0s autopkgtest [18:51:41]: starting date and time: 2024-11-18 18:51:41+0000 0s autopkgtest [18:51:41]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:51:41]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rimr4nv6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade ont-fast5-api --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@lcy02-1.secgroup --name adt-plucky-amd64-ont-fast5-api-20241118-181638-juju-7f2275-prod-proposed-migration-environment-20-86d69ee3-2b71-438a-8178-adf6e5f3872d --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [18:52:27]: testbed dpkg architecture: amd64 46s autopkgtest [18:52:27]: testbed apt version: 2.9.8 46s autopkgtest [18:52:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 46s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 46s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 46s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.2 kB] 46s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [815 kB] 46s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [64.6 kB] 46s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 46s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [258 kB] 46s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [659 kB] 46s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7272 B] 46s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [772 B] 46s Fetched 2115 kB in 0s (7533 kB/s) 46s Reading package lists... 47s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 48s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 49s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 49s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 49s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 50s Reading package lists... 50s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 51s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s autopkgtest [18:52:33]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 52s autopkgtest [18:52:33]: @@@@@@@@@@@@@@@@@@@@ apt-source ont-fast5-api 53s Get:1 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (dsc) [2236 B] 53s Get:2 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (tar) [1384 kB] 53s Get:3 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (diff) [4572 B] 53s gpgv: Signature made Wed Aug 28 16:17:26 2024 UTC 53s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 53s gpgv: issuer "tchet@debian.org" 53s gpgv: Can't check signature: No public key 53s dpkg-source: warning: cannot verify inline signature for ./ont-fast5-api_4.1.1+dfsg-4.dsc: no acceptable signature found 53s autopkgtest [18:52:34]: testing package ont-fast5-api version 4.1.1+dfsg-4 53s autopkgtest [18:52:34]: build not needed 53s autopkgtest [18:52:34]: test run-unit-test: preparing testbed 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 56s Starting pkgProblemResolver with broken count: 0 56s Starting 2 pkgProblemResolver with broken count: 0 56s Done 56s The following additional packages will be installed: 56s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 56s liblzf1 libsz2 libvbz-hdf-plugin-dev libvbz-hdf-plugin0t64 ont-fast5-api 56s python3-all python3-h5py python3-h5py-serial python3-numpy python3-packaging 56s python3-progressbar 56s Suggested packages: 56s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 56s The following NEW packages will be installed: 56s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 56s libhdf5-hl-100t64 liblapack3 liblzf1 libsz2 libvbz-hdf-plugin-dev 56s libvbz-hdf-plugin0t64 ont-fast5-api python3-all python3-h5py 56s python3-h5py-serial python3-numpy python3-packaging python3-progressbar 56s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 12.4 MB/12.4 MB of archives. 56s After this operation, 65.4 MB of additional disk space will be used. 56s Get:1 /tmp/autopkgtest.e8UbtM/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [720 B] 56s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 56s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 56s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 56s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 56s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 56s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 56s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvbz-hdf-plugin0t64 amd64 1.0.2-3.1build1 [20.3 kB] 56s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libvbz-hdf-plugin-dev amd64 1.0.2-3.1build1 [14.4 kB] 56s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 56s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py-serial amd64 3.11.0-8ubuntu1 [1686 kB] 56s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 56s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-progressbar all 2.5-4 [11.0 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 ont-fast5-api amd64 4.1.1+dfsg-4 [49.6 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 57s Fetched 12.4 MB in 0s (64.9 MB/s) 57s Selecting previously unselected package libaec0:amd64. 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75620 files and directories currently installed.) 57s Preparing to unpack .../00-libaec0_1.1.3-1_amd64.deb ... 57s Unpacking libaec0:amd64 (1.1.3-1) ... 57s Selecting previously unselected package libblas3:amd64. 57s Preparing to unpack .../01-libblas3_3.12.0-3build2_amd64.deb ... 57s Unpacking libblas3:amd64 (3.12.0-3build2) ... 57s Selecting previously unselected package libgfortran5:amd64. 57s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 57s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 57s Selecting previously unselected package libsz2:amd64. 57s Preparing to unpack .../03-libsz2_1.1.3-1_amd64.deb ... 57s Unpacking libsz2:amd64 (1.1.3-1) ... 57s Selecting previously unselected package libhdf5-103-1t64:amd64. 57s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 57s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 57s Selecting previously unselected package libhdf5-hl-100t64:amd64. 57s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 57s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 57s Selecting previously unselected package liblapack3:amd64. 57s Preparing to unpack .../06-liblapack3_3.12.0-3build2_amd64.deb ... 57s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 57s Selecting previously unselected package liblzf1:amd64. 57s Preparing to unpack .../07-liblzf1_3.6-4_amd64.deb ... 57s Unpacking liblzf1:amd64 (3.6-4) ... 57s Selecting previously unselected package libvbz-hdf-plugin0t64:amd64. 57s Preparing to unpack .../08-libvbz-hdf-plugin0t64_1.0.2-3.1build1_amd64.deb ... 57s Unpacking libvbz-hdf-plugin0t64:amd64 (1.0.2-3.1build1) ... 57s Selecting previously unselected package libvbz-hdf-plugin-dev:amd64. 57s Preparing to unpack .../09-libvbz-hdf-plugin-dev_1.0.2-3.1build1_amd64.deb ... 57s Unpacking libvbz-hdf-plugin-dev:amd64 (1.0.2-3.1build1) ... 57s Selecting previously unselected package python3-numpy. 57s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 57s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 58s Selecting previously unselected package python3-h5py-serial. 58s Preparing to unpack .../11-python3-h5py-serial_3.11.0-8ubuntu1_amd64.deb ... 58s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 58s Selecting previously unselected package python3-h5py. 58s Preparing to unpack .../12-python3-h5py_3.11.0-8ubuntu1_all.deb ... 58s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 58s Selecting previously unselected package python3-packaging. 58s Preparing to unpack .../13-python3-packaging_24.2-1_all.deb ... 58s Unpacking python3-packaging (24.2-1) ... 58s Selecting previously unselected package python3-progressbar. 58s Preparing to unpack .../14-python3-progressbar_2.5-4_all.deb ... 58s Unpacking python3-progressbar (2.5-4) ... 58s Selecting previously unselected package ont-fast5-api. 58s Preparing to unpack .../15-ont-fast5-api_4.1.1+dfsg-4_amd64.deb ... 58s Unpacking ont-fast5-api (4.1.1+dfsg-4) ... 58s Selecting previously unselected package python3-all. 58s Preparing to unpack .../16-python3-all_3.12.6-0ubuntu1_amd64.deb ... 58s Unpacking python3-all (3.12.6-0ubuntu1) ... 58s Selecting previously unselected package autopkgtest-satdep. 58s Preparing to unpack .../17-1-autopkgtest-satdep.deb ... 58s Unpacking autopkgtest-satdep (0) ... 58s Setting up python3-all (3.12.6-0ubuntu1) ... 58s Setting up libaec0:amd64 (1.1.3-1) ... 58s Setting up libvbz-hdf-plugin0t64:amd64 (1.0.2-3.1build1) ... 58s Setting up python3-progressbar (2.5-4) ... 58s Setting up libblas3:amd64 (3.12.0-3build2) ... 58s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 58s Setting up python3-packaging (24.2-1) ... 58s Setting up liblzf1:amd64 (3.6-4) ... 58s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 58s Setting up libsz2:amd64 (1.1.3-1) ... 58s Setting up liblapack3:amd64 (3.12.0-3build2) ... 58s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 58s Setting up libvbz-hdf-plugin-dev:amd64 (1.0.2-3.1build1) ... 58s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 60s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 60s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 60s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 60s Setting up python3-h5py (3.11.0-8ubuntu1) ... 60s Setting up ont-fast5-api (4.1.1+dfsg-4) ... 60s Setting up autopkgtest-satdep (0) ... 60s Processing triggers for man-db (2.13.0-1) ... 61s Processing triggers for libc-bin (2.40-1ubuntu3) ... 63s (Reading database ... 76815 files and directories currently installed.) 63s Removing autopkgtest-satdep (0) ... 63s autopkgtest [18:52:44]: test run-unit-test: [----------------------- 64s test_001_put_and_retrieve (test.test_alignment_tools.TestAlignmentTools.test_001_put_and_retrieve) ... ok 64s test_001_put_and_retrieve (test.test_basecall_1d_tools.TestBasecall1DTools.test_001_put_and_retrieve) ... ok 64s test_001_put_and_retrieve (test.test_basecall_2d_tools.TestBasecall2DTools.test_001_put_and_retrieve) ... ok 64s test_check_multi_read (test.test_check_compression.TestCheckCompression.test_check_multi_read) ... ok 64s test_check_read_compression_multi_read (test.test_check_compression.TestCheckCompression.test_check_read_compression_multi_read) ... ok 64s test_check_read_compression_single_read (test.test_check_compression.TestCheckCompression.test_check_read_compression_single_read) ... ok 64s test_check_read_compression_vbz (test.test_check_compression.TestCheckCompression.test_check_read_compression_vbz) ... ok 64s test_check_single_read_folder (test.test_check_compression.TestCheckCompression.test_check_single_read_folder) ... ok 64s test_multi_to_multi (test.test_compress_fast5.TestSanitise.test_multi_to_multi) ... ok 64s test_single_to_multi (test.test_compress_fast5.TestSanitise.test_single_to_multi) ... ok 64s test_add_read_from_multi (test.test_compress_fast5.TestVbzConvert.test_add_read_from_multi) ... ok 64s test_compress_in_place (test.test_compress_fast5.TestVbzConvert.test_compress_in_place) ... skipped 'Permission Denied - to open folder' 64s test_compress_read_from_single (test.test_compress_fast5.TestVbzConvert.test_compress_read_from_single) ... ok 64s test_conversion_script_multi (test.test_compress_fast5.TestVbzConvert.test_conversion_script_multi) ... skipped 'Permission Denied - to open folder' 64s test_conversion_script_multi_retains_end_reason_enumeration (test.test_compress_fast5.TestVbzConvert.test_conversion_script_multi_retains_end_reason_enumeration) 64s Test that given a collection of multi read fast5 files that undergo compression ... ok 64s test_conversion_script_single (test.test_compress_fast5.TestVbzConvert.test_conversion_script_single) ... skipped 'Permission Denied - to open folder' 64s test_conversion_script_single_retains_end_reason_enumeration (test.test_compress_fast5.TestVbzConvert.test_conversion_script_single_retains_end_reason_enumeration) 64s Test that given a collection of single read fast5 files that undergo compression ... ok 64s test_read_vbz_using_api (test.test_compress_fast5.TestVbzReadWrite.test_read_vbz_using_api) ... ok 64s test_write_vbz_directly (test.test_compress_fast5.TestVbzReadWrite.test_write_vbz_directly) ... skipped 'Tries to create dataset - permission denied' 64s test_write_vbz_using_api (test.test_compress_fast5.TestVbzReadWrite.test_write_vbz_using_api) ... ok 64s test_write_vbz_using_api_single_read (test.test_compress_fast5.TestVbzReadWrite.test_write_vbz_using_api_single_read) ... ok 64s test_register_plugin_no_prepend (test.test_compression_settings.TestCheckCompression.test_register_plugin_no_prepend) ... ok 64s test__clean (test.test_data_sanitisation.TestDataSanitisation.test__clean) ... ok 64s test__sanitize_data (test.test_data_sanitisation.TestDataSanitisation.test__sanitize_data) ... ok 64s test__sanitize_data_emptystrings (test.test_data_sanitisation.TestDataSanitisation.test__sanitize_data_emptystrings) ... ok 64s test_real_example_file (test.test_data_sanitisation.TestDataSanitisation.test_real_example_file) ... ok 64s test_sanitise_array_empty_string (test.test_data_sanitisation.TestDataSanitisation.test_sanitise_array_empty_string) ... ok 64s test_demux_1t (test.test_demux_fast5.TestDemuxFast5.test_demux_1t) ... ok 65s test_demux_8t (test.test_demux_fast5.TestDemuxFast5.test_demux_8t) ... ok 65s test_parse_summary (test.test_demux_fast5.TestDemuxFast5.test_parse_summary) ... ok 65s test_001_read_events (test.test_event_detection_tools.TestEventDetectionTools.test_001_read_events) ... ok 65s test_002_write_events (test.test_event_detection_tools.TestEventDetectionTools.test_002_write_events) ... ok 65s test_yield_fast5_files_from_dir (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_files_from_dir) ... ok 65s test_yield_fast5_files_from_fast5_file (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_files_from_fast5_file) ... ok 65s test_yield_fast5_reads_from_dir (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_from_dir) ... ok 65s test_yield_fast5_reads_from_fast5_file (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_from_fast5_file) ... ok 65s test_yield_fast5_reads_set_versus_list_equality (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_set_versus_list_equality) ... ok 65s test_yield_fast5_reads_type_error (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_type_error) ... ok 65s test_yield_fast5_reads_with_empty_set (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_empty_set) ... ok 65s test_yield_fast5_reads_with_garbage_set (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_garbage_set) ... ok 65s test_yield_fast5_reads_with_list (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_list) ... ok 65s test_yield_fast5_reads_with_set (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_set) ... ok 65s test_add_read_to_multi (test.test_fast5_converter.TestFast5Converter.test_add_read_to_multi) ... ok 65s test_multi_to_single (test.test_fast5_converter.TestFast5Converter.test_multi_to_single) ... ok 65s test_multi_to_single_incorrect_types (test.test_fast5_converter.TestFast5Converter.test_multi_to_single_incorrect_types) ... ok 65s test_single_to_multi (test.test_fast5_converter.TestFast5Converter.test_single_to_multi) ... skipped 'Permission Denied - to open folder' 65s test_single_to_multi_incorrect_types (test.test_fast5_converter.TestFast5Converter.test_single_to_multi_incorrect_types) ... ok 65s test_001_get_latest_analysis (test.test_fast5_file.TestFast5File.test_001_get_latest_analysis) ... ok 65s test_002_add_analysis_group (test.test_fast5_file.TestFast5File.test_002_add_analysis_group) ... ok 65s test_002_read_summary_data (test.test_fast5_file.TestFast5File.test_002_read_summary_data) ... ok 65s test_003_add_analysis_subgroup (test.test_fast5_file.TestFast5File.test_003_add_analysis_subgroup) ... ok 65s test_010_v0_6_single (test.test_fast5_file.TestFast5File.test_010_v0_6_single) ... ok 65s test_011_v0_6_raw (test.test_fast5_file.TestFast5File.test_011_v0_6_raw) ... ok 65s test_012_v1_0_single (test.test_fast5_file.TestFast5File.test_012_v1_0_single) ... ok 65s test_fast5_add_analysis_dataset (test.test_fast5_file.TestFast5File.test_fast5_add_analysis_dataset) ... ok 65s test_fast5_add_and_get_chain (test.test_fast5_file.TestFast5File.test_fast5_add_and_get_chain) ... ok 65s test_fast5_add_group (test.test_fast5_file.TestFast5File.test_fast5_add_group) ... ok 65s test_fast5_set_analysis_config (test.test_fast5_file.TestFast5File.test_fast5_set_analysis_config) ... ok 65s test_correct_type (test.test_fast5_interface.TestFast5Interface.test_correct_type) ... ok 65s test_extract_selected_reads (test.test_fast5_subset.TestFast5Subset.test_extract_selected_reads) ... ok 65s test_read_generator (test.test_fast5_subset.TestFast5Subset.test_read_generator) ... ok 65s test_selector_args_generator (test.test_fast5_subset.TestFast5Subset.test_selector_args_generator) ... ok 65s test_subset_from_multi (test.test_fast5_subset.TestFast5Subset.test_subset_from_multi) ... ok 65s test_subset_from_single (test.test_fast5_subset.TestFast5Subset.test_subset_from_single) ... ok 65s test_create_read (test.test_hardlink_metadata.TestHardlinkMetaData.test_create_read) ... ok 65s test_hardlink_multi_compression (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_multi_compression) ... ok 65s test_hardlink_single_to_multi (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_single_to_multi) ... ok 65s test_hardlink_subset (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_subset) ... ok 65s test_hardlink_subset_single_reads (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_subset_single_reads) ... ok 65s test_add_analysis (test.test_multi_fast5.TestMultiFast5.test_add_analysis) ... ok 65s test_channel_info (test.test_multi_fast5.TestMultiFast5.test_channel_info) ... ok 65s test_raw_data (test.test_multi_fast5.TestMultiFast5.test_raw_data) ... ok 65s test_read_interface (test.test_multi_fast5.TestMultiFast5.test_read_interface) ... ok 65s test_tracking_id (test.test_multi_fast5.TestMultiFast5.test_tracking_id) ... ok 65s test_001_raw_only (test.test_segmentation_tools.TestSegmentationTools.test_001_raw_only) ... ok 65s test_002_events_only (test.test_segmentation_tools.TestSegmentationTools.test_002_events_only) ... ok 65s 65s ---------------------------------------------------------------------- 65s Ran 76 tests in 1.486s 65s 65s OK (skipped=5) 65s autopkgtest [18:52:46]: test run-unit-test: -----------------------] 66s autopkgtest [18:52:47]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 66s run-unit-test PASS 66s autopkgtest [18:52:47]: @@@@@@@@@@@@@@@@@@@@ summary 66s run-unit-test PASS 75s nova [W] Skipping flock for amd64 75s Creating nova instance adt-plucky-amd64-ont-fast5-api-20241118-181638-juju-7f2275-prod-proposed-migration-environment-20-86d69ee3-2b71-438a-8178-adf6e5f3872d from image adt/ubuntu-plucky-amd64-server-20241118.img (UUID a445057a-6704-405a-bc03-181ba96486b5)...