0s autopkgtest [21:07:56]: starting date and time: 2025-03-15 21:07:56+0000 0s autopkgtest [21:07:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:07:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rykar_ea/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade parsnp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-3.secgroup --name adt-plucky-amd64-parsnp-20250315-210756-juju-7f2275-prod-proposed-migration-environment-2-fc8fb122-c6aa-414c-9661-7599f02a1fdd --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 36s autopkgtest [21:08:32]: testbed dpkg architecture: amd64 36s autopkgtest [21:08:32]: testbed apt version: 2.9.31ubuntu1 37s autopkgtest [21:08:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 37s autopkgtest [21:08:33]: testbed release detected to be: None 37s autopkgtest [21:08:33]: updating testbed package index (apt update) 37s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 37s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 37s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 37s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 37s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 37s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 37s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 37s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [62.1 kB] 37s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [86.6 kB] 37s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1884 B] 37s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 37s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [330 kB] 37s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [166 kB] 37s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.6 kB] 37s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 37s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 37s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 38s Fetched 1242 kB in 0s (7054 kB/s) 39s Reading package lists... 39s Reading package lists... 39s Building dependency tree... 39s Reading state information... 40s Calculating upgrade... 40s Calculating upgrade... 40s The following package was automatically installed and is no longer required: 40s libnl-genl-3-200 40s Use 'sudo apt autoremove' to remove it. 40s The following NEW packages will be installed: 40s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 40s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 40s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 40s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 40s The following packages will be upgraded: 40s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 40s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 40s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 40s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 40s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 40s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 40s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 40s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 40s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 40s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 40s linux-headers-generic linux-headers-virtual linux-image-generic 40s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 40s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 40s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 40s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 40s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 40s python3.13-minimal rsync rsyslog strace xz-utils 40s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 40s Need to get 807 MB of archives. 40s After this operation, 326 MB of additional disk space will be used. 40s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 40s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 40s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 40s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 40s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 40s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 40s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 40s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 40s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 40s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 40s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 40s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 40s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 40s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 40s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 40s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 40s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 40s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 40s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 40s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 40s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 40s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 40s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 40s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 40s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 40s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 40s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 40s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 40s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 40s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 40s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 40s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 40s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 40s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 40s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 40s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 40s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 40s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 40s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 40s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 40s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 40s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 40s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 40s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 40s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 40s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 40s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 40s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 40s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 40s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 40s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 40s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 40s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 40s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 40s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 40s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 40s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 40s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 40s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 40s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 40s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 40s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 40s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 40s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 40s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 40s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 40s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 40s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 40s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 40s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 40s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 40s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 40s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 40s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 44s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 44s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 44s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 46s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 46s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 46s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 46s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 46s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 46s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 46s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 46s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 46s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 46s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 46s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 46s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 46s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 46s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 46s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 46s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 46s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 46s Preconfiguring packages ... 46s Fetched 807 MB in 6s (138 MB/s) 46s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 46s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 46s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 47s Setting up ncurses-bin (6.5+20250216-2) ... 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 47s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 47s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 47s Setting up ncurses-base (6.5+20250216-2) ... 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 47s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 47s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 47s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 47s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 47s Setting up liblz4-1:amd64 (1.10.0-4) ... 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 47s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 47s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 47s Setting up liblzma5:amd64 (5.6.4-1) ... 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 47s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 47s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 48s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 48s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 48s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 48s Setting up apt (2.9.33) ... 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 48s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 48s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 48s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 48s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 49s Setting up python3-minimal (3.13.2-2) ... 49s (Reading database ... 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Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 64s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 64s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 64s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 64s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 64s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 64s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 64s Setting up media-types (13.0.0) ... 64s Installing new version of config file /etc/mime.types ... 64s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 64s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 64s Setting up pci.ids (0.0~2025.03.09-1) ... 64s Setting up apt-utils (2.9.33) ... 64s Setting up libdebuginfod-common (0.192-4) ... 65s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 65s Setting up bpftool (7.6.0+6.14.0-10.10) ... 65s Setting up libestr0:amd64 (0.1.11-2) ... 65s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 65s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 65s Setting up dosfstools (4.2-1.2) ... 65s Setting up rsyslog (8.2412.0-2ubuntu2) ... 65s info: The user `syslog' is already a member of `adm'. 66s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 66s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 66s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 66s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 66s Setting up linux-headers-generic (6.14.0-10.10) ... 66s Setting up libjemalloc2:amd64 (5.3.0-3) ... 66s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 66s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 66s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 66s Installing new version of config file /etc/apparmor.d/openvpn ... 67s Reloading AppArmor profiles 68s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 68s No schema files found: doing nothing. 68s Setting up libglib2.0-data (2.84.0-1) ... 68s Setting up libncurses6:amd64 (6.5+20250216-2) ... 68s Setting up strace (6.13+ds-1ubuntu1) ... 68s Setting up xz-utils (5.6.4-1) ... 68s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 68s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 70s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 70s Setting up libpci3:amd64 (1:3.13.0-2) ... 70s Setting up python-apt-common (2.9.9build1) ... 70s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 70s Setting up pnp.ids (0.393-3) ... 70s Setting up libnl-3-200:amd64 (3.7.0-1) ... 70s Setting up python3.13-minimal (3.13.2-2) ... 71s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 71s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 71s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 71s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 71s Setting up rsync (3.4.1+ds1-3) ... 72s rsync.service is a disabled or a static unit not running, not starting it. 72s Setting up python3.13-gdbm (3.13.2-2) ... 72s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 72s Setting up ncurses-term (6.5+20250216-2) ... 72s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 72s Setting up libpython3.13:amd64 (3.13.2-2) ... 72s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 72s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 72s Setting up linux-headers-virtual (6.14.0-10.10) ... 72s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 72s Setting up python3.13 (3.13.2-2) ... 72s Setting up htop (3.4.0-2) ... 72s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 74s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 74s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 74s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 74s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 74s Setting up libfwupd3:amd64 (2.0.6-4) ... 74s Setting up python3 (3.13.2-2) ... 75s Setting up python3-markupsafe (2.1.5-1build4) ... 75s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 77s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 77s Setting up hwdata (0.393-3) ... 77s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 77s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 77s Setting up linux-perf (6.14.0-10.10) ... 77s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 77s Setting up python3-gi (3.50.0-4build1) ... 77s Setting up pciutils (1:3.13.0-2) ... 77s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 77s Setting up curl (8.12.1-3ubuntu1) ... 77s Setting up linux-image-virtual (6.14.0-10.10) ... 77s Setting up linux-tools-common (6.14.0-10.10) ... 77s Setting up fwupd (2.0.6-4) ... 78s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 78s Setting up python3-systemd (235-1build6) ... 78s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 78s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 78s Setting up linux-image-generic (6.14.0-10.10) ... 78s Setting up python3-dbus (1.3.2-5build5) ... 78s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 78s Setting up linux-generic (6.14.0-10.10) ... 78s Setting up python3-apt (2.9.9build1) ... 79s Setting up python3-yaml (6.0.2-1build2) ... 79s Setting up python3-lazr.uri (1.0.6-6) ... 79s Setting up binutils (2.44-3ubuntu1) ... 79s Setting up cloud-init-base (25.1-0ubuntu3) ... 80s Setting up linux-virtual (6.14.0-10.10) ... 80s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 80s Setting up cloud-init (25.1-0ubuntu3) ... 80s Processing triggers for systemd (257.3-1ubuntu3) ... 80s Processing triggers for man-db (2.13.0-1) ... 82s Processing triggers for dbus (1.16.2-1ubuntu1) ... 82s Processing triggers for libc-bin (2.41-1ubuntu1) ... 82s Processing triggers for initramfs-tools (0.146ubuntu1) ... 82s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 82s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 92s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 92s /etc/kernel/postinst.d/initramfs-tools: 92s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 92s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 102s /etc/kernel/postinst.d/zz-update-grub: 102s Sourcing file `/etc/default/grub' 102s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 102s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 102s Generating grub configuration file ... 102s Found linux image: /boot/vmlinuz-6.14.0-10-generic 102s Found initrd image: /boot/initrd.img-6.14.0-10-generic 102s Found linux image: /boot/vmlinuz-6.12.0-16-generic 102s Found initrd image: /boot/initrd.img-6.12.0-16-generic 102s Found linux image: /boot/vmlinuz-6.11.0-8-generic 102s Found initrd image: /boot/initrd.img-6.11.0-8-generic 102s Warning: os-prober will not be executed to detect other bootable partitions. 102s Systems on them will not be added to the GRUB boot configuration. 102s Check GRUB_DISABLE_OS_PROBER documentation entry. 102s Adding boot menu entry for UEFI Firmware Settings ... 102s done 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Solving dependencies... 104s The following packages will be REMOVED: 104s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 104s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 104s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 104s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 104s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 104s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 104s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 104s linux-tools-6.12.0-16-generic* 105s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 105s After this operation, 545 MB disk space will be freed. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 105s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 105s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 105s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 105s Removing libpython3.12t64:amd64 (3.12.9-1) ... 105s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 105s Removing libnsl2:amd64 (1.3.0-3build3) ... 105s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 105s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 105s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 107s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 108s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 110s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 110s /etc/kernel/postrm.d/initramfs-tools: 110s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 110s /etc/kernel/postrm.d/zz-update-grub: 110s Sourcing file `/etc/default/grub' 110s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 110s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 110s Generating grub configuration file ... 110s Found linux image: /boot/vmlinuz-6.14.0-10-generic 110s Found initrd image: /boot/initrd.img-6.14.0-10-generic 110s Found linux image: /boot/vmlinuz-6.12.0-16-generic 110s Found initrd image: /boot/initrd.img-6.12.0-16-generic 111s Warning: os-prober will not be executed to detect other bootable partitions. 111s Systems on them will not be added to the GRUB boot configuration. 111s Check GRUB_DISABLE_OS_PROBER documentation entry. 111s Adding boot menu entry for UEFI Firmware Settings ... 111s done 111s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 111s W: Removing the running kernel 111s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 111s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 111s /etc/kernel/postrm.d/initramfs-tools: 111s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 111s /etc/kernel/postrm.d/zz-update-grub: 111s Sourcing file `/etc/default/grub' 111s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 111s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 111s Generating grub configuration file ... 111s Found linux image: /boot/vmlinuz-6.14.0-10-generic 111s Found initrd image: /boot/initrd.img-6.14.0-10-generic 111s Warning: os-prober will not be executed to detect other bootable partitions. 111s Systems on them will not be added to the GRUB boot configuration. 111s Check GRUB_DISABLE_OS_PROBER documentation entry. 111s Adding boot menu entry for UEFI Firmware Settings ... 111s done 111s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 111s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 113s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 113s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 113s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 113s Processing triggers for libc-bin (2.41-1ubuntu1) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 113s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 113s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 113s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 113s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 113s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 113s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 113s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 113s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 113s autopkgtest [21:09:49]: upgrading testbed (apt dist-upgrade and autopurge) 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 114s Starting 2 pkgProblemResolver with broken count: 0 114s Done 115s Entering ResolveByKeep 115s 115s Calculating upgrade... 115s The following packages will be upgraded: 115s libc-bin libc-dev-bin libc6 libc6-dev locales 115s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 10.5 MB of archives. 115s After this operation, 1024 B of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 115s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 115s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 116s Preconfiguring packages ... 116s Fetched 10.5 MB in 0s (56.9 MB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 116s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 116s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 116s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 116s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Setting up libc6:amd64 (2.41-1ubuntu2) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 117s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 117s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 117s Setting up libc-bin (2.41-1ubuntu2) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 117s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 117s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 117s Setting up locales (2.41-1ubuntu2) ... 118s Generating locales (this might take a while)... 119s en_US.UTF-8... done 119s Generation complete. 119s Setting up libc-dev-bin (2.41-1ubuntu2) ... 119s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 119s Processing triggers for man-db (2.13.0-1) ... 119s Processing triggers for systemd (257.3-1ubuntu3) ... 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Starting pkgProblemResolver with broken count: 0 121s Starting 2 pkgProblemResolver with broken count: 0 121s Done 121s Solving dependencies... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s autopkgtest [21:09:57]: rebooting testbed after setup commands that affected boot 125s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 137s autopkgtest [21:10:13]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 138s autopkgtest [21:10:14]: @@@@@@@@@@@@@@@@@@@@ apt-source parsnp 138s Get:1 http://ftpmaster.internal/ubuntu plucky/universe parsnp 2.0.6+dfsg-1ubuntu1 (dsc) [2221 B] 138s Get:2 http://ftpmaster.internal/ubuntu plucky/universe parsnp 2.0.6+dfsg-1ubuntu1 (tar) [142 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky/universe parsnp 2.0.6+dfsg-1ubuntu1 (diff) [10.5 kB] 139s gpgv: Signature made Thu Feb 20 04:03:51 2025 UTC 139s gpgv: using RSA key 5C7ABEA20F8630459CC8C8B5E27F2CF8458C2FA4 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./parsnp_2.0.6+dfsg-1ubuntu1.dsc: no acceptable signature found 139s autopkgtest [21:10:15]: testing package parsnp version 2.0.6+dfsg-1ubuntu1 139s autopkgtest [21:10:15]: build not needed 139s autopkgtest [21:10:15]: test run-unit-test: preparing testbed 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s Starting pkgProblemResolver with broken count: 0 140s Starting 2 pkgProblemResolver with broken count: 0 140s Done 140s The following NEW packages will be installed: 140s fasttree fontconfig-config fonts-dejavu-core fonts-dejavu-mono 140s fonts-urw-base35 harvest-tools libblas3 libcairo2 libcapnp-1.1.0 libdeflate0 140s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 140s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 140s liblcms2-2 liblerc4 libmuscle1 libopenjp2-7 libpixman-1-0 libprotobuf32t64 140s libraqm0 libsharpyuv0 libspoa7.0.0 libtiff6 libwebp7 libwebpdemux2 140s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 mummer parsnp phipack 140s python3-biopython python3-cairo python3-freetype python3-numpy 140s python3-numpy-dev python3-pil python3-pyspoa python3-reportlab 140s python3-rlpycairo python3-tqdm raxml sgml-base w3c-sgml-lib x11-common 140s xfonts-encodings xfonts-utils xml-core 140s 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 36.9 MB of archives. 140s After this operation, 119 MB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 140s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 140s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 140s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 140s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 140s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 140s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 140s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 140s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 140s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 140s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 140s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 140s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 141s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 141s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcapnp-1.1.0 amd64 1.1.0-2 [1533 kB] 141s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libprotobuf32t64 amd64 3.21.12-10build2 [959 kB] 141s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 harvest-tools amd64 1.3-8build6 [138 kB] 141s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 141s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 141s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 141s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 141s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 141s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 141s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 141s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 141s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 141s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 141s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 141s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 141s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 141s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 141s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 141s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmuscle1 amd64 3.7+4565-8 [276 kB] 141s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 141s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 141s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspoa7.0.0 amd64 4.1.4-2 [79.1 kB] 141s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 141s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 141s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 141s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 141s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 141s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 mummer amd64 3.23+dfsg-8 [685 kB] 141s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 141s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 141s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2build2 [124 kB] 141s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 141s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 141s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.3.1-1 [1137 kB] 141s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 141s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 141s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.85+dfsg-2build1 [1739 kB] 141s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyspoa amd64 0.2.1-2build1 [67.0 kB] 141s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB] 141s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 fasttree amd64 2.1.11-2 [174 kB] 141s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 phipack amd64 0.0.20160614-5 [55.2 kB] 141s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 raxml amd64 8.2.13+dfsg-2 [1670 kB] 141s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 parsnp amd64 2.0.6+dfsg-1ubuntu1 [218 kB] 141s Fetched 36.9 MB in 1s (46.7 MB/s) 141s Selecting previously unselected package python3-numpy-dev:amd64. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 141s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 141s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 142s Selecting previously unselected package libblas3:amd64. 142s Preparing to unpack .../01-libblas3_3.12.1-2_amd64.deb ... 142s Unpacking libblas3:amd64 (3.12.1-2) ... 142s Selecting previously unselected package libgfortran5:amd64. 142s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 142s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 142s Selecting previously unselected package liblapack3:amd64. 142s Preparing to unpack .../03-liblapack3_3.12.1-2_amd64.deb ... 142s Unpacking liblapack3:amd64 (3.12.1-2) ... 142s Selecting previously unselected package python3-numpy. 142s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 142s Unpacking python3-numpy (1:2.2.3+ds-5) ... 142s Selecting previously unselected package sgml-base. 142s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 142s Unpacking sgml-base (1.31) ... 142s Selecting previously unselected package fonts-dejavu-mono. 142s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-mono (2.37-8) ... 142s Selecting previously unselected package fonts-dejavu-core. 142s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-core (2.37-8) ... 142s Selecting previously unselected package libfontenc1:amd64. 142s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 142s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 142s Selecting previously unselected package x11-common. 142s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu3_all.deb ... 142s Unpacking x11-common (1:7.7+23ubuntu3) ... 142s Selecting previously unselected package xfonts-encodings. 142s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 142s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 142s Selecting previously unselected package xfonts-utils. 142s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_amd64.deb ... 142s Unpacking xfonts-utils (1:7.7+7) ... 142s Selecting previously unselected package fonts-urw-base35. 142s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 142s Unpacking fonts-urw-base35 (20200910-8) ... 142s Selecting previously unselected package fontconfig-config. 142s Preparing to unpack .../13-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 143s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 143s Selecting previously unselected package libcapnp-1.1.0:amd64. 143s Preparing to unpack .../14-libcapnp-1.1.0_1.1.0-2_amd64.deb ... 143s Unpacking libcapnp-1.1.0:amd64 (1.1.0-2) ... 143s Selecting previously unselected package libprotobuf32t64:amd64. 143s Preparing to unpack .../15-libprotobuf32t64_3.21.12-10build2_amd64.deb ... 143s Unpacking libprotobuf32t64:amd64 (3.21.12-10build2) ... 143s Selecting previously unselected package harvest-tools. 143s Preparing to unpack .../16-harvest-tools_1.3-8build6_amd64.deb ... 143s Unpacking harvest-tools (1.3-8build6) ... 143s Selecting previously unselected package libfontconfig1:amd64. 143s Preparing to unpack .../17-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 143s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 143s Selecting previously unselected package libpixman-1-0:amd64. 143s Preparing to unpack .../18-libpixman-1-0_0.44.0-3_amd64.deb ... 143s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 143s Selecting previously unselected package libxcb-render0:amd64. 143s Preparing to unpack .../19-libxcb-render0_1.17.0-2_amd64.deb ... 143s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 143s Selecting previously unselected package libxcb-shm0:amd64. 143s Preparing to unpack .../20-libxcb-shm0_1.17.0-2_amd64.deb ... 143s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 143s Selecting previously unselected package libxrender1:amd64. 143s Preparing to unpack .../21-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 143s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 143s Selecting previously unselected package libcairo2:amd64. 143s Preparing to unpack .../22-libcairo2_1.18.2-2_amd64.deb ... 143s Unpacking libcairo2:amd64 (1.18.2-2) ... 143s Selecting previously unselected package libdeflate0:amd64. 143s Preparing to unpack .../23-libdeflate0_1.23-1_amd64.deb ... 143s Unpacking libdeflate0:amd64 (1.23-1) ... 143s Selecting previously unselected package libgomp1:amd64. 143s Preparing to unpack .../24-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 143s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 143s Selecting previously unselected package libgraphite2-3:amd64. 143s Preparing to unpack .../25-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 143s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 143s Selecting previously unselected package libharfbuzz0b:amd64. 143s Preparing to unpack .../26-libharfbuzz0b_10.2.0-1_amd64.deb ... 143s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 143s Selecting previously unselected package libimagequant0:amd64. 143s Preparing to unpack .../27-libimagequant0_2.18.0-1build1_amd64.deb ... 143s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 143s Selecting previously unselected package libjpeg-turbo8:amd64. 143s Preparing to unpack .../28-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 143s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 143s Selecting previously unselected package libjpeg8:amd64. 143s Preparing to unpack .../29-libjpeg8_8c-2ubuntu11_amd64.deb ... 143s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 143s Selecting previously unselected package liblcms2-2:amd64. 143s Preparing to unpack .../30-liblcms2-2_2.16-2_amd64.deb ... 143s Unpacking liblcms2-2:amd64 (2.16-2) ... 143s Selecting previously unselected package liblerc4:amd64. 143s Preparing to unpack .../31-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 143s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 143s Selecting previously unselected package libmuscle1. 143s Preparing to unpack .../32-libmuscle1_3.7+4565-8_amd64.deb ... 143s Unpacking libmuscle1 (3.7+4565-8) ... 143s Selecting previously unselected package libraqm0:amd64. 143s Preparing to unpack .../33-libraqm0_0.10.2-1_amd64.deb ... 143s Unpacking libraqm0:amd64 (0.10.2-1) ... 143s Selecting previously unselected package libsharpyuv0:amd64. 143s Preparing to unpack .../34-libsharpyuv0_1.5.0-0.1_amd64.deb ... 143s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 143s Selecting previously unselected package libspoa7.0.0:amd64. 143s Preparing to unpack .../35-libspoa7.0.0_4.1.4-2_amd64.deb ... 143s Unpacking libspoa7.0.0:amd64 (4.1.4-2) ... 143s Selecting previously unselected package libjbig0:amd64. 143s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 143s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 143s Selecting previously unselected package libwebp7:amd64. 143s Preparing to unpack .../37-libwebp7_1.5.0-0.1_amd64.deb ... 143s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 143s Selecting previously unselected package libtiff6:amd64. 143s Preparing to unpack .../38-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 143s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 143s Selecting previously unselected package libwebpdemux2:amd64. 143s Preparing to unpack .../39-libwebpdemux2_1.5.0-0.1_amd64.deb ... 143s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 143s Selecting previously unselected package libwebpmux3:amd64. 143s Preparing to unpack .../40-libwebpmux3_1.5.0-0.1_amd64.deb ... 143s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 143s Selecting previously unselected package mummer. 143s Preparing to unpack .../41-mummer_3.23+dfsg-8_amd64.deb ... 143s Unpacking mummer (3.23+dfsg-8) ... 143s Selecting previously unselected package libopenjp2-7:amd64. 143s Preparing to unpack .../42-libopenjp2-7_2.5.3-2_amd64.deb ... 143s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 143s Selecting previously unselected package python3-pil:amd64. 143s Preparing to unpack .../43-python3-pil_11.1.0-5build1_amd64.deb ... 143s Unpacking python3-pil:amd64 (11.1.0-5build1) ... 143s Selecting previously unselected package python3-cairo. 144s Preparing to unpack .../44-python3-cairo_1.26.1-2build2_amd64.deb ... 144s Unpacking python3-cairo (1.26.1-2build2) ... 144s Selecting previously unselected package python3-freetype. 144s Preparing to unpack .../45-python3-freetype_2.5.1-1_all.deb ... 144s Unpacking python3-freetype (2.5.1-1) ... 144s Selecting previously unselected package python3-rlpycairo. 144s Preparing to unpack .../46-python3-rlpycairo_0.3.0-3_all.deb ... 144s Unpacking python3-rlpycairo (0.3.0-3) ... 144s Selecting previously unselected package python3-reportlab. 144s Preparing to unpack .../47-python3-reportlab_4.3.1-1_all.deb ... 144s Unpacking python3-reportlab (4.3.1-1) ... 144s Selecting previously unselected package xml-core. 144s Preparing to unpack .../48-xml-core_0.19_all.deb ... 144s Unpacking xml-core (0.19) ... 144s Selecting previously unselected package w3c-sgml-lib. 144s Preparing to unpack .../49-w3c-sgml-lib_1.3-3_all.deb ... 144s Unpacking w3c-sgml-lib (1.3-3) ... 144s Selecting previously unselected package python3-biopython. 144s Preparing to unpack .../50-python3-biopython_1.85+dfsg-2build1_amd64.deb ... 144s Unpacking python3-biopython (1.85+dfsg-2build1) ... 144s Selecting previously unselected package python3-pyspoa. 144s Preparing to unpack .../51-python3-pyspoa_0.2.1-2build1_amd64.deb ... 144s Unpacking python3-pyspoa (0.2.1-2build1) ... 144s Selecting previously unselected package python3-tqdm. 144s Preparing to unpack .../52-python3-tqdm_4.67.1-2_all.deb ... 144s Unpacking python3-tqdm (4.67.1-2) ... 144s Selecting previously unselected package fasttree. 144s Preparing to unpack .../53-fasttree_2.1.11-2_amd64.deb ... 144s Unpacking fasttree (2.1.11-2) ... 144s Selecting previously unselected package phipack. 144s Preparing to unpack .../54-phipack_0.0.20160614-5_amd64.deb ... 144s Unpacking phipack (0.0.20160614-5) ... 144s Selecting previously unselected package raxml. 144s Preparing to unpack .../55-raxml_8.2.13+dfsg-2_amd64.deb ... 144s Unpacking raxml (8.2.13+dfsg-2) ... 144s Selecting previously unselected package parsnp. 144s Preparing to unpack .../56-parsnp_2.0.6+dfsg-1ubuntu1_amd64.deb ... 144s Unpacking parsnp (2.0.6+dfsg-1ubuntu1) ... 144s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 144s Setting up liblcms2-2:amd64 (2.16-2) ... 144s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 144s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 144s Setting up libprotobuf32t64:amd64 (3.21.12-10build2) ... 144s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 144s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 144s Setting up libxcb-render0:amd64 (1.17.0-2) ... 144s Setting up python3-tqdm (4.67.1-2) ... 144s Setting up x11-common (1:7.7+23ubuntu3) ... 145s Setting up libdeflate0:amd64 (1.23-1) ... 145s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 145s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ... 145s Setting up python3-freetype (2.5.1-1) ... 145s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 145s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 145s Setting up libblas3:amd64 (3.12.1-2) ... 145s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 145s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 145s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 145s Setting up fonts-dejavu-mono (2.37-8) ... 145s Setting up libspoa7.0.0:amd64 (4.1.4-2) ... 145s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 145s Setting up fonts-dejavu-core (2.37-8) ... 145s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 145s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ... 145s Setting up libwebp7:amd64 (1.5.0-0.1) ... 145s Setting up mummer (3.23+dfsg-8) ... 145s Setting up libopenjp2-7:amd64 (2.5.3-2) ... 145s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 145s Setting up phipack (0.0.20160614-5) ... 145s Setting up fasttree (2.1.11-2) ... 145s Setting up sgml-base (1.31) ... 145s Setting up libcapnp-1.1.0:amd64 (1.1.0-2) ... 145s Setting up harvest-tools (1.3-8build6) ... 145s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 145s Setting up raxml (8.2.13+dfsg-2) ... 145s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 145s Setting up python3-pyspoa (0.2.1-2build1) ... 145s Setting up liblapack3:amd64 (3.12.1-2) ... 145s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 145s Setting up libmuscle1 (3.7+4565-8) ... 145s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 145s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 145s Setting up xfonts-utils (1:7.7+7) ... 145s Setting up libraqm0:amd64 (0.10.2-1) ... 145s Setting up python3-numpy (1:2.2.3+ds-5) ... 147s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 147s Setting up xml-core (0.19) ... 147s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 147s Setting up fonts-urw-base35 (20200910-8) ... 147s Setting up libcairo2:amd64 (1.18.2-2) ... 147s Setting up python3-pil:amd64 (11.1.0-5build1) ... 147s Setting up python3-cairo (1.26.1-2build2) ... 147s Setting up python3-rlpycairo (0.3.0-3) ... 148s Setting up python3-reportlab (4.3.1-1) ... 148s Processing triggers for libc-bin (2.41-1ubuntu2) ... 148s Processing triggers for man-db (2.13.0-1) ... 149s Processing triggers for sgml-base (1.31) ... 149s Setting up w3c-sgml-lib (1.3-3) ... 175s Setting up python3-biopython (1.85+dfsg-2build1) ... 176s Setting up parsnp (2.0.6+dfsg-1ubuntu1) ... 176s autopkgtest [21:10:52]: test run-unit-test: [----------------------- 177s Test 1: With GenBank Annotations 177s 21:10:53 - INFO - |--Parsnp 2.0.6--| 177s 177s 21:10:53 - INFO - 177s ********************************************************************************** 177s SETTINGS: 177s |-refgenome: mers_virus/ref/England1.gbk 177s |-genomes: 177s mers_virus/genomes/Riyadh_9_2013.fna 177s mers_virus/genomes/Riyadh_2_2012.fna 177s ...42 more file(s)... 177s mers_virus/genomes/England-Qatar_2012.fna 177s mers_virus/genomes/Al-Hasa_4_2013.fna 177s |-aligner: muscle 177s |-outdir: /tmp/autopkgtest.XrRAwg/autopkgtest_tmp/P_2025_03_15_211053362909 177s |-OS: Linux 177s |-threads: 1 177s ********************************************************************************** 177s 177s 21:10:53 - INFO - <> 177s 21:10:53 - INFO - Too few genomes to run partitions of size >50. Running all genomes at once. 177s 21:10:53 - INFO - Running Parsnp multi-MUM search and libMUSCLE aligner... 177s 21:10:53 - INFO - Reconstructing core genome phylogeny... 180s 21:10:56 - INFO - Aligned 47 genomes in 2.81 seconds 180s 21:10:56 - INFO - Parsnp finished! All output available in /tmp/autopkgtest.XrRAwg/autopkgtest_tmp/P_2025_03_15_211053362909 180s Passed 180s 180s Test 2: Without GenBank Annotations 180s 21:10:56 - INFO - |--Parsnp 2.0.6--| 180s 180s 21:10:56 - INFO - 180s ********************************************************************************** 180s SETTINGS: 180s |-refgenome: mers_virus/ref/England1.fna 180s |-genomes: 180s mers_virus/genomes/Riyadh_9_2013.fna 180s mers_virus/genomes/Riyadh_2_2012.fna 180s ...42 more file(s)... 180s mers_virus/genomes/England-Qatar_2012.fna 180s mers_virus/genomes/Al-Hasa_4_2013.fna 180s |-aligner: muscle 180s |-outdir: /tmp/autopkgtest.XrRAwg/autopkgtest_tmp/P_2025_03_15_211056386210 180s |-OS: Linux 180s |-threads: 1 180s ********************************************************************************** 180s 180s 21:10:56 - INFO - <> 180s 21:10:56 - INFO - No genbank file provided for reference annotations, skipping.. 180s 21:10:56 - INFO - Too few genomes to run partitions of size >50. Running all genomes at once. 180s 21:10:56 - INFO - Running Parsnp multi-MUM search and libMUSCLE aligner... 180s 21:10:56 - INFO - Reconstructing core genome phylogeny... 183s 21:10:59 - INFO - Aligned 47 genomes in 2.80 seconds 183s 21:10:59 - INFO - Parsnp finished! All output available in /tmp/autopkgtest.XrRAwg/autopkgtest_tmp/P_2025_03_15_211056386210 183s Passed 183s 183s autopkgtest [21:10:59]: test run-unit-test: -----------------------] 183s autopkgtest [21:10:59]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 183s run-unit-test PASS 183s autopkgtest [21:10:59]: @@@@@@@@@@@@@@@@@@@@ summary 183s run-unit-test PASS 203s nova [W] Skipping flock for amd64 203s Creating nova instance adt-plucky-amd64-parsnp-20250315-210756-juju-7f2275-prod-proposed-migration-environment-2-fc8fb122-c6aa-414c-9661-7599f02a1fdd from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 203s nova [W] Timed out waiting for 417bffe8-a07e-4f6b-9513-171c816d914f to get deleted.