0s autopkgtest [19:55:08]: starting date and time: 2024-11-16 19:55:08+0000 0s autopkgtest [19:55:08]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:55:08]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.40bw8fbo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:openmpi,src:armci-mpi,src:murasaki --apt-upgrade prime-phylo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openmpi/5.0.5-6 armci-mpi/0.4-4 murasaki/1.68.6-14' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-25.secgroup --name adt-plucky-amd64-prime-phylo-20241116-195508-juju-7f2275-prod-proposed-migration-environment-20-07e6169b-f0e7-4a2b-a43d-1c3117712f42 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 49s autopkgtest [19:55:57]: testbed dpkg architecture: amd64 50s autopkgtest [19:55:58]: testbed apt version: 2.9.8 50s autopkgtest [19:55:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 51s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1005 kB] 51s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.7 kB] 51s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [172 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [819 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [301 kB] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 51s Fetched 2636 kB in 1s (3204 kB/s) 51s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s The following NEW packages will be installed: 54s python3.13-gdbm 54s The following packages will be upgraded: 54s debianutils libftdi1-2 libnvme1t64 python3-gdbm 54s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 252 kB of archives. 54s After this operation, 104 kB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 debianutils amd64 5.21 [92.9 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 54s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-7build1 [30.2 kB] 54s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11-2 [88.7 kB] 54s Fetched 252 kB in 0s (631 kB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 55s Preparing to unpack .../debianutils_5.21_amd64.deb ... 55s Unpacking debianutils (5.21) over (5.20) ... 55s Setting up debianutils (5.21) ... 55s Selecting previously unselected package python3.13-gdbm. 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 55s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 55s Unpacking python3.13-gdbm (3.13.0-2) ... 55s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 55s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 55s Preparing to unpack .../libftdi1-2_1.5-7build1_amd64.deb ... 55s Unpacking libftdi1-2:amd64 (1.5-7build1) over (1.5-7) ... 55s Preparing to unpack .../libnvme1t64_1.11-2_amd64.deb ... 55s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 55s Setting up libftdi1-2:amd64 (1.5-7build1) ... 55s Setting up libnvme1t64 (1.11-2) ... 55s Setting up python3.13-gdbm (3.13.0-2) ... 55s Setting up python3-gdbm:amd64 (3.12.7-1) ... 55s Processing triggers for man-db (2.13.0-1) ... 56s Processing triggers for libc-bin (2.40-1ubuntu3) ... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 57s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 58s Reading package lists... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Calculating upgrade... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s autopkgtest [19:56:09]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 61s autopkgtest [19:56:09]: @@@@@@@@@@@@@@@@@@@@ apt-source prime-phylo 63s Get:1 http://ftpmaster.internal/ubuntu plucky/universe prime-phylo 1.0.11-12 (dsc) [2366 B] 63s Get:2 http://ftpmaster.internal/ubuntu plucky/universe prime-phylo 1.0.11-12 (tar) [751 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky/universe prime-phylo 1.0.11-12 (diff) [10.5 kB] 63s gpgv: Signature made Wed Aug 7 15:34:26 2024 UTC 63s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 63s gpgv: issuer "emollier@debian.org" 63s gpgv: Can't check signature: No public key 63s dpkg-source: warning: cannot verify inline signature for ./prime-phylo_1.0.11-12.dsc: no acceptable signature found 63s autopkgtest [19:56:11]: testing package prime-phylo version 1.0.11-12 63s autopkgtest [19:56:11]: build not needed 64s autopkgtest [19:56:12]: test run-unit-test: preparing testbed 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s The following additional packages will be installed: 67s libamd-comgr2 libamdhip64-5 libblas3 libboost-mpi1.83.0 67s libboost-serialization1.83.0 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 67s libfabric1 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 67s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 67s libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 67s libpsm2-2 librdmacm1t64 libucx0 libxnvctrl0 ocl-icd-libopencl1 prime-phylo 67s Suggested packages: 67s libhwloc-contrib-plugins opencl-icd njplot treeviewx muscle probalign mafft 67s python3-biopython mrbayes phyml raxml 67s The following NEW packages will be installed: 67s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libblas3 libboost-mpi1.83.0 67s libboost-serialization1.83.0 libdrm-amdgpu1 libevent-pthreads-2.1-7t64 67s libfabric1 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 67s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 67s libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 libpsm-infinipath1 67s libpsm2-2 librdmacm1t64 libucx0 libxnvctrl0 ocl-icd-libopencl1 prime-phylo 67s 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 61.4 MB/61.4 MB of archives. 67s After this operation, 251 MB of additional disk space will be used. 67s Get:1 /tmp/autopkgtest.KxXV9b/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 67s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 69s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 71s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 71s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 71s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 71s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 72s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 72s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2ubuntu2 [343 kB] 72s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 72s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 73s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 73s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 73s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 73s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 73s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 73s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 73s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 73s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 73s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 73s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 73s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 73s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 73s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 73s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 73s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 73s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2ubuntu2 [271 kB] 73s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 74s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 74s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 prime-phylo amd64 1.0.11-12 [823 kB] 75s Fetched 61.4 MB in 7s (9072 kB/s) 75s Selecting previously unselected package libllvm17t64:amd64. 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 75s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 75s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 75s Selecting previously unselected package libamd-comgr2:amd64. 75s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 75s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 75s Selecting previously unselected package libdrm-amdgpu1:amd64. 75s Preparing to unpack .../02-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 75s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 75s Selecting previously unselected package libhsakmt1:amd64. 75s Preparing to unpack .../03-libhsakmt1_5.7.0-1build1_amd64.deb ... 75s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 75s Selecting previously unselected package libhsa-runtime64-1. 75s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 75s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 75s Selecting previously unselected package libamdhip64-5. 75s Preparing to unpack .../05-libamdhip64-5_5.7.1-5_amd64.deb ... 75s Unpacking libamdhip64-5 (5.7.1-5) ... 75s Selecting previously unselected package libblas3:amd64. 75s Preparing to unpack .../06-libblas3_3.12.0-3build2_amd64.deb ... 75s Unpacking libblas3:amd64 (3.12.0-3build2) ... 75s Selecting previously unselected package libboost-serialization1.83.0:amd64. 76s Preparing to unpack .../07-libboost-serialization1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 76s Unpacking libboost-serialization1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 76s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 76s Preparing to unpack .../08-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 76s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 76s Selecting previously unselected package libpsm-infinipath1. 76s Preparing to unpack .../09-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 76s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 76s Selecting previously unselected package libpsm2-2. 76s Preparing to unpack .../10-libpsm2-2_11.2.185-2.1_amd64.deb ... 76s Unpacking libpsm2-2 (11.2.185-2.1) ... 76s Selecting previously unselected package librdmacm1t64:amd64. 76s Preparing to unpack .../11-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 76s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 76s Selecting previously unselected package libfabric1:amd64. 76s Preparing to unpack .../12-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 76s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 76s Selecting previously unselected package libhwloc15:amd64. 76s Preparing to unpack .../13-libhwloc15_2.11.2-1_amd64.deb ... 76s Unpacking libhwloc15:amd64 (2.11.2-1) ... 76s Selecting previously unselected package libmunge2:amd64. 76s Preparing to unpack .../14-libmunge2_0.5.15-4build1_amd64.deb ... 76s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 76s Selecting previously unselected package libpciaccess0:amd64. 76s Preparing to unpack .../15-libpciaccess0_0.17-3build1_amd64.deb ... 76s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 76s Selecting previously unselected package libxnvctrl0:amd64. 76s Preparing to unpack .../16-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 76s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 76s Selecting previously unselected package ocl-icd-libopencl1:amd64. 76s Preparing to unpack .../17-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 76s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 76s Selecting previously unselected package libhwloc-plugins:amd64. 76s Preparing to unpack .../18-libhwloc-plugins_2.11.2-1_amd64.deb ... 76s Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... 76s Selecting previously unselected package libpmix2t64:amd64. 76s Preparing to unpack .../19-libpmix2t64_5.0.3-2_amd64.deb ... 76s Unpacking libpmix2t64:amd64 (5.0.3-2) ... 76s Selecting previously unselected package libgomp1:amd64. 76s Preparing to unpack .../20-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libibumad3:amd64. 76s Preparing to unpack .../21-libibumad3_52.0-2ubuntu1_amd64.deb ... 76s Unpacking libibumad3:amd64 (52.0-2ubuntu1) ... 76s Selecting previously unselected package libibmad5:amd64. 76s Preparing to unpack .../22-libibmad5_52.0-2ubuntu1_amd64.deb ... 76s Unpacking libibmad5:amd64 (52.0-2ubuntu1) ... 76s Selecting previously unselected package libucx0:amd64. 76s Preparing to unpack .../23-libucx0_1.17.0+ds-3build1_amd64.deb ... 76s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 76s Selecting previously unselected package libopenmpi3t64:amd64. 76s Preparing to unpack .../24-libopenmpi3t64_5.0.5-6_amd64.deb ... 76s Unpacking libopenmpi3t64:amd64 (5.0.5-6) ... 76s Selecting previously unselected package libboost-mpi1.83.0. 76s Preparing to unpack .../25-libboost-mpi1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 76s Unpacking libboost-mpi1.83.0 (1.83.0-3.2ubuntu2) ... 76s Selecting previously unselected package libgfortran5:amd64. 76s Preparing to unpack .../26-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package liblapack3:amd64. 76s Preparing to unpack .../27-liblapack3_3.12.0-3build2_amd64.deb ... 76s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 76s Selecting previously unselected package prime-phylo. 76s Preparing to unpack .../28-prime-phylo_1.0.11-12_amd64.deb ... 76s Unpacking prime-phylo (1.0.11-12) ... 76s Selecting previously unselected package autopkgtest-satdep. 76s Preparing to unpack .../29-1-autopkgtest-satdep.deb ... 76s Unpacking autopkgtest-satdep (0) ... 76s Setting up libpciaccess0:amd64 (0.17-3build1) ... 76s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 76s Setting up libibumad3:amd64 (52.0-2ubuntu1) ... 76s Setting up libibmad5:amd64 (52.0-2ubuntu1) ... 76s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 76s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 76s Setting up libboost-serialization1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 76s Setting up libblas3:amd64 (3.12.0-3build2) ... 76s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 76s Setting up libmunge2:amd64 (0.5.15-4build1) ... 76s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 76s Setting up libhwloc15:amd64 (2.11.2-1) ... 76s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 76s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 76s Setting up libpsm2-2 (11.2.185-2.1) ... 76s Setting up librdmacm1t64:amd64 (52.0-2ubuntu1) ... 76s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 76s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 76s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 76s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 76s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 76s Setting up liblapack3:amd64 (3.12.0-3build2) ... 76s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 76s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 76s Setting up libpmix2t64:amd64 (5.0.3-2) ... 76s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 76s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 76s Setting up libamdhip64-5 (5.7.1-5) ... 76s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 76s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 76s Setting up libboost-mpi1.83.0 (1.83.0-3.2ubuntu2) ... 76s Setting up prime-phylo (1.0.11-12) ... 76s Setting up autopkgtest-satdep (0) ... 76s Processing triggers for man-db (2.13.0-1) ... 77s Processing triggers for libc-bin (2.40-1ubuntu3) ... 81s (Reading database ... 75882 files and directories currently installed.) 81s Removing autopkgtest-satdep (0) ... 88s autopkgtest [19:56:36]: test run-unit-test: [----------------------- 89s treesize: error while loading shared libraries: libmpi_cxx.so.40: cannot open shared object file: No such file or directory 89s autopkgtest [19:56:37]: test run-unit-test: -----------------------] 90s run-unit-test FAIL non-zero exit status 127 90s autopkgtest [19:56:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 90s autopkgtest [19:56:38]: @@@@@@@@@@@@@@@@@@@@ summary 90s run-unit-test FAIL non-zero exit status 127 98s nova [W] Skipping flock for amd64 98s Creating nova instance adt-plucky-amd64-prime-phylo-20241116-195508-juju-7f2275-prod-proposed-migration-environment-20-07e6169b-f0e7-4a2b-a43d-1c3117712f42 from image adt/ubuntu-plucky-amd64-server-20241116.img (UUID b82727a2-bb7f-4d76-a476-69f4305c6899)...