0s autopkgtest [10:15:34]: starting date and time: 2024-11-13 10:15:34+0000
  0s autopkgtest [10:15:34]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time
  0s autopkgtest [10:15:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._cqxfcbx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pykdtree --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-43.secgroup --name adt-plucky-amd64-pykdtree-20241113-101534-juju-7f2275-prod-proposed-migration-environment-2-829e83bd-4cd3-49c1-b9d8-9bfd102404f3 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
238s autopkgtest [10:19:32]: testbed dpkg architecture: amd64
238s autopkgtest [10:19:32]: testbed apt version: 2.9.8
238s autopkgtest [10:19:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup
238s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
239s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
239s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
239s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
239s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
239s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB]
239s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB]
239s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB]
239s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [639 kB]
239s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB]
239s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB]
239s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB]
239s Fetched 2175 kB in 0s (6022 kB/s)
239s Reading package lists...
241s Reading package lists...
241s Building dependency tree...
241s Reading state information...
242s Calculating upgrade...
242s The following NEW packages will be installed:
242s   python3.13-gdbm
242s The following packages will be upgraded:
242s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
242s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
242s Need to get 253 kB of archives.
242s After this operation, 147 kB of additional disk space will be used.
242s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB]
242s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB]
242s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB]
242s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB]
242s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B]
242s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB]
243s Fetched 253 kB in 0s (4522 kB/s)
243s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
243s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ...
243s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
243s Setting up python3-minimal (3.12.7-1) ...
243s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 60%
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
243s Preparing to unpack .../python3_3.12.7-1_amd64.deb ...
243s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
243s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ...
243s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
243s Selecting previously unselected package python3.13-gdbm.
243s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ...
243s Unpacking python3.13-gdbm (3.13.0-2) ...
243s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ...
243s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
243s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ...
243s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
243s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ...
243s Setting up python3.13-gdbm (3.13.0-2) ...
243s Setting up libpython3-stdlib:amd64 (3.12.7-1) ...
243s Setting up python3 (3.12.7-1) ...
244s Setting up python3-gdbm:amd64 (3.12.7-1) ...
244s Processing triggers for man-db (2.12.1-3) ...
244s Processing triggers for libc-bin (2.40-1ubuntu3) ...
245s Reading package lists...
245s Building dependency tree...
245s Reading state information...
246s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
246s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
246s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
246s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
246s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
247s Reading package lists...
247s Reading package lists...
247s Building dependency tree...
247s Reading state information...
248s Calculating upgrade...
248s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
248s Reading package lists...
248s Building dependency tree...
248s Reading state information...
249s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
250s autopkgtest [10:19:44]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024
250s autopkgtest [10:19:44]: @@@@@@@@@@@@@@@@@@@@ apt-source pykdtree
250s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (dsc) [2239 B]
250s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (tar) [20.5 kB]
250s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pykdtree 1.3.13+ds-1 (diff) [4548 B]
251s gpgv: Signature made Sat Sep  7 16:03:46 2024 UTC
251s gpgv:                using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812
251s gpgv:                issuer "antonio.valentino@tiscali.it"
251s gpgv: Can't check signature: No public key
251s dpkg-source: warning: cannot verify inline signature for ./pykdtree_1.3.13+ds-1.dsc: no acceptable signature found
251s autopkgtest [10:19:45]: testing package pykdtree version 1.3.13+ds-1
251s autopkgtest [10:19:45]: build not needed
251s autopkgtest [10:19:45]: test pybuild-autopkgtest: preparing testbed
252s Reading package lists...
252s Building dependency tree...
252s Reading state information...
252s Starting pkgProblemResolver with broken count: 0
252s Starting 2 pkgProblemResolver with broken count: 0
252s Done
253s The following additional packages will be installed:
253s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
253s   cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit
253s   dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
253s   g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
253s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian
253s   libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl
253s   libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5
253s   libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc
253s   libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev
253s   libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev
253s   libpython3.13-minimal libpython3.13-stdlib libquadmath0 libstdc++-14-dev
253s   libtool libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest
253s   pybuild-plugin-pyproject python3-all python3-all-dev python3-build
253s   python3-dev python3-iniconfig python3-installer python3-mako python3-numpy
253s   python3-packaging python3-pluggy python3-pykdtree python3-pyproject-hooks
253s   python3-pytest python3-toml python3-wheel python3.12-dev python3.13
253s   python3.13-dev python3.13-minimal zlib1g-dev
253s Suggested packages:
253s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
253s   cpp-14-doc cython-doc dh-make flit g++-multilib g++-14-multilib gcc-14-doc
253s   gcc-multilib manpages-dev flex bison gdb gcc-doc gcc-14-multilib
253s   gdb-x86-64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev
253s   libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
253s   libmail-box-perl python3-pip python3-venv python-build-doc
253s   python-installer-doc python-mako-doc python3-beaker gfortran
253s   python-numpy-doc python3.13-venv python3.13-doc binfmt-support
253s Recommended packages:
253s   libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl
253s The following NEW packages will be installed:
253s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
253s   cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper
253s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ g++-14
253s   g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
253s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian
253s   libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl
253s   libexpat1-dev libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5
253s   libgomp1 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc
253s   libjs-underscore liblapack3 liblsan0 libmpc3 libpython3-all-dev
253s   libpython3-dev libpython3.12-dev libpython3.13 libpython3.13-dev
253s   libpython3.13-minimal libpython3.13-stdlib libquadmath0 libstdc++-14-dev
253s   libtool libtsan2 libubsan1 m4 po-debconf pybuild-plugin-autopkgtest
253s   pybuild-plugin-pyproject python3-all python3-all-dev python3-build
253s   python3-dev python3-iniconfig python3-installer python3-mako python3-numpy
253s   python3-packaging python3-pluggy python3-pykdtree python3-pyproject-hooks
253s   python3-pytest python3-toml python3-wheel python3.12-dev python3.13
253s   python3.13-dev python3.13-minimal zlib1g-dev
253s 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded.
253s Need to get 104 MB/104 MB of archives.
253s After this operation, 376 MB of additional disk space will be used.
253s Get:1 /tmp/autopkgtest.YTNde7/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [836 B]
253s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB]
253s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB]
253s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB]
253s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB]
253s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB]
253s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
253s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB]
253s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
253s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
253s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB]
253s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B]
253s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B]
253s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB]
253s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB]
253s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB]
253s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB]
253s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB]
253s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB]
253s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB]
253s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB]
253s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB]
253s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB]
253s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB]
253s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB]
254s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB]
254s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B]
254s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B]
254s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB]
254s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB]
254s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB]
254s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B]
254s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B]
254s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
254s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu1 [2491 kB]
254s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
254s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB]
254s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB]
254s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
254s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
254s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
254s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB]
254s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB]
254s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB]
254s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
254s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
254s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB]
254s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB]
254s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB]
254s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.2-2 [140 kB]
254s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB]
254s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
254s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
254s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
254s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB]
254s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
254s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB]
254s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB]
254s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB]
254s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB]
254s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB]
254s Get:62 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B]
254s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
254s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB]
254s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
254s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB]
254s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB]
254s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB]
254s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
254s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B]
254s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB]
254s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B]
254s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB]
254s Get:74 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB]
254s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB]
254s Get:76 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B]
254s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
254s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-mako all 1.3.6-1 [63.5 kB]
254s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB]
254s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
254s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pykdtree amd64 1.3.13+ds-1 [69.2 kB]
254s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB]
254s Fetched 104 MB in 1s (113 MB/s)
254s Selecting previously unselected package libpython3.13-minimal:amd64.
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254s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ...
254s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ...
255s Selecting previously unselected package python3.13-minimal.
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259s Setting up dh-python (6.20241024) ...
259s Setting up python3-iniconfig (1.1.1-2) ...
260s Setting up libarchive-zip-perl (1.68-1) ...
260s Setting up libdebhelper-perl (13.20ubuntu1) ...
260s Setting up m4 (1.4.19-4build1) ...
260s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ...
260s Setting up python3-wheel (0.44.0-1) ...
260s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ...
260s Setting up autotools-dev (20220109.1) ...
260s Setting up libblas3:amd64 (3.12.0-3build2) ...
260s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
260s Setting up python3-packaging (24.1-1) ...
260s Setting up libexpat1-dev:amd64 (2.6.2-2) ...
260s Setting up python3-pyproject-hooks (1.2.0-1) ...
260s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ...
260s Setting up libmpc3:amd64 (1.3.1-1build2) ...
260s Setting up cython3 (3.0.11+dfsg-1ubuntu1) ...
262s Setting up autopoint (0.22.5-2) ...
262s Setting up python3-toml (0.10.2-1) ...
262s Setting up python3-installer (0.7.0+dfsg1-3) ...
262s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ...
262s Setting up autoconf (2.72-3) ...
262s Setting up python3-pluggy (1.5.0-1) ...
262s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ...
262s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
262s Setting up dwz (0.15-1build6) ...
262s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ...
262s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ...
262s Setting up debugedit (1:5.1-1) ...
262s Setting up python3.13-minimal (3.13.0-2) ...
263s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ...
263s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
263s Setting up libisl23:amd64 (0.27-1) ...
263s Setting up python3-build (1.2.2-1) ...
263s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ...
263s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ...
263s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ...
263s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ...
263s Setting up python3-mako (1.3.6-1) ...
264s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
264s Setting up libpython3.13:amd64 (3.13.0-2) ...
264s Setting up automake (1:1.16.5-1.3ubuntu1) ...
264s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
264s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
264s Setting up liblapack3:amd64 (3.12.0-3build2) ...
264s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
264s Setting up gettext (0.22.5-2) ...
264s Setting up python3.13 (3.13.0-2) ...
264s Setting up pybuild-plugin-pyproject (6.20241024) ...
264s Setting up python3-pytest (8.3.3-1) ...
265s Setting up python3-all (3.12.7-1) ...
265s Setting up libpython3.12-dev:amd64 (3.12.7-3) ...
265s Setting up intltool-debian (0.35.0+20060710.6) ...
265s Setting up libpython3.13-dev:amd64 (3.13.0-2) ...
265s Setting up python3.12-dev (3.12.7-3) ...
265s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
265s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
269s Setting up libjs-sphinxdoc (7.4.7-4) ...
269s Setting up cpp-14 (14.2.0-8ubuntu1) ...
269s Setting up dh-strip-nondeterminism (1.14.0-1) ...
269s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ...
269s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ...
269s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
269s Setting up python3-pykdtree (1.3.13+ds-1) ...
269s Setting up libpython3-dev:amd64 (3.12.7-1) ...
269s Setting up python3.13-dev (3.13.0-2) ...
269s Setting up po-debconf (1.0.21+nmu1) ...
269s Setting up libpython3-all-dev:amd64 (3.12.7-1) ...
269s Setting up python3-dev (3.12.7-1) ...
269s Setting up cpp (4:14.1.0-2ubuntu1) ...
269s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
269s Setting up python3-all-dev (3.12.7-1) ...
269s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
269s Setting up gcc-14 (14.2.0-8ubuntu1) ...
269s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ...
269s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
269s Setting up g++-14 (14.2.0-8ubuntu1) ...
269s Setting up libtool (2.4.7-7build1) ...
269s Setting up gcc (4:14.1.0-2ubuntu1) ...
269s Setting up dh-autoreconf (20) ...
269s Setting up g++ (4:14.1.0-2ubuntu1) ...
269s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
269s Setting up build-essential (12.10ubuntu1) ...
269s Setting up debhelper (13.20ubuntu1) ...
269s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
269s Setting up autopkgtest-satdep (0) ...
269s Processing triggers for systemd (256.5-2ubuntu4) ...
269s Processing triggers for man-db (2.12.1-3) ...
270s Processing triggers for install-info (7.1.1-1) ...
270s Processing triggers for libc-bin (2.40-1ubuntu3) ...
273s (Reading database ... 80987 files and directories currently installed.)
273s Removing autopkgtest-satdep (0) ...
273s autopkgtest [10:20:07]: test pybuild-autopkgtest: pybuild-autopkgtest
273s autopkgtest [10:20:07]: test pybuild-autopkgtest: [-----------------------
273s pybuild-autopkgtest
274s I: pybuild base:311: cd /tmp/autopkgtest.YTNde7/autopkgtest_tmp/build; python3.13 -m pytest --pyargs pykdtree
274s ============================= test session starts ==============================
274s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
274s rootdir: /tmp/autopkgtest.YTNde7/autopkgtest_tmp/build
274s configfile: pyproject.toml
274s plugins: typeguard-4.4.1
274s collected 0 items / 1 error
274s 
274s ==================================== ERRORS ====================================
274s ________________________ ERROR collecting test_tree.py _________________________
274s ImportError while importing test module '/usr/lib/python3/dist-packages/pykdtree/test_tree.py'.
274s Hint: make sure your test modules/packages have valid Python names.
274s Traceback:
274s /usr/lib/python3/dist-packages/pykdtree/__init__.py:4: in <module>
274s     from . import kdtree
274s E   ImportError: cannot import name 'kdtree' from partially initialized module 'pykdtree' (most likely due to a circular import) (/usr/lib/python3/dist-packages/pykdtree/__init__.py)
274s 
274s The above exception was the direct cause of the following exception:
274s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
274s     return _bootstrap._gcd_import(name[level:], package, level)
274s /usr/lib/python3/dist-packages/pykdtree/__init__.py:6: in <module>
274s     raise ImportError(
274s E   ImportError: Pykdtree failed to import its C extension. This usually means it was built with OpenMP (C-level parallelization library) support but could not find it on your system. To enable better performance OpenMP must be installed (ex. ``brew install omp`` on Mac with HomeBrew). Otherwise, try installing Pykdtree from source (ex. ``pip install --no-binary pykdtree --force-install pykdtree``).
274s =========================== short test summary info ============================
274s ERROR test_tree.py
274s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!!
274s =============================== 1 error in 0.09s ===============================
274s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.YTNde7/autopkgtest_tmp/build; python3.13 -m pytest --pyargs pykdtree
274s I: pybuild base:311: cd /tmp/autopkgtest.YTNde7/autopkgtest_tmp/build; python3.12 -m pytest --pyargs pykdtree
275s ============================= test session starts ==============================
275s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
275s rootdir: /tmp/autopkgtest.YTNde7/autopkgtest_tmp/build
275s configfile: pyproject.toml
275s plugins: typeguard-4.4.1
275s collected 17 items
275s 
275s test_tree.py .................                                           [100%]
275s 
275s ============================== 17 passed in 0.15s ==============================
275s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13
275s make: *** [/tmp/TsdChVzosk/run:4: pybuild-autopkgtest] Error 25
275s pybuild-autopkgtest: error: /tmp/TsdChVzosk/run pybuild-autopkgtest returned exit code 2
275s autopkgtest [10:20:09]: test pybuild-autopkgtest: -----------------------]
275s autopkgtest [10:20:09]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
275s pybuild-autopkgtest  FAIL non-zero exit status 25
275s autopkgtest [10:20:09]: @@@@@@@@@@@@@@@@@@@@ summary
275s pybuild-autopkgtest  FAIL non-zero exit status 25
289s virt: nova [W] Skipping flock for amd64
289s virt: Creating nova instance adt-plucky-amd64-pykdtree-20241113-101534-juju-7f2275-prod-proposed-migration-environment-2-829e83bd-4cd3-49c1-b9d8-9bfd102404f3 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...