0s autopkgtest [19:37:12]: starting date and time: 2025-03-15 19:37:12+0000 0s autopkgtest [19:37:12]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:37:12]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qdfbx80c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade probalign --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-5.secgroup --name adt-plucky-amd64-probalign-20250315-193712-juju-7f2275-prod-proposed-migration-environment-2-5dbd80d4-30d1-4321-8453-2b2971f01ad6 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 50s autopkgtest [19:38:02]: testbed dpkg architecture: amd64 50s autopkgtest [19:38:02]: testbed apt version: 2.9.31ubuntu1 50s autopkgtest [19:38:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s autopkgtest [19:38:02]: testbed release detected to be: None 51s autopkgtest [19:38:03]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [86.6 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [62.1 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1884 B] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [166 kB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [330 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.6 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 51s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 51s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1242 kB in 0s (3818 kB/s) 53s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 55s The following NEW packages will be installed: 55s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 55s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 55s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 55s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 55s The following packages will be upgraded: 55s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 55s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 55s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 55s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 55s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 55s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 55s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 55s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 55s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 55s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 55s linux-headers-generic linux-headers-virtual linux-image-generic 55s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 55s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 55s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 55s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 55s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 55s python3.13-minimal rsync rsyslog strace xz-utils 55s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 807 MB of archives. 55s After this operation, 326 MB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 55s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 56s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 56s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 56s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 56s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 56s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 56s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 56s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 56s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 56s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 57s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 57s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 57s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 57s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 57s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 57s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 57s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 57s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 57s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 57s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 57s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 57s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 57s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 57s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 57s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 57s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 57s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 57s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 57s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 57s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 57s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 57s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 72s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 73s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 73s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 75s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 75s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 75s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 75s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 75s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 75s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 75s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 75s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 75s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 75s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 75s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 75s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 75s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 75s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 75s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 75s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 75s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 76s Preconfiguring packages ... 76s Fetched 807 MB in 21s (39.3 MB/s) 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 76s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 76s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 76s Setting up ncurses-bin (6.5+20250216-2) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 76s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 76s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 76s Setting up ncurses-base (6.5+20250216-2) ... 76s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 76s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 76s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 77s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 77s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 77s Setting up liblz4-1:amd64 (1.10.0-4) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 77s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 77s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 77s Setting up liblzma5:amd64 (5.6.4-1) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 77s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 77s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 78s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 78s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 78s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 78s Setting up apt (2.9.33) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 79s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 79s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 79s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 79s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 79s Setting up python3-minimal (3.13.2-2) ... 79s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 98s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 98s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 98s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 98s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 98s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 98s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 98s Setting up media-types (13.0.0) ... 98s Installing new version of config file /etc/mime.types ... 98s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 98s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 98s Setting up pci.ids (0.0~2025.03.09-1) ... 98s Setting up apt-utils (2.9.33) ... 98s Setting up libdebuginfod-common (0.192-4) ... 98s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 98s Setting up bpftool (7.6.0+6.14.0-10.10) ... 98s Setting up libestr0:amd64 (0.1.11-2) ... 98s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 98s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 98s Setting up dosfstools (4.2-1.2) ... 98s Setting up rsyslog (8.2412.0-2ubuntu2) ... 98s info: The user `syslog' is already a member of `adm'. 99s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 99s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 99s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 99s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 99s Setting up linux-headers-generic (6.14.0-10.10) ... 99s Setting up libjemalloc2:amd64 (5.3.0-3) ... 99s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 99s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 99s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 99s Installing new version of config file /etc/apparmor.d/openvpn ... 100s Reloading AppArmor profiles 102s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 102s No schema files found: doing nothing. 102s Setting up libglib2.0-data (2.84.0-1) ... 102s Setting up libncurses6:amd64 (6.5+20250216-2) ... 102s Setting up strace (6.13+ds-1ubuntu1) ... 102s Setting up xz-utils (5.6.4-1) ... 102s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 102s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 104s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 104s Setting up libpci3:amd64 (1:3.13.0-2) ... 104s Setting up python-apt-common (2.9.9build1) ... 104s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 104s Setting up pnp.ids (0.393-3) ... 104s Setting up libnl-3-200:amd64 (3.7.0-1) ... 104s Setting up python3.13-minimal (3.13.2-2) ... 105s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 105s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 105s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 105s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 105s Setting up rsync (3.4.1+ds1-3) ... 106s rsync.service is a disabled or a static unit not running, not starting it. 106s Setting up python3.13-gdbm (3.13.2-2) ... 106s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 106s Setting up ncurses-term (6.5+20250216-2) ... 106s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 106s Setting up libpython3.13:amd64 (3.13.2-2) ... 106s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 106s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 106s Setting up linux-headers-virtual (6.14.0-10.10) ... 106s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 106s Setting up python3.13 (3.13.2-2) ... 107s Setting up htop (3.4.0-2) ... 107s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 110s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 110s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 110s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 110s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 110s Setting up libfwupd3:amd64 (2.0.6-4) ... 110s Setting up python3 (3.13.2-2) ... 110s Setting up python3-markupsafe (2.1.5-1build4) ... 110s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 112s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 112s Setting up hwdata (0.393-3) ... 112s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 113s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 113s Setting up linux-perf (6.14.0-10.10) ... 113s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 113s Setting up python3-gi (3.50.0-4build1) ... 113s Setting up pciutils (1:3.13.0-2) ... 113s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 113s Setting up curl (8.12.1-3ubuntu1) ... 113s Setting up linux-image-virtual (6.14.0-10.10) ... 113s Setting up linux-tools-common (6.14.0-10.10) ... 113s Setting up fwupd (2.0.6-4) ... 113s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 113s fwupd.service is a disabled or a static unit not running, not starting it. 113s Setting up python3-systemd (235-1build6) ... 113s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 113s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 113s Setting up linux-image-generic (6.14.0-10.10) ... 113s Setting up python3-dbus (1.3.2-5build5) ... 114s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 114s Setting up linux-generic (6.14.0-10.10) ... 114s Setting up python3-apt (2.9.9build1) ... 114s Setting up python3-yaml (6.0.2-1build2) ... 114s Setting up python3-lazr.uri (1.0.6-6) ... 114s Setting up binutils (2.44-3ubuntu1) ... 114s Setting up cloud-init-base (25.1-0ubuntu3) ... 115s Setting up linux-virtual (6.14.0-10.10) ... 115s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 115s Setting up cloud-init (25.1-0ubuntu3) ... 115s Processing triggers for systemd (257.3-1ubuntu3) ... 116s Processing triggers for man-db (2.13.0-1) ... 118s Processing triggers for dbus (1.16.2-1ubuntu1) ... 118s Processing triggers for libc-bin (2.41-1ubuntu1) ... 118s Processing triggers for initramfs-tools (0.146ubuntu1) ... 118s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 118s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 130s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 130s /etc/kernel/postinst.d/initramfs-tools: 130s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 130s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 143s /etc/kernel/postinst.d/zz-update-grub: 143s Sourcing file `/etc/default/grub' 143s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 143s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 143s Generating grub configuration file ... 143s Found linux image: /boot/vmlinuz-6.14.0-10-generic 143s Found initrd image: /boot/initrd.img-6.14.0-10-generic 143s Found linux image: /boot/vmlinuz-6.12.0-16-generic 143s Found initrd image: /boot/initrd.img-6.12.0-16-generic 143s Found linux image: /boot/vmlinuz-6.11.0-8-generic 143s Found initrd image: /boot/initrd.img-6.11.0-8-generic 143s Warning: os-prober will not be executed to detect other bootable partitions. 143s Systems on them will not be added to the GRUB boot configuration. 143s Check GRUB_DISABLE_OS_PROBER documentation entry. 143s Adding boot menu entry for UEFI Firmware Settings ... 143s done 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Solving dependencies... 146s The following packages will be REMOVED: 146s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 146s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 146s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 146s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 146s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 146s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 146s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 146s linux-tools-6.12.0-16-generic* 146s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 146s After this operation, 545 MB disk space will be freed. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 146s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 146s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 146s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 146s Removing libpython3.12t64:amd64 (3.12.9-1) ... 146s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 146s Removing libnsl2:amd64 (1.3.0-3build3) ... 146s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 146s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 147s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 149s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 150s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 152s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 152s /etc/kernel/postrm.d/initramfs-tools: 152s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 153s /etc/kernel/postrm.d/zz-update-grub: 153s Sourcing file `/etc/default/grub' 153s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 153s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 153s Generating grub configuration file ... 153s Found linux image: /boot/vmlinuz-6.14.0-10-generic 153s Found initrd image: /boot/initrd.img-6.14.0-10-generic 153s Found linux image: /boot/vmlinuz-6.12.0-16-generic 153s Found initrd image: /boot/initrd.img-6.12.0-16-generic 153s Warning: os-prober will not be executed to detect other bootable partitions. 153s Systems on them will not be added to the GRUB boot configuration. 153s Check GRUB_DISABLE_OS_PROBER documentation entry. 153s Adding boot menu entry for UEFI Firmware Settings ... 153s done 153s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 153s W: Removing the running kernel 153s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 153s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 153s /etc/kernel/postrm.d/initramfs-tools: 153s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 154s /etc/kernel/postrm.d/zz-update-grub: 154s Sourcing file `/etc/default/grub' 154s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 154s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 154s Generating grub configuration file ... 154s Found linux image: /boot/vmlinuz-6.14.0-10-generic 154s Found initrd image: /boot/initrd.img-6.14.0-10-generic 154s Warning: os-prober will not be executed to detect other bootable partitions. 154s Systems on them will not be added to the GRUB boot configuration. 154s Check GRUB_DISABLE_OS_PROBER documentation entry. 154s Adding boot menu entry for UEFI Firmware Settings ... 154s done 154s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 155s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 156s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 156s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 156s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 156s Processing triggers for libc-bin (2.41-1ubuntu1) ... 156s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 156s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 156s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 156s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 156s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 156s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 156s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 156s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 157s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 157s autopkgtest [19:39:49]: upgrading testbed (apt dist-upgrade and autopurge) 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 158s Starting 2 pkgProblemResolver with broken count: 0 158s Done 158s Entering ResolveByKeep 159s 159s Calculating upgrade... 159s The following packages will be upgraded: 159s libc-bin libc-dev-bin libc6 libc6-dev locales 159s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 10.5 MB of archives. 159s After this operation, 1024 B of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 159s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 159s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 160s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 160s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 160s Preconfiguring packages ... 160s Fetched 10.5 MB in 1s (13.2 MB/s) 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 161s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 161s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 161s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 161s Setting up libc6:amd64 (2.41-1ubuntu2) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 161s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 161s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 161s Setting up libc-bin (2.41-1ubuntu2) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 161s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 161s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up locales (2.41-1ubuntu2) ... 162s Generating locales (this might take a while)... 164s en_US.UTF-8... done 164s Generation complete. 164s Setting up libc-dev-bin (2.41-1ubuntu2) ... 164s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 164s Processing triggers for man-db (2.13.0-1) ... 165s Processing triggers for systemd (257.3-1ubuntu3) ... 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 167s Solving dependencies... 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s autopkgtest [19:39:59]: rebooting testbed after setup commands that affected boot 171s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 185s autopkgtest [19:40:17]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 186s autopkgtest [19:40:18]: @@@@@@@@@@@@@@@@@@@@ apt-source probalign 188s Get:1 http://ftpmaster.internal/ubuntu plucky/universe probalign 1.4-10 (dsc) [1971 B] 188s Get:2 http://ftpmaster.internal/ubuntu plucky/universe probalign 1.4-10 (tar) [30.1 kB] 188s Get:3 http://ftpmaster.internal/ubuntu plucky/universe probalign 1.4-10 (diff) [4916 B] 188s gpgv: Signature made Thu Jan 19 13:18:09 2023 UTC 188s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 188s gpgv: issuer "tille@debian.org" 188s gpgv: Can't check signature: No public key 188s dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found 188s autopkgtest [19:40:20]: testing package probalign version 1.4-10 188s autopkgtest [19:40:20]: build not needed 188s autopkgtest [19:40:20]: test run-unit-test: preparing testbed 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 189s Starting pkgProblemResolver with broken count: 0 189s Starting 2 pkgProblemResolver with broken count: 0 189s Done 189s The following NEW packages will be installed: 189s probalign 189s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 189s Need to get 67.4 kB of archives. 189s After this operation, 158 kB of additional disk space will be used. 189s Get:1 http://ftpmaster.internal/ubuntu plucky/universe amd64 probalign amd64 1.4-10 [67.4 kB] 190s Fetched 67.4 kB in 0s (1110 kB/s) 190s Selecting previously unselected package probalign. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 190s Preparing to unpack .../probalign_1.4-10_amd64.deb ... 190s Unpacking probalign (1.4-10) ... 190s Setting up probalign (1.4-10) ... 190s Processing triggers for man-db (2.13.0-1) ... 191s autopkgtest [19:40:23]: test run-unit-test: [----------------------- 192s 192s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 192s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 192s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 192s 192s Loading sequence file: test_data_p.fas 192s Alignment tree: ((s1 s0) (s3 s2)) 192s 192s 192s >s1 192s LLSPNGAGWVVAPITMHDSAQINMPWQRRKDFLVQACVPVLKNLYKRKYEKVIKSIVYER 192s LYIFRGLWSGGCA--RYFDPPRCYKRSPEFYLGQFHGPLVHIGTMGHTECLHYGYDIQVN 192s CNKHDNKVTPK 192s >s0 192s -----------------------------KTLCVTDEVAKPRILNRKEYERVVIYGGYQW 192s TILFTKVWNGGSG--FKCDPNRCLKQAKLYYLPLFHAPIVEAAHQAGGKSLKFELDIRQV 192s SAMNASHKSGN 192s >s3 192s -----------------------------KVYYVEEAGSPTKGTFEEDYDGLELGAGFGW 192s RTQLVRLWAKDCFNDTSKEPNTCFRKPSKLYNGEVREIVLEAAGYTKAGDMRYAAVQSVA 192s AAHTRNKTTDS 192s >s2 192s -----------------------------KTFYINVDTNPMKALYKHEYNRELSGIPLDW 192s SSLVGRLWAKDCFTTKLNDPSERFRPPTKGFNKEDCLIVLAVNVQTHGGTLRFGIPERVK 192s CDRSRSKSTGK 192s 192s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 192s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 192s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 192s 192s Loading sequence file: test_data_n.fas 192s Alignment tree: ((s1 s2) (s0 s3)) 192s 192s >s1 192s ACGTTT-----TCGAACCCCCCGAAATTTTGGGCGCGCG-------------CACACACT 192s CATCACTCTCGACGCAAAAC------GGCT---GCACACACTCATCACTC----TCGACG 192s C-AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 192s >s0 192s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-------------CACACACT 192s CATCACTCTCGACGCAAAACATTTTGGGCGCGCGCACACACTCATCACTCATTTT-G--- 192s ---------GGC-GC-------GC-GCACACACTCATCACTC 192s >s3 192s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-------------CACACACT 192s CATCACTCTCGACGCAAAACATTTTGGGCGCGCGCACACACTCG----------TCG-CG 192s CGAAACTA---C-GC---ACGTGC-GCACACACTCATCACTC 192s >s2 192s ACGTTT-----TCGAACCCCCCGAAATTTT---C-CCCCCCCCCCCCCCCCCCCC-CACT 192s CATCACTCTCGACGCAAAAC------GGCT---GCACACACTCATCACTC----TCGACG 192s C-AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 192s 192s 192s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 192s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 192s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 192s 192s Loading sequence file: test_data_p.fas 192s Computing posterior matrix: (1) s1 vs. (2) s0 -- 192s 0 129 192s 1 100 192s ------------- 192s 0.5564424396 192s Computing posterior matrix: (1) s1 vs. (3) s3 -- 192s 0 129 192s 2 102 192s ------------- 192s 0.2607336938 192s Computing posterior matrix: (1) s1 vs. (4) s2 -- 192s 0 129 192s 3 102 192s ------------- 192s 0.4842562675 192s Computing posterior matrix: (2) s0 vs. (3) s3 -- 192s 1 100 192s 2 102 192s ------------- 192s 0.3741489649 192s Computing posterior matrix: (2) s0 vs. (4) s2 -- 192s 1 100 192s 3 102 192s ------------- 192s 0.3683230281 192s Computing posterior matrix: (3) s3 vs. (4) s2 -- 192s 2 102 192s 3 102 192s ------------- 192s 0.8540496826 192s Relaxing (1) s1 vs. (2) s0: 654 --> 516 -- done. 192s Relaxing (1) s1 vs. (3) s3: 864 --> 608 -- done. 192s Relaxing (1) s1 vs. (4) s2: 628 --> 499 -- done. 192s Relaxing (2) s0 vs. (3) s3: 694 --> 531 -- done. 192s Relaxing (2) s0 vs. (4) s2: 766 --> 588 -- done. 192s Relaxing (3) s3 vs. (4) s2: 249 --> 227 -- done. 192s Relaxing (1) s1 vs. (2) s0: 516 --> 397 -- done. 192s Relaxing (1) s1 vs. (3) s3: 608 --> 430 -- done. 192s Relaxing (1) s1 vs. (4) s2: 499 --> 405 -- done. 192s Relaxing (2) s0 vs. (3) s3: 531 --> 402 -- done. 192s Relaxing (2) s0 vs. (4) s2: 588 --> 425 -- done. 192s Relaxing (3) s3 vs. (4) s2: 227 --> 203 -- done. 192s 192s Alignment tree: ((s1 s0) (s3 s2)) 192s 192s [0] vs. [1]: 0.2394420803 192s [2] vs. [3]: 0.3004739285 192s [0,1] vs. [2,3]: 0.2197821587 192s [0,2,3] vs. [1]: 0.2272425592 192s [0,1] vs. [2,3]: 0.2197821587 192s [0,1,3] vs. [2]: 0.2441207469 192s [1,2] vs. [0,3]: 0.2414343655 192s [0,2,3] vs. [1]: 0.2272425592 192s [3] vs. [0,1,2]: 0.2492380887 192s [0,1,2] vs. [3]: 0.2492380887 192s [2,3] vs. [0,1]: 0.2197821587 192s [0,2] vs. [1,3]: 0.2459582537 192s [1] vs. [0,2,3]: 0.2272425592 192s [0,2] vs. [1,3]: 0.2459582537 192s [0,3] vs. [1,2]: 0.2414343655 192s [3] vs. [0,1,2]: 0.2492380887 192s [0,1,3] vs. [2]: 0.2441207469 192s [1,3] vs. [0,2]: 0.2459582537 192s [0,1,3] vs. [2]: 0.2441207469 192s [1,3] vs. [0,2]: 0.2459582537 192s [2] vs. [0,1,3]: >s1 192s LLSPNGAGWVVAPITMHDSAQINMPWQRRKDFLVQACVPVLKNLYKRKYEKVIKSIVYER 192s LYIFRGLWSGGCA--RYFDPPRCYKRSPEFYLGQFHGPLVHIGTMGHTECLHYGYDIQVN 192s CNKHDNKVTPK 192s >s0 192s -----------------------------KTLCVTDEVAKPRILNRKEYERVVIYGGYQW 192s TILFTKVWNGGSG--FKCDPNRCLKQAKLYYLPLFHAPIVEAAHQAGGKSLKFELDIRQV 192s SAMNASHKSGN 192s >s3 192s -----------------------------KVYYVEEAGSPTKGTFEEDYDGLELGAGFGW 192s RTQLVRLWAKDCFNDTSKEPNTCFRKPSKLYNGEVREIVLEAAGYTKAGDMRYAAVQSVA 192s AAHTRNKTTDS 192s >s2 192s -----------------------------KTFYINVDTNPMKALYKHEYNRELSGIPLDW 192s SSLVGRLWAKDCFTTKLNDPSERFRPPTKGFNKEDCLIVLAVNVQTHGGTLRFGIPERVK 192s CDRSRSKSTGK 192s 0.2441207469 192s [0] vs. [1,2,3]: 0.2267541587 192s [2,3] vs. [0,1]: 0.2197821587 192s [1] vs. [0,2,3]: 0.2272425592 192s [2] vs. [0,1,3]: 0.2441207469 192s [3] vs. [0,1,2]: 0.2492380887 192s [0] vs. [1,2,3]: 0.2267541587 192s [0,1,2] vs. [3]: 0.2492380887 192s [0] vs. [1,2,3]: 0.2267541587 192s [0,3] vs. [1,2]: 0.2414343655 192s [0,1,3] vs. [2]: 0.2441207469 192s [1,2,3] vs. [0]: 0.2267541587 192s [0,1,2] vs. [3]: 0.2492380887 192s [0,1,3] vs. [2]: 0.2441207469 192s [1,2] vs. [0,3]: 0.2414343655 192s [1,3] vs. [0,2]: 0.2459582537 192s [0,1] vs. [2,3]: 0.2197821587 192s [1,3] vs. [0,2]: 0.2459582537 192s [1,3] vs. [0,2]: 0.2459582537 192s [1,2,3] vs. [0]: 0.2267541587 192s [0] vs. [1,2,3]: 0.2267541587 192s [0,2] vs. [1,3]: 0.2459582537 192s [0,2,3] vs. [1]: 0.2272425592 192s [0,1,2] vs. [3]: 0.2492380887 192s [1,2] vs. [0,3]: 0.2414343655 192s [0,1,3] vs. [2]: 0.2441207469 192s [1,2,3] vs. [0]: 0.2267541587 192s [0,1] vs. [2,3]: 0.2197821587 192s [0,1,3] vs. [2]: 0.2441207469 192s [2,3] vs. [0,1]: 0.2197821587 192s [0] vs. [1,2,3]: 0.2267541587 192s [0,1,2] vs. [3]: 0.2492380887 192s [1,3] vs. [0,2]: 0.2459582537 192s [1,3] vs. [0,2]: 0.2459582537 192s [2,3] vs. [0,1]: 0.2197821587 192s [2] vs. [0,1,3]: 0.2441207469 192s [2,3] vs. [0,1]: 0.2197821587 192s [0,3] vs. [1,2]: 0.2414343655 192s [2,3] vs. [0,1]: 0.2197821587 192s [0,2,3] vs. [1]: 0.2272425592 192s [0,3] vs. [1,2]: 0.2414343655 192s [1] vs. [0,2,3]: 0.2272425592 192s [3] vs. [0,1,2]: 0.2492380887 192s [1,2] vs. [0,3]: 0.2414343655 192s [1,2,3] vs. [0]: 0.2267541587 192s [0,2] vs. [1,3]: 0.2459582537 192s [1,2,3] vs. [0]: 0.2267541587 192s [0,2,3] vs. [1]: 0.2272425592 192s [0,3] vs. [1,2]: 0.2414343655 192s [1,2] vs. [0,3]: 0.2414343655 192s [0,2] vs. [1,3]: 0.2459582537 192s [2,3] vs. [0,1]: 0.2197821587 192s [3] vs. [0,1,2]: 0.2492380887 192s [1,2] vs. [0,3]: 0.2414343655 192s [0,2,3] vs. [1]: 0.2272425592 192s [1,2] vs. [0,3]: 0.2414343655 192s [0] vs. [1,2,3]: 0.2267541587 192s [3] vs. [0,1,2]: 0.2492380887 192s [1] vs. [0,2,3]: 0.2272425592 192s [0,1,3] vs. [2]: 0.2441207469 192s [3] vs. [0,1,2]: 0.2492380887 192s [0,1,2] vs. [3]: 0.2492380887 192s [1] vs. [0,2,3]: 0.2272425592 192s [0,1,2] vs. [3]: 0.2492380887 192s [1] vs. [0,2,3]: 0.2272425592 192s [0,2,3] vs. [1]: 0.2272425592 192s [0,1,3] vs. [2]: 0.2441207469 192s [0,3] vs. [1,2]: 0.2414343655 192s [1] vs. [0,2,3]: 0.2272425592 192s 192s 192s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 192s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 192s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 192s 192s Loading sequence file: test_data_n.fas 192s Alignment tree: ((s1 s2) (s0 s3)) 192s 192s >s1 192s 192s ACGTTT-----TCGAACCCCCCGAAATTTTGGGCGCGCG-----------CACACACTCA 192s TCACTCTCGACGCAAAAC------GGCTG----CACACACTCATCACTC---TCGACGC- 192s AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 192s >s2 192s ACGTTT-----TCGAACCCCCCGAAATTTT---CCCCCCCCCCCCCCCCCCCCCCACTCA 192s TCACTCTCGACGCAAAAC------GGCTG----CACACACTCATCACTC---TCGACGC- 192s AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 192s >s0 192s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-----------CACACACTCA 192s TCACTCTCGACGCAAAACATTTTGGGC-GCGCGCACACACTCATCACTCATTTTG----- 192s -------GGC-GC-------GC-GCACACACTCATCACTC 192s >s3 192s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-----------CACACACTCA 192s TCACTCTCGACGCAAAACATTTTGGGC-G----CGCGCA--CA-CACTC--GTCG-CGCG 192s AAACTA---C-GC---ACGTGC-GCACACACTCATCACTC 192s autopkgtest [19:40:24]: test run-unit-test: -----------------------] 192s autopkgtest [19:40:24]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 192s run-unit-test PASS 192s autopkgtest [19:40:24]: @@@@@@@@@@@@@@@@@@@@ summary 192s run-unit-test PASS 208s nova [W] Skipping flock for amd64 208s Creating nova instance adt-plucky-amd64-probalign-20250315-193712-juju-7f2275-prod-proposed-migration-environment-2-5dbd80d4-30d1-4321-8453-2b2971f01ad6 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 208s nova [W] Timed out waiting for 3a3d8494-c778-46ae-80ea-6ab53fdd9877 to get deleted.