] tests/command_line/test_bader_caller.py:86: bader executable not present 1282s SKIPPED [1] tests/command_line/test_bader_caller.py:68: bader executable not present 1282s SKIPPED [1] tests/command_line/test_bader_caller.py:133: bader executable not present 1282s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present 1282s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present 1282s SKIPPED [1] tests/command_line/test_enumlib_caller.py:92: enum_lib not present. 1282s SKIPPED [1] tests/command_line/test_enumlib_caller.py:80: enum_lib not present. 1282s SKIPPED [1] tests/command_line/test_enumlib_caller.py:122: enum_lib not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:68: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:169: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:142: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:248: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:108: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:133: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:138: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:129: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:124: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:259: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:194: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:290: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:302: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:285: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:326: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:322: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:333: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:329: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:353: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:343: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:349: gulp not present. 1282s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present. 1282s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:63: mcsqs executable not present 1282s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:97: mcsqs executable not present 1282s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present 1282s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:47: mcsqs executable not present 1282s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:55: mcsqs executable not present 1282s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:73: mcsqs executable not present 1282s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:85: mcsqs executable not present 1282s SKIPPED [1] tests/command_line/test_vampire_caller.py:35: vampire executable not present 1282s SKIPPED [1] tests/core/test_structure.py:91: enumlib or mcsqs executable not present 1282s SKIPPED [1] tests/core/test_structure.py:1696: could not import 'chgnet': No module named 'chgnet' 1282s SKIPPED [1] tests/core/test_structure.py:1761: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved 1282s SKIPPED [1] tests/core/test_structure.py:1673: could not import 'chgnet': No module named 'chgnet' 1282s SKIPPED [1] tests/core/test_structure.py:1773: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved 1282s SKIPPED [1] tests/core/test_structure.py:1784: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved 1282s SKIPPED [1] tests/core/test_structure.py:1793: TODO remove skip once https://github.com/materialsvirtuallab/matgl/issues/238 is resolved 1282s SKIPPED [1] tests/core/test_structure.py:2400: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 1282s SKIPPED [1] tests/core/test_structure.py:2410: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 1282s SKIPPED [1] tests/core/test_surface.py:667: This test relies on neighbor orders and is hard coded. Disable temporarily 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:244: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:231: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:172: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:194: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:222: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:104: No FDINT 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:126: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:198: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:135: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:119: No x_trans. 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:89: No FDINT 1282s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:202: No x_trans. 1282s SKIPPED [1] 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down. 1282s SKIPPED [1] tests/ext/test_matproj.py:649: PMG_MAPI_KEY environment variable not set or MP API is down. 1282s SKIPPED [1] tests/ext/test_matproj.py:691: PMG_MAPI_KEY environment variable not set or MP API is down. 1282s SKIPPED [1] tests/ext/test_matproj.py:872: PMG_MAPI_KEY environment variable not set or MP API is down. 1282s SKIPPED [1] tests/io/test_ase.py:356: ase is present 1282s SKIPPED [1] tests/io/test_cif.py:284: non-free PF*.cif test files are not available 1282s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded. 1282s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded. 1282s SKIPPED [1] tests/io/test_zeopp.py:72: zeo not present 1282s SKIPPED [1] tests/io/test_zeopp.py:41: zeo not present 1282s SKIPPED [1] tests/io/test_zeopp.py:116: zeo not present 1282s SKIPPED [1] tests/io/test_zeopp.py:85: zeo not present 1282s SKIPPED [1] tests/io/test_zeopp.py:147: zeo not present 1282s SKIPPED [1] tests/io/test_zeopp.py:136: zeo not present 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Run `pip install .` to create 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:99: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:160: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:190: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:206: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:233: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:245: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:360: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:300: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:338: enum_lib not present. 1282s SKIPPED [1] 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tests/transformations/test_advanced_transformations.py:677: icet not installed. 1282s SKIPPED [1] tests/transformations/test_advanced_transformations.py:784: hiphive not present 1282s SKIPPED [1] tests/transformations/test_site_transformations.py:213: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_standard_transformations.py:221: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_standard_transformations.py:235: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_standard_transformations.py:246: enum_lib not present. 1282s SKIPPED [1] tests/transformations/test_standard_transformations.py:252: enum_lib not present. 1282s SKIPPED [1] tests/util/test_graph_hashing.py:44: could not import 'emmet.core.graph_hashing': No module named 'emmet.core.graph_hashing' 1282s SKIPPED [1] tests/util/test_graph_hashing.py:61: could not import 'emmet.core.graph_hashing': No module named 'emmet.core.graph_hashing' 1282s === 1 failed, 2432 passed, 196 skipped, 297 deselected in 1120.47s (0:18:40) === 1282s ..tot conformations = 3 1282s ..tot confs tested = 3 1282s ..below energy threshold = 3 1285s autopkgtest [14:03:10]: test test-pymatgen: -----------------------] 1286s test-pymatgen FAIL non-zero exit status 1 1286s autopkgtest [14:03:11]: test test-pymatgen: - - - - - - - - - - results - - - - - - - - - - 1286s autopkgtest [14:03:11]: test test-pymatgen-net: preparing testbed 1334s autopkgtest [14:03:59]: testbed dpkg architecture: amd64 1334s autopkgtest [14:03:59]: testbed apt version: 2.9.8 1334s autopkgtest [14:03:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1335s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 1336s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 1336s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 1336s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.2 kB] 1336s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1062 kB] 1336s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [174 kB] 1336s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [108 kB] 1336s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 1336s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [300 kB] 1336s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [840 kB] 1336s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 1336s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 1336s Fetched 2718 kB in 1s (3225 kB/s) 1336s Reading package lists... 1339s Reading package lists... 1340s Building dependency tree... 1340s Reading state information... 1340s Calculating upgrade... 1340s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1340s Reading package lists... 1340s Building dependency tree... 1340s Reading state information... 1340s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1341s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 1341s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 1341s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 1341s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 1342s Reading package lists... 1342s Reading package lists... 1342s Building dependency tree... 1342s Reading state information... 1342s Calculating upgrade... 1342s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1342s Reading package lists... 1342s Building dependency tree... 1342s Reading state information... 1343s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1346s Reading package lists... 1347s Building dependency tree... 1347s Reading state information... 1347s Starting pkgProblemResolver with broken count: 0 1347s Starting 2 pkgProblemResolver with broken count: 0 1347s Done 1347s The following additional packages will be installed: 1347s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 1347s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 1347s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 1347s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1347s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 1347s fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 1347s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 1347s libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3 1347s libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0 1347s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libdrm-radeon1 1347s libegl-mesa0 libegl1 libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 1347s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 1347s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 1347s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b 1347s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 libhwasan0 1347s libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 1347s libinchi1 libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 1347s libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax 1347s libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp25 liblapack3 1347s liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 1347s libmd4c0 libmpc3 libmtdev1t64 libmunge2 libnetcdf19t64 libogg0 libopenbabel7 1347s libopengl0 libopenjp2-7 libopenmpi3t64 libpciaccess0 libpcre2-16-0 1347s libpixman-1-0 libpmix2t64 libproj25 libpsm-infinipath1 libpsm2-2 1347s libpython3-all-dev libpython3-dev libpython3.12-dev libqhull-r8.0 1347s libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 libqt5network5t64 1347s libqt5widgets5t64 libquadmath0 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 1347s libstdc++-14-dev libsymspg2 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 1347s libtcl8.6 libtheora0 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libucx0 1347s libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common libwacom9 1347s libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 1347s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 1347s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 1347s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 1347s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 1347s libxfixes3 libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 1347s libxslt1.1 libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin 1347s ocl-icd-libopencl1 openmpi-bin openmpi-common packmol po-debconf proj-data 1347s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 1347s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 1347s python3-annotated-types python3-appdirs python3-ase python3-brotli 1347s python3-bs4 python3-bson python3-build python3-cftime python3-contourpy 1347s python3-cycler python3-dateutil python3-decorator python3-defusedxml 1347s python3-dev python3-dnspython python3-docutils python3-dotenv 1347s python3-email-validator python3-emmet-core python3-fastjsonschema 1347s python3-fonttools python3-frozendict python3-fs python3-h5py 1347s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 1347s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 1347s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 1347s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 1347s python3-numpy python3-openbabel python3-packaging python3-palettable 1347s python3-pandas python3-pandas-lib python3-phonopy python3-pil 1347s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 1347s python3-pybtex python3-pydantic python3-pydantic-core 1347s python3-pydantic-settings python3-pymatgen python3-pyproject-hooks 1347s python3-pytest python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib 1347s python3-scipy python3-six python3-snowballstemmer python3-soupsieve 1347s python3-spglib python3-sphinx python3-sphinx-rtd-theme 1347s python3-sphinxcontrib.jquery python3-sympy python3-tabulate python3-tenacity 1347s python3-tk python3-toml python3-tqdm python3-traitlets python3-tz 1347s python3-ufolib2 python3-uncertainties python3-unicodedata2 python3-vtk9 1347s python3-wheel python3.12-dev python3.12-tk sgml-base sphinx-common 1347s sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common xml-core 1347s zlib1g-dev 1347s Suggested packages: 1347s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 1347s cpp-14-doc cython-doc dh-make flit g++-multilib g++-14-multilib gcc-14-doc 1347s gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-14-multilib 1347s gdb-x86-64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev glew-utils 1347s libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 1347s fonts-stix libjs-mathjax-doc liblcms2-utils proj-bin libthai0 1347s qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-14-doc tcl8.6 tk8.6 1347s libtool-doc gfortran | fortran95-compiler gcj-jdk vtk9-doc vtk9-examples 1347s libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler libmail-box-perl 1347s python-ase-doc python3-pycodcif python3-pip python3-venv python-build-doc 1347s python-cycler-doc python3-trio python3-aioquic python3-h2 python3-httpx 1347s python3-httpcore docutils-doc fonts-linuxlibertine | ttf-linux-libertine 1347s texlive-lang-french texlive-latex-base texlive-latex-recommended 1347s python-fastjsonschema-doc python-h5py-doc python-installer-doc 1347s python-joblib-doc python-latexcodec-doc python-lxml-doc cm-super-minimal 1347s dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 1347s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 1347s python3-gobject python3-pyqt5 python3-sip python3-tornado 1347s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 1347s python3-gdal python3-pydot python3-pygraphviz gfortran python-numpy-doc 1347s python-pandas-doc python3-statsmodels python-pil-doc python3-ipykernel 1347s python-pybtex-doc python3-mp-api python-scipy-doc python3-stemmer dvisvgm 1347s fonts-freefont-otf imagemagick-6.q16 latexmk sphinx-doc tex-gyre 1347s texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic 1347s python-sympy-doc python-tenacity-doc tix python3-tk-dbg python3.13-tk 1347s python-traitlets-doc python-uncertainties-doc mayavi2 sgml-base-doc 1347s Recommended packages: 1347s libarchive-cpio-perl libgl1-amber-dri javascript-common libjson-xs-perl 1347s qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 libltdl-dev 1347s mesa-vulkan-drivers | vulkan-icd tcl libmail-sendmail-perl python3-bson-ext 1347s libpaper-utils python3-simplejson python3-psutil python3-cssselect 1347s python3-html5lib python-monty-doc python3-torch python3-bottleneck 1347s python3-numexpr python3-odf python3-openpyxl python3-tables python3-numba 1347s python3-olefile python3-tomli isympy-common 1347s The following NEW packages will be installed: 1347s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 1347s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 1347s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 1347s docutils-common dwz fontconfig fontconfig-config fonts-dejavu-core 1347s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lato 1347s fonts-lyx fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu 1347s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 1347s gettext intltool-debian libaec0 libamd-comgr2 libamdhip64-5 1347s libarchive-zip-perl libasan8 libblas3 libboost-iostreams1.83.0 libcairo2 1347s libcc1-0 libdebhelper-perl libdeflate0 libdouble-conversion3 libdrm-amdgpu1 1347s libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 libevent-pthreads-2.1-7t64 1347s libexpat1-dev libfabric1 libfile-stripnondeterminism-perl libfontconfig1 1347s libgbm1 libgcc-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 1347s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 1347s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 1347s libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins libhwloc15 1347s libibmad5 libibumad3 libice6 libimagequant0 libinchi1 libinput-bin 1347s libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 1347s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore 1347s libjson-perl libjsoncpp25 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 1347s libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3 libmtdev1t64 1347s libmunge2 libnetcdf19t64 libogg0 libopenbabel7 libopengl0 libopenjp2-7 1347s libopenmpi3t64 libpciaccess0 libpcre2-16-0 libpixman-1-0 libpmix2t64 1347s libproj25 libpsm-infinipath1 libpsm2-2 libpython3-all-dev libpython3-dev 1347s libpython3.12-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 1347s libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0 librdmacm1t64 1347s libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2 libtbb12 1347s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtiff6 libtk8.6 libtool 1347s libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt libvulkan1 libwacom-common 1347s libwacom9 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 1347s libwebpmux3 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 1347s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 1347s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 1347s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 1347s libxfixes3 libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 1347s libxslt1.1 libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin 1347s ocl-icd-libopencl1 openmpi-bin openmpi-common packmol po-debconf proj-data 1347s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 1347s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 1347s python3-annotated-types python3-appdirs python3-ase python3-brotli 1347s python3-bs4 python3-bson python3-build python3-cftime python3-contourpy 1347s python3-cycler python3-dateutil python3-decorator python3-defusedxml 1347s python3-dev python3-dnspython python3-docutils python3-dotenv 1347s python3-email-validator python3-emmet-core python3-fastjsonschema 1347s python3-fonttools python3-frozendict python3-fs python3-h5py 1347s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 1347s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 1347s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 1347s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 1347s python3-numpy python3-openbabel python3-packaging python3-palettable 1347s python3-pandas python3-pandas-lib python3-phonopy python3-pil 1347s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 1347s python3-pybtex python3-pydantic python3-pydantic-core 1347s python3-pydantic-settings python3-pymatgen python3-pyproject-hooks 1347s python3-pytest python3-roman python3-ruamel.yaml python3-ruamel.yaml.clib 1347s python3-scipy python3-six python3-snowballstemmer python3-soupsieve 1347s python3-spglib python3-sphinx python3-sphinx-rtd-theme 1347s python3-sphinxcontrib.jquery python3-sympy python3-tabulate python3-tenacity 1347s python3-tk python3-toml python3-tqdm python3-traitlets python3-tz 1347s python3-ufolib2 python3-uncertainties python3-unicodedata2 python3-vtk9 1347s python3-wheel python3.12-dev python3.12-tk sgml-base sphinx-common 1347s sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common xml-core 1347s zlib1g-dev 1347s 0 upgraded, 302 newly installed, 0 to remove and 0 not upgraded. 1347s Need to get 532 MB/532 MB of archives. 1347s After this operation, 2026 MB of additional disk space will be used. 1347s Get:1 /tmp/autopkgtest.petRaz/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [1128 B] 1347s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 1348s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 1348s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 1348s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 1348s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 1348s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 1348s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 1348s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 1348s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1348s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1348s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 1348s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 1348s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 1348s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 1348s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1348s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 1348s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 1348s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 1348s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 1348s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 1348s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 1348s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 1349s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 1349s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 1349s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 1349s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 1349s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 1349s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 1349s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 1349s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 1349s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 1349s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 1349s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 1349s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 1349s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 1350s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 1351s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 1351s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 1351s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 1351s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 1352s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 1352s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 1352s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 1352s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 1352s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 1352s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu2 [3368 kB] 1353s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 1353s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 1353s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 1353s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 1353s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 1353s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 1353s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 1353s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 1353s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 1353s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 1353s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 1353s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 1353s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 1353s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 1353s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 1353s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 1353s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1353s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1353s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 1353s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1353s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 1353s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 1356s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 1358s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 1358s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 1358s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 1358s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 1359s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 1359s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3.2ubuntu2 [260 kB] 1359s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 1359s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 1359s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 1359s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 1359s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 1359s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 1359s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 1359s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 1359s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 1359s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB] 1359s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 1359s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.3-1ubuntu1 [42.4 kB] 1359s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 1359s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 1359s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 1359s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 1359s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 1359s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 1359s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 1359s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.3-1ubuntu1 [9904 kB] 1361s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.3-1ubuntu1 [32.0 kB] 1361s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB] 1361s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.3-1ubuntu1 [129 kB] 1361s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 1361s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 1361s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 1361s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 1361s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 1361s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 1361s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 1361s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB] 1361s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.3-1ubuntu1 [34.4 kB] 1361s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 1361s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 1361s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 1361s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 1361s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.3-1ubuntu1 [153 kB] 1361s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 1361s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 1361s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 1361s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 1361s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 1361s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 1362s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 1362s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 1362s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 1362s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 1362s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 1362s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 1362s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libinchi1 amd64 1.03+dfsg-4build1 [463 kB] 1362s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.13.0-1 [98.6 kB] 1362s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.13.0-1 [25.1 kB] 1362s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.26.2-1 [22.8 kB] 1362s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [14.4 kB] 1362s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.26.2-1 [137 kB] 1362s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 1362s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1362s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1362s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1362s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1362s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1362s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 1362s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 1362s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp25 amd64 1.9.5-6build1 [82.8 kB] 1362s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 1362s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 1362s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 1362s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 1362s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 1362s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 1362s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 1362s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 1362s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 1362s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu1 [3333 kB] 1362s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 1362s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 1362s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 1362s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 1362s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 1363s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 1363s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 1363s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 1363s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi3t64 amd64 4.1.6-13.3ubuntu2 [2575 kB] 1363s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 1363s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.0-1 [7919 kB] 1363s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 1363s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 1363s Get:164 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 1363s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 1363s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.0-1 [1500 kB] 1363s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 1363s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 1363s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.12.6-0ubuntu1 [10.2 kB] 1363s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.12.6-0ubuntu1 [916 B] 1363s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 1363s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu1 [2036 kB] 1363s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu1 [221 kB] 1363s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 1363s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu1 [724 kB] 1363s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 1363s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 1363s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.0-1build3 [10.7 kB] 1363s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 1363s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.0-1build4 [7956 B] 1363s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.9-1build4 [9608 B] 1364s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 1364s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 1364s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 1364s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 1364s Get:186 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1build1 [14.5 kB] 1364s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu1 [3791 kB] 1364s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu1 [2561 kB] 1364s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 1364s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.4.0-1ubuntu1 [209 kB] 1364s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2021.12.0-1ubuntu2 [52.5 kB] 1364s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2021.12.0-1ubuntu2 [15.4 kB] 1364s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2021.12.0-1ubuntu2 [89.3 kB] 1364s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libtheora0 amd64 1.1.1+dfsg.1-17 [211 kB] 1364s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 1364s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-1build1 [25.3 MB] 1364s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-1build1 [182 kB] 1364s Get:198 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 1364s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 1364s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 1364s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 4.1.6-13.3ubuntu2 [170 kB] 1364s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 4.1.6-13.3ubuntu2 [114 kB] 1364s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 packmol amd64 1:20.14.3-1 [120 kB] 1365s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 1365s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 1365s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 1365s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 1365s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 1365s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 1365s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 1365s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymatgen-test-files all 2024.10.29-1 [213 MB] 1374s Get:212 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 1374s Get:213 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1374s Get:214 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 1374s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-pymatgen-doc all 2024.6.10+dfsg1-8 [1107 kB] 1374s Get:216 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 1374s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 1374s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.12.6-0ubuntu1 [26.7 kB] 1374s Get:219 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.12.6-0ubuntu1 [908 B] 1374s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 1374s Get:221 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 1374s Get:222 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 1374s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 1374s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 1375s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.4.0-1ubuntu1 [29.6 kB] 1375s Get:226 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 1375s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 1375s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 1375s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 1375s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 1375s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.6-1ubuntu1 [9806 B] 1375s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 1375s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 1375s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 1375s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 1375s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 1375s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 1375s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 1375s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 1375s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 1375s Get:241 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 1375s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 1375s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 1375s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 1376s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 1376s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 1376s Get:247 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu1 [4691 kB] 1376s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ase all 3.23.0-1 [1754 kB] 1376s Get:249 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB] 1376s Get:250 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.12.3-3 [109 kB] 1376s Get:251 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.7.3-2ubuntu2 [41.2 kB] 1376s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1 [214 kB] 1376s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 1376s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.6.1-1ubuntu1 [163 kB] 1376s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 1376s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 1376s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dotenv all 1.0.1-1 [22.3 kB] 1376s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 1376s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 1376s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 1376s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.23.4-2build1 [1811 kB] 1376s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.9.1-1 [290 kB] 1376s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.0-1 [91.6 kB] 1376s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2024.7.29-1 [38.0 kB] 1376s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 1376s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 1376s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-settings all 2.6.1-1 [40.8 kB] 1376s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 1376s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 1377s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 1377s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 1377s Get:272 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 1377s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 1377s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 1377s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 1377s Get:276 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 1377s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 1377s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [138 kB] 1377s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 1377s Get:280 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 1377s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB] 1377s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymatgen amd64 2024.6.10+dfsg1-8 [2506 kB] 1377s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu1 [609 kB] 1377s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-emmet-core all 0.76.2-1 [123 kB] 1377s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-frozendict all 1.2-3 [4906 B] 1377s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 1377s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 1377s Get:288 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 1377s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 1377s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1 [645 kB] 1377s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-phonopy amd64 2.23.1-1 [263 kB] 1377s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 1377s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 1377s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 1377s Get:295 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 1377s Get:296 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 1377s Get:297 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 1377s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 1377s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 1377s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 1377s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpi4py amd64 3.1.6-9ubuntu1 [467 kB] 1377s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-1build1 [7834 kB] 1378s Fetched 532 MB in 30s (17.7 MB/s) 1378s Selecting previously unselected package fonts-lato. 1378s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75576 files and directories currently installed.) 1378s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 1378s Unpacking fonts-lato (2.015-1) ... 1379s Selecting previously unselected package sgml-base. 1379s Preparing to unpack .../001-sgml-base_1.31_all.deb ... 1379s Unpacking sgml-base (1.31) ... 1379s Selecting previously unselected package m4. 1379s Preparing to unpack .../002-m4_1.4.19-4build1_amd64.deb ... 1379s Unpacking m4 (1.4.19-4build1) ... 1379s Selecting previously unselected package autoconf. 1379s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 1379s Unpacking autoconf (2.72-3) ... 1379s Selecting previously unselected package autotools-dev. 1379s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 1379s Unpacking autotools-dev (20220109.1) ... 1379s Selecting previously unselected package automake. 1379s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 1379s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 1379s Selecting previously unselected package autopoint. 1379s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 1379s Unpacking autopoint (0.22.5-2) ... 1379s Selecting previously unselected package libtcl8.6:amd64. 1379s Preparing to unpack .../007-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 1379s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 1379s Selecting previously unselected package fonts-dejavu-mono. 1379s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 1379s Unpacking fonts-dejavu-mono (2.37-8) ... 1379s Selecting previously unselected package fonts-dejavu-core. 1379s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 1379s Unpacking fonts-dejavu-core (2.37-8) ... 1379s Selecting previously unselected package fontconfig-config. 1379s Preparing to unpack .../010-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 1379s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 1379s Selecting previously unselected package libfontconfig1:amd64. 1379s Preparing to unpack .../011-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 1379s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 1379s Selecting previously unselected package libxrender1:amd64. 1379s Preparing to unpack .../012-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 1379s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 1379s Selecting previously unselected package libxft2:amd64. 1379s Preparing to unpack .../013-libxft2_2.3.6-1build1_amd64.deb ... 1379s Unpacking libxft2:amd64 (2.3.6-1build1) ... 1379s Selecting previously unselected package x11-common. 1379s Preparing to unpack .../014-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1379s Unpacking x11-common (1:7.7+23ubuntu3) ... 1379s Selecting previously unselected package libxss1:amd64. 1379s Preparing to unpack .../015-libxss1_1%3a1.2.3-1build3_amd64.deb ... 1379s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 1379s Selecting previously unselected package libtk8.6:amd64. 1379s Preparing to unpack .../016-libtk8.6_8.6.15-1_amd64.deb ... 1379s Unpacking libtk8.6:amd64 (8.6.15-1) ... 1379s Selecting previously unselected package tk8.6-blt2.5. 1379s Preparing to unpack .../017-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 1379s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 1379s Selecting previously unselected package blt. 1379s Preparing to unpack .../018-blt_2.5.3+dfsg-7build1_amd64.deb ... 1379s Unpacking blt (2.5.3+dfsg-7build1) ... 1379s Selecting previously unselected package libisl23:amd64. 1379s Preparing to unpack .../019-libisl23_0.27-1_amd64.deb ... 1379s Unpacking libisl23:amd64 (0.27-1) ... 1379s Selecting previously unselected package libmpc3:amd64. 1379s Preparing to unpack .../020-libmpc3_1.3.1-1build2_amd64.deb ... 1379s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 1379s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 1380s Preparing to unpack .../021-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package cpp-14. 1380s Preparing to unpack .../022-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package cpp-x86-64-linux-gnu. 1380s Preparing to unpack .../023-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 1380s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1380s Selecting previously unselected package cpp. 1380s Preparing to unpack .../024-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 1380s Unpacking cpp (4:14.1.0-2ubuntu1) ... 1380s Selecting previously unselected package libcc1-0:amd64. 1380s Preparing to unpack .../025-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libgomp1:amd64. 1380s Preparing to unpack .../026-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libitm1:amd64. 1380s Preparing to unpack .../027-libitm1_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libasan8:amd64. 1380s Preparing to unpack .../028-libasan8_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package liblsan0:amd64. 1380s Preparing to unpack .../029-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libtsan2:amd64. 1380s Preparing to unpack .../030-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libubsan1:amd64. 1380s Preparing to unpack .../031-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libhwasan0:amd64. 1380s Preparing to unpack .../032-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libquadmath0:amd64. 1380s Preparing to unpack .../033-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package libgcc-14-dev:amd64. 1380s Preparing to unpack .../034-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 1380s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 1380s Preparing to unpack .../035-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 1380s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1381s Selecting previously unselected package gcc-14. 1381s Preparing to unpack .../036-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 1381s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 1381s Selecting previously unselected package gcc-x86-64-linux-gnu. 1381s Preparing to unpack .../037-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 1381s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1381s Selecting previously unselected package gcc. 1381s Preparing to unpack .../038-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 1381s Unpacking gcc (4:14.1.0-2ubuntu1) ... 1381s Selecting previously unselected package libstdc++-14-dev:amd64. 1381s Preparing to unpack .../039-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 1381s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 1381s Selecting previously unselected package g++-14-x86-64-linux-gnu. 1381s Preparing to unpack .../040-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 1381s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1381s Selecting previously unselected package g++-14. 1381s Preparing to unpack .../041-g++-14_14.2.0-8ubuntu1_amd64.deb ... 1381s Unpacking g++-14 (14.2.0-8ubuntu1) ... 1381s Selecting previously unselected package g++-x86-64-linux-gnu. 1381s Preparing to unpack .../042-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 1381s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1381s Selecting previously unselected package g++. 1381s Preparing to unpack .../043-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 1381s Unpacking g++ (4:14.1.0-2ubuntu1) ... 1381s Selecting previously unselected package build-essential. 1381s Preparing to unpack .../044-build-essential_12.10ubuntu1_amd64.deb ... 1381s Unpacking build-essential (12.10ubuntu1) ... 1381s Selecting previously unselected package cython3. 1381s Preparing to unpack .../045-cython3_3.0.11+dfsg-1ubuntu2_amd64.deb ... 1381s Unpacking cython3 (3.0.11+dfsg-1ubuntu2) ... 1381s Selecting previously unselected package libdebhelper-perl. 1381s Preparing to unpack .../046-libdebhelper-perl_13.20ubuntu1_all.deb ... 1381s Unpacking libdebhelper-perl (13.20ubuntu1) ... 1381s Selecting previously unselected package libtool. 1381s Preparing to unpack .../047-libtool_2.4.7-7build1_all.deb ... 1381s Unpacking libtool (2.4.7-7build1) ... 1381s Selecting previously unselected package dh-autoreconf. 1381s Preparing to unpack .../048-dh-autoreconf_20_all.deb ... 1381s Unpacking dh-autoreconf (20) ... 1381s Selecting previously unselected package libarchive-zip-perl. 1381s Preparing to unpack .../049-libarchive-zip-perl_1.68-1_all.deb ... 1381s Unpacking libarchive-zip-perl (1.68-1) ... 1381s Selecting previously unselected package libfile-stripnondeterminism-perl. 1381s Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 1381s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 1381s Selecting previously unselected package dh-strip-nondeterminism. 1381s Preparing to unpack .../051-dh-strip-nondeterminism_1.14.0-1_all.deb ... 1381s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 1381s Selecting previously unselected package debugedit. 1381s Preparing to unpack .../052-debugedit_1%3a5.1-1_amd64.deb ... 1381s Unpacking debugedit (1:5.1-1) ... 1381s Selecting previously unselected package dwz. 1381s Preparing to unpack .../053-dwz_0.15-1build6_amd64.deb ... 1381s Unpacking dwz (0.15-1build6) ... 1381s Selecting previously unselected package gettext. 1381s Preparing to unpack .../054-gettext_0.22.5-2_amd64.deb ... 1381s Unpacking gettext (0.22.5-2) ... 1381s Selecting previously unselected package intltool-debian. 1381s Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ... 1381s Unpacking intltool-debian (0.35.0+20060710.6) ... 1381s Selecting previously unselected package po-debconf. 1381s Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... 1381s Unpacking po-debconf (1.0.21+nmu1) ... 1381s Selecting previously unselected package debhelper. 1381s Preparing to unpack .../057-debhelper_13.20ubuntu1_all.deb ... 1381s Unpacking debhelper (13.20ubuntu1) ... 1382s Selecting previously unselected package dh-python. 1382s Preparing to unpack .../058-dh-python_6.20241024_all.deb ... 1382s Unpacking dh-python (6.20241024) ... 1382s Selecting previously unselected package xml-core. 1382s Preparing to unpack .../059-xml-core_0.19_all.deb ... 1382s Unpacking xml-core (0.19) ... 1382s Selecting previously unselected package docutils-common. 1382s Preparing to unpack .../060-docutils-common_0.21.2+dfsg-2_all.deb ... 1382s Unpacking docutils-common (0.21.2+dfsg-2) ... 1382s Selecting previously unselected package fontconfig. 1382s Preparing to unpack .../061-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 1382s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 1382s Selecting previously unselected package fonts-font-awesome. 1382s Preparing to unpack .../062-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1382s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1382s Selecting previously unselected package fonts-glyphicons-halflings. 1382s Preparing to unpack .../063-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1382s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1382s Selecting previously unselected package fonts-lyx. 1382s Preparing to unpack .../064-fonts-lyx_2.4.2.1-1_all.deb ... 1382s Unpacking fonts-lyx (2.4.2.1-1) ... 1382s Selecting previously unselected package fonts-mathjax. 1382s Preparing to unpack .../065-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1382s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1382s Selecting previously unselected package libaec0:amd64. 1382s Preparing to unpack .../066-libaec0_1.1.3-1_amd64.deb ... 1382s Unpacking libaec0:amd64 (1.1.3-1) ... 1382s Selecting previously unselected package libllvm17t64:amd64. 1382s Preparing to unpack .../067-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 1382s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 1382s Selecting previously unselected package libamd-comgr2:amd64. 1382s Preparing to unpack .../068-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 1382s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1383s Selecting previously unselected package libdrm-amdgpu1:amd64. 1383s Preparing to unpack .../069-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 1383s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 1383s Selecting previously unselected package libhsakmt1:amd64. 1383s Preparing to unpack .../070-libhsakmt1_5.7.0-1build1_amd64.deb ... 1383s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 1383s Selecting previously unselected package libhsa-runtime64-1. 1383s Preparing to unpack .../071-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 1383s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 1383s Selecting previously unselected package libamdhip64-5. 1383s Preparing to unpack .../072-libamdhip64-5_5.7.1-5_amd64.deb ... 1383s Unpacking libamdhip64-5 (5.7.1-5) ... 1383s Selecting previously unselected package libblas3:amd64. 1383s Preparing to unpack .../073-libblas3_3.12.0-3build2_amd64.deb ... 1383s Unpacking libblas3:amd64 (3.12.0-3build2) ... 1383s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 1383s Preparing to unpack .../074-libboost-iostreams1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 1383s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 1383s Selecting previously unselected package libpixman-1-0:amd64. 1383s Preparing to unpack .../075-libpixman-1-0_0.44.0-3_amd64.deb ... 1383s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 1383s Selecting previously unselected package libxcb-render0:amd64. 1383s Preparing to unpack .../076-libxcb-render0_1.17.0-2_amd64.deb ... 1383s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 1383s Selecting previously unselected package libxcb-shm0:amd64. 1383s Preparing to unpack .../077-libxcb-shm0_1.17.0-2_amd64.deb ... 1383s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 1383s Selecting previously unselected package libcairo2:amd64. 1383s Preparing to unpack .../078-libcairo2_1.18.2-2_amd64.deb ... 1383s Unpacking libcairo2:amd64 (1.18.2-2) ... 1383s Selecting previously unselected package libdeflate0:amd64. 1383s Preparing to unpack .../079-libdeflate0_1.22-1_amd64.deb ... 1383s Unpacking libdeflate0:amd64 (1.22-1) ... 1383s Selecting previously unselected package libdouble-conversion3:amd64. 1383s Preparing to unpack .../080-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 1383s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 1383s Selecting previously unselected package libpciaccess0:amd64. 1383s Preparing to unpack .../081-libpciaccess0_0.17-3build1_amd64.deb ... 1383s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 1383s Selecting previously unselected package libdrm-intel1:amd64. 1383s Preparing to unpack .../082-libdrm-intel1_2.4.123-1_amd64.deb ... 1383s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 1383s Selecting previously unselected package libdrm-radeon1:amd64. 1383s Preparing to unpack .../083-libdrm-radeon1_2.4.123-1_amd64.deb ... 1383s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 1383s Selecting previously unselected package libwayland-server0:amd64. 1383s Preparing to unpack .../084-libwayland-server0_1.23.0-1_amd64.deb ... 1383s Unpacking libwayland-server0:amd64 (1.23.0-1) ... 1383s Selecting previously unselected package libxcb-randr0:amd64. 1383s Preparing to unpack .../085-libxcb-randr0_1.17.0-2_amd64.deb ... 1383s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 1383s Selecting previously unselected package libglapi-mesa:amd64. 1383s Preparing to unpack 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package libpsm2-2. 1384s Preparing to unpack .../101-libpsm2-2_11.2.185-2.1_amd64.deb ... 1384s Unpacking libpsm2-2 (11.2.185-2.1) ... 1384s Selecting previously unselected package librdmacm1t64:amd64. 1384s Preparing to unpack .../102-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 1384s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 1384s Selecting previously unselected package libfabric1:amd64. 1384s Preparing to unpack .../103-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 1384s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 1384s Selecting previously unselected package libgfortran5:amd64. 1384s Preparing to unpack .../104-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 1384s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 1384s Selecting previously unselected package libvulkan1:amd64. 1384s Preparing to unpack .../105-libvulkan1_1.3.296.0-1_amd64.deb ... 1384s Unpacking libvulkan1:amd64 (1.3.296.0-1) ... 1384s Selecting previously unselected package libgl1-mesa-dri:amd64. 1384s Preparing to unpack .../106-libgl1-mesa-dri_24.2.3-1ubuntu1_amd64.deb ... 1384s Unpacking libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 1384s Selecting previously unselected package libglvnd0:amd64. 1384s Preparing to unpack .../107-libglvnd0_1.7.0-1build1_amd64.deb ... 1384s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 1384s Selecting previously unselected package libxcb-glx0:amd64. 1384s Preparing to unpack .../108-libxcb-glx0_1.17.0-2_amd64.deb ... 1384s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 1384s Selecting previously unselected package libxfixes3:amd64. 1384s Preparing to unpack .../109-libxfixes3_1%3a6.0.0-2build1_amd64.deb ... 1384s Unpacking libxfixes3:amd64 (1:6.0.0-2build1) ... 1384s Selecting previously unselected package libxxf86vm1:amd64. 1384s Preparing to unpack .../110-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 1384s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 1384s Selecting previously unselected package libglx-mesa0:amd64. 1384s Preparing to unpack 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unselected package libinput-bin. 1384s Preparing to unpack .../127-libinput-bin_1.26.2-1_amd64.deb ... 1384s Unpacking libinput-bin (1.26.2-1) ... 1385s Selecting previously unselected package libmtdev1t64:amd64. 1385s Preparing to unpack .../128-libmtdev1t64_1.1.6-1.2_amd64.deb ... 1385s Unpacking libmtdev1t64:amd64 (1.1.6-1.2) ... 1385s Selecting previously unselected package libinput10:amd64. 1385s Preparing to unpack .../129-libinput10_1.26.2-1_amd64.deb ... 1385s Unpacking libinput10:amd64 (1.26.2-1) ... 1385s Selecting previously unselected package libjpeg-turbo8:amd64. 1385s Preparing to unpack .../130-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 1385s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 1385s Selecting previously unselected package libjpeg8:amd64. 1385s Preparing to unpack .../131-libjpeg8_8c-2ubuntu11_amd64.deb ... 1385s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 1385s Selecting previously unselected package libjs-bootstrap. 1385s Preparing to unpack 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libpmix2t64:amd64. 1385s Preparing to unpack .../153-libpmix2t64_5.0.3-2_amd64.deb ... 1385s Unpacking libpmix2t64:amd64 (5.0.3-2) ... 1385s Selecting previously unselected package libibumad3:amd64. 1385s Preparing to unpack .../154-libibumad3_52.0-2ubuntu1_amd64.deb ... 1385s Unpacking libibumad3:amd64 (52.0-2ubuntu1) ... 1385s Selecting previously unselected package libibmad5:amd64. 1385s Preparing to unpack .../155-libibmad5_52.0-2ubuntu1_amd64.deb ... 1385s Unpacking libibmad5:amd64 (52.0-2ubuntu1) ... 1385s Selecting previously unselected package libucx0:amd64. 1385s Preparing to unpack .../156-libucx0_1.17.0+ds-3build1_amd64.deb ... 1385s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 1385s Selecting previously unselected package libopenmpi3t64:amd64. 1385s Preparing to unpack .../157-libopenmpi3t64_4.1.6-13.3ubuntu2_amd64.deb ... 1385s Unpacking libopenmpi3t64:amd64 (4.1.6-13.3ubuntu2) ... 1386s Selecting previously unselected package libpcre2-16-0:amd64. 1386s Preparing to unpack .../158-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 1386s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 1386s Selecting previously unselected package proj-data. 1386s Preparing to unpack .../159-proj-data_9.5.0-1_all.deb ... 1386s Unpacking proj-data (9.5.0-1) ... 1386s Selecting previously unselected package libjbig0:amd64. 1386s Preparing to unpack .../160-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 1386s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 1386s Selecting previously unselected package libsharpyuv0:amd64. 1386s Preparing to unpack .../161-libsharpyuv0_1.4.0-0.1_amd64.deb ... 1386s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 1386s Selecting previously unselected package libwebp7:amd64. 1386s Preparing to unpack .../162-libwebp7_1.4.0-0.1_amd64.deb ... 1386s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 1386s Selecting previously unselected package libtiff6:amd64. 1386s Preparing to unpack .../163-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 1386s Unpacking libtiff6:amd64 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1386s Unpacking libpython3-all-dev:amd64 (3.12.6-0ubuntu1) ... 1386s Selecting previously unselected package libqhull-r8.0:amd64. 1386s Preparing to unpack .../169-libqhull-r8.0_2020.2-6build1_amd64.deb ... 1386s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 1386s Selecting previously unselected package libqt5core5t64:amd64. 1386s Preparing to unpack .../170-libqt5core5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 1386s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 1386s Selecting previously unselected package libqt5dbus5t64:amd64. 1386s Preparing to unpack .../171-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 1386s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 1386s Selecting previously unselected package libegl1:amd64. 1386s Preparing to unpack .../172-libegl1_1.7.0-1build1_amd64.deb ... 1386s Unpacking libegl1:amd64 (1.7.0-1build1) ... 1386s Selecting previously unselected package libqt5network5t64:amd64. 1386s Preparing to unpack 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1387s Preparing to unpack .../188-libsymspg2_2.4.0-1ubuntu1_amd64.deb ... 1387s Unpacking libsymspg2:amd64 (2.4.0-1ubuntu1) ... 1387s Selecting previously unselected package libtbbmalloc2:amd64. 1387s Preparing to unpack .../189-libtbbmalloc2_2021.12.0-1ubuntu2_amd64.deb ... 1387s Unpacking libtbbmalloc2:amd64 (2021.12.0-1ubuntu2) ... 1387s Selecting previously unselected package libtbbbind-2-5:amd64. 1387s Preparing to unpack .../190-libtbbbind-2-5_2021.12.0-1ubuntu2_amd64.deb ... 1387s Unpacking libtbbbind-2-5:amd64 (2021.12.0-1ubuntu2) ... 1387s Selecting previously unselected package libtbb12:amd64. 1387s Preparing to unpack .../191-libtbb12_2021.12.0-1ubuntu2_amd64.deb ... 1387s Unpacking libtbb12:amd64 (2021.12.0-1ubuntu2) ... 1387s Selecting previously unselected package libtheora0:amd64. 1387s Preparing to unpack .../192-libtheora0_1.1.1+dfsg.1-17_amd64.deb ... 1387s Unpacking libtheora0:amd64 (1.1.1+dfsg.1-17) ... 1387s Selecting previously unselected package libopengl0:amd64. 1387s Preparing to unpack .../193-libopengl0_1.7.0-1build1_amd64.deb ... 1387s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 1387s Selecting previously unselected package libvtk9.3:amd64. 1387s Preparing to unpack .../194-libvtk9.3_9.3.0+dfsg1-1build1_amd64.deb ... 1387s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-1build1) ... 1387s Selecting previously unselected package libvtk9.3-qt:amd64. 1387s Preparing to unpack .../195-libvtk9.3-qt_9.3.0+dfsg1-1build1_amd64.deb ... 1387s Unpacking libvtk9.3-qt:amd64 (9.3.0+dfsg1-1build1) ... 1387s Selecting previously unselected package libwebpdemux2:amd64. 1387s Preparing to unpack .../196-libwebpdemux2_1.4.0-0.1_amd64.deb ... 1387s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 1387s Selecting previously unselected package libwebpmux3:amd64. 1387s Preparing to unpack .../197-libwebpmux3_1.4.0-0.1_amd64.deb ... 1387s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 1387s Selecting previously unselected package libxslt1.1:amd64. 1387s Preparing to unpack .../198-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 1387s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 1387s Selecting previously unselected package openmpi-common. 1388s Preparing to unpack .../199-openmpi-common_4.1.6-13.3ubuntu2_all.deb ... 1388s Unpacking openmpi-common (4.1.6-13.3ubuntu2) ... 1388s Selecting previously unselected package openmpi-bin. 1388s Preparing to unpack .../200-openmpi-bin_4.1.6-13.3ubuntu2_amd64.deb ... 1388s Unpacking openmpi-bin (4.1.6-13.3ubuntu2) ... 1388s Selecting previously unselected package packmol. 1388s Preparing to unpack .../201-packmol_1%3a20.14.3-1_amd64.deb ... 1388s Unpacking packmol (1:20.14.3-1) ... 1388s Selecting previously unselected package python3-packaging. 1388s Preparing to unpack .../202-python3-packaging_24.1-1_all.deb ... 1388s Unpacking python3-packaging (24.1-1) ... 1388s Selecting previously unselected package python3-pyproject-hooks. 1388s Preparing to unpack .../203-python3-pyproject-hooks_1.2.0-1_all.deb ... 1388s Unpacking python3-pyproject-hooks (1.2.0-1) ... 1388s Selecting previously unselected package python3-toml. 1388s Preparing to unpack .../204-python3-toml_0.10.2-1_all.deb ... 1388s Unpacking python3-toml (0.10.2-1) ... 1388s Selecting previously unselected package python3-wheel. 1388s Preparing to unpack .../205-python3-wheel_0.44.0-1_all.deb ... 1388s Unpacking python3-wheel (0.44.0-1) ... 1388s Selecting previously unselected package python3-build. 1388s Preparing to unpack .../206-python3-build_1.2.2-1_all.deb ... 1388s Unpacking python3-build (1.2.2-1) ... 1388s Selecting previously unselected package python3-installer. 1388s Preparing to unpack .../207-python3-installer_0.7.0+dfsg1-3_all.deb ... 1388s Unpacking python3-installer (0.7.0+dfsg1-3) ... 1388s Selecting previously unselected package pybuild-plugin-pyproject. 1388s Preparing to unpack .../208-pybuild-plugin-pyproject_6.20241024_all.deb ... 1388s Unpacking pybuild-plugin-pyproject (6.20241024) ... 1388s Selecting previously unselected package pymatgen-test-files. 1388s Preparing to unpack .../209-pymatgen-test-files_2024.10.29-1_all.deb ... 1388s Unpacking pymatgen-test-files (2024.10.29-1) ... 1390s Selecting previously unselected package python-matplotlib-data. 1390s Preparing to unpack .../210-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ... 1390s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ... 1390s Selecting previously unselected package libjs-mathjax. 1390s Preparing to unpack .../211-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1390s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1390s Selecting previously unselected package sphinx-rtd-theme-common. 1390s Preparing to unpack .../212-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 1390s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 1390s Selecting previously unselected package python-pymatgen-doc. 1390s Preparing to unpack .../213-python-pymatgen-doc_2024.6.10+dfsg1-8_all.deb ... 1390s Unpacking python-pymatgen-doc (2024.6.10+dfsg1-8) ... 1390s Selecting previously unselected package python3-all. 1390s Preparing to unpack .../214-python3-all_3.12.6-0ubuntu1_amd64.deb ... 1390s Unpacking python3-all (3.12.6-0ubuntu1) ... 1391s Selecting previously unselected package python3.12-dev. 1391s Preparing to unpack .../215-python3.12-dev_3.12.7-3_amd64.deb ... 1391s Unpacking python3.12-dev (3.12.7-3) ... 1391s Selecting previously unselected package python3-dev. 1391s Preparing to unpack .../216-python3-dev_3.12.6-0ubuntu1_amd64.deb ... 1391s Unpacking python3-dev (3.12.6-0ubuntu1) ... 1391s Selecting previously unselected package python3-all-dev. 1391s Preparing to unpack .../217-python3-all-dev_3.12.6-0ubuntu1_amd64.deb ... 1391s Unpacking python3-all-dev (3.12.6-0ubuntu1) ... 1391s Selecting previously unselected package python3-annotated-types. 1391s Preparing to unpack .../218-python3-annotated-types_0.7.0-1_all.deb ... 1391s Unpacking python3-annotated-types (0.7.0-1) ... 1391s Selecting previously unselected package python3-appdirs. 1391s Preparing to unpack .../219-python3-appdirs_1.4.4-4_all.deb ... 1391s Unpacking python3-appdirs (1.4.4-4) ... 1391s Selecting previously unselected package python3-numpy. 1391s Preparing to unpack .../220-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 1391s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 1391s Selecting previously unselected package python3-decorator. 1391s Preparing to unpack .../221-python3-decorator_5.1.1-5_all.deb ... 1391s Unpacking python3-decorator (5.1.1-5) ... 1391s Selecting previously unselected package python3-scipy. 1391s Preparing to unpack .../222-python3-scipy_1.13.1-5_amd64.deb ... 1391s Unpacking python3-scipy (1.13.1-5) ... 1391s Selecting previously unselected package python3-spglib. 1391s Preparing to unpack .../223-python3-spglib_2.4.0-1ubuntu1_amd64.deb ... 1391s Unpacking python3-spglib (2.4.0-1ubuntu1) ... 1391s Selecting previously unselected package python3-six. 1391s Preparing to unpack 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python3-tk:amd64 (3.12.6-1ubuntu1) ... 1391s Selecting previously unselected package python3-pil.imagetk:amd64. 1391s Preparing to unpack .../230-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 1391s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 1391s Selecting previously unselected package python3-contourpy. 1391s Preparing to unpack .../231-python3-contourpy_1.3.0-2_amd64.deb ... 1391s Unpacking python3-contourpy (1.3.0-2) ... 1391s Selecting previously unselected package python3-cycler. 1391s Preparing to unpack .../232-python3-cycler_0.12.1-1_all.deb ... 1391s Unpacking python3-cycler (0.12.1-1) ... 1392s Selecting previously unselected package python3-brotli. 1392s Preparing to unpack .../233-python3-brotli_1.1.0-2build2_amd64.deb ... 1392s Unpacking python3-brotli (1.1.0-2build2) ... 1392s Selecting previously unselected package python3-ufolib2. 1392s Preparing to unpack .../234-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 1392s Unpacking python3-ufolib2 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.../245-python3-matplotlib_3.8.3-3ubuntu1_amd64.deb ... 1392s Unpacking python3-matplotlib (3.8.3-3ubuntu1) ... 1392s Selecting previously unselected package python3-ase. 1392s Preparing to unpack .../246-python3-ase_3.23.0-1_all.deb ... 1392s Unpacking python3-ase (3.23.0-1) ... 1393s Selecting previously unselected package python3-soupsieve. 1393s Preparing to unpack .../247-python3-soupsieve_2.6-1_all.deb ... 1393s Unpacking python3-soupsieve (2.6-1) ... 1393s Selecting previously unselected package python3-bs4. 1393s Preparing to unpack .../248-python3-bs4_4.12.3-3_all.deb ... 1393s Unpacking python3-bs4 (4.12.3-3) ... 1393s Selecting previously unselected package python3-bson. 1393s Preparing to unpack .../249-python3-bson_4.7.3-2ubuntu2_all.deb ... 1393s Unpacking python3-bson (4.7.3-2ubuntu2) ... 1393s Selecting previously unselected package python3-cftime. 1393s Preparing to unpack .../250-python3-cftime_1.6.4-1_amd64.deb ... 1393s Unpacking python3-cftime (1.6.4-1) ... 1393s Selecting previously unselected package python3-defusedxml. 1393s Preparing to unpack .../251-python3-defusedxml_0.7.1-2_all.deb ... 1393s Unpacking python3-defusedxml (0.7.1-2) ... 1393s Selecting previously unselected package python3-dnspython. 1393s Preparing to unpack .../252-python3-dnspython_2.6.1-1ubuntu1_all.deb ... 1393s Unpacking python3-dnspython (2.6.1-1ubuntu1) ... 1393s Selecting previously unselected package python3-roman. 1393s Preparing to unpack .../253-python3-roman_4.2-1_all.deb ... 1393s Unpacking python3-roman (4.2-1) ... 1393s Selecting previously unselected package python3-docutils. 1393s Preparing to unpack .../254-python3-docutils_0.21.2+dfsg-2_all.deb ... 1393s Unpacking python3-docutils (0.21.2+dfsg-2) ... 1393s Selecting previously unselected package python3-dotenv. 1393s Preparing to unpack .../255-python3-dotenv_1.0.1-1_all.deb ... 1393s Unpacking python3-dotenv (1.0.1-1) ... 1393s Selecting previously unselected package python3-email-validator. 1393s 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python3-joblib (1.3.2-5) ... 1394s Selecting previously unselected package python3-networkx. 1394s Preparing to unpack .../267-python3-networkx_3.2.1-4ubuntu1_all.deb ... 1394s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 1394s Selecting previously unselected package python3-palettable. 1394s Preparing to unpack .../268-python3-palettable_3.3.3-1_all.deb ... 1394s Unpacking python3-palettable (3.3.3-1) ... 1394s Selecting previously unselected package python3-fastjsonschema. 1394s Preparing to unpack .../269-python3-fastjsonschema_2.20.0-1_all.deb ... 1394s Unpacking python3-fastjsonschema (2.20.0-1) ... 1394s Selecting previously unselected package python3-platformdirs. 1394s Preparing to unpack .../270-python3-platformdirs_4.3.6-1_all.deb ... 1394s Unpacking python3-platformdirs (4.3.6-1) ... 1394s Selecting previously unselected package python3-traitlets. 1394s Preparing to unpack .../271-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 1394s Unpacking python3-traitlets 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previously unselected package python3-iniconfig. 1396s Preparing to unpack .../287-python3-iniconfig_1.1.1-2_all.deb ... 1396s Unpacking python3-iniconfig (1.1.1-2) ... 1396s Selecting previously unselected package python3-netcdf4. 1396s Preparing to unpack .../288-python3-netcdf4_1.7.2-1_amd64.deb ... 1396s Unpacking python3-netcdf4 (1.7.2-1) ... 1396s Selecting previously unselected package python3-phonopy. 1396s Preparing to unpack .../289-python3-phonopy_2.23.1-1_amd64.deb ... 1396s Unpacking python3-phonopy (2.23.1-1) ... 1396s Selecting previously unselected package python3-pluggy. 1396s Preparing to unpack .../290-python3-pluggy_1.5.0-1_all.deb ... 1396s Unpacking python3-pluggy (1.5.0-1) ... 1397s Selecting previously unselected package python3-pytest. 1397s Preparing to unpack .../291-python3-pytest_8.3.3-1_all.deb ... 1397s Unpacking python3-pytest (8.3.3-1) ... 1397s Selecting previously unselected package python3-snowballstemmer. 1397s Preparing to unpack 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libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 1409s Setting up gettext (0.22.5-2) ... 1409s Setting up libgbm1:amd64 (24.2.3-1ubuntu1) ... 1409s Setting up libwacom9:amd64 (2.13.0-1) ... 1409s Setting up pybuild-plugin-pyproject (6.20241024) ... 1409s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 1410s Setting up python3-pytest (8.3.3-1) ... 1410s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 1410s Setting up libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 1410s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 1410s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 1410s Setting up python3-nbformat (5.9.1-1) ... 1410s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 1410s Setting up python3-bs4 (4.12.3-3) ... 1410s Setting up libinput-bin (1.26.2-1) ... 1410s Setting up libtbbbind-2-5:amd64 (2021.12.0-1ubuntu2) ... 1410s Setting up intltool-debian (0.35.0+20060710.6) ... 1410s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 1410s Setting up python3-fs (2.4.16-4) ... 1410s Setting up libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 1410s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1410s Setting up packmol (1:20.14.3-1) ... 1410s Setting up python3-pydantic (2.9.1-1) ... 1410s Setting up libraqm0:amd64 (0.10.1-1build1) ... 1410s Setting up python3.12-dev (3.12.7-3) ... 1410s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1410s Setting up libpmix2t64:amd64 (5.0.3-2) ... 1410s Setting up python3-plotly (5.20.0+dfsg-1) ... 1416s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 1417s Setting up libjs-sphinxdoc (7.4.7-4) ... 1417s Setting up cpp-14 (14.2.0-8ubuntu1) ... 1417s Setting up dh-strip-nondeterminism (1.14.0-1) ... 1417s Setting up python3-lxml:amd64 (5.3.0-1) ... 1417s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 1417s Setting up xml-core (0.19) ... 1417s Setting up libegl1:amd64 (1.7.0-1build1) ... 1417s Setting up python3-contourpy (1.3.0-2) ... 1417s Setting up python3-pydantic-settings (2.6.1-1) ... 1417s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 1417s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 1417s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 1417s Setting up python3-spglib (2.4.0-1ubuntu1) ... 1418s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 1418s Setting up libsm6:amd64 (2:1.2.4-1) ... 1418s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 1418s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 1418s Setting up python3-uncertainties (3.2.2-1) ... 1418s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1418s Setting up libinput10:amd64 (1.26.2-1) ... 1418s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 1418s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 1420s Regenerating fonts cache... done. 1420s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 1420s Setting up libxft2:amd64 (2.3.6-1build1) ... 1420s Setting up libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 1420s Setting up python3-scipy (1.13.1-5) ... 1422s Setting up libpython3-dev:amd64 (3.12.6-0ubuntu1) ... 1422s Setting up libglx0:amd64 (1.7.0-1build1) ... 1422s Setting up libproj25:amd64 (9.5.0-1) ... 1422s Setting up po-debconf (1.0.21+nmu1) ... 1422s Setting up libtk8.6:amd64 (8.6.15-1) ... 1422s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 1422s Setting up python3.12-tk (3.12.7-3) ... 1422s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 1422s Setting up libtbb12:amd64 (2021.12.0-1ubuntu2) ... 1422s Setting up python-pymatgen-doc (2024.6.10+dfsg1-8) ... 1422s Setting up libcairo2:amd64 (1.18.2-2) ... 1422s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 1423s Setting up libgl1:amd64 (1.7.0-1build1) ... 1423s Setting up python3-pandas (2.2.3+dfsg-5) ... 1426s Setting up libpython3-all-dev:amd64 (3.12.6-0ubuntu1) ... 1426s Setting up sphinx-common (7.4.7-4) ... 1426s Setting up python3-dev (3.12.6-0ubuntu1) ... 1426s Setting up python3-h5py (3.11.0-5ubuntu1) ... 1426s Setting up python3-cftime (1.6.4-1) ... 1426s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 1426s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 1426s Setting up cpp (4:14.1.0-2ubuntu1) ... 1426s Setting up libtheora0:amd64 (1.1.1+dfsg.1-17) ... 1426s Setting up python3-monty (2024.7.29-1) ... 1427s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1427s Setting up python3-netcdf4 (1.7.2-1) ... 1427s Setting up python3-all-dev (3.12.6-0ubuntu1) ... 1427s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 1427s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1427s Setting up blt (2.5.3+dfsg-7build1) ... 1427s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu1) ... 1427s Setting up python3-tk:amd64 (3.12.6-1ubuntu1) ... 1427s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 1427s Setting up gcc-14 (14.2.0-8ubuntu1) ... 1427s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 1427s Setting up libamdhip64-5 (5.7.1-5) ... 1427s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 1427s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 1427s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 1427s Setting up g++-14 (14.2.0-8ubuntu1) ... 1427s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 1427s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu1) ... 1427s Setting up libtool (2.4.7-7build1) ... 1427s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 1427s Setting up gcc (4:14.1.0-2ubuntu1) ... 1427s Setting up dh-autoreconf (20) ... 1427s Setting up libopenmpi3t64:amd64 (4.1.6-13.3ubuntu2) ... 1427s Setting up g++ (4:14.1.0-2ubuntu1) ... 1427s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1427s Setting up build-essential (12.10ubuntu1) ... 1427s Setting up openmpi-bin (4.1.6-13.3ubuntu2) ... 1427s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1427s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1427s Setting up mpi-default-bin (1.17) ... 1427s Setting up debhelper (13.20ubuntu1) ... 1427s Setting up python3-mpi4py (3.1.6-9ubuntu1) ... 1427s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-1build1) ... 1427s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-1build1) ... 1427s Setting up python3-vtk9 (9.3.0+dfsg1-1build1) ... 1427s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 1427s patn = re.compile (" \S") 1427s Setting up python3-fonttools (4.46.0-1build2) ... 1428s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 1428s Setting up python3-matplotlib (3.8.3-3ubuntu1) ... 1429s Setting up python3-ase (3.23.0-1) ... 1431s Setting up python3-phonopy (2.23.1-1) ... 1431s Setting up python3-pymatgen (2024.6.10+dfsg1-8) ... 1432s /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:115: SyntaxWarning: invalid escape sequence '\+' 1432s pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") 1432s Setting up python3-emmet-core (0.76.2-1) ... 1432s Processing triggers for libc-bin (2.40-1ubuntu3) ... 1432s Processing triggers for man-db (2.13.0-1) ... 1434s Processing triggers for udev (256.5-2ubuntu4) ... 1434s Processing triggers for install-info (7.1.1-1) ... 1434s Processing triggers for sgml-base (1.31) ... 1434s Setting up docutils-common (0.21.2+dfsg-2) ... 1434s Processing triggers for sgml-base (1.31) ... 1434s Setting up python3-docutils (0.21.2+dfsg-2) ... 1435s Setting up python3-sphinx (7.4.7-4) ... 1435s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 1435s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 1435s Setting up autopkgtest-satdep (0) ... 1443s (Reading database ... 118631 files and directories currently installed.) 1443s Removing autopkgtest-satdep (0) ... 1448s autopkgtest [14:05:53]: test test-pymatgen-net: [----------------------- 1448s running network tests with NET_TEST_LIST=test_get_structure_by_id 1449s ============================= test session starts ============================== 1449s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3 1449s cachedir: .pytest_cache 1449s rootdir: /tmp/autopkgtest.petRaz/build.F6Z/src 1449s configfile: pyproject.toml 1449s plugins: typeguard-4.4.1 1467s collecting ... collected 2924 items / 2923 deselected / 2 skipped / 1 selected 1467s 1467s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED [100%] 1467s 1467s ============================= slowest 30 durations ============================= 1467s 0.16s call tests/ext/test_cod.py::TestCOD::test_get_structure_by_id 1467s 1467s (2 durations < 0.005s hidden. Use -vv to show these durations.) 1467s =========================== short test summary info ============================ 1467s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 1467s SKIPPED [1] tests/io/test_shengbte.py:11: could not import 'f90nml': No module named 'f90nml' 1467s ================ 1 passed, 2 skipped, 2923 deselected in 18.47s ================ 1468s autopkgtest [14:06:13]: test test-pymatgen-net: -----------------------] 1469s test-pymatgen-net PASS 1469s autopkgtest [14:06:14]: test test-pymatgen-net: - - - - - - - - - - results - - - - - - - - - - 1469s autopkgtest [14:06:14]: @@@@@@@@@@@@@@@@@@@@ summary 1469s test-pymatgen FAIL non-zero exit status 1 1469s test-pymatgen-net PASS 1474s virt: nova [W] Skipping flock for amd64 1474s virt: Creating nova instance adt-plucky-amd64-pymatgen-20241115-134145-juju-7f2275-prod-proposed-migration-environment-2-fb193414-f325-446e-b745-a21da5b9b77b from image adt/ubuntu-plucky-amd64-server-20241115.img (UUID 9bb4dd9c-454f-45da-a125-77b9d27ed145)... 1474s virt: nova [W] Skipping flock for amd64 1474s virt: Creating nova instance adt-plucky-amd64-pymatgen-20241115-134145-juju-7f2275-prod-proposed-migration-environment-2-fb193414-f325-446e-b745-a21da5b9b77b from image adt/ubuntu-plucky-amd64-server-20241115.img (UUID 9bb4dd9c-454f-45da-a125-77b9d27ed145)...