0s autopkgtest [11:47:09]: starting date and time: 2025-02-19 11:47:09+0000
  0s autopkgtest [11:47:09]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [11:47:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vzg3s3cv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:last-align --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=last-align/1609-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-19.secgroup --name adt-plucky-amd64-nanook-20250219-114708-juju-7f2275-prod-proposed-migration-environment-2-ba8036f4-1db5-4ad3-9bef-569e9f939cf2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 70s autopkgtest [11:48:19]: testbed dpkg architecture: amd64
 70s autopkgtest [11:48:19]: testbed apt version: 2.9.29
 71s autopkgtest [11:48:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 71s autopkgtest [11:48:20]: testbed release detected to be: None
 72s autopkgtest [11:48:21]: updating testbed package index (apt update)
 72s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
 73s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 73s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 73s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 73s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB]
 73s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB]
 73s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB]
 73s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
 73s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [101 kB]
 74s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [81.8 kB]
 74s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B]
 74s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B]
 74s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [265 kB]
 74s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [697 kB]
 74s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3128 B]
 74s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [11.5 kB]
 74s Fetched 2124 kB in 2s (1095 kB/s)
 74s Reading package lists...
 75s Reading package lists...
 75s Building dependency tree...
 75s Reading state information...
 76s Calculating upgrade...
 76s The following NEW packages will be installed:
 76s   libapt-pkg7.0
 76s The following packages will be upgraded:
 76s   apt apt-utils iproute2 liblsof0 libp11-kit0 lsof rsyslog
 76s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 76s Need to get 5234 kB of archives.
 76s After this operation, 4074 kB of additional disk space will be used.
 76s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.30 [1131 kB]
 76s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.30 [1434 kB]
 76s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.30 [222 kB]
 76s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 iproute2 amd64 6.13.0-1ubuntu1 [1277 kB]
 77s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit0 amd64 0.25.5-2ubuntu3 [311 kB]
 77s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu1 [555 kB]
 77s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 lsof amd64 4.99.4+dfsg-1 [245 kB]
 77s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsof0 amd64 4.99.4+dfsg-1 [59.6 kB]
 77s Preconfiguring packages ...
 77s Fetched 5234 kB in 1s (6871 kB/s)
 77s Selecting previously unselected package libapt-pkg7.0:amd64.
 77s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108925 files and directories currently installed.)
 77s Preparing to unpack .../libapt-pkg7.0_2.9.30_amd64.deb ...
 77s Unpacking libapt-pkg7.0:amd64 (2.9.30) ...
 77s Setting up libapt-pkg7.0:amd64 (2.9.30) ...
 77s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108974 files and directories currently installed.)
 77s Preparing to unpack .../archives/apt_2.9.30_amd64.deb ...
 77s Unpacking apt (2.9.30) over (2.9.29) ...
 77s Setting up apt (2.9.30) ...
 78s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108974 files and directories currently installed.)
 78s Preparing to unpack .../0-apt-utils_2.9.30_amd64.deb ...
 78s Unpacking apt-utils (2.9.30) over (2.9.29) ...
 78s Preparing to unpack .../1-iproute2_6.13.0-1ubuntu1_amd64.deb ...
 78s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
 78s Preparing to unpack .../2-libp11-kit0_0.25.5-2ubuntu3_amd64.deb ...
 78s Unpacking libp11-kit0:amd64 (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ...
 78s Preparing to unpack .../3-rsyslog_8.2412.0-2ubuntu1_amd64.deb ...
 78s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ...
 79s Preparing to unpack .../4-lsof_4.99.4+dfsg-1_amd64.deb ...
 79s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 79s Preparing to unpack .../5-liblsof0_4.99.4+dfsg-1_amd64.deb ...
 79s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 79s Setting up apt-utils (2.9.30) ...
 79s Setting up liblsof0 (4.99.4+dfsg-1) ...
 79s Setting up iproute2 (6.13.0-1ubuntu1) ...
 79s Setting up rsyslog (8.2412.0-2ubuntu1) ...
 79s info: The user `syslog' is already a member of `adm'.
 80s Setting up libp11-kit0:amd64 (0.25.5-2ubuntu3) ...
 80s Setting up lsof (4.99.4+dfsg-1) ...
 80s Processing triggers for man-db (2.13.0-1) ...
 81s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 82s Reading package lists...
 83s Building dependency tree...
 83s Reading state information...
 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 83s autopkgtest [11:48:32]: upgrading testbed (apt dist-upgrade and autopurge)
 83s Reading package lists...
 84s Building dependency tree...
 84s Reading state information...
 84s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 84s Starting 2 pkgProblemResolver with broken count: 0
 84s Done
 85s Entering ResolveByKeep
 85s 
 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 85s Reading package lists...
 85s Building dependency tree...
 85s Reading state information...
 86s Starting pkgProblemResolver with broken count: 0
 86s Starting 2 pkgProblemResolver with broken count: 0
 86s Done
 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 86s autopkgtest [11:48:35]: rebooting testbed after setup commands that affected boot
110s autopkgtest [11:48:59]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 16:02:16 UTC 2025
114s autopkgtest [11:49:03]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook
118s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (dsc) [2220 B]
118s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (tar) [95.2 kB]
118s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (diff) [1818 kB]
118s gpgv: Signature made Wed Dec 18 14:21:48 2024 UTC
118s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
118s gpgv:                issuer "emollier@debian.org"
118s gpgv: Can't check signature: No public key
118s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-6.dsc: no acceptable signature found
119s autopkgtest [11:49:08]: testing package nanook version 1.33+dfsg-6
119s autopkgtest [11:49:08]: build not needed
120s autopkgtest [11:49:09]: test run-unit-test: preparing testbed
120s Reading package lists...
120s Building dependency tree...
120s Reading state information...
120s Starting pkgProblemResolver with broken count: 0
120s Starting 2 pkgProblemResolver with broken count: 0
120s Done
121s The following NEW packages will be installed:
121s   ca-certificates-java default-jre-headless fontconfig fontconfig-config
121s   fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common
121s   last-align libaec0 libapache-pom-java libblas3 libcairo2 libcommons-io-java
121s   libcommons-parent-java libdatrie1 libdeflate0 libfontconfig1 libgfortran5
121s   libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6
121s   libjbig0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblapack3 liblcms2-2 liblerc4
121s   libmpfi0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
121s   libpaper2 libpcsclite1 libpixman-1-0 libpotrace0 libptexenc1 libsharpyuv0
121s   libsm6 libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
121s   libthai0 libtiff6 libtk8.6 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
121s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64
121s   littler nanook nanook-examples openjdk-21-jre-headless r-base-core
121s   r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2
121s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-labeling
121s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
121s   r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
121s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
121s   r-cran-rcpp r-cran-reshape r-cran-rlang r-cran-scales r-cran-tibble
121s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr t1utils tex-common
121s   texlive-base texlive-binaries texlive-latex-base unzip x11-common xdg-utils
121s   zip
121s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded.
121s Need to get 168 MB of archives.
121s After this operation, 485 MB of additional disk space will be used.
121s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ca-certificates-java all 20240118 [11.6 kB]
121s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 java-common all 0.76 [6852 B]
121s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
121s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
121s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
121s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcsclite1 amd64 2.3.1-1 [26.6 kB]
121s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [46.4 MB]
124s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre-headless amd64 2:1.21-76 [3178 B]
124s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
124s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
124s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
124s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
124s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
124s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
124s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
124s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
124s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
124s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
124s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-tools amd64 1.14.5+repack-3 [401 kB]
124s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 last-align amd64 1609-1 [1686 kB]
124s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libapache-pom-java all 33-2 [5874 B]
124s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
124s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
124s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
124s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
124s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
125s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
125s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-parent-java all 56-1 [10.7 kB]
125s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-io-java all 2.18.0-1 [477 kB]
125s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
125s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
125s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB]
125s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB]
125s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
125s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
125s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
125s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
125s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB]
125s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
125s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
125s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
125s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
125s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
125s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB]
125s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB]
125s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB]
125s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
125s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
125s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB]
125s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB]
125s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
125s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
125s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB]
125s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
125s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
125s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB]
125s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
125s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
125s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
125s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
125s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
125s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
125s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
125s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
125s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
125s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB]
125s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
125s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2build1 [28.1 kB]
125s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
125s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
125s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
125s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB]
126s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
126s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
126s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB]
126s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
126s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB]
126s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
126s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
126s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
126s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB]
126s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
126s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB]
126s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-2-1 [4456 kB]
126s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
127s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
127s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
127s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB]
127s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB]
127s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
127s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
127s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
127s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
127s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
127s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
127s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
127s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
127s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
127s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
127s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
127s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
127s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
128s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB]
128s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
128s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
128s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
128s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape all 0.8.9-1 [168 kB]
128s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.18 [32.8 kB]
128s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB]
128s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB]
128s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20241115-1 [22.5 MB]
129s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20241115-1 [1260 kB]
129s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 nanook all 1.33+dfsg-6 [195 kB]
129s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 nanook-examples all 1.33+dfsg-6 [1814 kB]
129s Preconfiguring packages ...
129s Fetched 168 MB in 8s (20.5 MB/s)
129s Selecting previously unselected package ca-certificates-java.
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130s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ...
130s Unpacking ca-certificates-java (20240118) ...
130s Selecting previously unselected package java-common.
130s Preparing to unpack .../001-java-common_0.76_all.deb ...
130s Unpacking java-common (0.76) ...
130s Selecting previously unselected package liblcms2-2:amd64.
130s Preparing to unpack .../002-liblcms2-2_2.16-2_amd64.deb ...
130s Unpacking liblcms2-2:amd64 (2.16-2) ...
130s Selecting previously unselected package libjpeg-turbo8:amd64.
130s Preparing to unpack .../003-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
130s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
130s Selecting previously unselected package libjpeg8:amd64.
130s Preparing to unpack .../004-libjpeg8_8c-2ubuntu11_amd64.deb ...
130s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
130s Selecting previously unselected package libpcsclite1:amd64.
130s Preparing to unpack .../005-libpcsclite1_2.3.1-1_amd64.deb ...
130s Unpacking libpcsclite1:amd64 (2.3.1-1) ...
130s Selecting previously unselected package openjdk-21-jre-headless:amd64.
130s Preparing to unpack .../006-openjdk-21-jre-headless_21.0.6+7-1_amd64.deb ...
130s Unpacking openjdk-21-jre-headless:amd64 (21.0.6+7-1) ...
131s Selecting previously unselected package default-jre-headless.
131s Preparing to unpack .../007-default-jre-headless_2%3a1.21-76_amd64.deb ...
131s Unpacking default-jre-headless (2:1.21-76) ...
131s Selecting previously unselected package fonts-dejavu-mono.
131s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ...
131s Unpacking fonts-dejavu-mono (2.37-8) ...
131s Selecting previously unselected package fonts-dejavu-core.
131s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ...
131s Unpacking fonts-dejavu-core (2.37-8) ...
131s Selecting previously unselected package fontconfig-config.
131s Preparing to unpack .../010-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
131s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
131s Selecting previously unselected package libfontconfig1:amd64.
131s Preparing to unpack .../011-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
131s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
131s Selecting previously unselected package fontconfig.
131s Preparing to unpack .../012-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
131s Unpacking fontconfig (2.15.0-2ubuntu1) ...
131s Selecting previously unselected package fonts-lmodern.
131s Preparing to unpack .../013-fonts-lmodern_2.005-1_all.deb ...
131s Unpacking fonts-lmodern (2.005-1) ...
131s Selecting previously unselected package libaec0:amd64.
131s Preparing to unpack .../014-libaec0_1.1.3-1_amd64.deb ...
131s Unpacking libaec0:amd64 (1.1.3-1) ...
131s Selecting previously unselected package libsz2:amd64.
131s Preparing to unpack .../015-libsz2_1.1.3-1_amd64.deb ...
131s Unpacking libsz2:amd64 (1.1.3-1) ...
131s Selecting previously unselected package libhdf5-310:amd64.
131s Preparing to unpack .../016-libhdf5-310_1.14.5+repack-3_amd64.deb ...
131s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ...
131s Selecting previously unselected package libhdf5-hl-310:amd64.
131s Preparing to unpack .../017-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
131s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
131s Selecting previously unselected package hdf5-tools.
131s Preparing to unpack .../018-hdf5-tools_1.14.5+repack-3_amd64.deb ...
131s Unpacking hdf5-tools (1.14.5+repack-3) ...
131s Selecting previously unselected package last-align.
131s Preparing to unpack .../019-last-align_1609-1_amd64.deb ...
131s Unpacking last-align (1609-1) ...
131s Selecting previously unselected package libapache-pom-java.
131s Preparing to unpack .../020-libapache-pom-java_33-2_all.deb ...
131s Unpacking libapache-pom-java (33-2) ...
131s Selecting previously unselected package libblas3:amd64.
131s Preparing to unpack .../021-libblas3_3.12.1-2_amd64.deb ...
131s Unpacking libblas3:amd64 (3.12.1-2) ...
131s Selecting previously unselected package libpixman-1-0:amd64.
131s Preparing to unpack .../022-libpixman-1-0_0.44.0-3_amd64.deb ...
131s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
131s Selecting previously unselected package libxcb-render0:amd64.
131s Preparing to unpack .../023-libxcb-render0_1.17.0-2_amd64.deb ...
131s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
131s Selecting previously unselected package libxcb-shm0:amd64.
132s Preparing to unpack .../024-libxcb-shm0_1.17.0-2_amd64.deb ...
132s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
132s Selecting previously unselected package libxrender1:amd64.
132s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
132s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
132s Selecting previously unselected package libcairo2:amd64.
132s Preparing to unpack .../026-libcairo2_1.18.2-2_amd64.deb ...
132s Unpacking libcairo2:amd64 (1.18.2-2) ...
132s Selecting previously unselected package libcommons-parent-java.
132s Preparing to unpack .../027-libcommons-parent-java_56-1_all.deb ...
132s Unpacking libcommons-parent-java (56-1) ...
132s Selecting previously unselected package libcommons-io-java.
132s Preparing to unpack .../028-libcommons-io-java_2.18.0-1_all.deb ...
132s Unpacking libcommons-io-java (2.18.0-1) ...
132s Selecting previously unselected package libdatrie1:amd64.
132s Preparing to unpack .../029-libdatrie1_0.2.13-3build1_amd64.deb ...
132s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
132s Selecting previously unselected package libdeflate0:amd64.
132s Preparing to unpack .../030-libdeflate0_1.23-1_amd64.deb ...
132s Unpacking libdeflate0:amd64 (1.23-1) ...
132s Selecting previously unselected package libgfortran5:amd64.
132s Preparing to unpack .../031-libgfortran5_15-20250213-1ubuntu1_amd64.deb ...
132s Unpacking libgfortran5:amd64 (15-20250213-1ubuntu1) ...
132s Selecting previously unselected package libgomp1:amd64.
132s Preparing to unpack .../032-libgomp1_15-20250213-1ubuntu1_amd64.deb ...
132s Unpacking libgomp1:amd64 (15-20250213-1ubuntu1) ...
132s Selecting previously unselected package libgraphite2-3:amd64.
132s Preparing to unpack .../033-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
132s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
132s Selecting previously unselected package libharfbuzz0b:amd64.
132s Preparing to unpack .../034-libharfbuzz0b_10.2.0-1_amd64.deb ...
132s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
132s Selecting previously unselected package x11-common.
132s Preparing to unpack .../035-x11-common_1%3a7.7+23ubuntu3_all.deb ...
132s Unpacking x11-common (1:7.7+23ubuntu3) ...
132s Selecting previously unselected package libice6:amd64.
132s Preparing to unpack .../036-libice6_2%3a1.1.1-1_amd64.deb ...
132s Unpacking libice6:amd64 (2:1.1.1-1) ...
132s Selecting previously unselected package libkpathsea6:amd64.
132s Preparing to unpack .../037-libkpathsea6_2024.20240313.70630+ds-5build2_amd64.deb ...
132s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-5build2) ...
132s Selecting previously unselected package liblapack3:amd64.
132s Preparing to unpack .../038-liblapack3_3.12.1-2_amd64.deb ...
132s Unpacking liblapack3:amd64 (3.12.1-2) ...
132s Selecting previously unselected package liblerc4:amd64.
132s Preparing to unpack .../039-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
132s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
132s Selecting previously unselected package libmpfi0:amd64.
132s Preparing to unpack .../040-libmpfi0_1.5.4+ds-4_amd64.deb ...
132s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ...
132s Selecting previously unselected package libthai-data.
132s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ...
132s Unpacking libthai-data (0.1.29-2build1) ...
132s Selecting previously unselected package libthai0:amd64.
132s Preparing to unpack .../042-libthai0_0.1.29-2build1_amd64.deb ...
132s Unpacking libthai0:amd64 (0.1.29-2build1) ...
132s Selecting previously unselected package libpango-1.0-0:amd64.
132s Preparing to unpack .../043-libpango-1.0-0_1.56.1-1_amd64.deb ...
132s Unpacking libpango-1.0-0:amd64 (1.56.1-1) ...
132s Selecting previously unselected package libpangoft2-1.0-0:amd64.
132s Preparing to unpack .../044-libpangoft2-1.0-0_1.56.1-1_amd64.deb ...
132s Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ...
132s Selecting previously unselected package libpangocairo-1.0-0:amd64.
132s Preparing to unpack .../045-libpangocairo-1.0-0_1.56.1-1_amd64.deb ...
132s Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ...
132s Selecting previously unselected package libpaper2:amd64.
132s Preparing to unpack .../046-libpaper2_2.2.5-0.3_amd64.deb ...
132s Unpacking libpaper2:amd64 (2.2.5-0.3) ...
132s Selecting previously unselected package libpaper-utils.
132s Preparing to unpack .../047-libpaper-utils_2.2.5-0.3_amd64.deb ...
132s Unpacking libpaper-utils (2.2.5-0.3) ...
132s Selecting previously unselected package libpotrace0:amd64.
132s Preparing to unpack .../048-libpotrace0_1.16-2build1_amd64.deb ...
132s Unpacking libpotrace0:amd64 (1.16-2build1) ...
132s Selecting previously unselected package libptexenc1:amd64.
132s Preparing to unpack .../049-libptexenc1_2024.20240313.70630+ds-5build2_amd64.deb ...
132s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ...
132s Selecting previously unselected package libsharpyuv0:amd64.
132s Preparing to unpack .../050-libsharpyuv0_1.5.0-0.1_amd64.deb ...
132s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
132s Selecting previously unselected package libsm6:amd64.
132s Preparing to unpack .../051-libsm6_2%3a1.2.4-1_amd64.deb ...
132s Unpacking libsm6:amd64 (2:1.2.4-1) ...
132s Selecting previously unselected package libsynctex2:amd64.
132s Preparing to unpack .../052-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ...
132s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ...
133s Selecting previously unselected package libtcl8.6:amd64.
133s Preparing to unpack .../053-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
133s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
133s Selecting previously unselected package libteckit0:amd64.
133s Preparing to unpack .../054-libteckit0_2.5.12+ds1-1_amd64.deb ...
133s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ...
133s Selecting previously unselected package libtexlua53-5:amd64.
133s Preparing to unpack .../055-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ...
133s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ...
133s Selecting previously unselected package libjbig0:amd64.
133s Preparing to unpack .../056-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
133s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
133s Selecting previously unselected package libwebp7:amd64.
133s Preparing to unpack .../057-libwebp7_1.5.0-0.1_amd64.deb ...
133s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
133s Selecting previously unselected package libtiff6:amd64.
133s Preparing to unpack .../058-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
133s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
133s Selecting previously unselected package libxft2:amd64.
133s Preparing to unpack .../059-libxft2_2.3.6-1build1_amd64.deb ...
133s Unpacking libxft2:amd64 (2.3.6-1build1) ...
133s Selecting previously unselected package libxss1:amd64.
133s Preparing to unpack .../060-libxss1_1%3a1.2.3-1build3_amd64.deb ...
133s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
133s Selecting previously unselected package libtk8.6:amd64.
133s Preparing to unpack .../061-libtk8.6_8.6.16-1_amd64.deb ...
133s Unpacking libtk8.6:amd64 (8.6.16-1) ...
133s Selecting previously unselected package libxt6t64:amd64.
133s Preparing to unpack .../062-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ...
133s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ...
133s Selecting previously unselected package libxmu6:amd64.
133s Preparing to unpack .../063-libxmu6_2%3a1.1.3-3build2_amd64.deb ...
133s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ...
133s Selecting previously unselected package libxpm4:amd64.
133s Preparing to unpack .../064-libxpm4_1%3a3.5.17-1build2_amd64.deb ...
133s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ...
133s Selecting previously unselected package libxaw7:amd64.
133s Preparing to unpack .../065-libxaw7_2%3a1.0.16-1_amd64.deb ...
133s Unpacking libxaw7:amd64 (2:1.0.16-1) ...
133s Selecting previously unselected package libxi6:amd64.
133s Preparing to unpack .../066-libxi6_2%3a1.8.2-1_amd64.deb ...
133s Unpacking libxi6:amd64 (2:1.8.2-1) ...
133s Selecting previously unselected package libzzip-0-13t64:amd64.
133s Preparing to unpack .../067-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_amd64.deb ...
133s Unpacking libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ...
133s Selecting previously unselected package zip.
133s Preparing to unpack .../068-zip_3.0-14ubuntu2_amd64.deb ...
133s Unpacking zip (3.0-14ubuntu2) ...
133s Selecting previously unselected package unzip.
133s Preparing to unpack .../069-unzip_6.0-28ubuntu6_amd64.deb ...
133s Unpacking unzip (6.0-28ubuntu6) ...
133s Selecting previously unselected package xdg-utils.
133s Preparing to unpack .../070-xdg-utils_1.2.1-2ubuntu1_all.deb ...
133s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
133s Selecting previously unselected package r-base-core.
133s Preparing to unpack .../071-r-base-core_4.4.2-1build1_amd64.deb ...
133s Unpacking r-base-core (4.4.2-1build1) ...
134s Selecting previously unselected package r-cran-littler.
134s Preparing to unpack .../072-r-cran-littler_0.3.20-2_amd64.deb ...
134s Unpacking r-cran-littler (0.3.20-2) ...
134s Selecting previously unselected package littler.
134s Preparing to unpack .../073-littler_0.3.20-2_all.deb ...
134s Unpacking littler (0.3.20-2) ...
134s Selecting previously unselected package r-cran-cli.
134s Preparing to unpack .../074-r-cran-cli_3.6.3-1_amd64.deb ...
134s Unpacking r-cran-cli (3.6.3-1) ...
134s Selecting previously unselected package r-cran-glue.
134s Preparing to unpack .../075-r-cran-glue_1.8.0-1_amd64.deb ...
134s Unpacking r-cran-glue (1.8.0-1) ...
134s Selecting previously unselected package r-cran-rlang.
134s Preparing to unpack .../076-r-cran-rlang_1.1.5-1_amd64.deb ...
134s Unpacking r-cran-rlang (1.1.5-1) ...
134s Selecting previously unselected package r-cran-lifecycle.
134s Preparing to unpack .../077-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
134s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
134s Selecting previously unselected package r-cran-gtable.
134s Preparing to unpack .../078-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
134s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
134s Selecting previously unselected package r-cran-isoband.
134s Preparing to unpack .../079-r-cran-isoband_0.2.7-1_amd64.deb ...
134s Unpacking r-cran-isoband (0.2.7-1) ...
134s Selecting previously unselected package r-cran-mass.
134s Preparing to unpack .../080-r-cran-mass_7.3-64-1_amd64.deb ...
134s Unpacking r-cran-mass (7.3-64-1) ...
134s Selecting previously unselected package r-cran-lattice.
134s Preparing to unpack .../081-r-cran-lattice_0.22-6-1_amd64.deb ...
134s Unpacking r-cran-lattice (0.22-6-1) ...
134s Selecting previously unselected package r-cran-nlme.
134s Preparing to unpack .../082-r-cran-nlme_3.1.167-1_amd64.deb ...
134s Unpacking r-cran-nlme (3.1.167-1) ...
134s Selecting previously unselected package r-cran-matrix.
134s Preparing to unpack .../083-r-cran-matrix_1.7-2-1_amd64.deb ...
134s Unpacking r-cran-matrix (1.7-2-1) ...
134s Selecting previously unselected package r-cran-mgcv.
134s Preparing to unpack .../084-r-cran-mgcv_1.9-1-1_amd64.deb ...
134s Unpacking r-cran-mgcv (1.9-1-1) ...
134s Selecting previously unselected package r-cran-farver.
134s Preparing to unpack .../085-r-cran-farver_2.1.2-1_amd64.deb ...
134s Unpacking r-cran-farver (2.1.2-1) ...
134s Selecting previously unselected package r-cran-labeling.
134s Preparing to unpack .../086-r-cran-labeling_0.4.3-1_all.deb ...
134s Unpacking r-cran-labeling (0.4.3-1) ...
134s Selecting previously unselected package r-cran-colorspace.
134s Preparing to unpack .../087-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ...
134s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
135s Selecting previously unselected package r-cran-munsell.
135s Preparing to unpack .../088-r-cran-munsell_0.5.1-1_all.deb ...
135s Unpacking r-cran-munsell (0.5.1-1) ...
135s Selecting previously unselected package r-cran-r6.
135s Preparing to unpack .../089-r-cran-r6_2.5.1-1_all.deb ...
135s Unpacking r-cran-r6 (2.5.1-1) ...
135s Selecting previously unselected package r-cran-rcolorbrewer.
135s Preparing to unpack .../090-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
135s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
135s Selecting previously unselected package r-cran-viridislite.
135s Preparing to unpack .../091-r-cran-viridislite_0.4.2-2_all.deb ...
135s Unpacking r-cran-viridislite (0.4.2-2) ...
135s Selecting previously unselected package r-cran-scales.
135s Preparing to unpack .../092-r-cran-scales_1.3.0-1_all.deb ...
135s Unpacking r-cran-scales (1.3.0-1) ...
135s Selecting previously unselected package r-cran-fansi.
135s Preparing to unpack .../093-r-cran-fansi_1.0.5-1_amd64.deb ...
135s Unpacking r-cran-fansi (1.0.5-1) ...
135s Selecting previously unselected package r-cran-magrittr.
135s Preparing to unpack .../094-r-cran-magrittr_2.0.3-1_amd64.deb ...
135s Unpacking r-cran-magrittr (2.0.3-1) ...
135s Selecting previously unselected package r-cran-utf8.
135s Preparing to unpack .../095-r-cran-utf8_1.2.4-1_amd64.deb ...
135s Unpacking r-cran-utf8 (1.2.4-1) ...
135s Selecting previously unselected package r-cran-vctrs.
135s Preparing to unpack .../096-r-cran-vctrs_0.6.5-1_amd64.deb ...
135s Unpacking r-cran-vctrs (0.6.5-1) ...
135s Selecting previously unselected package r-cran-pillar.
135s Preparing to unpack .../097-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
135s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
135s Selecting previously unselected package r-cran-pkgconfig.
135s Preparing to unpack .../098-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
135s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
135s Selecting previously unselected package r-cran-tibble.
135s Preparing to unpack .../099-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
135s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
135s Selecting previously unselected package r-cran-withr.
135s Preparing to unpack .../100-r-cran-withr_3.0.2+dfsg-1_all.deb ...
135s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
135s Selecting previously unselected package r-cran-ggplot2.
135s Preparing to unpack .../101-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
135s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
135s Selecting previously unselected package r-cran-gridextra.
135s Preparing to unpack .../102-r-cran-gridextra_2.3-3build1_all.deb ...
135s Unpacking r-cran-gridextra (2.3-3build1) ...
135s Selecting previously unselected package r-cran-pkgkitten.
135s Preparing to unpack .../103-r-cran-pkgkitten_0.2.4-1_all.deb ...
135s Unpacking r-cran-pkgkitten (0.2.4-1) ...
135s Selecting previously unselected package r-cran-rcpp.
135s Preparing to unpack .../104-r-cran-rcpp_1.0.14-1_amd64.deb ...
135s Unpacking r-cran-rcpp (1.0.14-1) ...
135s Selecting previously unselected package r-cran-plyr.
135s Preparing to unpack .../105-r-cran-plyr_1.8.9-1_amd64.deb ...
135s Unpacking r-cran-plyr (1.8.9-1) ...
135s Selecting previously unselected package r-cran-reshape.
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135s Unpacking r-cran-reshape (0.8.9-1) ...
135s Selecting previously unselected package tex-common.
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137s Selecting previously unselected package texlive-latex-base.
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137s Unpacking texlive-latex-base (2024.20241115-1) ...
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137s Unpacking nanook (1.33+dfsg-6) ...
137s Selecting previously unselected package nanook-examples.
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137s Unpacking nanook-examples (1.33+dfsg-6) ...
137s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
137s Setting up liblcms2-2:amd64 (2.16-2) ...
137s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
137s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
137s Setting up nanook-examples (1.33+dfsg-6) ...
137s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
137s Setting up libxpm4:amd64 (1:3.5.17-1build2) ...
137s Setting up libxi6:amd64 (2:1.8.2-1) ...
137s Setting up java-common (0.76) ...
137s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
137s Setting up libdatrie1:amd64 (0.2.13-3build1) ...
137s Setting up libxcb-render0:amd64 (1.17.0-2) ...
137s Setting up unzip (6.0-28ubuntu6) ...
137s Setting up x11-common (1:7.7+23ubuntu3) ...
137s Setting up libdeflate0:amd64 (1.23-1) ...
137s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
137s Setting up libgomp1:amd64 (15-20250213-1ubuntu1) ...
137s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
137s Setting up libaec0:amd64 (1.1.3-1) ...
137s Setting up last-align (1609-1) ...
137s Setting up tex-common (6.18) ...
137s update-language: texlive-base not installed and configured, doing nothing!
137s Setting up zip (3.0-14ubuntu2) ...
137s Setting up libblas3:amd64 (3.12.1-2) ...
138s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
138s Setting up libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ...
138s Setting up libteckit0:amd64 (2.5.12+ds1-1) ...
138s Setting up libapache-pom-java (33-2) ...
138s Setting up t1utils (1.41-4build3) ...
138s Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ...
138s Setting up fonts-dejavu-mono (2.37-8) ...
138s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
138s Setting up libmpfi0:amd64 (1.5.4+ds-4) ...
138s Setting up fonts-dejavu-core (2.37-8) ...
138s Setting up libpcsclite1:amd64 (2.3.1-1) ...
138s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
138s Setting up libkpathsea6:amd64 (2024.20240313.70630+ds-5build2) ...
138s Setting up libgfortran5:amd64 (15-20250213-1ubuntu1) ...
138s Setting up libwebp7:amd64 (1.5.0-0.1) ...
138s Setting up fonts-lmodern (2.005-1) ...
138s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
138s Setting up libthai-data (0.1.29-2build1) ...
138s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
138s Setting up libpaper2:amd64 (2.2.5-0.3) ...
138s Setting up ca-certificates-java (20240118) ...
138s No JRE found. Skipping Java certificates setup.
138s Setting up xdg-utils (1.2.1-2ubuntu1) ...
138s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
138s Setting up libsz2:amd64 (1.1.3-1) ...
138s Setting up libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ...
138s Setting up libpotrace0:amd64 (1.16-2build1) ...
138s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
138s Setting up libice6:amd64 (2:1.1.1-1) ...
138s Setting up liblapack3:amd64 (3.12.1-2) ...
138s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
138s Setting up openjdk-21-jre-headless:amd64 (21.0.6+7-1) ...
138s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode
138s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
138s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
138s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
138s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
138s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
138s Setting up libcommons-parent-java (56-1) ...
138s Setting up libpaper-utils (2.2.5-0.3) ...
138s Setting up libthai0:amd64 (0.1.29-2build1) ...
138s Setting up libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ...
138s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
138s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
138s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
138s Setting up libsm6:amd64 (2:1.2.4-1) ...
138s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
138s Setting up fontconfig (2.15.0-2ubuntu1) ...
140s Regenerating fonts cache... done.
140s Setting up libxft2:amd64 (2.3.6-1build1) ...
140s Setting up libcommons-io-java (2.18.0-1) ...
140s Setting up libtk8.6:amd64 (8.6.16-1) ...
140s Setting up libpango-1.0-0:amd64 (1.56.1-1) ...
140s Setting up libcairo2:amd64 (1.18.2-2) ...
140s Setting up hdf5-tools (1.14.5+repack-3) ...
140s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
140s Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ...
140s Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ...
140s Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
140s Setting up libxaw7:amd64 (2:1.0.16-1) ...
140s Setting up r-base-core (4.4.2-1build1) ...
140s Creating config file /etc/R/Renviron with new version
140s Setting up r-cran-labeling (0.4.3-1) ...
140s Setting up r-cran-lattice (0.22-6-1) ...
140s Setting up r-cran-nlme (3.1.167-1) ...
140s Setting up r-cran-farver (2.1.2-1) ...
140s Setting up r-cran-viridislite (0.4.2-2) ...
140s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
140s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
140s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
140s Setting up r-cran-r6 (2.5.1-1) ...
140s Setting up r-cran-pkgkitten (0.2.4-1) ...
140s Setting up texlive-base (2024.20241115-1) ...
141s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
141s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
141s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
141s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
142s Setting up r-cran-magrittr (2.0.3-1) ...
142s Setting up r-cran-littler (0.3.20-2) ...
142s Setting up r-cran-rcpp (1.0.14-1) ...
142s Setting up r-cran-rlang (1.1.5-1) ...
142s Setting up littler (0.3.20-2) ...
142s Setting up r-cran-withr (3.0.2+dfsg-1) ...
142s Setting up r-cran-fansi (1.0.5-1) ...
142s Setting up r-cran-mass (7.3-64-1) ...
142s Setting up r-cran-glue (1.8.0-1) ...
142s Setting up r-cran-cli (3.6.3-1) ...
142s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
142s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
142s Setting up r-cran-utf8 (1.2.4-1) ...
142s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
142s Setting up texlive-latex-base (2024.20241115-1) ...
142s Setting up r-cran-plyr (1.8.9-1) ...
142s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
142s Setting up r-cran-isoband (0.2.7-1) ...
142s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
142s Setting up r-cran-matrix (1.7-2-1) ...
142s Setting up r-cran-mgcv (1.9-1-1) ...
142s Setting up r-cran-vctrs (0.6.5-1) ...
142s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
142s Setting up r-cran-reshape (0.8.9-1) ...
142s Setting up r-cran-munsell (0.5.1-1) ...
142s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
142s Setting up r-cran-gridextra (2.3-3build1) ...
142s Setting up r-cran-scales (1.3.0-1) ...
142s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
142s Processing triggers for libc-bin (2.40-4ubuntu1) ...
142s Processing triggers for man-db (2.13.0-1) ...
143s Processing triggers for install-info (7.1.1-1) ...
143s Processing triggers for ca-certificates-java (20240118) ...
143s Adding debian:ACCVRAIZ1.pem
143s Adding debian:AC_RAIZ_FNMT-RCM.pem
144s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
144s Adding debian:ANF_Secure_Server_Root_CA.pem
144s Adding debian:Actalis_Authentication_Root_CA.pem
144s Adding debian:AffirmTrust_Commercial.pem
144s Adding debian:AffirmTrust_Networking.pem
144s Adding debian:AffirmTrust_Premium.pem
144s Adding debian:AffirmTrust_Premium_ECC.pem
144s Adding debian:Amazon_Root_CA_1.pem
144s Adding debian:Amazon_Root_CA_2.pem
144s Adding debian:Amazon_Root_CA_3.pem
144s Adding debian:Amazon_Root_CA_4.pem
144s Adding debian:Atos_TrustedRoot_2011.pem
144s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
144s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
144s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
144s Adding debian:BJCA_Global_Root_CA1.pem
144s Adding debian:BJCA_Global_Root_CA2.pem
144s Adding debian:Baltimore_CyberTrust_Root.pem
144s Adding debian:Buypass_Class_2_Root_CA.pem
144s Adding debian:Buypass_Class_3_Root_CA.pem
144s Adding debian:CA_Disig_Root_R2.pem
144s Adding debian:CFCA_EV_ROOT.pem
144s Adding debian:COMODO_Certification_Authority.pem
144s Adding debian:COMODO_ECC_Certification_Authority.pem
144s Adding debian:COMODO_RSA_Certification_Authority.pem
144s Adding debian:Certainly_Root_E1.pem
144s Adding debian:Certainly_Root_R1.pem
144s Adding debian:Certigna.pem
144s Adding debian:Certigna_Root_CA.pem
144s Adding debian:Certum_EC-384_CA.pem
144s Adding debian:Certum_Trusted_Network_CA.pem
144s Adding debian:Certum_Trusted_Network_CA_2.pem
144s Adding debian:Certum_Trusted_Root_CA.pem
144s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
144s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
144s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
144s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
144s Adding debian:Comodo_AAA_Services_root.pem
144s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
144s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
144s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
144s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
144s Adding debian:DigiCert_Assured_ID_Root_CA.pem
144s Adding debian:DigiCert_Assured_ID_Root_G2.pem
144s Adding debian:DigiCert_Assured_ID_Root_G3.pem
144s Adding debian:DigiCert_Global_Root_CA.pem
144s Adding debian:DigiCert_Global_Root_G2.pem
144s Adding debian:DigiCert_Global_Root_G3.pem
144s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
144s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
144s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
144s Adding debian:DigiCert_Trusted_Root_G4.pem
144s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
144s Adding debian:Entrust_Root_Certification_Authority.pem
144s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
144s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
144s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
144s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
144s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
144s Adding debian:GLOBALTRUST_2020.pem
144s Adding debian:GTS_Root_R1.pem
144s Adding debian:GTS_Root_R2.pem
144s Adding debian:GTS_Root_R3.pem
144s Adding debian:GTS_Root_R4.pem
144s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
144s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
144s Adding debian:GlobalSign_Root_CA.pem
144s Adding debian:GlobalSign_Root_CA_-_R3.pem
144s Adding debian:GlobalSign_Root_CA_-_R6.pem
144s Adding debian:GlobalSign_Root_E46.pem
144s Adding debian:GlobalSign_Root_R46.pem
144s Adding debian:Go_Daddy_Class_2_CA.pem
144s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
144s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
144s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
144s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
144s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
144s Adding debian:HiPKI_Root_CA_-_G1.pem
144s Adding debian:Hongkong_Post_Root_CA_3.pem
144s Adding debian:ISRG_Root_X1.pem
144s Adding debian:ISRG_Root_X2.pem
144s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
144s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
144s Adding debian:Izenpe.com.pem
144s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
144s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
144s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
144s Adding debian:NAVER_Global_Root_Certification_Authority.pem
144s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
144s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
144s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
144s Adding debian:QuoVadis_Root_CA_1_G3.pem
144s Adding debian:QuoVadis_Root_CA_2.pem
144s Adding debian:QuoVadis_Root_CA_2_G3.pem
144s Adding debian:QuoVadis_Root_CA_3.pem
144s Adding debian:QuoVadis_Root_CA_3_G3.pem
144s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
144s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
144s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
144s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
144s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
144s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
144s Adding debian:SZAFIR_ROOT_CA2.pem
144s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
144s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
144s Adding debian:SecureSign_RootCA11.pem
144s Adding debian:SecureSign_Root_CA12.pem
144s Adding debian:SecureSign_Root_CA14.pem
144s Adding debian:SecureSign_Root_CA15.pem
144s Adding debian:SecureTrust_CA.pem
144s Adding debian:Secure_Global_CA.pem
144s Adding debian:Security_Communication_ECC_RootCA1.pem
144s Adding debian:Security_Communication_RootCA2.pem
144s Adding debian:Security_Communication_RootCA3.pem
144s Adding debian:Starfield_Class_2_CA.pem
144s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
144s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
144s Adding debian:SwissSign_Gold_CA_-_G2.pem
144s Adding debian:SwissSign_Silver_CA_-_G2.pem
144s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
144s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
144s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
144s Adding debian:TWCA_CYBER_Root_CA.pem
144s Adding debian:TWCA_Global_Root_CA.pem
144s Adding debian:TWCA_Root_Certification_Authority.pem
144s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
144s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
144s Adding debian:TeliaSonera_Root_CA_v1.pem
144s Adding debian:Telia_Root_CA_v2.pem
144s Adding debian:TrustAsia_Global_Root_CA_G3.pem
144s Adding debian:TrustAsia_Global_Root_CA_G4.pem
144s Adding debian:Trustwave_Global_Certification_Authority.pem
144s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
144s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
144s Adding debian:TunTrust_Root_CA.pem
144s Adding debian:UCA_Extended_Validation_Root.pem
144s Adding debian:UCA_Global_G2_Root.pem
144s Adding debian:USERTrust_ECC_Certification_Authority.pem
144s Adding debian:USERTrust_RSA_Certification_Authority.pem
144s Adding debian:XRamp_Global_CA_Root.pem
144s Adding debian:certSIGN_ROOT_CA.pem
144s Adding debian:certSIGN_Root_CA_G2.pem
144s Adding debian:e-Szigno_Root_CA_2017.pem
144s Adding debian:ePKI_Root_Certification_Authority.pem
144s Adding debian:emSign_ECC_Root_CA_-_C3.pem
144s Adding debian:emSign_ECC_Root_CA_-_G3.pem
144s Adding debian:emSign_Root_CA_-_C1.pem
144s Adding debian:emSign_Root_CA_-_G1.pem
144s Adding debian:vTrus_ECC_Root_CA.pem
144s Adding debian:vTrus_Root_CA.pem
144s done.
144s Setting up default-jre-headless (2:1.21-76) ...
144s Setting up nanook (1.33+dfsg-6) ...
144s Processing triggers for tex-common (6.18) ...
144s Running updmap-sys. This may take some time... done.
144s Running mktexlsr /var/lib/texmf ... done.
144s Building format(s) --all.
166s 	This may take some time... done.
167s autopkgtest [11:49:56]: test run-unit-test: [-----------------------
173s 
173s NanoOK v1.33
173s 
173s Comments/bugs to: richard.leggett@earlham.ac.uk
173s Follow NanoOK on twitter: @NanoOK_Software
173s 
173s Scripts dir: /usr/share/nanook/bin
173s 
173s Checking dependencies
173s *** ERROR: Couldn't find Rscript - is R installed? ***
173s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
173s h5dump: Version 1.14.5
173s 
173s Making directory /tmp/autopkgtest.GS9eg3/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta
173s Checking FAST5 directory structure...
173s   Using pass/fail dirs: yes
173s       Using batch dirs: no
173s         Using barcodes: no
173s 
176s 
Processing [                                                  ] 0/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
176s 
176s DONE
176s 
176s NanoOK v1.33
176s 
176s Comments/bugs to: richard.leggett@earlham.ac.uk
176s Follow NanoOK on twitter: @NanoOK_Software
176s 
176s Scripts dir: /usr/share/nanook/bin
176s 
176s Checking dependencies
176s *** ERROR: Couldn't find Rscript - is R installed? ***
176s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
176s h5dump: Version 1.14.5
176s 
176s Making directory /tmp/autopkgtest.GS9eg3/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last
176s Making directory /tmp/autopkgtest.GS9eg3/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last
176s Checking FASTA/Q directory structure...
176s   Using pass/fail dirs: yes
176s       Using batch dirs: no
176s         Using barcodes: no
176s 
179s 
Processing [================                                  ] 1/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
179s 
179s DONE
179s 
179s NanoOK v1.33
179s 
179s Comments/bugs to: richard.leggett@earlham.ac.uk
179s Follow NanoOK on twitter: @NanoOK_Software
179s 
179s Scripts dir: /usr/share/nanook/bin
179s 
179s Checking dependencies
179s *** ERROR: Couldn't find Rscript - is R installed? ***
179s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
179s h5dump: Version 1.14.5
179s 
179s Checking FASTA/Q directory structure...
179s   Using pass/fail dirs: yes
179s       Using batch dirs: no
179s         Using barcodes: no
179s 
179s Using .sizes file ecoli_dh10b_cs.fasta.sizes
179s Note: if you have changed the reference file, you need to delete the .sizes file and re-run.
179s 
179s Reading reference sizes and making directories
179s 	Escherichia_coli	4686137
179s 	Control_sequence	3560
179s 
179s Calculating reference GC
179s 	Escherichia_coli
180s 	Control_sequence
180s 
180s Parsing Template
180s 
[                                                  ] 0/1
[==================================================] 1/1
180s 
180s Error: unable to find any Template alignments to process.
180s Common reasons for this:
180s 1. Failure to index the reference with the alignment tool, resulting in alignment files of 0 bytes
180s 2. Wrong reference specified to the align stage, resulting in no alignments
180s 3. When indexing with LAST, the output prefix needs to be the same as the reference FASTA file, minus the .fasta extension
180s    e.g. lastdb -Q 0 referencename referencename.fasta
180s 
180s autopkgtest [11:50:09]: test run-unit-test: -----------------------]
181s run-unit-test        FAIL non-zero exit status 1
181s autopkgtest [11:50:10]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
181s autopkgtest [11:50:10]: @@@@@@@@@@@@@@@@@@@@ summary
181s run-unit-test        FAIL non-zero exit status 1
201s nova [W] Skipping flock for amd64
201s Creating nova instance adt-plucky-amd64-nanook-20250219-114708-juju-7f2275-prod-proposed-migration-environment-2-ba8036f4-1db5-4ad3-9bef-569e9f939cf2 from image adt/ubuntu-plucky-amd64-server-20250219.img (UUID 90711abf-916f-4a80-845a-825250a78697)...
201s nova [W] Timed out waiting for 8259c34b-c0b3-4e56-9b0d-cb79e3a0d044 to get deleted.