0s autopkgtest [19:54:33]: starting date and time: 2024-11-16 19:54:33+0000 0s autopkgtest [19:54:33]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:54:33]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v0we0pfk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:openmpi,src:armci-mpi,src:murasaki --apt-upgrade nwchem --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openmpi/5.0.5-6 armci-mpi/0.4-4 murasaki/1.68.6-14' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-6.secgroup --name adt-plucky-amd64-nwchem-20241116-195433-juju-7f2275-prod-proposed-migration-environment-15-5fe1667b-54fc-423e-a266-495eec56b8c2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 55s autopkgtest [19:55:28]: testbed dpkg architecture: amd64 55s autopkgtest [19:55:28]: testbed apt version: 2.9.8 55s autopkgtest [19:55:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 55s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1005 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.7 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [172 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [819 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [301 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 55s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 56s Fetched 2636 kB in 0s (8180 kB/s) 56s Reading package lists... 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s Calculating upgrade... 58s The following NEW packages will be installed: 58s python3.13-gdbm 58s The following packages will be upgraded: 58s debianutils libftdi1-2 libnvme1t64 python3-gdbm 58s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 252 kB of archives. 58s After this operation, 104 kB of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 debianutils amd64 5.21 [92.9 kB] 58s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 58s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 58s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-7build1 [30.2 kB] 58s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11-2 [88.7 kB] 58s Fetched 252 kB in 0s (7057 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 58s Preparing to unpack .../debianutils_5.21_amd64.deb ... 58s Unpacking debianutils (5.21) over (5.20) ... 58s Setting up debianutils (5.21) ... 58s Selecting previously unselected package python3.13-gdbm. 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 58s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 58s Unpacking python3.13-gdbm (3.13.0-2) ... 59s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 59s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 59s Preparing to unpack .../libftdi1-2_1.5-7build1_amd64.deb ... 59s Unpacking libftdi1-2:amd64 (1.5-7build1) over (1.5-7) ... 59s Preparing to unpack .../libnvme1t64_1.11-2_amd64.deb ... 59s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 59s Setting up libftdi1-2:amd64 (1.5-7build1) ... 59s Setting up libnvme1t64 (1.11-2) ... 59s Setting up python3.13-gdbm (3.13.0-2) ... 59s Setting up python3-gdbm:amd64 (3.12.7-1) ... 59s Processing triggers for man-db (2.13.0-1) ... 60s Processing triggers for libc-bin (2.40-1ubuntu3) ... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 61s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 61s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 61s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 62s Reading package lists... 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 63s Calculating upgrade... 63s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [19:55:37]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 64s autopkgtest [19:55:37]: @@@@@@@@@@@@@@@@@@@@ apt-source nwchem 67s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nwchem 7.2.2-2build1 (dsc) [2294 B] 67s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nwchem 7.2.2-2build1 (tar) [167 MB] 67s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nwchem 7.2.2-2build1 (diff) [559 kB] 67s gpgv: Signature made Thu Aug 1 18:16:59 2024 UTC 67s gpgv: using RSA key 883FEC247A03BE63B70FD5F920FB053CAF9559CF 67s gpgv: issuer "eeickmeyer@ubuntu.com" 67s gpgv: Can't check signature: No public key 67s dpkg-source: warning: cannot verify inline signature for ./nwchem_7.2.2-2build1.dsc: no acceptable signature found 104s autopkgtest [19:56:17]: testing package nwchem version 7.2.2-2build1 104s autopkgtest [19:56:17]: build not needed 124s autopkgtest [19:56:37]: test testsuite.sh: preparing testbed 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 127s The following additional packages will be installed: 127s libamd-comgr2 libamdhip64-5 libblas3 libdrm-amdgpu1 127s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 127s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 127s libibumad3 liblapack3 libllvm17t64 libmunge2 libopenmpi3t64 libpciaccess0 127s libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 127s libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin nwchem 127s nwchem-data nwchem-openmpi ocl-icd-libopencl1 openmpi-bin openmpi-common 127s Suggested packages: 127s libhwloc-contrib-plugins scalapack-doc opencl-icd gfortran 127s | fortran-compiler 127s The following NEW packages will be installed: 127s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libblas3 libdrm-amdgpu1 127s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 127s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 127s libibumad3 liblapack3 libllvm17t64 libmunge2 libopenmpi3t64 libpciaccess0 127s libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 127s libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin nwchem 127s nwchem-data nwchem-openmpi ocl-icd-libopencl1 openmpi-bin openmpi-common 127s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 82.9 MB/82.9 MB of archives. 127s After this operation, 372 MB of additional disk space will be used. 127s Get:1 /tmp/autopkgtest.Eynoru/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [756 B] 127s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 127s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 127s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 127s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 127s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 127s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 127s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 127s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 127s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 127s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 127s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 127s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 127s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 127s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 127s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 127s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 127s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 127s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 127s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 127s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 127s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 127s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 127s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 127s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 127s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 127s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 127s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-common all 5.0.5-6 [95.6 kB] 127s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-bin amd64 5.0.5-6 [169 kB] 127s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 127s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1ubuntu2 [1758 kB] 127s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 nwchem-data all 7.2.2-2build1 [6082 kB] 127s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 nwchem-openmpi amd64 7.2.2-2build1 [14.7 MB] 127s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 nwchem all 7.2.2-2build1 [18.8 kB] 128s Fetched 82.9 MB in 1s (109 MB/s) 128s Selecting previously unselected package libllvm17t64:amd64. 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 128s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 128s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 128s Selecting previously unselected package libamd-comgr2:amd64. 128s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 128s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 129s Selecting previously unselected package libdrm-amdgpu1:amd64. 129s Preparing to unpack .../02-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 129s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 129s Selecting previously unselected package libhsakmt1:amd64. 129s Preparing to unpack .../03-libhsakmt1_5.7.0-1build1_amd64.deb ... 129s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 129s Selecting previously unselected package libhsa-runtime64-1. 129s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 129s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 129s Selecting previously unselected package libamdhip64-5. 129s Preparing to unpack .../05-libamdhip64-5_5.7.1-5_amd64.deb ... 129s Unpacking libamdhip64-5 (5.7.1-5) ... 129s Selecting previously unselected package libblas3:amd64. 129s Preparing to unpack .../06-libblas3_3.12.0-3build2_amd64.deb ... 129s Unpacking libblas3:amd64 (3.12.0-3build2) ... 129s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 129s Preparing to unpack .../07-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 129s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 129s Selecting previously unselected package libpsm-infinipath1. 129s Preparing to unpack .../08-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 129s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 129s Selecting previously unselected package libpsm2-2. 129s Preparing to unpack .../09-libpsm2-2_11.2.185-2.1_amd64.deb ... 129s Unpacking libpsm2-2 (11.2.185-2.1) ... 129s Selecting previously unselected package librdmacm1t64:amd64. 129s Preparing to unpack .../10-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 129s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 129s Selecting previously unselected package libfabric1:amd64. 129s Preparing to unpack .../11-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 129s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 129s Selecting previously unselected package libgfortran5:amd64. 129s Preparing to unpack .../12-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 129s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 129s Selecting previously unselected package libgomp1:amd64. 129s Preparing to unpack .../13-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 129s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 129s Selecting previously unselected package libhwloc15:amd64. 129s Preparing to unpack .../14-libhwloc15_2.11.2-1_amd64.deb ... 129s Unpacking libhwloc15:amd64 (2.11.2-1) ... 129s Selecting previously unselected package liblapack3:amd64. 129s Preparing to unpack .../15-liblapack3_3.12.0-3build2_amd64.deb ... 129s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 129s Selecting previously unselected package libmunge2:amd64. 129s Preparing to unpack .../16-libmunge2_0.5.15-4build1_amd64.deb ... 129s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 129s Selecting previously unselected package libpciaccess0:amd64. 129s Preparing to unpack .../17-libpciaccess0_0.17-3build1_amd64.deb ... 129s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 129s Selecting previously unselected package libxnvctrl0:amd64. 129s Preparing to unpack .../18-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 129s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 129s Selecting previously unselected package ocl-icd-libopencl1:amd64. 129s Preparing to unpack .../19-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 129s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 129s Selecting previously unselected package libhwloc-plugins:amd64. 129s Preparing to unpack .../20-libhwloc-plugins_2.11.2-1_amd64.deb ... 129s Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... 129s Selecting previously unselected package libpmix2t64:amd64. 129s Preparing to unpack .../21-libpmix2t64_5.0.3-2_amd64.deb ... 129s Unpacking libpmix2t64:amd64 (5.0.3-2) ... 129s Selecting previously unselected package libibumad3:amd64. 129s Preparing to unpack .../22-libibumad3_52.0-2ubuntu1_amd64.deb ... 129s Unpacking libibumad3:amd64 (52.0-2ubuntu1) ... 129s Selecting previously unselected package libibmad5:amd64. 129s Preparing to unpack .../23-libibmad5_52.0-2ubuntu1_amd64.deb ... 129s Unpacking libibmad5:amd64 (52.0-2ubuntu1) ... 129s Selecting previously unselected package libucx0:amd64. 129s Preparing to unpack .../24-libucx0_1.17.0+ds-3build1_amd64.deb ... 129s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 129s Selecting previously unselected package libopenmpi3t64:amd64. 129s Preparing to unpack .../25-libopenmpi3t64_5.0.5-6_amd64.deb ... 129s Unpacking libopenmpi3t64:amd64 (5.0.5-6) ... 129s Selecting previously unselected package openmpi-common. 129s Preparing to unpack .../26-openmpi-common_5.0.5-6_all.deb ... 129s Unpacking openmpi-common (5.0.5-6) ... 129s Selecting previously unselected package openmpi-bin. 129s Preparing to unpack .../27-openmpi-bin_5.0.5-6_amd64.deb ... 129s Unpacking openmpi-bin (5.0.5-6) ... 129s Selecting previously unselected package mpi-default-bin. 129s Preparing to unpack .../28-mpi-default-bin_1.17_amd64.deb ... 129s Unpacking mpi-default-bin (1.17) ... 129s Selecting previously unselected package libscalapack-openmpi2.2:amd64. 129s Preparing to unpack .../29-libscalapack-openmpi2.2_2.2.1-3.1ubuntu2_amd64.deb ... 129s Unpacking libscalapack-openmpi2.2:amd64 (2.2.1-3.1ubuntu2) ... 130s Selecting previously unselected package nwchem-data. 130s Preparing to unpack .../30-nwchem-data_7.2.2-2build1_all.deb ... 130s Unpacking nwchem-data (7.2.2-2build1) ... 130s Selecting previously unselected package nwchem-openmpi. 130s Preparing to unpack .../31-nwchem-openmpi_7.2.2-2build1_amd64.deb ... 130s Unpacking nwchem-openmpi (7.2.2-2build1) ... 130s Selecting previously unselected package nwchem. 130s Preparing to unpack .../32-nwchem_7.2.2-2build1_all.deb ... 130s Unpacking nwchem (7.2.2-2build1) ... 130s Selecting previously unselected package autopkgtest-satdep. 130s Preparing to unpack .../33-1-autopkgtest-satdep.deb ... 130s Unpacking autopkgtest-satdep (0) ... 130s Setting up libpciaccess0:amd64 (0.17-3build1) ... 130s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 130s Setting up nwchem-data (7.2.2-2build1) ... 130s Setting up libibumad3:amd64 (52.0-2ubuntu1) ... 130s Setting up libibmad5:amd64 (52.0-2ubuntu1) ... 130s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 130s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 130s Setting up libblas3:amd64 (3.12.0-3build2) ... 130s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 130s Setting up libmunge2:amd64 (0.5.15-4build1) ... 130s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 130s Setting up libhwloc15:amd64 (2.11.2-1) ... 130s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 130s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 130s Setting up libpsm2-2 (11.2.185-2.1) ... 130s Setting up openmpi-common (5.0.5-6) ... 130s Setting up librdmacm1t64:amd64 (52.0-2ubuntu1) ... 130s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 130s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 130s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 130s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 130s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 130s Setting up liblapack3:amd64 (3.12.0-3build2) ... 130s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 130s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 130s Setting up libpmix2t64:amd64 (5.0.3-2) ... 130s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 130s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 130s Setting up libamdhip64-5 (5.7.1-5) ... 130s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 130s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 130s Setting up openmpi-bin (5.0.5-6) ... 130s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 130s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 130s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 130s Setting up mpi-default-bin (1.17) ... 130s Setting up libscalapack-openmpi2.2:amd64 (2.2.1-3.1ubuntu2) ... 130s Setting up nwchem-openmpi (7.2.2-2build1) ... 130s Setting up nwchem (7.2.2-2build1) ... 130s Setting up autopkgtest-satdep (0) ... 130s Processing triggers for man-db (2.13.0-1) ... 131s Processing triggers for libc-bin (2.40-1ubuntu3) ... 133s (Reading database ... 77652 files and directories currently installed.) 133s Removing autopkgtest-satdep (0) ... 133s autopkgtest [19:56:46]: test testsuite.sh: [----------------------- 133s ===== TESTING NWCHEM WITH DEFAULT MPI INSTALLATION ===== 133s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 133s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 134s 134s 134s Running tests/dft_he2+/dft_he2+ 134s 134s cleaning scratch 134s copying input and verified output files 134s running nwchem (/usr/bin/nwchem) with 1 processors 134s 148s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 149s OK 149s 149s Running tests/qmmm_grad0/qmmm_grad0 149s 149s cleaning scratch 149s copying input and verified output files 149s running nwchem (/usr/bin/nwchem) with 1 processors 149s 153s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 153s OK 153s 153s Running tests/auh2o/auh2o 153s 153s cleaning scratch 153s copying input and verified output files 153s running nwchem (/usr/bin/nwchem) with 1 processors 153s 157s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 157s OK 157s 157s Running tests/autosym/autosym 157s 157s cleaning scratch 157s copying input and verified output files 157s running nwchem (/usr/bin/nwchem) with 1 processors 157s 171s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 171s OK 171s 171s Running tests/h2mp2/h2mp2 171s 171s cleaning scratch 171s copying input and verified output files 171s running nwchem (/usr/bin/nwchem) with 1 processors 171s 174s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 174s OK 174s 174s Running tests/h2o/h2o 174s 174s cleaning scratch 174s copying input and verified output files 174s running nwchem (/usr/bin/nwchem) with 1 processors 174s 176s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 176s OK 176s 176s Running tests/hess_h2o/hess_h2o 176s 176s cleaning scratch 176s copying input and verified output files 176s running nwchem (/usr/bin/nwchem) with 1 processors 176s 183s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 183s OK 183s 183s Running tests/prop_h2o/prop_h2o 183s 183s cleaning scratch 183s copying input and verified output files 183s running nwchem (/usr/bin/nwchem) with 1 processors 183s 188s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 188s OK 188s 188s Running tests/geom_zmatrix/geom_zmatrix 188s 188s cleaning scratch 188s copying input and verified output files 188s running nwchem (/usr/bin/nwchem) with 1 processors 188s 191s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 191s OK 191s 191s Running tests/rimp2_ne/rimp2_ne 191s 191s cleaning scratch 191s copying input and verified output files 191s running nwchem (/usr/bin/nwchem) with 1 processors 191s 195s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 195s OK 195s 195s Running tests/small_intchk/small_intchk 195s 195s cleaning scratch 195s copying input and verified output files 195s running nwchem (/usr/bin/nwchem) with 1 processors 195s 204s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 204s OK 204s 204s Running tests/tagcheck/tagcheck 204s 204s cleaning scratch 204s copying input and verified output files 204s running nwchem (/usr/bin/nwchem) with 1 processors 204s 207s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 207s OK 207s 207s Running tests/testtab/testtab 207s 207s cleaning scratch 207s copying input and verified output files 207s running nwchem (/usr/bin/nwchem) with 1 processors 207s 209s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 209s OK 209s 209s Running tests/h2o_dk/h2o_dk 209s 209s cleaning scratch 209s copying input and verified output files 209s running nwchem (/usr/bin/nwchem) with 1 processors 209s 215s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 215s OK 215s 215s Running tests/cosmo_h2o/cosmo_h2o 215s 215s cleaning scratch 215s copying input and verified output files 215s running nwchem (/usr/bin/nwchem) with 1 processors 215s 217s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 217s OK 217s 217s Running tests/ch5n_nbo/ch5n_nbo 217s 217s cleaning scratch 217s copying input and verified output files 217s running nwchem (/usr/bin/nwchem) with 1 processors 217s 219s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 219s OK 219s 219s Running tests/h2s_finite/h2s_finite 219s 219s cleaning scratch 219s copying input and verified output files 219s running nwchem (/usr/bin/nwchem) with 1 processors 219s 223s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 223s OK 223s 223s Running tests/pyqa3/pyqa3 223s 223s cleaning scratch 224s copying input and verified output files 224s running nwchem (/usr/bin/nwchem) with 1 processors 224s 228s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 228s OK 228s 228s Running tests/startag/startag 228s 228s cleaning scratch 228s copying input and verified output files 228s running nwchem (/usr/bin/nwchem) with 1 processors 228s 230s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 230s OK 230s 230s Running tests/esp/esp 230s 230s cleaning scratch 230s copying input and verified output files 230s running nwchem (/usr/bin/nwchem) with 1 processors 230s 233s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 233s ESP comparison failed 233s --- esp_temp.ok.q 2024-11-16 19:58:26.650530531 +0000 233s +++ esp_temp.q 2024-11-16 19:58:26.654530558 +0000 233s @@ -1,5 +1,5 @@ 233s 9 5 233s - C nan nan nan nan nan nan nan nan 233s + C nan nan nan nan -nan nan nan nan 233s H nan nan nan nan nan nan nan nan 233s H nan nan nan nan nan nan nan nan 233s H nan nan nan nan nan nan nan nan 233s @@ -7,4 +7,4 @@ 233s H nan nan nan nan nan nan nan nan 233s H nan nan nan nan nan nan nan nan 233s S nan nan nan nan nan nan nan nan 233s - H nan nan nan nan nan nan nan nan 233s + H nan nan nan nan nan nan -nan nan 233s 233s Running tests/esp_uhf/esp_uhf 233s 233s cleaning scratch 233s copying input and verified output files 233s running nwchem (/usr/bin/nwchem) with 1 processors 233s 237s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 237s ESP charges match 237s 237s 237s Running tests/dft_bsse/dft_bsse 237s 237s cleaning scratch 237s copying input and verified output files 237s running nwchem (/usr/bin/nwchem) with 1 processors 237s 242s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 242s OK 242s 242s Running tests/dplot_dft/dplot_dft 242s 242s cleaning scratch 242s copying input and verified output files 242s running nwchem (/usr/bin/nwchem) with 1 processors 242s 244s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 244s OK 244s 244s Running tests/dft_meta/dft_meta 244s 244s cleaning scratch 244s copying input and verified output files 244s running nwchem (/usr/bin/nwchem) with 1 processors 244s 294s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 294s OK 294s 294s Running tests/dft_mpwb1khf/dft_mpwb1khf 294s 294s cleaning scratch 294s copying input and verified output files 294s running nwchem (/usr/bin/nwchem) with 1 processors 294s 299s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 299s OK 299s 299s Running tests/prop_uhf_h2o/prop_uhf_h2o 299s 299s cleaning scratch 299s copying input and verified output files 299s running nwchem (/usr/bin/nwchem) with 1 processors 299s 326s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 326s OK 326s 326s Running tests/et_zn_dimer/et_zn_dimer 326s 326s cleaning scratch 326s copying input and verified output files 326s running nwchem (/usr/bin/nwchem) with 1 processors 326s 348s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 348s OK 348s 348s Running tests/vectors_rotate/vectors_rotate 348s 348s cleaning scratch 348s copying input and verified output files 348s running nwchem (/usr/bin/nwchem) with 1 processors 348s 351s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 351s OK 351s 351s Running tests/sad_ch3hf/sad_ch3hf 351s 351s cleaning scratch 351s copying input and verified output files 351s running nwchem (/usr/bin/nwchem) with 1 processors 351s 368s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 368s OK 368s 368s Running tests/band/band 368s 368s cleaning scratch 368s copying input and verified output files 368s running nwchem (/usr/bin/nwchem) with 1 processors 368s 375s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 375s OK 375s 375s Running tests/pspw/pspw 375s 375s cleaning scratch 375s copying input and verified output files 375s running nwchem (/usr/bin/nwchem) with 1 processors 375s 389s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 389s OK 389s 389s Running tests/pspw_stress/pspw_stress 389s 389s cleaning scratch 389s copying input and verified output files 389s running nwchem (/usr/bin/nwchem) with 1 processors 389s 407s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 407s OK 407s 407s Running tests/mcscf_ch2/mcscf_ch2 407s 407s cleaning scratch 407s copying input and verified output files 407s running nwchem (/usr/bin/nwchem) with 1 processors 407s 434s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 434s OK 434s 434s Running tests/dft_li2freq/dft_li2freq 434s 434s cleaning scratch 434s copying input and verified output files 434s running nwchem (/usr/bin/nwchem) with 1 processors 434s 491s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 491s OK 491s 491s Running tests/n2_ccsd/n2_ccsd 491s 491s cleaning scratch 491s copying input and verified output files 491s running nwchem (/usr/bin/nwchem) with 1 processors 491s 533s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 533s OK 533s 533s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 533s 533s cleaning scratch 533s copying input and verified output files 533s running nwchem (/usr/bin/nwchem) with 1 processors 533s 537s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 537s OK 537s 537s Running tests/tddft_h2o/tddft_h2o 537s 537s cleaning scratch 537s copying input and verified output files 537s running nwchem (/usr/bin/nwchem) with 1 processors 537s 570s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 570s OK 570s 570s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 570s 570s cleaning scratch 570s copying input and verified output files 570s running nwchem (/usr/bin/nwchem) with 1 processors 570s 883s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 883s OK 883s 883s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 883s 883s cleaning scratch 883s copying input and verified output files 883s running nwchem (/usr/bin/nwchem) with 1 processors 883s 900s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 900s OK 900s 900s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 900s 900s cleaning scratch 900s copying input and verified output files 900s running nwchem (/usr/bin/nwchem) with 1 processors 900s 904s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 904s OK 904s 904s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 904s 904s cleaning scratch 904s copying input and verified output files 904s running nwchem (/usr/bin/nwchem) with 1 processors 904s 965s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 965s OK 965s 965s Running tests/mp2_scs_n2/mp2_scs_n2 965s 965s cleaning scratch 965s copying input and verified output files 965s running nwchem (/usr/bin/nwchem) with 1 processors 965s 983s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 983s OK 983s 983s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 983s 983s cleaning scratch 983s copying input and verified output files 983s running nwchem (/usr/bin/nwchem) with 1 processors 983s 1021s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1021s OK 1021s 1021s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 1021s 1021s cleaning scratch 1021s copying input and verified output files 1021s running nwchem (/usr/bin/nwchem) with 1 processors 1021s 1032s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1032s OK 1032s 1032s Running tests/water/water_md 1032s 1032s cleaning scratch 1032s copying input and verified output files 1032s running nwchem (/usr/bin/nwchem) with 1 processors 1032s 1032s verifying nwout ...... skipped 1032s verifying test ....... completed 1032s 1032s Running tests/water/water_pme 1032s 1032s cleaning scratch 1032s copying input and verified output files 1032s running nwchem (/usr/bin/nwchem) with 1 processors 1032s 1033s verifying nwout ...... skipped 1033s verifying test ....... completed 1033s 1033s Running tests/pspw_md/pspw_md 1033s 1033s cleaning scratch 1033s copying input and verified output files 1033s running nwchem (/usr/bin/nwchem) with 1 processors 1033s 1048s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1048s OK 1048s 1048s Running tests/cosmo_h3co/cosmo_h3co 1048s 1048s cleaning scratch 1048s copying input and verified output files 1048s running nwchem (/usr/bin/nwchem) with 1 processors 1048s 1059s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1059s OK 1059s 1059s Failed 1060s autopkgtest [20:12:13]: test testsuite.sh: -----------------------] 1060s autopkgtest [20:12:13]: test testsuite.sh: - - - - - - - - - - results - - - - - - - - - - 1060s testsuite.sh FAIL non-zero exit status 1 1060s autopkgtest [20:12:13]: test testsuite-openmpi: preparing testbed 1111s autopkgtest [20:13:04]: testbed dpkg architecture: amd64 1111s autopkgtest [20:13:04]: testbed apt version: 2.9.8 1111s autopkgtest [20:13:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 1111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 1111s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.7 kB] 1111s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 1111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1005 kB] 1111s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 1111s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [172 kB] 1111s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 1111s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [819 kB] 1111s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [301 kB] 1111s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 1111s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 1111s Fetched 2636 kB in 0s (6912 kB/s) 1112s Reading package lists... 1113s Reading package lists... 1113s Building dependency tree... 1113s Reading state information... 1113s Calculating upgrade... 1113s The following NEW packages will be installed: 1113s python3.13-gdbm 1113s The following packages will be upgraded: 1113s debianutils libftdi1-2 libnvme1t64 python3-gdbm 1114s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 1114s Need to get 252 kB of archives. 1114s After this operation, 104 kB of additional disk space will be used. 1114s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 debianutils amd64 5.21 [92.9 kB] 1114s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 1114s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 1114s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-7build1 [30.2 kB] 1114s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11-2 [88.7 kB] 1114s Fetched 252 kB in 0s (5473 kB/s) 1114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 1114s Preparing to unpack .../debianutils_5.21_amd64.deb ... 1114s Unpacking debianutils (5.21) over (5.20) ... 1114s Setting up debianutils (5.21) ... 1114s Selecting previously unselected package python3.13-gdbm. 1114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 1114s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 1114s Unpacking python3.13-gdbm (3.13.0-2) ... 1114s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 1114s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 1114s Preparing to unpack .../libftdi1-2_1.5-7build1_amd64.deb ... 1114s Unpacking libftdi1-2:amd64 (1.5-7build1) over (1.5-7) ... 1114s Preparing to unpack .../libnvme1t64_1.11-2_amd64.deb ... 1114s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 1114s Setting up libftdi1-2:amd64 (1.5-7build1) ... 1114s Setting up libnvme1t64 (1.11-2) ... 1114s Setting up python3.13-gdbm (3.13.0-2) ... 1114s Setting up python3-gdbm:amd64 (3.12.7-1) ... 1114s Processing triggers for man-db (2.13.0-1) ... 1116s Processing triggers for libc-bin (2.40-1ubuntu3) ... 1116s Reading package lists... 1116s Building dependency tree... 1116s Reading state information... 1116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1116s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 1116s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 1116s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 1116s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 1118s Reading package lists... 1118s Reading package lists... 1118s Building dependency tree... 1118s Reading state information... 1118s Calculating upgrade... 1119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1119s Reading package lists... 1119s Building dependency tree... 1119s Reading state information... 1119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1120s Reading package lists... 1121s Building dependency tree... 1121s Reading state information... 1121s Starting pkgProblemResolver with broken count: 0 1121s Starting 2 pkgProblemResolver with broken count: 0 1121s Done 1121s The following additional packages will be installed: 1121s libamd-comgr2 libamdhip64-5 libblas3 libdrm-amdgpu1 1121s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 1121s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 1121s libibumad3 liblapack3 libllvm17t64 libmunge2 libopenmpi3t64 libpciaccess0 1121s libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 1121s libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin nwchem-data 1121s nwchem-openmpi ocl-icd-libopencl1 openmpi-bin openmpi-common 1121s Suggested packages: 1121s libhwloc-contrib-plugins scalapack-doc opencl-icd gfortran 1121s | fortran-compiler 1121s The following NEW packages will be installed: 1121s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libblas3 libdrm-amdgpu1 1121s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 1121s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 1121s libibumad3 liblapack3 libllvm17t64 libmunge2 libopenmpi3t64 libpciaccess0 1121s libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 1121s libscalapack-openmpi2.2 libucx0 libxnvctrl0 mpi-default-bin nwchem-data 1121s nwchem-openmpi ocl-icd-libopencl1 openmpi-bin openmpi-common 1121s 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. 1121s Need to get 82.8 MB/82.9 MB of archives. 1121s After this operation, 372 MB of additional disk space will be used. 1121s Get:1 /tmp/autopkgtest.Eynoru/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [760 B] 1121s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 1122s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 1122s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 1122s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 1122s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 1122s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 1122s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 1122s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 1122s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 1122s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 1122s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 1122s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 1122s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 1122s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 1122s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 1122s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 1122s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 1122s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 1122s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 1122s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 1122s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 1122s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 1122s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 1122s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 1122s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 1122s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 1122s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-common all 5.0.5-6 [95.6 kB] 1122s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-bin amd64 5.0.5-6 [169 kB] 1122s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 1122s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1ubuntu2 [1758 kB] 1122s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 nwchem-data all 7.2.2-2build1 [6082 kB] 1122s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 nwchem-openmpi amd64 7.2.2-2build1 [14.7 MB] 1122s Fetched 82.8 MB in 1s (120 MB/s) 1122s Selecting previously unselected package libllvm17t64:amd64. 1122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 1122s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 1122s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 1123s Selecting previously unselected package libamd-comgr2:amd64. 1123s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 1123s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1123s Selecting previously unselected package libdrm-amdgpu1:amd64. 1123s Preparing to unpack .../02-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 1123s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 1123s Selecting previously unselected package libhsakmt1:amd64. 1123s Preparing to unpack .../03-libhsakmt1_5.7.0-1build1_amd64.deb ... 1123s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 1123s Selecting previously unselected package libhsa-runtime64-1. 1123s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 1123s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 1123s Selecting previously unselected package libamdhip64-5. 1123s Preparing to unpack .../05-libamdhip64-5_5.7.1-5_amd64.deb ... 1123s Unpacking libamdhip64-5 (5.7.1-5) ... 1123s Selecting previously unselected package libblas3:amd64. 1123s Preparing to unpack .../06-libblas3_3.12.0-3build2_amd64.deb ... 1123s Unpacking libblas3:amd64 (3.12.0-3build2) ... 1123s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 1123s Preparing to unpack .../07-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 1123s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 1123s Selecting previously unselected package libpsm-infinipath1. 1123s Preparing to unpack .../08-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 1123s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 1124s Selecting previously unselected package libpsm2-2. 1124s Preparing to unpack .../09-libpsm2-2_11.2.185-2.1_amd64.deb ... 1124s Unpacking libpsm2-2 (11.2.185-2.1) ... 1124s Selecting previously unselected package librdmacm1t64:amd64. 1124s Preparing to unpack .../10-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 1124s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 1124s Selecting previously unselected package libfabric1:amd64. 1124s Preparing to unpack .../11-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 1124s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 1124s Selecting previously unselected package libgfortran5:amd64. 1124s Preparing to unpack .../12-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 1124s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 1124s Selecting previously unselected package libgomp1:amd64. 1124s Preparing to unpack .../13-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 1124s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 1124s Selecting previously unselected package libhwloc15:amd64. 1124s Preparing to unpack .../14-libhwloc15_2.11.2-1_amd64.deb ... 1124s Unpacking libhwloc15:amd64 (2.11.2-1) ... 1124s Selecting previously unselected package liblapack3:amd64. 1124s Preparing to unpack .../15-liblapack3_3.12.0-3build2_amd64.deb ... 1124s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 1124s Selecting previously unselected package libmunge2:amd64. 1124s Preparing to unpack .../16-libmunge2_0.5.15-4build1_amd64.deb ... 1124s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 1124s Selecting previously unselected package libpciaccess0:amd64. 1124s Preparing to unpack .../17-libpciaccess0_0.17-3build1_amd64.deb ... 1124s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 1124s Selecting previously unselected package libxnvctrl0:amd64. 1124s Preparing to unpack .../18-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 1124s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 1124s Selecting previously unselected package ocl-icd-libopencl1:amd64. 1124s Preparing to unpack .../19-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 1124s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 1124s Selecting previously unselected package libhwloc-plugins:amd64. 1124s Preparing to unpack .../20-libhwloc-plugins_2.11.2-1_amd64.deb ... 1124s Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... 1124s Selecting previously unselected package libpmix2t64:amd64. 1124s Preparing to unpack .../21-libpmix2t64_5.0.3-2_amd64.deb ... 1124s Unpacking libpmix2t64:amd64 (5.0.3-2) ... 1124s Selecting previously unselected package libibumad3:amd64. 1124s Preparing to unpack .../22-libibumad3_52.0-2ubuntu1_amd64.deb ... 1124s Unpacking libibumad3:amd64 (52.0-2ubuntu1) ... 1124s Selecting previously unselected package libibmad5:amd64. 1124s Preparing to unpack .../23-libibmad5_52.0-2ubuntu1_amd64.deb ... 1124s Unpacking libibmad5:amd64 (52.0-2ubuntu1) ... 1124s Selecting previously unselected package libucx0:amd64. 1124s Preparing to unpack .../24-libucx0_1.17.0+ds-3build1_amd64.deb ... 1124s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 1124s Selecting previously unselected package libopenmpi3t64:amd64. 1124s Preparing to unpack .../25-libopenmpi3t64_5.0.5-6_amd64.deb ... 1124s Unpacking libopenmpi3t64:amd64 (5.0.5-6) ... 1124s Selecting previously unselected package openmpi-common. 1124s Preparing to unpack .../26-openmpi-common_5.0.5-6_all.deb ... 1124s Unpacking openmpi-common (5.0.5-6) ... 1124s Selecting previously unselected package openmpi-bin. 1124s Preparing to unpack .../27-openmpi-bin_5.0.5-6_amd64.deb ... 1124s Unpacking openmpi-bin (5.0.5-6) ... 1124s Selecting previously unselected package mpi-default-bin. 1124s Preparing to unpack .../28-mpi-default-bin_1.17_amd64.deb ... 1124s Unpacking mpi-default-bin (1.17) ... 1124s Selecting previously unselected package libscalapack-openmpi2.2:amd64. 1124s Preparing to unpack .../29-libscalapack-openmpi2.2_2.2.1-3.1ubuntu2_amd64.deb ... 1124s Unpacking libscalapack-openmpi2.2:amd64 (2.2.1-3.1ubuntu2) ... 1124s Selecting previously unselected package nwchem-data. 1124s Preparing to unpack .../30-nwchem-data_7.2.2-2build1_all.deb ... 1124s Unpacking nwchem-data (7.2.2-2build1) ... 1125s Selecting previously unselected package nwchem-openmpi. 1125s Preparing to unpack .../31-nwchem-openmpi_7.2.2-2build1_amd64.deb ... 1125s Unpacking nwchem-openmpi (7.2.2-2build1) ... 1125s Selecting previously unselected package autopkgtest-satdep. 1125s Preparing to unpack .../32-2-autopkgtest-satdep.deb ... 1125s Unpacking autopkgtest-satdep (0) ... 1125s Setting up libpciaccess0:amd64 (0.17-3build1) ... 1125s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 1125s Setting up nwchem-data (7.2.2-2build1) ... 1125s Setting up libibumad3:amd64 (52.0-2ubuntu1) ... 1125s Setting up libibmad5:amd64 (52.0-2ubuntu1) ... 1125s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 1125s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 1125s Setting up libblas3:amd64 (3.12.0-3build2) ... 1125s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 1125s Setting up libmunge2:amd64 (0.5.15-4build1) ... 1125s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 1125s Setting up libhwloc15:amd64 (2.11.2-1) ... 1125s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 1125s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 1125s Setting up libpsm2-2 (11.2.185-2.1) ... 1125s Setting up openmpi-common (5.0.5-6) ... 1125s Setting up librdmacm1t64:amd64 (52.0-2ubuntu1) ... 1125s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1125s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 1125s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 1125s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 1125s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 1125s Setting up liblapack3:amd64 (3.12.0-3build2) ... 1125s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1125s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 1125s Setting up libpmix2t64:amd64 (5.0.3-2) ... 1125s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 1125s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 1125s Setting up libamdhip64-5 (5.7.1-5) ... 1125s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 1125s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 1125s Setting up openmpi-bin (5.0.5-6) ... 1125s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1125s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 1125s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1125s Setting up mpi-default-bin (1.17) ... 1125s Setting up libscalapack-openmpi2.2:amd64 (2.2.1-3.1ubuntu2) ... 1125s Setting up nwchem-openmpi (7.2.2-2build1) ... 1125s Setting up autopkgtest-satdep (0) ... 1125s Processing triggers for man-db (2.13.0-1) ... 1125s Processing triggers for libc-bin (2.40-1ubuntu3) ... 1128s (Reading database ... 77583 files and directories currently installed.) 1128s Removing autopkgtest-satdep (0) ... 1176s autopkgtest [20:14:09]: test testsuite-openmpi: [----------------------- 1176s ===== TESTING NWCHEM BUILD FOR openmpi ===== 1176s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 1176s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 1176s 1176s 1176s Running tests/dft_he2+/dft_he2+ 1176s 1176s cleaning scratch 1176s copying input and verified output files 1176s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1176s 1190s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1190s OK 1191s 1191s Running tests/qmmm_grad0/qmmm_grad0 1191s 1191s cleaning scratch 1191s copying input and verified output files 1191s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1191s 1195s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1195s OK 1195s 1195s Running tests/auh2o/auh2o 1195s 1195s cleaning scratch 1195s copying input and verified output files 1195s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1195s 1198s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1198s OK 1198s 1198s Running tests/autosym/autosym 1198s 1198s cleaning scratch 1198s copying input and verified output files 1198s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1198s 1212s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1212s OK 1212s 1212s Running tests/h2mp2/h2mp2 1212s 1212s cleaning scratch 1212s copying input and verified output files 1212s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1212s 1215s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1215s OK 1215s 1215s Running tests/h2o/h2o 1215s 1215s cleaning scratch 1215s copying input and verified output files 1215s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1215s 1216s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1216s OK 1216s 1216s Running tests/hess_h2o/hess_h2o 1216s 1216s cleaning scratch 1216s copying input and verified output files 1216s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1216s 1224s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1224s OK 1224s 1224s Running tests/prop_h2o/prop_h2o 1224s 1224s cleaning scratch 1224s copying input and verified output files 1224s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1224s 1229s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1229s OK 1229s 1229s Running tests/geom_zmatrix/geom_zmatrix 1229s 1229s cleaning scratch 1229s copying input and verified output files 1229s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1229s 1233s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1233s OK 1233s 1233s Running tests/rimp2_ne/rimp2_ne 1233s 1233s cleaning scratch 1233s copying input and verified output files 1233s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1233s 1237s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1237s OK 1237s 1237s Running tests/small_intchk/small_intchk 1237s 1237s cleaning scratch 1237s copying input and verified output files 1237s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1237s 1245s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1245s OK 1245s 1245s Running tests/tagcheck/tagcheck 1245s 1245s cleaning scratch 1245s copying input and verified output files 1245s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1245s 1248s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1248s OK 1248s 1248s Running tests/testtab/testtab 1248s 1248s cleaning scratch 1248s copying input and verified output files 1248s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1248s 1250s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1250s OK 1250s 1250s Running tests/h2o_dk/h2o_dk 1250s 1250s cleaning scratch 1250s copying input and verified output files 1250s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1250s 1256s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1256s OK 1256s 1256s Running tests/cosmo_h2o/cosmo_h2o 1256s 1256s cleaning scratch 1256s copying input and verified output files 1256s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1256s 1258s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1258s OK 1258s 1258s Running tests/ch5n_nbo/ch5n_nbo 1258s 1258s cleaning scratch 1258s copying input and verified output files 1258s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1258s 1260s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1260s OK 1260s 1260s Running tests/h2s_finite/h2s_finite 1260s 1260s cleaning scratch 1260s copying input and verified output files 1260s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1260s 1265s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1265s OK 1265s 1265s Running tests/pyqa3/pyqa3 1265s 1265s cleaning scratch 1265s copying input and verified output files 1265s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1265s 1269s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1269s OK 1269s 1269s Running tests/startag/startag 1269s 1269s cleaning scratch 1269s copying input and verified output files 1269s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1269s 1272s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1272s OK 1272s 1272s Running tests/esp/esp 1272s 1272s cleaning scratch 1272s copying input and verified output files 1272s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1272s 1274s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1274s ESP comparison failed 1274s --- esp_temp.ok.q 2024-11-16 20:15:47.963562513 +0000 1274s +++ esp_temp.q 2024-11-16 20:15:47.967562539 +0000 1274s @@ -1,10 +1,10 @@ 1274s 9 5 1274s - C nan nan nan nan nan nan nan nan 1274s - H nan nan nan nan nan nan nan nan 1274s - H nan nan nan nan nan nan nan nan 1274s - H nan nan nan nan nan nan nan nan 1274s - C nan nan nan nan nan nan nan nan 1274s - H nan nan nan nan nan nan nan nan 1274s - H nan nan nan nan nan nan nan nan 1274s - S nan nan nan nan nan nan nan nan 1274s - H nan nan nan nan nan nan nan nan 1274s + C -nan -nan -nan -nan -nan -nan -nan -nan 1274s + H -nan -nan -nan -nan -nan -nan -nan -nan 1274s + H -nan -nan -nan -nan -nan -nan -nan -nan 1274s + H -nan -nan -nan -nan -nan -nan -nan -nan 1274s + C -nan -nan -nan -nan -nan -nan -nan -nan 1274s + H -nan -nan -nan -nan -nan -nan -nan -nan 1274s + H -nan -nan -nan -nan -nan -nan -nan -nan 1274s + S -nan -nan -nan -nan -nan -nan -nan -nan 1274s + H -nan -nan -nan -nan -nan -nan -nan -nan 1274s 1274s Running tests/esp_uhf/esp_uhf 1274s 1274s cleaning scratch 1274s copying input and verified output files 1274s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1274s 1278s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1279s ESP comparison failed 1279s --- esp_temp.ok.q 2024-11-16 20:15:52.001588605 +0000 1279s +++ esp_temp.q 2024-11-16 20:15:52.004588624 +0000 1279s @@ -1,10 +1,10 @@ 1279s 9 5 1279s - C nan nan nan nan nan nan nan nan 1279s - H nan nan nan nan nan nan nan nan 1279s - H nan nan nan nan nan nan nan nan 1279s - H nan nan nan nan nan nan nan nan 1279s - C nan nan nan nan nan nan nan nan 1279s - H nan nan nan nan nan nan nan nan 1279s - H nan nan nan nan nan nan nan nan 1279s - S nan nan nan nan nan nan nan nan 1279s - H nan nan nan nan nan nan nan nan 1279s + C nan nan -nan nan -nan nan -nan -nan 1279s + H 0.0000 -nan -nan nan nan nan -nan nan 1279s + H nan -nan -nan -nan 0.0000 -nan -nan nan 1279s + H nan -nan -nan -nan nan -nan -nan -nan 1279s + C -nan -nan -nan -nan nan -nan -nan -nan 1279s + H -nan -nan -nan -nan -nan -nan -nan -nan 1279s + H -nan -nan nan -nan -nan -nan nan -nan 1279s + S -nan nan nan -nan -nan -nan -nan -nan 1279s + H -nan nan -nan nan -nan nan -nan -nan 1279s 1279s Running tests/dft_bsse/dft_bsse 1279s 1279s cleaning scratch 1279s copying input and verified output files 1279s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1279s 1283s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1283s OK 1283s 1283s Running tests/dplot_dft/dplot_dft 1283s 1283s cleaning scratch 1283s copying input and verified output files 1283s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1283s 1285s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1285s OK 1285s 1285s Running tests/dft_meta/dft_meta 1285s 1285s cleaning scratch 1285s copying input and verified output files 1285s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1285s 1336s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1336s OK 1336s 1336s Running tests/dft_mpwb1khf/dft_mpwb1khf 1336s 1336s cleaning scratch 1336s copying input and verified output files 1336s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1336s 1341s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1341s OK 1341s 1341s Running tests/prop_uhf_h2o/prop_uhf_h2o 1341s 1341s cleaning scratch 1341s copying input and verified output files 1341s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1341s 1368s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1368s OK 1368s 1368s Running tests/et_zn_dimer/et_zn_dimer 1368s 1368s cleaning scratch 1368s copying input and verified output files 1368s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1368s 1391s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1391s OK 1391s 1391s Running tests/vectors_rotate/vectors_rotate 1391s 1391s cleaning scratch 1391s copying input and verified output files 1391s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1391s 1395s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1395s OK 1395s 1395s Running tests/sad_ch3hf/sad_ch3hf 1395s 1395s cleaning scratch 1395s copying input and verified output files 1395s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1395s 1410s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1410s OK 1410s 1410s Running tests/band/band 1410s 1410s cleaning scratch 1410s copying input and verified output files 1410s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1410s 1417s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1417s OK 1417s 1417s Running tests/pspw/pspw 1417s 1417s cleaning scratch 1417s copying input and verified output files 1417s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1417s 1431s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1431s OK 1431s 1431s Running tests/pspw_stress/pspw_stress 1431s 1431s cleaning scratch 1431s copying input and verified output files 1431s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1431s 1450s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1450s OK 1450s 1450s Running tests/mcscf_ch2/mcscf_ch2 1450s 1450s cleaning scratch 1450s copying input and verified output files 1450s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1450s 1480s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1480s OK 1480s 1480s Running tests/dft_li2freq/dft_li2freq 1480s 1480s cleaning scratch 1480s copying input and verified output files 1480s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1480s 1537s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1537s OK 1537s 1537s Running tests/n2_ccsd/n2_ccsd 1537s 1537s cleaning scratch 1538s copying input and verified output files 1538s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1538s 1580s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1580s OK 1580s 1580s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 1580s 1580s cleaning scratch 1580s copying input and verified output files 1580s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1580s 1584s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1584s OK 1584s 1584s Running tests/tddft_h2o/tddft_h2o 1584s 1584s cleaning scratch 1584s copying input and verified output files 1584s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1584s 1617s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1617s OK 1617s 1617s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 1617s 1617s cleaning scratch 1617s copying input and verified output files 1617s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1617s 1932s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1932s OK 1932s 1932s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 1932s 1932s cleaning scratch 1932s copying input and verified output files 1932s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1932s 1949s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1949s OK 1949s 1949s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 1949s 1949s cleaning scratch 1949s copying input and verified output files 1949s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1949s 1954s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 1954s OK 1954s 1954s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 1954s 1954s cleaning scratch 1954s copying input and verified output files 1954s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 1954s 2014s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2014s OK 2014s 2014s Running tests/mp2_scs_n2/mp2_scs_n2 2014s 2014s cleaning scratch 2014s copying input and verified output files 2014s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2014s 2032s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2032s OK 2032s 2032s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 2032s 2032s cleaning scratch 2032s copying input and verified output files 2032s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2032s 2071s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2071s OK 2071s 2071s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 2071s 2071s cleaning scratch 2071s copying input and verified output files 2071s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2071s 2082s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2082s OK 2082s 2082s Running tests/water/water_md 2082s 2082s cleaning scratch 2082s copying input and verified output files 2082s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2082s 2082s verifying nwout ...... skipped 2082s verifying test ....... completed 2082s 2082s Running tests/water/water_pme 2082s 2082s cleaning scratch 2082s copying input and verified output files 2082s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2082s 2083s verifying nwout ...... skipped 2083s verifying test ....... completed 2083s 2083s Running tests/pspw_md/pspw_md 2083s 2083s cleaning scratch 2083s copying input and verified output files 2083s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2083s 2098s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2098s OK 2098s 2098s Running tests/cosmo_h3co/cosmo_h3co 2098s 2098s cleaning scratch 2098s copying input and verified output files 2098s running nwchem (/usr/bin/nwchem.openmpi) with 1 processors 2098s 2109s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2109s OK 2109s 2109s Failed 2109s autopkgtest [20:29:42]: test testsuite-openmpi: -----------------------] 2110s testsuite-openmpi FAIL non-zero exit status 2 2110s autopkgtest [20:29:43]: test testsuite-openmpi: - - - - - - - - - - results - - - - - - - - - - 2110s autopkgtest [20:29:43]: test testsuite-mpich: preparing testbed 2168s autopkgtest [20:30:41]: testbed dpkg architecture: amd64 2168s autopkgtest [20:30:41]: testbed apt version: 2.9.8 2168s autopkgtest [20:30:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2168s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 2168s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.7 kB] 2168s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1005 kB] 2168s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 2168s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 2168s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [172 kB] 2168s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 2168s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 2168s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [301 kB] 2168s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [819 kB] 2169s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 2169s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 2169s Fetched 2636 kB in 0s (8249 kB/s) 2169s Reading package lists... 2170s Reading package lists... 2170s Building dependency tree... 2170s Reading state information... 2170s Calculating upgrade... 2171s The following NEW packages will be installed: 2171s python3.13-gdbm 2171s The following packages will be upgraded: 2171s debianutils libftdi1-2 libnvme1t64 python3-gdbm 2171s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 2171s Need to get 252 kB of archives. 2171s After this operation, 104 kB of additional disk space will be used. 2171s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 debianutils amd64 5.21 [92.9 kB] 2171s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 2171s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 2171s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-7build1 [30.2 kB] 2171s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11-2 [88.7 kB] 2171s Fetched 252 kB in 0s (5154 kB/s) 2171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 2171s Preparing to unpack .../debianutils_5.21_amd64.deb ... 2171s Unpacking debianutils (5.21) over (5.20) ... 2171s Setting up debianutils (5.21) ... 2171s Selecting previously unselected package python3.13-gdbm. 2171s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 2171s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 2171s Unpacking python3.13-gdbm (3.13.0-2) ... 2171s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 2171s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 2171s Preparing to unpack .../libftdi1-2_1.5-7build1_amd64.deb ... 2171s Unpacking libftdi1-2:amd64 (1.5-7build1) over (1.5-7) ... 2171s Preparing to unpack .../libnvme1t64_1.11-2_amd64.deb ... 2171s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 2172s Setting up libftdi1-2:amd64 (1.5-7build1) ... 2172s Setting up libnvme1t64 (1.11-2) ... 2172s Setting up python3.13-gdbm (3.13.0-2) ... 2172s Setting up python3-gdbm:amd64 (3.12.7-1) ... 2172s Processing triggers for man-db (2.13.0-1) ... 2173s Processing triggers for libc-bin (2.40-1ubuntu3) ... 2173s Reading package lists... 2173s Building dependency tree... 2173s Reading state information... 2173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2173s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 2173s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 2173s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 2173s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 2175s Reading package lists... 2175s Reading package lists... 2175s Building dependency tree... 2175s Reading state information... 2175s Calculating upgrade... 2175s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2175s Reading package lists... 2175s Building dependency tree... 2175s Reading state information... 2176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2181s Reading package lists... 2181s Building dependency tree... 2181s Reading state information... 2181s Starting pkgProblemResolver with broken count: 0 2181s Starting 2 pkgProblemResolver with broken count: 0 2181s Done 2182s The following additional packages will be installed: 2182s hwloc-nox libamd-comgr2 libamdhip64-5 libblas3 libdrm-amdgpu1 2182s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 2182s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 2182s libibumad3 liblapack3 libllvm17t64 libmpich12 libmunge2 libopenmpi3t64 2182s libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 2182s libscalapack-mpich2.2 libslurm41t64 libucx0 libxnvctrl0 mpi-default-bin 2182s mpich nwchem-data nwchem-mpich ocl-icd-libopencl1 openmpi-bin openmpi-common 2182s Suggested packages: 2182s libhwloc-contrib-plugins scalapack-doc mpich-doc opencl-icd gfortran 2182s | fortran-compiler 2182s Recommended packages: 2182s libmpich-dev 2182s The following NEW packages will be installed: 2182s autopkgtest-satdep hwloc-nox libamd-comgr2 libamdhip64-5 libblas3 2182s libdrm-amdgpu1 libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 2182s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 2182s libibumad3 liblapack3 libllvm17t64 libmpich12 libmunge2 libopenmpi3t64 2182s libpciaccess0 libpmix2t64 libpsm-infinipath1 libpsm2-2 librdmacm1t64 2182s libscalapack-mpich2.2 libslurm41t64 libucx0 libxnvctrl0 mpi-default-bin 2182s mpich nwchem-data nwchem-mpich ocl-icd-libopencl1 openmpi-bin openmpi-common 2182s 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. 2182s Need to get 94.5 MB/94.5 MB of archives. 2182s After this operation, 428 MB of additional disk space will be used. 2182s Get:1 /tmp/autopkgtest.Eynoru/3-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [764 B] 2182s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 2182s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 2182s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 2182s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 2182s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 2182s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 2182s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 2182s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 2182s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 2182s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 2182s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 2182s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 2182s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 2182s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 2182s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 2182s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 2182s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 2182s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 2182s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 2182s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 2182s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 2182s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 2182s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 2182s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 2182s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 2182s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 2182s Get:28 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-common all 5.0.5-6 [95.6 kB] 2182s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-bin amd64 5.0.5-6 [169 kB] 2182s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 2182s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpich12 amd64 4.2.0-14 [10.5 MB] 2182s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-mpich2.2 amd64 2.2.1-3.1ubuntu2 [1751 kB] 2183s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libslurm41t64 amd64 24.05.4-1 [679 kB] 2183s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 nwchem-data all 7.2.2-2build1 [6082 kB] 2183s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 hwloc-nox amd64 2.11.2-1 [251 kB] 2183s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpich amd64 4.2.0-14 [201 kB] 2183s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 nwchem-mpich amd64 7.2.2-2build1 [14.7 MB] 2183s Fetched 94.5 MB in 1s (121 MB/s) 2183s Selecting previously unselected package libllvm17t64:amd64. 2183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 2183s Preparing to unpack .../00-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 2183s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 2184s Selecting previously unselected package libamd-comgr2:amd64. 2184s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 2184s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 2184s Selecting previously unselected package libdrm-amdgpu1:amd64. 2184s Preparing to unpack .../02-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 2184s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 2184s Selecting previously unselected package libhsakmt1:amd64. 2184s Preparing to unpack .../03-libhsakmt1_5.7.0-1build1_amd64.deb ... 2184s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 2184s Selecting previously unselected package libhsa-runtime64-1. 2184s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 2184s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 2184s Selecting previously unselected package libamdhip64-5. 2184s Preparing to unpack .../05-libamdhip64-5_5.7.1-5_amd64.deb ... 2184s Unpacking libamdhip64-5 (5.7.1-5) ... 2184s Selecting previously unselected package libblas3:amd64. 2184s Preparing to unpack .../06-libblas3_3.12.0-3build2_amd64.deb ... 2184s Unpacking libblas3:amd64 (3.12.0-3build2) ... 2184s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 2184s Preparing to unpack .../07-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 2184s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 2184s Selecting previously unselected package libpsm-infinipath1. 2184s Preparing to unpack .../08-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 2184s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 2184s Selecting previously unselected package libpsm2-2. 2184s Preparing to unpack .../09-libpsm2-2_11.2.185-2.1_amd64.deb ... 2184s Unpacking libpsm2-2 (11.2.185-2.1) ... 2184s Selecting previously unselected package librdmacm1t64:amd64. 2184s Preparing to unpack .../10-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 2184s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 2184s Selecting previously unselected package libfabric1:amd64. 2184s Preparing to unpack .../11-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 2184s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 2184s Selecting previously unselected package libgfortran5:amd64. 2184s Preparing to unpack .../12-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 2184s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 2184s Selecting previously unselected package libgomp1:amd64. 2184s Preparing to unpack .../13-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 2184s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 2184s Selecting previously unselected package libhwloc15:amd64. 2184s Preparing to unpack .../14-libhwloc15_2.11.2-1_amd64.deb ... 2184s Unpacking libhwloc15:amd64 (2.11.2-1) ... 2184s Selecting previously unselected package liblapack3:amd64. 2184s Preparing to unpack .../15-liblapack3_3.12.0-3build2_amd64.deb ... 2184s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 2184s Selecting previously unselected package libmunge2:amd64. 2184s Preparing to unpack .../16-libmunge2_0.5.15-4build1_amd64.deb ... 2184s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 2184s Selecting previously unselected package libpciaccess0:amd64. 2184s Preparing to unpack .../17-libpciaccess0_0.17-3build1_amd64.deb ... 2184s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 2185s Selecting previously unselected package libxnvctrl0:amd64. 2185s Preparing to unpack .../18-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 2185s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 2185s Selecting previously unselected package ocl-icd-libopencl1:amd64. 2185s Preparing to unpack .../19-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 2185s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 2185s Selecting previously unselected package libhwloc-plugins:amd64. 2185s Preparing to unpack .../20-libhwloc-plugins_2.11.2-1_amd64.deb ... 2185s Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... 2185s Selecting previously unselected package libpmix2t64:amd64. 2185s Preparing to unpack .../21-libpmix2t64_5.0.3-2_amd64.deb ... 2185s Unpacking libpmix2t64:amd64 (5.0.3-2) ... 2185s Selecting previously unselected package libibumad3:amd64. 2185s Preparing to unpack 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... 2185s Selecting previously unselected package mpi-default-bin. 2185s Preparing to unpack .../28-mpi-default-bin_1.17_amd64.deb ... 2185s Unpacking mpi-default-bin (1.17) ... 2185s Selecting previously unselected package libmpich12:amd64. 2185s Preparing to unpack .../29-libmpich12_4.2.0-14_amd64.deb ... 2185s Unpacking libmpich12:amd64 (4.2.0-14) ... 2185s Selecting previously unselected package libscalapack-mpich2.2:amd64. 2185s Preparing to unpack .../30-libscalapack-mpich2.2_2.2.1-3.1ubuntu2_amd64.deb ... 2185s Unpacking libscalapack-mpich2.2:amd64 (2.2.1-3.1ubuntu2) ... 2185s Selecting previously unselected package libslurm41t64. 2185s Preparing to unpack .../31-libslurm41t64_24.05.4-1_amd64.deb ... 2185s Unpacking libslurm41t64 (24.05.4-1) ... 2185s Selecting previously unselected package nwchem-data. 2185s Preparing to unpack .../32-nwchem-data_7.2.2-2build1_all.deb ... 2185s Unpacking nwchem-data (7.2.2-2build1) ... 2186s Selecting previously unselected package hwloc-nox. 2186s Preparing to unpack .../33-hwloc-nox_2.11.2-1_amd64.deb ... 2186s Unpacking hwloc-nox (2.11.2-1) ... 2186s Selecting previously unselected package mpich. 2186s Preparing to unpack .../34-mpich_4.2.0-14_amd64.deb ... 2186s Unpacking mpich (4.2.0-14) ... 2186s Selecting previously unselected package nwchem-mpich. 2186s Preparing to unpack .../35-nwchem-mpich_7.2.2-2build1_amd64.deb ... 2186s Unpacking nwchem-mpich (7.2.2-2build1) ... 2186s Selecting previously unselected package autopkgtest-satdep. 2186s Preparing to unpack .../36-3-autopkgtest-satdep.deb ... 2186s Unpacking autopkgtest-satdep (0) ... 2186s Setting up libpciaccess0:amd64 (0.17-3build1) ... 2186s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 2186s Setting up nwchem-data (7.2.2-2build1) ... 2186s Setting up libibumad3:amd64 (52.0-2ubuntu1) ... 2186s Setting up libibmad5:amd64 (52.0-2ubuntu1) ... 2186s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 2186s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 2186s Setting up libblas3:amd64 (3.12.0-3build2) ... 2186s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 2186s Setting up libmunge2:amd64 (0.5.15-4build1) ... 2186s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 2186s Setting up libhwloc15:amd64 (2.11.2-1) ... 2186s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 2186s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 2186s Setting up libpsm2-2 (11.2.185-2.1) ... 2186s Setting up openmpi-common (5.0.5-6) ... 2186s Setting up librdmacm1t64:amd64 (52.0-2ubuntu1) ... 2186s Setting up libslurm41t64 (24.05.4-1) ... 2186s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 2186s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 2186s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 2186s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 2186s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 2186s Setting up liblapack3:amd64 (3.12.0-3build2) ... 2186s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 2186s Setting up hwloc-nox (2.11.2-1) ... 2186s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 2186s Setting up libpmix2t64:amd64 (5.0.3-2) ... 2186s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 2186s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 2186s Setting up libamdhip64-5 (5.7.1-5) ... 2186s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 2186s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 2186s Setting up libmpich12:amd64 (4.2.0-14) ... 2186s Setting up openmpi-bin (5.0.5-6) ... 2186s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 2186s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 2186s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 2186s Setting up mpich (4.2.0-14) ... 2186s Setting up mpi-default-bin (1.17) ... 2186s Setting up libscalapack-mpich2.2:amd64 (2.2.1-3.1ubuntu2) ... 2186s Setting up nwchem-mpich (7.2.2-2build1) ... 2186s Setting up autopkgtest-satdep (0) ... 2186s Processing triggers for man-db (2.13.0-1) ... 2186s Processing triggers for libc-bin (2.40-1ubuntu3) ... 2189s (Reading database ... 77660 files and directories currently installed.) 2189s Removing autopkgtest-satdep (0) ... 2235s autopkgtest [20:31:48]: test testsuite-mpich: [----------------------- 2235s ===== TESTING NWCHEM BUILD FOR mpich ===== 2235s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2235s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 2235s 2235s 2235s Running tests/dft_he2+/dft_he2+ 2235s 2235s cleaning scratch 2235s copying input and verified output files 2235s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2235s 2250s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2250s OK 2250s 2250s Running tests/qmmm_grad0/qmmm_grad0 2250s 2250s cleaning scratch 2250s copying input and verified output files 2250s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2250s 2255s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2255s OK 2255s 2255s Running tests/auh2o/auh2o 2255s 2255s cleaning scratch 2255s copying input and verified output files 2255s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2255s 2258s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2258s OK 2258s 2258s Running tests/autosym/autosym 2258s 2258s cleaning scratch 2258s copying input and verified output files 2258s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2258s 2271s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2271s OK 2271s 2271s Running tests/h2mp2/h2mp2 2271s 2271s cleaning scratch 2271s copying input and verified output files 2271s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2271s 2274s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2274s OK 2274s 2274s Running tests/h2o/h2o 2274s 2274s cleaning scratch 2274s copying input and verified output files 2274s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2274s 2276s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2276s OK 2276s 2276s Running tests/hess_h2o/hess_h2o 2276s 2276s cleaning scratch 2276s copying input and verified output files 2276s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2276s 2283s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2283s OK 2283s 2283s Running tests/prop_h2o/prop_h2o 2283s 2283s cleaning scratch 2283s copying input and verified output files 2283s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2283s 2287s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2287s OK 2287s 2287s Running tests/geom_zmatrix/geom_zmatrix 2287s 2287s cleaning scratch 2287s copying input and verified output files 2287s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2287s 2291s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2291s OK 2291s 2291s Running tests/rimp2_ne/rimp2_ne 2291s 2291s cleaning scratch 2291s copying input and verified output files 2291s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2291s 2295s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2295s OK 2295s 2295s Running tests/small_intchk/small_intchk 2295s 2295s cleaning scratch 2295s copying input and verified output files 2295s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2295s 2303s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2303s OK 2303s 2303s Running tests/tagcheck/tagcheck 2303s 2303s cleaning scratch 2303s copying input and verified output files 2303s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2303s 2306s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2306s OK 2306s 2306s Running tests/testtab/testtab 2306s 2306s cleaning scratch 2306s copying input and verified output files 2306s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2306s 2308s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2308s OK 2308s 2308s Running tests/h2o_dk/h2o_dk 2308s 2308s cleaning scratch 2308s copying input and verified output files 2308s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2308s 2317s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2317s OK 2317s 2317s Running tests/cosmo_h2o/cosmo_h2o 2317s 2317s cleaning scratch 2317s copying input and verified output files 2317s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2317s 2319s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2319s OK 2319s 2319s Running tests/ch5n_nbo/ch5n_nbo 2319s 2319s cleaning scratch 2319s copying input and verified output files 2319s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2319s 2320s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2320s OK 2320s 2320s Running tests/h2s_finite/h2s_finite 2320s 2320s cleaning scratch 2320s copying input and verified output files 2320s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2320s 2325s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2325s OK 2325s 2325s Running tests/pyqa3/pyqa3 2325s 2325s cleaning scratch 2325s copying input and verified output files 2325s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2325s 2329s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2329s OK 2329s 2329s Running tests/startag/startag 2329s 2329s cleaning scratch 2329s copying input and verified output files 2329s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2329s 2331s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2331s OK 2331s 2331s Running tests/esp/esp 2331s 2331s cleaning scratch 2331s copying input and verified output files 2331s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2331s 2334s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2334s ESP charges match 2334s 2334s 2334s Running tests/esp_uhf/esp_uhf 2334s 2334s cleaning scratch 2334s copying input and verified output files 2334s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2334s 2338s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2338s ESP comparison failed 2338s --- esp_temp.ok.q 2024-11-16 20:33:31.543944777 +0000 2338s +++ esp_temp.q 2024-11-16 20:33:31.546944917 +0000 2338s @@ -1,10 +1,10 @@ 2338s 9 5 2338s - C -nan -nan -nan -nan -nan -nan -nan -nan 2338s - H -nan -nan -nan -nan -nan -nan -nan -nan 2338s - H -nan -nan -nan -nan -nan -nan -nan -nan 2338s - H -nan -nan -nan -nan -nan -nan -nan -nan 2338s - C -nan -nan -nan -nan -nan -nan -nan -nan 2338s - H -nan -nan -nan -nan -nan -nan -nan -nan 2338s - H -nan -nan -nan -nan -nan -nan -nan -nan 2338s - S -nan -nan -nan -nan -nan -nan -nan -nan 2338s - H -nan -nan -nan -nan -nan -nan -nan -nan 2338s + C nan nan nan nan nan nan nan nan 2338s + H nan nan nan nan nan nan nan nan 2338s + H nan nan nan nan nan nan nan nan 2338s + H nan nan nan nan nan nan nan nan 2338s + C nan nan nan nan nan nan nan nan 2338s + H nan nan nan nan nan nan nan nan 2338s + H nan nan nan nan nan nan nan nan 2338s + S nan nan nan nan nan nan nan nan 2338s + H nan nan nan nan nan nan nan nan 2338s 2338s Running tests/dft_bsse/dft_bsse 2338s 2338s cleaning scratch 2338s copying input and verified output files 2338s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2338s 2343s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2343s OK 2343s 2343s Running tests/dplot_dft/dplot_dft 2343s 2343s cleaning scratch 2343s copying input and verified output files 2343s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2343s 2344s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2344s OK 2344s 2344s Running tests/dft_meta/dft_meta 2344s 2344s cleaning scratch 2344s copying input and verified output files 2344s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2344s 2397s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2397s OK 2397s 2397s Running tests/dft_mpwb1khf/dft_mpwb1khf 2397s 2397s cleaning scratch 2397s copying input and verified output files 2397s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2397s 2401s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2401s OK 2401s 2401s Running tests/prop_uhf_h2o/prop_uhf_h2o 2401s 2401s cleaning scratch 2401s copying input and verified output files 2401s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2401s 2429s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2429s OK 2429s 2429s Running tests/et_zn_dimer/et_zn_dimer 2429s 2429s cleaning scratch 2429s copying input and verified output files 2429s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2429s 2452s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2452s OK 2452s 2452s Running tests/vectors_rotate/vectors_rotate 2452s 2452s cleaning scratch 2452s copying input and verified output files 2452s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2452s 2455s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2455s OK 2455s 2455s Running tests/sad_ch3hf/sad_ch3hf 2455s 2455s cleaning scratch 2455s copying input and verified output files 2455s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2455s 2472s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2472s OK 2472s 2472s Running tests/band/band 2472s 2472s cleaning scratch 2472s copying input and verified output files 2472s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2472s 2480s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2480s OK 2480s 2480s Running tests/pspw/pspw 2480s 2480s cleaning scratch 2480s copying input and verified output files 2480s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2480s 2493s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2493s OK 2493s 2493s Running tests/pspw_stress/pspw_stress 2493s 2493s cleaning scratch 2493s copying input and verified output files 2493s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2493s 2511s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2511s OK 2511s 2511s Running tests/mcscf_ch2/mcscf_ch2 2511s 2511s cleaning scratch 2511s copying input and verified output files 2511s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2511s 2541s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2541s OK 2541s 2541s Running tests/dft_li2freq/dft_li2freq 2541s 2541s cleaning scratch 2541s copying input and verified output files 2541s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2541s 2599s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2599s OK 2599s 2599s Running tests/n2_ccsd/n2_ccsd 2599s 2599s cleaning scratch 2599s copying input and verified output files 2599s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2599s 2647s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2647s OK 2647s 2647s Running tests/tce_ccsd_t_h2o/tce_ccsd_t_h2o 2647s 2647s cleaning scratch 2647s copying input and verified output files 2647s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2647s 2651s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2651s OK 2651s 2651s Running tests/tddft_h2o/tddft_h2o 2651s 2651s cleaning scratch 2651s copying input and verified output files 2651s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2651s 2687s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 2687s OK 2687s 2687s Running tests/rt_tddft_dimer_charge/rt_tddft_dimer_charge 2687s 2687s cleaning scratch 2687s copying input and verified output files 2687s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 2687s 3001s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3001s OK 3001s 3001s Running tests/tce_eaccsd_ozone/tce_eaccsd_ozone 3001s 3001s cleaning scratch 3001s copying input and verified output files 3001s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3001s 3019s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3019s OK 3019s 3019s Running tests/tce_ipccsd_f2/tce_ipccsd_f2 3019s 3019s cleaning scratch 3019s copying input and verified output files 3019s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3019s 3023s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3023s OK 3023s 3023s Running tests/tce_hyperpolar_ccsd_small/tce_hyperpolar_ccsd_small 3023s 3023s cleaning scratch 3023s copying input and verified output files 3023s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3023s 3135s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3135s OK 3135s 3135s Running tests/mp2_scs_n2/mp2_scs_n2 3135s 3135s cleaning scratch 3135s copying input and verified output files 3135s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3135s 3154s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3154s OK 3154s 3154s Running tests/tddftgrad_n2_uks/tddftgrad_n2_uks 3154s 3154s cleaning scratch 3154s copying input and verified output files 3154s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3154s 3194s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3194s OK 3194s 3194s Running tests/tddftgrad_ch2o/tddftgrad_ch2o 3194s 3194s cleaning scratch 3194s copying input and verified output files 3194s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3194s 3205s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3205s OK 3205s 3205s Running tests/water/water_md 3205s 3205s cleaning scratch 3205s copying input and verified output files 3205s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3205s 3206s verifying nwout ...... skipped 3206s verifying test ....... completed 3206s 3206s Running tests/water/water_pme 3206s 3206s cleaning scratch 3206s copying input and verified output files 3206s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3206s 3206s verifying nwout ...... skipped 3206s verifying test ....... completed 3206s 3206s Running tests/pspw_md/pspw_md 3206s 3206s cleaning scratch 3206s copying input and verified output files 3206s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3206s 3221s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3221s OK 3221s 3221s Running tests/cosmo_h3co/cosmo_h3co 3221s 3221s cleaning scratch 3221s copying input and verified output files 3221s running nwchem (/usr/bin/nwchem.mpich) with 1 processors 3221s 3232s verifying output ... [0] ARMCI Warning: Freed 1 leaked allocations 3232s OK 3232s 3232s Failed 3232s autopkgtest [20:48:25]: test testsuite-mpich: -----------------------] 3233s testsuite-mpich FAIL non-zero exit status 1 3233s autopkgtest [20:48:26]: test testsuite-mpich: - - - - - - - - - - results - - - - - - - - - - 3233s autopkgtest [20:48:26]: @@@@@@@@@@@@@@@@@@@@ summary 3233s testsuite.sh FAIL non-zero exit status 1 3233s testsuite-openmpi FAIL non-zero exit status 2 3233s testsuite-mpich FAIL non-zero exit status 1 3243s nova [W] Skipping flock for amd64 3243s Creating nova instance adt-plucky-amd64-nwchem-20241116-195433-juju-7f2275-prod-proposed-migration-environment-15-5fe1667b-54fc-423e-a266-495eec56b8c2 from image adt/ubuntu-plucky-amd64-server-20241116.img (UUID b32b57e2-04e1-4e84-814c-fcac83d3276b)... 3243s nova [W] Skipping flock for amd64 3243s Creating nova instance adt-plucky-amd64-nwchem-20241116-195433-juju-7f2275-prod-proposed-migration-environment-15-5fe1667b-54fc-423e-a266-495eec56b8c2 from image adt/ubuntu-plucky-amd64-server-20241116.img (UUID b32b57e2-04e1-4e84-814c-fcac83d3276b)... 3243s nova [W] Skipping flock for amd64 3243s Creating nova instance adt-plucky-amd64-nwchem-20241116-195433-juju-7f2275-prod-proposed-migration-environment-15-5fe1667b-54fc-423e-a266-495eec56b8c2 from image adt/ubuntu-plucky-amd64-server-20241116.img (UUID b32b57e2-04e1-4e84-814c-fcac83d3276b)...