0s autopkgtest [09:26:09]: starting date and time: 2024-11-13 09:26:09+0000 0s autopkgtest [09:26:09]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [09:26:09]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.szn3imbk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pybigwig --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-14.secgroup --name adt-plucky-amd64-pybigwig-20241113-092609-juju-7f2275-prod-proposed-migration-environment-15-09fec8e8-1142-48bb-8656-24978dbc0006 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 579s autopkgtest [09:35:48]: testbed dpkg architecture: amd64 579s autopkgtest [09:35:48]: testbed apt version: 2.9.8 579s autopkgtest [09:35:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 579s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 579s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 579s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 579s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 579s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 580s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 580s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 580s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 580s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 580s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 580s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 580s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 580s Fetched 2173 kB in 0s (5301 kB/s) 580s Reading package lists... 582s Reading package lists... 582s Building dependency tree... 582s Reading state information... 582s Calculating upgrade... 582s The following NEW packages will be installed: 582s python3.13-gdbm 582s The following packages will be upgraded: 582s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 582s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 582s Need to get 253 kB of archives. 582s After this operation, 147 kB of additional disk space will be used. 582s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 582s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 582s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 582s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 582s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 582s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 583s Fetched 253 kB in 0s (6431 kB/s) 583s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 583s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 583s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 583s Setting up python3-minimal (3.12.7-1) ... 583s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 583s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 583s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 583s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 583s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 583s Selecting previously unselected package python3.13-gdbm. 583s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 583s Unpacking python3.13-gdbm (3.13.0-2) ... 583s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 583s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 583s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 583s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 583s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 583s Setting up python3.13-gdbm (3.13.0-2) ... 583s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 583s Setting up python3 (3.12.7-1) ... 584s Setting up python3-gdbm:amd64 (3.12.7-1) ... 584s Processing triggers for man-db (2.12.1-3) ... 584s Processing triggers for libc-bin (2.40-1ubuntu3) ... 584s Reading package lists... 585s Building dependency tree... 585s Reading state information... 585s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 585s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 585s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 585s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 585s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 586s Reading package lists... 586s Reading package lists... 587s Building dependency tree... 587s Reading state information... 587s Calculating upgrade... 587s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 587s Reading package lists... 587s Building dependency tree... 587s Reading state information... 588s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 588s autopkgtest [09:35:57]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 588s autopkgtest [09:35:57]: @@@@@@@@@@@@@@@@@@@@ apt-source pybigwig 589s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (dsc) [2328 B] 589s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (tar) [31.8 kB] 589s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (diff) [4860 B] 589s gpgv: Signature made Sun Nov 3 16:14:37 2024 UTC 589s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 589s gpgv: issuer "emollier@debian.org" 589s gpgv: Can't check signature: No public key 589s dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.23+dfsg-1.dsc: no acceptable signature found 589s autopkgtest [09:35:58]: testing package pybigwig version 0.3.23+dfsg-1 589s autopkgtest [09:35:58]: build not needed 589s autopkgtest [09:35:58]: test command1: preparing testbed 591s Reading package lists... 591s Building dependency tree... 591s Reading state information... 591s Starting pkgProblemResolver with broken count: 0 591s Starting 2 pkgProblemResolver with broken count: 0 591s Done 592s The following additional packages will be installed: 592s libbigwig0t64 libblas3 libgfortran5 liblapack3 libpython3.13-minimal 592s libpython3.13-stdlib python3-all python3-numpy python3-pybigwig python3.13 592s python3.13-minimal 592s Suggested packages: 592s gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv 592s python3.13-doc binfmt-support 592s The following NEW packages will be installed: 592s autopkgtest-satdep libbigwig0t64 libblas3 libgfortran5 liblapack3 592s libpython3.13-minimal libpython3.13-stdlib python3-all python3-numpy 592s python3-pybigwig python3.13 python3.13-minimal 592s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 592s Need to get 14.3 MB/14.3 MB of archives. 592s After this operation, 58.2 MB of additional disk space will be used. 592s Get:1 /tmp/autopkgtest.AGH4vh/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [720 B] 592s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 592s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 592s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbigwig0t64 amd64 0.4.7+dfsg-3.1build2 [30.2 kB] 592s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 592s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 592s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 593s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 593s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 593s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 593s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 593s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybigwig amd64 0.3.23+dfsg-1 [41.6 kB] 593s Fetched 14.3 MB in 1s (13.8 MB/s) 593s Selecting previously unselected package libpython3.13-minimal:amd64. 593s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 593s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 593s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 593s Selecting previously unselected package python3.13-minimal. 593s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 593s Unpacking python3.13-minimal (3.13.0-2) ... 593s Selecting previously unselected package libbigwig0t64:amd64. 593s Preparing to unpack .../02-libbigwig0t64_0.4.7+dfsg-3.1build2_amd64.deb ... 593s Unpacking libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 593s Selecting previously unselected package libblas3:amd64. 593s Preparing to unpack .../03-libblas3_3.12.0-3build2_amd64.deb ... 593s Unpacking libblas3:amd64 (3.12.0-3build2) ... 593s Selecting previously unselected package libgfortran5:amd64. 593s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 593s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 594s Selecting previously unselected package liblapack3:amd64. 594s Preparing to unpack .../05-liblapack3_3.12.0-3build2_amd64.deb ... 594s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 594s Selecting previously unselected package libpython3.13-stdlib:amd64. 594s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 594s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 594s Selecting previously unselected package python3.13. 594s Preparing to unpack .../07-python3.13_3.13.0-2_amd64.deb ... 594s Unpacking python3.13 (3.13.0-2) ... 594s Selecting previously unselected package python3-all. 594s Preparing to unpack .../08-python3-all_3.12.7-1_amd64.deb ... 594s Unpacking python3-all (3.12.7-1) ... 594s Selecting previously unselected package python3-numpy. 594s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 594s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 594s Selecting previously unselected package python3-pybigwig. 594s Preparing to unpack .../10-python3-pybigwig_0.3.23+dfsg-1_amd64.deb ... 594s Unpacking python3-pybigwig (0.3.23+dfsg-1) ... 594s Selecting previously unselected package autopkgtest-satdep. 594s Preparing to unpack .../11-1-autopkgtest-satdep.deb ... 594s Unpacking autopkgtest-satdep (0) ... 594s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 594s Setting up libblas3:amd64 (3.12.0-3build2) ... 594s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 594s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 594s Setting up python3.13-minimal (3.13.0-2) ... 595s Setting up libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 595s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 595s Setting up liblapack3:amd64 (3.12.0-3build2) ... 595s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 595s Setting up python3.13 (3.13.0-2) ... 596s Setting up python3-all (3.12.7-1) ... 596s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 599s Setting up python3-pybigwig (0.3.23+dfsg-1) ... 599s Setting up autopkgtest-satdep (0) ... 599s Processing triggers for systemd (256.5-2ubuntu4) ... 599s Processing triggers for man-db (2.12.1-3) ... 600s Processing triggers for libc-bin (2.40-1ubuntu3) ... 602s (Reading database ... 77202 files and directories currently installed.) 602s Removing autopkgtest-satdep (0) ... 602s autopkgtest [09:36:11]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd pyBigWigTest ; $py test.py ; cd .. ; done 602s autopkgtest [09:36:11]: test command1: [----------------------- 603s Traceback (most recent call last): 603s File "/tmp/autopkgtest.AGH4vh/build.JS0/src/pyBigWigTest/test.py", line 1, in 603s import pyBigWig 603s ModuleNotFoundError: No module named 'pyBigWig' 603s autopkgtest [09:36:12]: test command1: -----------------------] 603s autopkgtest [09:36:12]: test command1: - - - - - - - - - - results - - - - - - - - - - 603s command1 FAIL non-zero exit status 1 603s autopkgtest [09:36:12]: test command1: - - - - - - - - - - stderr - - - - - - - - - - 603s Traceback (most recent call last): 603s File "/tmp/autopkgtest.AGH4vh/build.JS0/src/pyBigWigTest/test.py", line 1, in 603s import pyBigWig 603s ModuleNotFoundError: No module named 'pyBigWig' 603s autopkgtest [09:36:12]: @@@@@@@@@@@@@@@@@@@@ summary 603s command1 FAIL non-zero exit status 1 627s nova [W] Skipping flock for amd64 627s Creating nova instance adt-plucky-amd64-pybigwig-20241113-092609-juju-7f2275-prod-proposed-migration-environment-15-09fec8e8-1142-48bb-8656-24978dbc0006 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...