0s autopkgtest [17:23:25]: starting date and time: 2025-01-18 17:23:25+0000 0s autopkgtest [17:23:25]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:23:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ny0hpze3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:last-align --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=last-align/1608-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-30.secgroup --name adt-plucky-amd64-nanook-20250118-172325-juju-7f2275-prod-proposed-migration-environment-15-0fbee791-2e81-48bf-a57d-17bcb276ef39 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 47s autopkgtest [17:24:12]: testbed dpkg architecture: amd64 47s autopkgtest [17:24:12]: testbed apt version: 2.9.18 48s autopkgtest [17:24:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [17:24:13]: testbed release detected to be: None 49s autopkgtest [17:24:14]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [152 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [796 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [198 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [284 kB] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 50s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [406 kB] 50s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [934 kB] 50s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [24.6 kB] 50s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4116 B] 51s Fetched 2940 kB in 1s (3015 kB/s) 51s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s Calculating upgrade... 53s The following packages will be upgraded: 53s apport apport-core-dump-handler bash-completion ed libicu74 pci.ids 53s python3-apport python3-problem-report 53s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 11.8 MB of archives. 53s After this operation, 394 kB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-problem-report all 2.31.0-0ubuntu3 [25.3 kB] 53s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apport all 2.31.0-0ubuntu3 [93.1 kB] 53s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 apport-core-dump-handler all 2.31.0-0ubuntu3 [18.3 kB] 53s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 apport all 2.31.0-0ubuntu3 [83.0 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu74 amd64 74.2-1ubuntu6 [11.0 MB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 bash-completion all 1:2.16.0-6 [214 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 ed amd64 1.21-1 [62.3 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.01.13-1 [282 kB] 54s Fetched 11.8 MB in 1s (10.8 MB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89449 files and directories currently installed.) 55s Preparing to unpack .../0-python3-problem-report_2.31.0-0ubuntu3_all.deb ... 55s Unpacking python3-problem-report (2.31.0-0ubuntu3) over (2.31.0-0ubuntu2) ... 55s Preparing to unpack .../1-python3-apport_2.31.0-0ubuntu3_all.deb ... 55s Unpacking python3-apport (2.31.0-0ubuntu3) over (2.31.0-0ubuntu2) ... 55s Preparing to unpack .../2-apport-core-dump-handler_2.31.0-0ubuntu3_all.deb ... 55s Unpacking apport-core-dump-handler (2.31.0-0ubuntu3) over (2.31.0-0ubuntu2) ... 55s Preparing to unpack .../3-apport_2.31.0-0ubuntu3_all.deb ... 55s Unpacking apport (2.31.0-0ubuntu3) over (2.31.0-0ubuntu2) ... 55s Preparing to unpack .../4-libicu74_74.2-1ubuntu6_amd64.deb ... 55s Unpacking libicu74:amd64 (74.2-1ubuntu6) over (74.2-1ubuntu4) ... 55s Preparing to unpack .../5-bash-completion_1%3a2.16.0-6_all.deb ... 55s Unpacking bash-completion (1:2.16.0-6) over (1:2.16.0-3) ... 55s Preparing to unpack .../6-ed_1.21-1_amd64.deb ... 55s Unpacking ed (1.21-1) over (1.20.2-2) ... 55s Preparing to unpack .../7-pci.ids_0.0~2025.01.13-1_all.deb ... 55s Unpacking pci.ids (0.0~2025.01.13-1) over (0.0~2024.11.25-1) ... 55s Setting up pci.ids (0.0~2025.01.13-1) ... 55s Setting up python3-problem-report (2.31.0-0ubuntu3) ... 56s Setting up python3-apport (2.31.0-0ubuntu3) ... 56s Setting up ed (1.21-1) ... 56s Setting up bash-completion (1:2.16.0-6) ... 56s Setting up libicu74:amd64 (74.2-1ubuntu6) ... 56s Setting up apport-core-dump-handler (2.31.0-0ubuntu3) ... 56s invoke-rc.d: policy-rc.d denied execution of restart. 56s /usr/sbin/policy-rc.d returned 101, not running 'restart apport.service' 56s Setting up apport (2.31.0-0ubuntu3) ... 57s /usr/sbin/policy-rc.d returned 101, not running 'restart apport-autoreport.path apport-autoreport.service apport-autoreport.timer apport-forward.socket' 57s Processing triggers for install-info (7.1.1-1) ... 57s Processing triggers for libc-bin (2.40-4ubuntu1) ... 57s Processing triggers for man-db (2.13.0-1) ... 58s 58s Running kernel seems to be up-to-date. 58s 58s No services need to be restarted. 58s 58s No containers need to be restarted. 58s 58s No user sessions are running outdated binaries. 58s 58s No VM guests are running outdated hypervisor (qemu) binaries on this host. 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s autopkgtest [17:24:24]: upgrading testbed (apt dist-upgrade and autopurge) 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 60s Starting 2 pkgProblemResolver with broken count: 0 60s Done 60s Entering ResolveByKeep 60s 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [17:24:27]: rebooting testbed after setup commands that affected boot 76s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 82s autopkgtest [17:24:47]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 85s autopkgtest [17:24:50]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook 87s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (dsc) [2220 B] 87s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (tar) [95.2 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (diff) [1818 kB] 87s gpgv: Signature made Wed Dec 18 14:21:48 2024 UTC 87s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 87s gpgv: issuer "emollier@debian.org" 87s gpgv: Can't check signature: No public key 87s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-6.dsc: no acceptable signature found 87s autopkgtest [17:24:52]: testing package nanook version 1.33+dfsg-6 88s autopkgtest [17:24:53]: build not needed 88s autopkgtest [17:24:53]: test run-unit-test: preparing testbed 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Starting pkgProblemResolver with broken count: 0 89s Starting 2 pkgProblemResolver with broken count: 0 89s Done 90s The following NEW packages will be installed: 90s ca-certificates-java default-jre-headless fontconfig fontconfig-config 90s fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common 90s last-align libaec0 libapache-pom-java libblas3 libcairo2 libcommons-io-java 90s libcommons-parent-java libdatrie1 libdeflate0 libfontconfig1 libgfortran5 90s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libice6 libjbig0 90s libjpeg-turbo8 libjpeg8 libkpathsea6 liblapack3 liblcms2-2 liblerc4 libmpfi0 90s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 90s libpaper2 libpcsclite1 libpixman-1-0 libpotrace0 libptexenc1 libsharpyuv0 90s libsm6 libsynctex2 libsz2 libteckit0 libtexlua53-5 libthai-data libthai0 90s libtiff6 libtk8.6 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 90s libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler nanook 90s nanook-examples openjdk-21-jre-headless r-base-core r-cran-cli 90s r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2 r-cran-glue 90s r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice 90s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 90s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig 90s r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp 90s r-cran-reshape r-cran-rlang r-cran-scales r-cran-tibble r-cran-utf8 90s r-cran-vctrs r-cran-viridislite r-cran-withr t1utils tex-common texlive-base 90s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 90s 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 166 MB of archives. 90s After this operation, 479 MB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ca-certificates-java all 20240118 [11.6 kB] 90s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 java-common all 0.76 [6852 B] 90s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 90s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcsclite1 amd64 2.3.1-1 [26.6 kB] 90s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre-headless amd64 21.0.5+11-1 [46.4 MB] 91s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre-headless amd64 2:1.21-76 [3178 B] 91s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 91s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 91s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 91s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 91s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 91s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 92s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 92s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 92s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-5ubuntu1 [1367 kB] 92s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-tools amd64 1.10.10+repack-5ubuntu1 [354 kB] 92s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 last-align amd64 1608-1 [1642 kB] 92s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libapache-pom-java all 33-2 [5874 B] 92s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 92s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 92s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 92s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 92s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 92s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 92s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-parent-java all 56-1 [10.7 kB] 92s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-io-java all 2.17.0-1 [457 kB] 92s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 92s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 92s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 92s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 92s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 92s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 92s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 92s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 92s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB] 92s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 92s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 92s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 92s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 92s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 92s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.55.0+ds-3 [255 kB] 92s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.55.0+ds-3 [51.9 kB] 92s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.55.0+ds-3 [29.1 kB] 92s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 92s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 92s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 92s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB] 92s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 92s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 92s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB] 92s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 92s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB] 92s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 92s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 92s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 92s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 92s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 92s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 92s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 92s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 92s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 92s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 92s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 92s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2build1 [28.1 kB] 92s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu1 [185 kB] 92s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 92s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 92s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 94s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 94s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 94s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 94s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 94s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 94s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 94s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 94s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 95s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-63-1 [1114 kB] 95s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 95s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.166-1 [2314 kB] 95s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-1-1 [4199 kB] 95s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 95s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 95s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 95s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 95s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 95s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 95s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 95s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 95s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 95s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 95s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 95s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 95s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 95s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 95s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 95s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 95s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 95s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 96s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 96s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 96s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.13-1-1 [1993 kB] 96s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 96s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape all 0.8.9-1 [168 kB] 96s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.18 [32.8 kB] 96s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 96s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB] 97s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20241115-1 [22.5 MB] 98s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20241115-1 [1260 kB] 98s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 nanook all 1.33+dfsg-6 [195 kB] 98s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 nanook-examples all 1.33+dfsg-6 [1814 kB] 98s Preconfiguring packages ... 98s Fetched 166 MB in 8s (20.3 MB/s) 98s Selecting previously unselected package ca-certificates-java. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 89449 files and directories currently installed.) 99s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ... 99s Unpacking ca-certificates-java (20240118) ... 99s Selecting previously unselected package java-common. 99s Preparing to unpack .../001-java-common_0.76_all.deb ... 99s Unpacking java-common (0.76) ... 99s Selecting previously unselected package liblcms2-2:amd64. 99s Preparing to unpack .../002-liblcms2-2_2.16-2_amd64.deb ... 99s Unpacking liblcms2-2:amd64 (2.16-2) ... 99s Selecting previously unselected package libjpeg-turbo8:amd64. 99s Preparing to unpack .../003-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 99s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 99s Selecting previously unselected package libjpeg8:amd64. 99s Preparing to unpack .../004-libjpeg8_8c-2ubuntu11_amd64.deb ... 99s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 99s Selecting previously unselected package libpcsclite1:amd64. 99s Preparing to unpack .../005-libpcsclite1_2.3.1-1_amd64.deb ... 99s Unpacking libpcsclite1:amd64 (2.3.1-1) ... 99s Selecting previously unselected package openjdk-21-jre-headless:amd64. 99s Preparing to unpack .../006-openjdk-21-jre-headless_21.0.5+11-1_amd64.deb ... 99s Unpacking openjdk-21-jre-headless:amd64 (21.0.5+11-1) ... 99s Selecting previously unselected package default-jre-headless. 99s Preparing to unpack .../007-default-jre-headless_2%3a1.21-76_amd64.deb ... 99s Unpacking default-jre-headless (2:1.21-76) ... 99s Selecting previously unselected package fonts-dejavu-mono. 99s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 99s Unpacking fonts-dejavu-mono (2.37-8) ... 99s Selecting previously unselected package fonts-dejavu-core. 99s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 99s Unpacking fonts-dejavu-core (2.37-8) ... 100s Selecting previously unselected package fontconfig-config. 100s Preparing to unpack .../010-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 100s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 100s Selecting previously unselected package libfontconfig1:amd64. 100s Preparing to unpack .../011-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 100s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 100s Selecting previously unselected package fontconfig. 100s Preparing to unpack .../012-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 100s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 100s Selecting previously unselected package fonts-lmodern. 100s Preparing to unpack .../013-fonts-lmodern_2.005-1_all.deb ... 100s Unpacking fonts-lmodern (2.005-1) ... 100s Selecting previously unselected package libaec0:amd64. 100s Preparing to unpack .../014-libaec0_1.1.3-1_amd64.deb ... 100s Unpacking libaec0:amd64 (1.1.3-1) ... 100s Selecting previously unselected package libsz2:amd64. 100s Preparing to unpack .../015-libsz2_1.1.3-1_amd64.deb ... 100s Unpacking libsz2:amd64 (1.1.3-1) ... 100s Selecting previously unselected package libhdf5-103-1t64:amd64. 100s Preparing to unpack .../016-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_amd64.deb ... 100s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-5ubuntu1) ... 100s Selecting previously unselected package hdf5-tools. 100s Preparing to unpack .../017-hdf5-tools_1.10.10+repack-5ubuntu1_amd64.deb ... 100s Unpacking hdf5-tools (1.10.10+repack-5ubuntu1) ... 100s Selecting previously unselected package last-align. 100s Preparing to unpack .../018-last-align_1608-1_amd64.deb ... 100s Unpacking last-align (1608-1) ... 100s Selecting previously unselected package libapache-pom-java. 100s Preparing to unpack .../019-libapache-pom-java_33-2_all.deb ... 100s Unpacking libapache-pom-java (33-2) ... 100s Selecting previously unselected package libblas3:amd64. 100s Preparing to unpack .../020-libblas3_3.12.0-4_amd64.deb ... 100s Unpacking libblas3:amd64 (3.12.0-4) ... 100s Selecting previously unselected package libpixman-1-0:amd64. 100s Preparing to unpack .../021-libpixman-1-0_0.44.0-3_amd64.deb ... 100s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 100s Selecting previously unselected package libxcb-render0:amd64. 100s Preparing to unpack .../022-libxcb-render0_1.17.0-2_amd64.deb ... 100s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 100s Selecting previously unselected package libxcb-shm0:amd64. 100s Preparing to unpack .../023-libxcb-shm0_1.17.0-2_amd64.deb ... 100s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 100s Selecting previously unselected package libxrender1:amd64. 100s Preparing to unpack .../024-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 100s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 100s Selecting previously unselected package libcairo2:amd64. 100s Preparing to unpack .../025-libcairo2_1.18.2-2_amd64.deb ... 100s Unpacking libcairo2:amd64 (1.18.2-2) ... 100s Selecting previously unselected package libcommons-parent-java. 100s Preparing to unpack .../026-libcommons-parent-java_56-1_all.deb ... 100s Unpacking libcommons-parent-java (56-1) ... 100s Selecting previously unselected package libcommons-io-java. 100s Preparing to unpack .../027-libcommons-io-java_2.17.0-1_all.deb ... 100s Unpacking libcommons-io-java (2.17.0-1) ... 100s Selecting previously unselected package libdatrie1:amd64. 100s Preparing to unpack .../028-libdatrie1_0.2.13-3build1_amd64.deb ... 100s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 100s Selecting previously unselected package libdeflate0:amd64. 101s Preparing to unpack .../029-libdeflate0_1.23-1_amd64.deb ... 101s Unpacking libdeflate0:amd64 (1.23-1) ... 101s Selecting previously unselected package libgfortran5:amd64. 101s Preparing to unpack .../030-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 101s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 101s Selecting previously unselected package libgomp1:amd64. 101s Preparing to unpack .../031-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 101s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 101s Selecting previously unselected package libgraphite2-3:amd64. 101s Preparing to unpack .../032-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 101s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 101s Selecting previously unselected package libharfbuzz0b:amd64. 101s Preparing to unpack .../033-libharfbuzz0b_10.2.0-1_amd64.deb ... 101s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 101s Selecting previously unselected package x11-common. 101s Preparing to unpack .../034-x11-common_1%3a7.7+23ubuntu3_all.deb ... 101s Unpacking x11-common (1:7.7+23ubuntu3) ... 101s Selecting previously unselected package libice6:amd64. 101s Preparing to unpack .../035-libice6_2%3a1.1.1-1_amd64.deb ... 101s Unpacking libice6:amd64 (2:1.1.1-1) ... 101s Selecting previously unselected package libkpathsea6:amd64. 101s Preparing to unpack .../036-libkpathsea6_2024.20240313.70630+ds-5build2_amd64.deb ... 101s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-5build2) ... 101s Selecting previously unselected package liblapack3:amd64. 101s Preparing to unpack .../037-liblapack3_3.12.0-4_amd64.deb ... 101s Unpacking liblapack3:amd64 (3.12.0-4) ... 101s Selecting previously unselected package liblerc4:amd64. 101s Preparing to unpack .../038-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 101s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 101s Selecting previously unselected package libmpfi0:amd64. 101s Preparing to unpack .../039-libmpfi0_1.5.4+ds-4_amd64.deb ... 101s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 101s Selecting previously unselected package libthai-data. 101s Preparing to unpack .../040-libthai-data_0.1.29-2build1_all.deb ... 101s Unpacking libthai-data (0.1.29-2build1) ... 101s Selecting previously unselected package libthai0:amd64. 101s Preparing to unpack .../041-libthai0_0.1.29-2build1_amd64.deb ... 101s Unpacking libthai0:amd64 (0.1.29-2build1) ... 101s Selecting previously unselected package libpango-1.0-0:amd64. 101s Preparing to unpack .../042-libpango-1.0-0_1.55.0+ds-3_amd64.deb ... 101s Unpacking libpango-1.0-0:amd64 (1.55.0+ds-3) ... 101s Selecting previously unselected package libpangoft2-1.0-0:amd64. 101s Preparing to unpack .../043-libpangoft2-1.0-0_1.55.0+ds-3_amd64.deb ... 101s Unpacking libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... 101s Selecting previously unselected package libpangocairo-1.0-0:amd64. 101s Preparing to unpack .../044-libpangocairo-1.0-0_1.55.0+ds-3_amd64.deb ... 101s Unpacking libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... 101s Selecting previously unselected package libpaper2:amd64. 101s Preparing to unpack .../045-libpaper2_2.2.5-0.3_amd64.deb ... 101s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 101s Selecting previously unselected package libpaper-utils. 101s Preparing to unpack .../046-libpaper-utils_2.2.5-0.3_amd64.deb ... 101s Unpacking libpaper-utils (2.2.5-0.3) ... 101s Selecting previously unselected package libpotrace0:amd64. 101s Preparing to unpack .../047-libpotrace0_1.16-2build1_amd64.deb ... 101s Unpacking libpotrace0:amd64 (1.16-2build1) ... 101s Selecting previously unselected package libptexenc1:amd64. 101s Preparing to unpack .../048-libptexenc1_2024.20240313.70630+ds-5build2_amd64.deb ... 101s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ... 101s Selecting previously unselected package libsharpyuv0:amd64. 101s Preparing to unpack .../049-libsharpyuv0_1.5.0-0.1_amd64.deb ... 101s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 101s Selecting previously unselected package libsm6:amd64. 101s Preparing to unpack .../050-libsm6_2%3a1.2.4-1_amd64.deb ... 101s Unpacking libsm6:amd64 (2:1.2.4-1) ... 101s Selecting previously unselected package libsynctex2:amd64. 101s Preparing to unpack .../051-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ... 101s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ... 101s Selecting previously unselected package libteckit0:amd64. 101s Preparing to unpack .../052-libteckit0_2.5.12+ds1-1_amd64.deb ... 101s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 101s Selecting previously unselected package libtexlua53-5:amd64. 101s Preparing to unpack .../053-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ... 101s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ... 101s Selecting previously unselected package libjbig0:amd64. 101s Preparing to unpack .../054-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 101s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 101s Selecting previously unselected package libwebp7:amd64. 101s Preparing to unpack .../055-libwebp7_1.5.0-0.1_amd64.deb ... 101s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 101s Selecting previously unselected package libtiff6:amd64. 101s Preparing to unpack .../056-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 101s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 101s Selecting previously unselected package libxft2:amd64. 101s Preparing to unpack .../057-libxft2_2.3.6-1build1_amd64.deb ... 101s Unpacking libxft2:amd64 (2.3.6-1build1) ... 102s Selecting previously unselected package libxss1:amd64. 102s Preparing to unpack .../058-libxss1_1%3a1.2.3-1build3_amd64.deb ... 102s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 102s Selecting previously unselected package libtk8.6:amd64. 102s Preparing to unpack .../059-libtk8.6_8.6.15-1_amd64.deb ... 102s Unpacking libtk8.6:amd64 (8.6.15-1) ... 102s Selecting previously unselected package libxt6t64:amd64. 102s Preparing to unpack .../060-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 102s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 102s Selecting previously unselected package libxmu6:amd64. 102s Preparing to unpack .../061-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 102s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 102s Selecting previously unselected package libxpm4:amd64. 102s Preparing to unpack .../062-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 102s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 102s Selecting previously unselected package libxaw7:amd64. 102s Preparing to unpack .../063-libxaw7_2%3a1.0.16-1_amd64.deb ... 102s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 102s Selecting previously unselected package libxi6:amd64. 102s Preparing to unpack .../064-libxi6_2%3a1.8.2-1_amd64.deb ... 102s Unpacking libxi6:amd64 (2:1.8.2-1) ... 102s Selecting previously unselected package libzzip-0-13t64:amd64. 102s Preparing to unpack .../065-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_amd64.deb ... 102s Unpacking libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ... 102s Selecting previously unselected package zip. 102s Preparing to unpack .../066-zip_3.0-14ubuntu1_amd64.deb ... 102s Unpacking zip (3.0-14ubuntu1) ... 102s Selecting previously unselected package unzip. 102s Preparing to unpack .../067-unzip_6.0-28ubuntu6_amd64.deb ... 102s Unpacking unzip (6.0-28ubuntu6) ... 102s Selecting previously unselected package xdg-utils. 102s Preparing to unpack .../068-xdg-utils_1.2.1-0ubuntu1_all.deb ... 102s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 102s Selecting previously unselected package r-base-core. 102s Preparing to unpack .../069-r-base-core_4.4.2-1build1_amd64.deb ... 102s Unpacking r-base-core (4.4.2-1build1) ... 102s Selecting previously unselected package r-cran-littler. 102s Preparing to unpack .../070-r-cran-littler_0.3.20-2_amd64.deb ... 102s Unpacking r-cran-littler (0.3.20-2) ... 102s Selecting previously unselected package littler. 102s Preparing to unpack .../071-littler_0.3.20-2_all.deb ... 102s Unpacking littler (0.3.20-2) ... 102s Selecting previously unselected package r-cran-cli. 102s Preparing to unpack .../072-r-cran-cli_3.6.3-1_amd64.deb ... 102s Unpacking r-cran-cli (3.6.3-1) ... 102s Selecting previously unselected package r-cran-glue. 102s Preparing to unpack .../073-r-cran-glue_1.8.0-1_amd64.deb ... 102s Unpacking r-cran-glue (1.8.0-1) ... 102s Selecting previously unselected package r-cran-rlang. 102s Preparing to unpack .../074-r-cran-rlang_1.1.4-1_amd64.deb ... 102s Unpacking r-cran-rlang (1.1.4-1) ... 103s Selecting previously unselected package r-cran-lifecycle. 103s Preparing to unpack .../075-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 103s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 103s Selecting previously unselected package r-cran-gtable. 103s Preparing to unpack .../076-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 103s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 103s Selecting previously unselected package r-cran-isoband. 103s Preparing to unpack .../077-r-cran-isoband_0.2.7-1_amd64.deb ... 103s Unpacking r-cran-isoband (0.2.7-1) ... 103s Selecting previously unselected package r-cran-mass. 103s Preparing to unpack .../078-r-cran-mass_7.3-63-1_amd64.deb ... 103s Unpacking r-cran-mass (7.3-63-1) ... 103s Selecting previously unselected package r-cran-lattice. 103s Preparing to unpack .../079-r-cran-lattice_0.22-6-1_amd64.deb ... 103s Unpacking r-cran-lattice (0.22-6-1) ... 103s Selecting previously unselected package r-cran-nlme. 103s Preparing to unpack .../080-r-cran-nlme_3.1.166-1_amd64.deb ... 103s Unpacking r-cran-nlme (3.1.166-1) ... 103s Selecting previously unselected package r-cran-matrix. 103s Preparing to unpack .../081-r-cran-matrix_1.7-1-1_amd64.deb ... 103s Unpacking r-cran-matrix (1.7-1-1) ... 103s Selecting previously unselected package r-cran-mgcv. 103s Preparing to unpack .../082-r-cran-mgcv_1.9-1-1_amd64.deb ... 103s Unpacking r-cran-mgcv (1.9-1-1) ... 103s Selecting previously unselected package r-cran-farver. 103s Preparing to unpack .../083-r-cran-farver_2.1.2-1_amd64.deb ... 103s Unpacking r-cran-farver (2.1.2-1) ... 103s Selecting previously unselected package r-cran-labeling. 103s Preparing to unpack .../084-r-cran-labeling_0.4.3-1_all.deb ... 103s Unpacking r-cran-labeling (0.4.3-1) ... 103s Selecting previously unselected package r-cran-colorspace. 103s Preparing to unpack .../085-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 103s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 103s Selecting previously unselected package r-cran-munsell. 103s Preparing to unpack .../086-r-cran-munsell_0.5.1-1_all.deb ... 103s Unpacking r-cran-munsell (0.5.1-1) ... 103s Selecting previously unselected package r-cran-r6. 103s Preparing to unpack .../087-r-cran-r6_2.5.1-1_all.deb ... 103s Unpacking r-cran-r6 (2.5.1-1) ... 103s Selecting previously unselected package r-cran-rcolorbrewer. 103s Preparing to unpack .../088-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 103s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 103s Selecting previously unselected package r-cran-viridislite. 103s Preparing to unpack .../089-r-cran-viridislite_0.4.2-2_all.deb ... 103s Unpacking r-cran-viridislite (0.4.2-2) ... 103s Selecting previously unselected package r-cran-scales. 103s Preparing to unpack .../090-r-cran-scales_1.3.0-1_all.deb ... 103s Unpacking r-cran-scales (1.3.0-1) ... 103s Selecting previously unselected package r-cran-fansi. 103s Preparing to unpack .../091-r-cran-fansi_1.0.5-1_amd64.deb ... 103s Unpacking r-cran-fansi (1.0.5-1) ... 103s Selecting previously unselected package r-cran-magrittr. 103s Preparing to unpack .../092-r-cran-magrittr_2.0.3-1_amd64.deb ... 103s Unpacking r-cran-magrittr (2.0.3-1) ... 103s Selecting previously unselected package r-cran-utf8. 103s Preparing to unpack .../093-r-cran-utf8_1.2.4-1_amd64.deb ... 103s Unpacking r-cran-utf8 (1.2.4-1) ... 103s Selecting previously unselected package r-cran-vctrs. 103s Preparing to unpack .../094-r-cran-vctrs_0.6.5-1_amd64.deb ... 103s Unpacking r-cran-vctrs (0.6.5-1) ... 103s Selecting previously unselected package r-cran-pillar. 104s Preparing to unpack .../095-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 104s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 104s Selecting previously unselected package r-cran-pkgconfig. 104s Preparing to unpack .../096-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 104s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 104s Selecting previously unselected package r-cran-tibble. 104s Preparing to unpack .../097-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 104s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 104s Selecting previously unselected package r-cran-withr. 104s Preparing to unpack .../098-r-cran-withr_3.0.2+dfsg-1_all.deb ... 104s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 104s Selecting previously unselected package r-cran-ggplot2. 104s Preparing to unpack .../099-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 104s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 104s Selecting previously unselected package r-cran-gridextra. 104s Preparing to unpack .../100-r-cran-gridextra_2.3-3build1_all.deb ... 104s Unpacking r-cran-gridextra (2.3-3build1) ... 104s Selecting previously unselected package r-cran-pkgkitten. 104s Preparing to unpack .../101-r-cran-pkgkitten_0.2.4-1_all.deb ... 104s Unpacking r-cran-pkgkitten (0.2.4-1) ... 104s Selecting previously unselected package r-cran-rcpp. 104s Preparing to unpack .../102-r-cran-rcpp_1.0.13-1-1_amd64.deb ... 104s Unpacking r-cran-rcpp (1.0.13-1-1) ... 104s Selecting previously unselected package r-cran-plyr. 104s Preparing to unpack .../103-r-cran-plyr_1.8.9-1_amd64.deb ... 104s Unpacking r-cran-plyr (1.8.9-1) ... 104s Selecting previously unselected package r-cran-reshape. 104s Preparing to unpack .../104-r-cran-reshape_0.8.9-1_all.deb ... 104s Unpacking r-cran-reshape (0.8.9-1) ... 104s Selecting previously unselected package tex-common. 104s Preparing to unpack .../105-tex-common_6.18_all.deb ... 104s Unpacking tex-common (6.18) ... 104s Selecting previously unselected package t1utils. 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(14.2.0-13ubuntu1) ... 106s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 106s Setting up libaec0:amd64 (1.1.3-1) ... 106s Setting up last-align (1608-1) ... 106s Setting up tex-common (6.18) ... 106s update-language: texlive-base not installed and configured, doing nothing! 106s Setting up zip (3.0-14ubuntu1) ... 106s Setting up libblas3:amd64 (3.12.0-4) ... 106s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 106s Setting up libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ... 106s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 106s Setting up libapache-pom-java (33-2) ... 106s Setting up t1utils (1.41-4build3) ... 106s Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ... 106s Setting up fonts-dejavu-mono (2.37-8) ... 106s Setting up libmpfi0:amd64 (1.5.4+ds-4) ... 106s Setting up fonts-dejavu-core (2.37-8) ... 106s Setting up libpcsclite1:amd64 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update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 106s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 106s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 106s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 106s Setting up libcommons-parent-java (56-1) ... 106s Setting up libpaper-utils (2.2.5-0.3) ... 106s Setting up libthai0:amd64 (0.1.29-2build1) ... 106s Setting up libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ... 106s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 106s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-5ubuntu1) ... 106s Setting up libsm6:amd64 (2:1.2.4-1) ... 106s Setting up libcommons-io-java (2.17.0-1) ... 106s Setting up hdf5-tools (1.10.10+repack-5ubuntu1) ... 106s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 106s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 106s Setting up libxaw7:amd64 (2:1.0.16-1) ... 107s Processing triggers for sgml-base (1.31) ... 107s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 107s Processing triggers for install-info (7.1.1-1) ... 107s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 109s Regenerating fonts cache... done. 109s Setting up libxft2:amd64 (2.3.6-1build1) ... 109s Setting up libtk8.6:amd64 (8.6.15-1) ... 109s Processing triggers for libc-bin (2.40-4ubuntu1) ... 109s Setting up libpango-1.0-0:amd64 (1.55.0+ds-3) ... 109s Processing triggers for man-db (2.13.0-1) ... 110s Setting up libcairo2:amd64 (1.18.2-2) ... 110s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ... 110s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 110s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 110s Setting up libpangoft2-1.0-0:amd64 (1.55.0+ds-3) ... 110s Setting up texlive-base (2024.20241115-1) ... 111s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 111s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 111s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 111s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 112s Setting up libpangocairo-1.0-0:amd64 (1.55.0+ds-3) ... 112s Setting up texlive-latex-base (2024.20241115-1) ... 112s Setting up r-base-core (4.4.2-1build1) ... 112s Creating config file /etc/R/Renviron with new version 112s Setting up r-cran-labeling (0.4.3-1) ... 112s Setting up r-cran-lattice (0.22-6-1) ... 112s Setting up r-cran-nlme (3.1.166-1) ... 112s Setting up r-cran-farver (2.1.2-1) ... 112s Setting up r-cran-viridislite (0.4.2-2) ... 112s Setting up r-cran-r6 (2.5.1-1) ... 112s Setting up r-cran-pkgkitten (0.2.4-1) ... 112s Setting up r-cran-magrittr (2.0.3-1) ... 112s Setting up r-cran-littler (0.3.20-2) ... 112s Setting up r-cran-rcpp (1.0.13-1-1) ... 112s Setting up r-cran-rlang (1.1.4-1) ... 112s Setting up littler (0.3.20-2) ... 112s Setting up r-cran-withr (3.0.2+dfsg-1) ... 112s Setting up r-cran-fansi (1.0.5-1) ... 112s Setting up r-cran-mass (7.3-63-1) ... 112s Setting up r-cran-glue (1.8.0-1) ... 112s Setting up r-cran-cli (3.6.3-1) ... 112s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 112s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 112s Setting up r-cran-utf8 (1.2.4-1) ... 112s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 112s Setting up r-cran-plyr (1.8.9-1) ... 112s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 112s Setting up r-cran-isoband (0.2.7-1) ... 112s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 112s Setting up r-cran-matrix (1.7-1-1) ... 112s Setting up r-cran-mgcv (1.9-1-1) ... 112s Setting up r-cran-vctrs (0.6.5-1) ... 112s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 112s Setting up r-cran-reshape (0.8.9-1) ... 112s Setting up r-cran-munsell (0.5.1-1) ... 112s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 112s Setting up r-cran-gridextra (2.3-3build1) ... 112s Setting up r-cran-scales (1.3.0-1) ... 112s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 112s Processing triggers for ca-certificates-java (20240118) ... 112s Adding debian:ACCVRAIZ1.pem 112s Adding debian:AC_RAIZ_FNMT-RCM.pem 112s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 112s Adding debian:ANF_Secure_Server_Root_CA.pem 112s Adding debian:Actalis_Authentication_Root_CA.pem 112s Adding debian:AffirmTrust_Commercial.pem 112s Adding debian:AffirmTrust_Networking.pem 112s Adding debian:AffirmTrust_Premium.pem 112s Adding debian:AffirmTrust_Premium_ECC.pem 112s Adding debian:Amazon_Root_CA_1.pem 112s Adding debian:Amazon_Root_CA_2.pem 112s Adding debian:Amazon_Root_CA_3.pem 112s Adding debian:Amazon_Root_CA_4.pem 112s Adding debian:Atos_TrustedRoot_2011.pem 112s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 112s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 112s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 112s Adding debian:BJCA_Global_Root_CA1.pem 112s Adding debian:BJCA_Global_Root_CA2.pem 112s Adding debian:Baltimore_CyberTrust_Root.pem 112s Adding debian:Buypass_Class_2_Root_CA.pem 112s Adding debian:Buypass_Class_3_Root_CA.pem 112s Adding debian:CA_Disig_Root_R2.pem 112s Adding debian:CFCA_EV_ROOT.pem 112s Adding debian:COMODO_Certification_Authority.pem 112s Adding debian:COMODO_ECC_Certification_Authority.pem 112s Adding debian:COMODO_RSA_Certification_Authority.pem 112s Adding debian:Certainly_Root_E1.pem 112s Adding debian:Certainly_Root_R1.pem 112s Adding debian:Certigna.pem 112s Adding debian:Certigna_Root_CA.pem 112s Adding debian:Certum_EC-384_CA.pem 112s Adding debian:Certum_Trusted_Network_CA.pem 112s Adding debian:Certum_Trusted_Network_CA_2.pem 112s Adding debian:Certum_Trusted_Root_CA.pem 112s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 112s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 112s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 112s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 112s Adding debian:Comodo_AAA_Services_root.pem 112s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 112s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 112s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 112s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 112s Adding debian:DigiCert_Assured_ID_Root_CA.pem 112s Adding debian:DigiCert_Assured_ID_Root_G2.pem 112s Adding debian:DigiCert_Assured_ID_Root_G3.pem 112s Adding debian:DigiCert_Global_Root_CA.pem 112s Adding debian:DigiCert_Global_Root_G2.pem 112s Adding debian:DigiCert_Global_Root_G3.pem 112s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 112s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 112s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 112s Adding debian:DigiCert_Trusted_Root_G4.pem 112s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 112s Adding debian:Entrust_Root_Certification_Authority.pem 112s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 112s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 112s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 112s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 112s Adding debian:GLOBALTRUST_2020.pem 112s Adding debian:GTS_Root_R1.pem 112s Adding debian:GTS_Root_R2.pem 112s Adding debian:GTS_Root_R3.pem 112s Adding debian:GTS_Root_R4.pem 112s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 112s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 112s Adding debian:GlobalSign_Root_CA.pem 112s Adding debian:GlobalSign_Root_CA_-_R3.pem 112s Adding debian:GlobalSign_Root_CA_-_R6.pem 112s Adding debian:GlobalSign_Root_E46.pem 112s Adding debian:GlobalSign_Root_R46.pem 112s Adding debian:Go_Daddy_Class_2_CA.pem 112s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 112s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 112s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 112s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 112s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 112s Adding debian:HiPKI_Root_CA_-_G1.pem 112s Adding debian:Hongkong_Post_Root_CA_3.pem 112s Adding debian:ISRG_Root_X1.pem 112s Adding debian:ISRG_Root_X2.pem 112s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 112s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 112s Adding debian:Izenpe.com.pem 112s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 112s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 112s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 112s Adding debian:NAVER_Global_Root_Certification_Authority.pem 112s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 112s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 112s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 112s Adding debian:QuoVadis_Root_CA_1_G3.pem 112s Adding debian:QuoVadis_Root_CA_2.pem 112s Adding debian:QuoVadis_Root_CA_2_G3.pem 112s Adding debian:QuoVadis_Root_CA_3.pem 112s Adding debian:QuoVadis_Root_CA_3_G3.pem 112s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 112s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 112s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 112s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 112s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 112s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 112s Adding debian:SZAFIR_ROOT_CA2.pem 112s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 112s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 112s Adding debian:SecureSign_RootCA11.pem 112s Adding debian:SecureTrust_CA.pem 112s Adding debian:Secure_Global_CA.pem 112s Adding debian:Security_Communication_ECC_RootCA1.pem 112s Adding debian:Security_Communication_RootCA2.pem 112s Adding debian:Security_Communication_RootCA3.pem 112s Adding debian:Security_Communication_Root_CA.pem 112s Adding debian:Starfield_Class_2_CA.pem 112s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 112s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 112s Adding debian:SwissSign_Gold_CA_-_G2.pem 112s Adding debian:SwissSign_Silver_CA_-_G2.pem 112s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 112s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 112s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 112s Adding debian:TWCA_Global_Root_CA.pem 112s Adding debian:TWCA_Root_Certification_Authority.pem 112s Adding debian:TeliaSonera_Root_CA_v1.pem 112s Adding debian:Telia_Root_CA_v2.pem 112s Adding debian:TrustAsia_Global_Root_CA_G3.pem 113s Adding debian:TrustAsia_Global_Root_CA_G4.pem 113s Adding debian:Trustwave_Global_Certification_Authority.pem 113s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 113s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 113s Adding debian:TunTrust_Root_CA.pem 113s Adding debian:UCA_Extended_Validation_Root.pem 113s Adding debian:UCA_Global_G2_Root.pem 113s Adding debian:USERTrust_ECC_Certification_Authority.pem 113s Adding debian:USERTrust_RSA_Certification_Authority.pem 113s Adding debian:XRamp_Global_CA_Root.pem 113s Adding debian:certSIGN_ROOT_CA.pem 113s Adding debian:certSIGN_Root_CA_G2.pem 113s Adding debian:e-Szigno_Root_CA_2017.pem 113s Adding debian:ePKI_Root_Certification_Authority.pem 113s Adding debian:emSign_ECC_Root_CA_-_C3.pem 113s Adding debian:emSign_ECC_Root_CA_-_G3.pem 113s Adding debian:emSign_Root_CA_-_C1.pem 113s Adding debian:emSign_Root_CA_-_G1.pem 113s Adding debian:vTrus_ECC_Root_CA.pem 113s Adding debian:vTrus_Root_CA.pem 113s done. 113s Setting up default-jre-headless (2:1.21-76) ... 113s Setting up nanook (1.33+dfsg-6) ... 113s Processing triggers for libc-bin (2.40-4ubuntu1) ... 113s Processing triggers for tex-common (6.18) ... 113s Running updmap-sys. This may take some time... done. 113s Running mktexlsr /var/lib/texmf ... done. 113s Building format(s) --all. 132s This may take some time... done. 133s 133s Running kernel seems to be up-to-date. 133s 133s No services need to be restarted. 133s 133s No containers need to be restarted. 133s 133s No user sessions are running outdated binaries. 133s 133s No VM guests are running outdated hypervisor (qemu) binaries on this host. 135s autopkgtest [17:25:40]: test run-unit-test: [----------------------- 141s 141s NanoOK v1.33 141s 141s Comments/bugs to: richard.leggett@earlham.ac.uk 141s Follow NanoOK on twitter: @NanoOK_Software 141s 141s Scripts dir: /usr/share/nanook/bin 141s 141s Checking dependencies 141s *** ERROR: Couldn't find Rscript - is R installed? *** 141s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) 141s h5dump: Version 1.10.10 141s 141s Making directory /tmp/autopkgtest.N5VZqw/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta 141s Checking FAST5 directory structure... 141s Using pass/fail dirs: yes 141s Using batch dirs: no 141s Using barcodes: no 141s 144s Processing [ ] 0/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 Processing [==================================================] 1/1 144s 144s DONE 144s 144s NanoOK v1.33 144s 144s Comments/bugs to: richard.leggett@earlham.ac.uk 144s Follow NanoOK on twitter: @NanoOK_Software 144s 144s Scripts dir: /usr/share/nanook/bin 144s 144s Checking dependencies 144s *** ERROR: Couldn't find Rscript - is R installed? *** 144s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) 144s h5dump: Version 1.10.10 144s 144s Making directory /tmp/autopkgtest.N5VZqw/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last 144s Making directory /tmp/autopkgtest.N5VZqw/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last 144s Checking FASTA/Q directory structure... 144s Using pass/fail dirs: yes 144s Using batch dirs: no 144s Using barcodes: no 144s 147s Processing [ ] 0/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 Processing [==================================================] 3/3 147s 147s DONE 147s 147s NanoOK v1.33 147s 147s Comments/bugs to: richard.leggett@earlham.ac.uk 147s Follow NanoOK on twitter: @NanoOK_Software 147s 147s Scripts dir: /usr/share/nanook/bin 147s 147s Checking dependencies 147s *** ERROR: Couldn't find Rscript - is R installed? *** 147s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) 147s h5dump: Version 1.10.10 147s 147s Checking FASTA/Q directory structure... 147s Using pass/fail dirs: yes 147s Using batch dirs: no 147s Using barcodes: no 147s 147s Using .sizes file ecoli_dh10b_cs.fasta.sizes 147s Note: if you have changed the reference file, you need to delete the .sizes file and re-run. 147s 147s Reading reference sizes and making directories 147s Escherichia_coli 4686137 147s Control_sequence 3560 147s 147s Calculating reference GC 147s Escherichia_coli 147s Control_sequence 147s 147s Parsing Template 148s [ ] 0/1 [==================================================] 1/1 148s 148s Error: unable to find any Template alignments to process. 148s Common reasons for this: 148s 1. Failure to index the reference with the alignment tool, resulting in alignment files of 0 bytes 148s 2. Wrong reference specified to the align stage, resulting in no alignments 148s 3. When indexing with LAST, the output prefix needs to be the same as the reference FASTA file, minus the .fasta extension 148s e.g. lastdb -Q 0 referencename referencename.fasta 148s 148s autopkgtest [17:25:53]: test run-unit-test: -----------------------] 148s run-unit-test FAIL non-zero exit status 1 148s autopkgtest [17:25:53]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 149s autopkgtest [17:25:54]: @@@@@@@@@@@@@@@@@@@@ summary 149s run-unit-test FAIL non-zero exit status 1 165s nova [W] Skipping flock for amd64 165s Creating nova instance adt-plucky-amd64-nanook-20250118-172325-juju-7f2275-prod-proposed-migration-environment-15-0fbee791-2e81-48bf-a57d-17bcb276ef39 from image adt/ubuntu-plucky-amd64-server-20250118.img (UUID e058fd01-4631-4391-b35e-268af134294d)... 165s nova [W] Timed out waiting for f64a2ace-fbef-4cfb-b812-61cf8fe16e53 to get deleted.