0s autopkgtest [09:08:38]: starting date and time: 2024-11-13 09:08:38+0000 0s autopkgtest [09:08:38]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [09:08:38]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.delmej3i/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade opentsne --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-2.secgroup --name adt-plucky-amd64-opentsne-20241113-090838-juju-7f2275-prod-proposed-migration-environment-2-a8e8f084-a4ab-4818-bcb2-e9cfa664be9a --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 63s autopkgtest [09:09:41]: testbed dpkg architecture: amd64 64s autopkgtest [09:09:42]: testbed apt version: 2.9.8 64s autopkgtest [09:09:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 64s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 64s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 64s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 64s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 64s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 64s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 64s Fetched 2173 kB in 0s (5181 kB/s) 64s Reading package lists... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade... 67s The following NEW packages will be installed: 67s python3.13-gdbm 67s The following packages will be upgraded: 67s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 67s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 253 kB of archives. 67s After this operation, 147 kB of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 67s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 67s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 67s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 67s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 67s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 67s Fetched 253 kB in 0s (4608 kB/s) 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 67s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 67s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 67s Setting up python3-minimal (3.12.7-1) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 67s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 67s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 68s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 68s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 68s Selecting previously unselected package python3.13-gdbm. 68s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 68s Unpacking python3.13-gdbm (3.13.0-2) ... 68s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 68s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 68s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 68s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 68s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 68s Setting up python3.13-gdbm (3.13.0-2) ... 68s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 68s Setting up python3 (3.12.7-1) ... 68s Setting up python3-gdbm:amd64 (3.12.7-1) ... 68s Processing triggers for man-db (2.12.1-3) ... 69s Processing triggers for libc-bin (2.40-1ubuntu3) ... 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 70s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 70s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 70s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 71s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s Calculating upgrade... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s autopkgtest [09:09:52]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 74s autopkgtest [09:09:52]: @@@@@@@@@@@@@@@@@@@@ apt-source opentsne 77s Get:1 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu1 (dsc) [2377 B] 77s Get:2 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu1 (tar) [22.1 MB] 77s Get:3 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu1 (diff) [5320 B] 77s gpgv: Signature made Mon Sep 30 12:06:08 2024 UTC 77s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 77s gpgv: Can't check signature: No public key 77s dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-1ubuntu1.dsc: no acceptable signature found 77s autopkgtest [09:09:55]: testing package opentsne version 1.0.2-1ubuntu1 78s autopkgtest [09:09:56]: build not needed 78s autopkgtest [09:09:56]: test python: preparing testbed 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Starting pkgProblemResolver with broken count: 0 79s Starting 2 pkgProblemResolver with broken count: 0 79s Done 80s The following additional packages will be installed: 80s libblas3 libfftw3-double3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 80s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 80s python3-iniconfig python3-joblib python3-numpy python3-opentsne 80s python3-packaging python3-pluggy python3-pytest python3-pytest-runner 80s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 80s python3.13 python3.13-minimal 80s Suggested packages: 80s libfftw3-bin libfftw3-dev python-joblib-doc gcc gfortran python-numpy-doc 80s python3-dev python-scipy-doc python3-dap python-sklearn-doc ipython3 80s python3.13-venv python3.13-doc binfmt-support 80s Recommended packages: 80s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 80s python3-matplotlib 80s The following NEW packages will be installed: 80s autopkgtest-satdep libblas3 libfftw3-double3 libgfortran5 libgomp1 80s liblapack3 liblbfgsb0 libpython3.13-minimal libpython3.13-stdlib python3-all 80s python3-decorator python3-iniconfig python3-joblib python3-numpy 80s python3-opentsne python3-packaging python3-pluggy python3-pytest 80s python3-pytest-runner python3-scipy python3-sklearn python3-sklearn-lib 80s python3-threadpoolctl python3.13 python3.13-minimal 80s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 40.5 MB/40.5 MB of archives. 80s After this operation, 174 MB of additional disk space will be used. 80s Get:1 /tmp/autopkgtest.0kHwGH/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [732 B] 80s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 80s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 80s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 80s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 80s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu4 [839 kB] 80s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 80s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 80s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 80s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 80s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 81s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 81s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 81s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 81s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 81s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 81s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 81s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 81s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3920 kB] 81s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 81s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-opentsne amd64 1.0.2-1ubuntu1 [388 kB] 82s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 82s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 82s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 82s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-runner all 2.11.1-4 [7450 B] 82s Fetched 40.5 MB in 2s (19.0 MB/s) 82s Selecting previously unselected package libpython3.13-minimal:amd64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 82s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 82s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 82s Selecting previously unselected package python3.13-minimal. 82s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 82s Unpacking python3.13-minimal (3.13.0-2) ... 83s Selecting previously unselected package libblas3:amd64. 83s Preparing to unpack .../02-libblas3_3.12.0-3build2_amd64.deb ... 83s Unpacking libblas3:amd64 (3.12.0-3build2) ... 83s Selecting previously unselected package libgomp1:amd64. 83s Preparing to unpack .../03-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package libfftw3-double3:amd64. 83s Preparing to unpack .../04-libfftw3-double3_3.3.10-1ubuntu4_amd64.deb ... 83s Unpacking libfftw3-double3:amd64 (3.3.10-1ubuntu4) ... 83s Selecting previously unselected package libgfortran5:amd64. 83s Preparing to unpack .../05-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 83s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 83s Selecting previously unselected package liblapack3:amd64. 83s Preparing to unpack .../06-liblapack3_3.12.0-3build2_amd64.deb ... 83s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 83s Selecting previously unselected package liblbfgsb0:amd64. 83s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 83s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 83s Selecting previously unselected package libpython3.13-stdlib:amd64. 83s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 83s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 83s Selecting previously unselected package python3.13. 83s Preparing to unpack .../09-python3.13_3.13.0-2_amd64.deb ... 83s Unpacking python3.13 (3.13.0-2) ... 83s Selecting previously unselected package python3-all. 83s Preparing to unpack .../10-python3-all_3.12.7-1_amd64.deb ... 83s Unpacking python3-all (3.12.7-1) ... 83s Selecting previously unselected package python3-decorator. 83s Preparing to unpack .../11-python3-decorator_5.1.1-5_all.deb ... 83s Unpacking python3-decorator (5.1.1-5) ... 83s Selecting previously unselected package python3-iniconfig. 83s Preparing to unpack .../12-python3-iniconfig_1.1.1-2_all.deb ... 83s Unpacking python3-iniconfig (1.1.1-2) ... 83s Selecting previously unselected package python3-joblib. 83s Preparing to unpack .../13-python3-joblib_1.3.2-5_all.deb ... 83s Unpacking python3-joblib (1.3.2-5) ... 83s Selecting previously unselected package python3-numpy. 83s Preparing to unpack .../14-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 83s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 83s Selecting previously unselected package python3-scipy. 83s Preparing to unpack .../15-python3-scipy_1.13.1-5_amd64.deb ... 83s Unpacking python3-scipy (1.13.1-5) ... 84s Selecting previously unselected package python3-threadpoolctl. 84s Preparing to unpack .../16-python3-threadpoolctl_3.1.0-1_all.deb ... 84s Unpacking python3-threadpoolctl (3.1.0-1) ... 84s Selecting previously unselected package python3-sklearn-lib:amd64. 84s Preparing to unpack .../17-python3-sklearn-lib_1.4.2+dfsg-6_amd64.deb ... 84s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 84s Selecting previously unselected package python3-sklearn. 84s Preparing to unpack .../18-python3-sklearn_1.4.2+dfsg-6_all.deb ... 84s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 84s Selecting previously unselected package python3-opentsne. 84s Preparing to unpack .../19-python3-opentsne_1.0.2-1ubuntu1_amd64.deb ... 84s Unpacking python3-opentsne (1.0.2-1ubuntu1) ... 84s Selecting previously unselected package python3-packaging. 84s Preparing to unpack .../20-python3-packaging_24.1-1_all.deb ... 84s Unpacking python3-packaging (24.1-1) ... 84s Selecting previously unselected package python3-pluggy. 84s Preparing to unpack .../21-python3-pluggy_1.5.0-1_all.deb ... 84s Unpacking python3-pluggy (1.5.0-1) ... 84s Selecting previously unselected package python3-pytest. 84s Preparing to unpack .../22-python3-pytest_8.3.3-1_all.deb ... 84s Unpacking python3-pytest (8.3.3-1) ... 84s Selecting previously unselected package python3-pytest-runner. 84s Preparing to unpack .../23-python3-pytest-runner_2.11.1-4_all.deb ... 84s Unpacking python3-pytest-runner (2.11.1-4) ... 84s Selecting previously unselected package autopkgtest-satdep. 84s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 84s Unpacking autopkgtest-satdep (0) ... 84s Setting up python3-iniconfig (1.1.1-2) ... 85s Setting up python3-joblib (1.3.2-5) ... 85s Setting up python3-threadpoolctl (3.1.0-1) ... 85s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 85s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 85s Setting up python3-decorator (5.1.1-5) ... 85s Setting up libblas3:amd64 (3.12.0-3build2) ... 85s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 85s Setting up python3-packaging (24.1-1) ... 85s Setting up libfftw3-double3:amd64 (3.3.10-1ubuntu4) ... 85s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 85s Setting up python3-pluggy (1.5.0-1) ... 86s Setting up python3.13-minimal (3.13.0-2) ... 86s Setting up python3-pytest-runner (2.11.1-4) ... 87s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 87s Setting up liblapack3:amd64 (3.12.0-3build2) ... 87s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 87s Setting up python3.13 (3.13.0-2) ... 88s Setting up python3-pytest (8.3.3-1) ... 88s Setting up python3-all (3.12.7-1) ... 88s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 92s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 92s Setting up python3-scipy (1.13.1-5) ... 98s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 98s Setting up python3-sklearn (1.4.2+dfsg-6) ... 102s Setting up python3-opentsne (1.0.2-1ubuntu1) ... 102s Setting up autopkgtest-satdep (0) ... 102s Processing triggers for systemd (256.5-2ubuntu4) ... 102s Processing triggers for man-db (2.12.1-3) ... 102s Processing triggers for libc-bin (2.40-1ubuntu3) ... 105s (Reading database ... 79883 files and directories currently installed.) 105s Removing autopkgtest-satdep (0) ... 105s autopkgtest [09:10:23]: test python: [----------------------- 106s + cp -rf tests /tmp/autopkgtest.0kHwGH/autopkgtest_tmp 106s + py3versions --supported 106s + cd /tmp/autopkgtest.0kHwGH/autopkgtest_tmp 106s + echo Testing with python3.13: 106s + python3.13 -m pytest 106s Testing with python3.13: 106s ============================= test session starts ============================== 106s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 106s rootdir: /tmp/autopkgtest.0kHwGH/autopkgtest_tmp 106s plugins: typeguard-4.4.1 106s collected 0 items / 7 errors 106s 106s ==================================== ERRORS ==================================== 106s __________________ ERROR collecting tests/test_affinities.py ___________________ 106s ImportError while importing test module '/tmp/autopkgtest.0kHwGH/autopkgtest_tmp/tests/test_affinities.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 106s from . import multiarray 106s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 106s from . import overrides 106s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 106s from numpy.core._multiarray_umath import ( 106s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 106s 106s During handling of the above exception, another exception occurred: 106s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 106s from numpy.__config__ import show as show_config 106s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 106s from numpy.core._multiarray_umath import ( 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 106s raise ImportError(msg) 106s E ImportError: 106s E 106s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 106s E 106s E Importing the numpy C-extensions failed. This error can happen for 106s E many reasons, often due to issues with your setup or how NumPy was 106s E installed. 106s E 106s E We have compiled some common reasons and troubleshooting tips at: 106s E 106s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 106s E 106s E Please note and check the following: 106s E 106s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 106s E * The NumPy version is: "1.26.4" 106s E 106s E and make sure that they are the versions you expect. 106s E Please carefully study the documentation linked above for further help. 106s E 106s E Original error was: No module named 'numpy.core._multiarray_umath' 106s 106s The above exception was the direct cause of the following exception: 106s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s tests/test_affinities.py:5: in 106s import numpy as np 106s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 106s raise ImportError(msg) from e 106s E ImportError: Error importing numpy: you should not try to import numpy from 106s E its source directory; please exit the numpy source tree, and relaunch 106s E your python interpreter from there. 106s __________________ ERROR collecting tests/test_correctness.py __________________ 106s ImportError while importing test module '/tmp/autopkgtest.0kHwGH/autopkgtest_tmp/tests/test_correctness.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 106s from . import multiarray 106s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 106s from . import overrides 106s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 106s from numpy.core._multiarray_umath import ( 106s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 106s 106s During handling of the above exception, another exception occurred: 106s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 106s from numpy.__config__ import show as show_config 106s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 106s from numpy.core._multiarray_umath import ( 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 106s raise ImportError(msg) 106s E ImportError: 106s E 106s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 106s E 106s E Importing the numpy C-extensions failed. This error can happen for 106s E many reasons, often due to issues with your setup or how NumPy was 106s E installed. 106s E 106s E We have compiled some common reasons and troubleshooting tips at: 106s E 106s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 106s E 106s E Please note and check the following: 106s E 106s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 106s E * The NumPy version is: "1.26.4" 106s E 106s E and make sure that they are the versions you expect. 106s E Please carefully study the documentation linked above for further help. 106s E 106s E Original error was: No module named 'numpy.core._multiarray_umath' 106s 106s The above exception was the direct cause of the following exception: 106s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s tests/test_correctness.py:5: in 106s from scipy.spatial.distance import pdist, squareform 106s /usr/lib/python3/dist-packages/scipy/__init__.py:47: in 106s from numpy import __version__ as __numpy_version__ 106s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 106s raise ImportError(msg) from e 106s E ImportError: Error importing numpy: you should not try to import numpy from 106s E its source directory; please exit the numpy source tree, and relaunch 106s E your python interpreter from there. 106s _______________ ERROR collecting tests/test_different_usages.py ________________ 106s ImportError while importing test module '/tmp/autopkgtest.0kHwGH/autopkgtest_tmp/tests/test_different_usages.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 106s from . import multiarray 106s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 106s from . import overrides 106s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 106s from numpy.core._multiarray_umath import ( 106s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 106s 106s During handling of the above exception, another exception occurred: 106s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 106s from numpy.__config__ import show as show_config 106s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 106s from numpy.core._multiarray_umath import ( 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 106s raise ImportError(msg) 106s E ImportError: 106s E 106s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 106s E 106s E Importing the numpy C-extensions failed. This error can happen for 106s E many reasons, often due to issues with your setup or how NumPy was 106s E installed. 106s E 106s E We have compiled some common reasons and troubleshooting tips at: 106s E 106s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 106s E 106s E Please note and check the following: 106s E 106s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 106s E * The NumPy version is: "1.26.4" 106s E 106s E and make sure that they are the versions you expect. 106s E Please carefully study the documentation linked above for further help. 106s E 106s E Original error was: No module named 'numpy.core._multiarray_umath' 106s 106s The above exception was the direct cause of the following exception: 106s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s tests/test_different_usages.py:4: in 106s import numpy as np 106s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 106s raise ImportError(msg) from e 106s E ImportError: Error importing numpy: you should not try to import numpy from 106s E its source directory; please exit the numpy source tree, and relaunch 106s E your python interpreter from there. 106s _______________ ERROR collecting tests/test_nearest_neighbors.py _______________ 106s ImportError while importing test module '/tmp/autopkgtest.0kHwGH/autopkgtest_tmp/tests/test_nearest_neighbors.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 106s from . import multiarray 106s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 106s from . import overrides 106s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 106s from numpy.core._multiarray_umath import ( 106s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 106s 106s During handling of the above exception, another exception occurred: 106s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 106s from numpy.__config__ import show as show_config 106s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 106s from numpy.core._multiarray_umath import ( 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 106s raise ImportError(msg) 106s E ImportError: 106s E 106s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 106s E 106s E Importing the numpy C-extensions failed. This error can happen for 106s E many reasons, often due to issues with your setup or how NumPy was 106s E installed. 106s E 106s E We have compiled some common reasons and troubleshooting tips at: 106s E 106s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 106s E 106s E Please note and check the following: 106s E 106s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 106s E * The NumPy version is: "1.26.4" 106s E 106s E and make sure that they are the versions you expect. 106s E Please carefully study the documentation linked above for further help. 106s E 106s E Original error was: No module named 'numpy.core._multiarray_umath' 106s 106s The above exception was the direct cause of the following exception: 106s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s tests/test_nearest_neighbors.py:8: in 106s import numpy as np 106s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 106s raise ImportError(msg) from e 106s E ImportError: Error importing numpy: you should not try to import numpy from 106s E its source directory; please exit the numpy source tree, and relaunch 106s E your python interpreter from there. 106s ________________ ERROR collecting tests/test_sklearn_wrapper.py ________________ 106s ImportError while importing test module '/tmp/autopkgtest.0kHwGH/autopkgtest_tmp/tests/test_sklearn_wrapper.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 106s from . import multiarray 106s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 106s from . import overrides 106s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 106s from numpy.core._multiarray_umath import ( 106s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 106s 106s During handling of the above exception, another exception occurred: 106s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 106s from numpy.__config__ import show as show_config 106s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 106s from numpy.core._multiarray_umath import ( 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 106s raise ImportError(msg) 106s E ImportError: 106s E 106s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 106s E 106s E Importing the numpy C-extensions failed. This error can happen for 106s E many reasons, often due to issues with your setup or how NumPy was 106s E installed. 106s E 106s E We have compiled some common reasons and troubleshooting tips at: 106s E 106s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 106s E 106s E Please note and check the following: 106s E 106s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 106s E * The NumPy version is: "1.26.4" 106s E 106s E and make sure that they are the versions you expect. 106s E Please carefully study the documentation linked above for further help. 106s E 106s E Original error was: No module named 'numpy.core._multiarray_umath' 106s 106s The above exception was the direct cause of the following exception: 106s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s tests/test_sklearn_wrapper.py:2: in 106s import numpy as np 106s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 106s raise ImportError(msg) from e 106s E ImportError: Error importing numpy: you should not try to import numpy from 106s E its source directory; please exit the numpy source tree, and relaunch 106s E your python interpreter from there. 106s _____________________ ERROR collecting tests/test_tsne.py ______________________ 106s ImportError while importing test module '/tmp/autopkgtest.0kHwGH/autopkgtest_tmp/tests/test_tsne.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 106s from . import multiarray 106s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 106s from . import overrides 106s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 106s from numpy.core._multiarray_umath import ( 106s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 106s 106s During handling of the above exception, another exception occurred: 106s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 106s from numpy.__config__ import show as show_config 106s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 106s from numpy.core._multiarray_umath import ( 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 106s raise ImportError(msg) 106s E ImportError: 106s E 106s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 106s E 106s E Importing the numpy C-extensions failed. This error can happen for 106s E many reasons, often due to issues with your setup or how NumPy was 106s E installed. 106s E 106s E We have compiled some common reasons and troubleshooting tips at: 106s E 106s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 106s E 106s E Please note and check the following: 106s E 106s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 106s E * The NumPy version is: "1.26.4" 106s E 106s E and make sure that they are the versions you expect. 106s E Please carefully study the documentation linked above for further help. 106s E 106s E Original error was: No module named 'numpy.core._multiarray_umath' 106s 106s The above exception was the direct cause of the following exception: 106s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s tests/test_tsne.py:9: in 106s import numpy as np 106s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 106s raise ImportError(msg) from e 106s E ImportError: Error importing numpy: you should not try to import numpy from 106s E its source directory; please exit the numpy source tree, and relaunch 106s E your python interpreter from there. 106s _____________________ ERROR collecting tests/test_utils.py _____________________ 106s ImportError while importing test module '/tmp/autopkgtest.0kHwGH/autopkgtest_tmp/tests/test_utils.py'. 106s Hint: make sure your test modules/packages have valid Python names. 106s Traceback: 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 106s from . import multiarray 106s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 106s from . import overrides 106s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 106s from numpy.core._multiarray_umath import ( 106s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 106s 106s During handling of the above exception, another exception occurred: 106s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 106s from numpy.__config__ import show as show_config 106s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 106s from numpy.core._multiarray_umath import ( 106s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 106s raise ImportError(msg) 106s E ImportError: 106s E 106s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 106s E 106s E Importing the numpy C-extensions failed. This error can happen for 106s E many reasons, often due to issues with your setup or how NumPy was 106s E installed. 106s E 106s E We have compiled some common reasons and troubleshooting tips at: 106s E 106s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 106s E 106s E Please note and check the following: 106s E 106s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 106s E * The NumPy version is: "1.26.4" 106s E 106s E and make sure that they are the versions you expect. 106s E Please carefully study the documentation linked above for further help. 106s E 106s E Original error was: No module named 'numpy.core._multiarray_umath' 106s 106s The above exception was the direct cause of the following exception: 106s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 106s return _bootstrap._gcd_import(name[level:], package, level) 106s tests/test_utils.py:2: in 106s import numpy as np 106s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 106s raise ImportError(msg) from e 106s E ImportError: Error importing numpy: you should not try to import numpy from 106s E its source directory; please exit the numpy source tree, and relaunch 106s E your python interpreter from there. 106s =========================== short test summary info ============================ 106s ERROR tests/test_affinities.py 106s ERROR tests/test_correctness.py 106s ERROR tests/test_different_usages.py 106s ERROR tests/test_nearest_neighbors.py 106s ERROR tests/test_sklearn_wrapper.py 106s ERROR tests/test_tsne.py 106s ERROR tests/test_utils.py 106s !!!!!!!!!!!!!!!!!!! Interrupted: 7 errors during collection !!!!!!!!!!!!!!!!!!!! 106s ============================== 7 errors in 0.32s =============================== 107s autopkgtest [09:10:25]: test python: -----------------------] 107s autopkgtest [09:10:25]: test python: - - - - - - - - - - results - - - - - - - - - - 107s python FAIL non-zero exit status 2 107s autopkgtest [09:10:25]: @@@@@@@@@@@@@@@@@@@@ summary 107s python FAIL non-zero exit status 2 118s virt: nova [W] Skipping flock for amd64 118s virt: Creating nova instance adt-plucky-amd64-opentsne-20241113-090838-juju-7f2275-prod-proposed-migration-environment-2-a8e8f084-a4ab-4818-bcb2-e9cfa664be9a from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...