0s autopkgtest [13:36:33]: starting date and time: 2024-11-15 13:36:33+0000 0s autopkgtest [13:36:33]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [13:36:33]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.j2tliujy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.8.3-3ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-12.secgroup --name adt-plucky-amd64-multiqc-20241115-133633-juju-7f2275-prod-proposed-migration-environment-20-b5035209-5ef8-478c-aa38-33ab6e9ee1c8 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [13:37:21]: testbed dpkg architecture: amd64 49s autopkgtest [13:37:22]: testbed apt version: 2.9.8 49s autopkgtest [13:37:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 50s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1062 kB] 50s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 50s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.2 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [108 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [174 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [300 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [840 kB] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 50s Fetched 2718 kB in 1s (3393 kB/s) 50s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 53s Calculating upgrade... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 55s Reading package lists... 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s autopkgtest [13:37:31]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 59s autopkgtest [13:37:32]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 62s Get:1 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 62s Get:4 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 62s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 62s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 62s gpgv: issuer "tchet@debian.org" 62s gpgv: Can't check signature: No public key 62s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 63s autopkgtest [13:37:36]: testing package multiqc version 1.21+dfsg-2 63s autopkgtest [13:37:36]: build not needed 64s autopkgtest [13:37:37]: test run-unit-test: preparing testbed 65s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 67s The following additional packages will be installed: 67s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 67s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 67s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 67s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 67s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 67s liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 67s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 67s libxss1 multiqc python-matplotlib-data python3-appdirs python3-brotli 67s python3-click python3-colorama python3-coloredlogs python3-colormath 67s python3-contourpy python3-cycler python3-dateutil python3-decorator 67s python3-fastjsonschema python3-fonttools python3-fs python3-humanfriendly 67s python3-humanize python3-importlib-metadata python3-jupyter-core 67s python3-kiwisolver python3-lxml python3-lz4 python3-lzstring 67s python3-markdown python3-matplotlib python3-mpmath python3-nbformat 67s python3-networkx python3-numpy python3-packaging python3-pil 67s python3-pil.imagetk python3-platformdirs python3-plotly python3-pyaml-env 67s python3-rich-click python3-scipy python3-six python3-spectra python3-sympy 67s python3-tenacity python3-tk python3-traitlets python3-tz python3-ufolib2 67s python3-unicodedata2 python3.12-tk tk8.6-blt2.5 unicode-data x11-common 67s Suggested packages: 67s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 67s python-fastjsonschema-doc python3-pip python-lxml-doc python-markdown-doc 67s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 67s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 67s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 67s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 67s python3-gdal python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc 67s python3-dev python3-pytest python-pil-doc python3-pandas python3-ipykernel 67s python-scipy-doc texlive-fonts-extra python-sympy-doc python-tenacity-doc 67s tix python3-tk-dbg python3.13-tk python-traitlets-doc 67s Recommended packages: 67s javascript-common node-clipboard libjs-filesaver pandoc texlive-xetex 67s python3-bs4 python3-cssselect python3-html5lib python3-olefile g++ 67s | c++-compiler isympy-common 67s The following NEW packages will be installed: 67s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 67s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 67s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 67s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-metadata 67s libjs-jquery-tablesorter libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 67s liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 67s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 67s libxss1 multiqc python-matplotlib-data python3-appdirs python3-brotli 67s python3-click python3-colorama python3-coloredlogs python3-colormath 67s python3-contourpy python3-cycler python3-dateutil python3-decorator 67s python3-fastjsonschema python3-fonttools python3-fs python3-humanfriendly 67s python3-humanize python3-importlib-metadata python3-jupyter-core 67s python3-kiwisolver python3-lxml python3-lz4 python3-lzstring 67s python3-markdown python3-matplotlib python3-mpmath python3-nbformat 67s python3-networkx python3-numpy python3-packaging python3-pil 67s python3-pil.imagetk python3-platformdirs python3-plotly python3-pyaml-env 67s python3-rich-click python3-scipy python3-six python3-spectra python3-sympy 67s python3-tenacity python3-tk python3-traitlets python3-tz python3-ufolib2 67s python3-unicodedata2 python3.12-tk tk8.6-blt2.5 unicode-data x11-common 67s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 75.8 MB/75.8 MB of archives. 67s After this operation, 383 MB of additional disk space will be used. 67s Get:1 /tmp/autopkgtest.PIT2b8/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 67s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 67s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 67s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 67s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 67s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 67s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 67s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 67s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 67s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 67s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 67s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 68s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 68s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 68s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 68s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 68s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 68s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 68s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 68s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 68s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 68s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 68s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 68s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 68s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 68s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 68s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 68s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 68s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 68s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 68s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 68s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 68s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 68s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 68s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 68s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 68s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 68s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 68s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 68s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 68s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 68s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 68s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 68s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-importlib-metadata all 8.5.0-1 [20.7 kB] 68s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-click all 8.1.7-2 [79.5 kB] 68s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-humanfriendly all 10.0-6 [70.8 kB] 68s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-coloredlogs all 15.0.1-1 [38.2 kB] 68s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-humanize all 4.11.0-1 [58.0 kB] 68s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markdown all 3.6-1 [73.4 kB] 68s Get:50 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 68s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 68s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 68s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 68s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 68s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 68s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.6-1ubuntu1 [9806 B] 68s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 68s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 68s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 68s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 68s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 68s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 68s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 69s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 69s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 69s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 69s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 69s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 69s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 69s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 69s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 69s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 69s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 70s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 70s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 70s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 70s Get:77 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu1 [4691 kB] 70s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 70s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 70s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 70s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 70s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 70s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 70s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 70s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyaml-env all 1.2.1-2 [9090 B] 70s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rich-click all 1.6.0-1 [17.6 kB] 70s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 70s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-colormath all 3.0.0-4 [36.6 kB] 70s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spectra all 0.0.11-4 [17.2 kB] 70s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lzstring all 1.0.4-3 [6262 B] 70s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 multiqc all 1.21+dfsg-2 [733 kB] 71s Fetched 75.8 MB in 4s (20.8 MB/s) 71s Selecting previously unselected package libtcl8.6:amd64. 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75576 files and directories currently installed.) 71s Preparing to unpack .../00-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 71s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 71s Selecting previously unselected package fonts-dejavu-mono. 71s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 71s Unpacking fonts-dejavu-mono (2.37-8) ... 71s Selecting previously unselected package fonts-dejavu-core. 71s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 71s Unpacking fonts-dejavu-core (2.37-8) ... 71s Selecting previously unselected package fontconfig-config. 71s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 71s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 71s Selecting previously unselected package libfontconfig1:amd64. 71s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 71s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 71s Selecting previously unselected package libxrender1:amd64. 71s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 71s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 71s Selecting previously unselected package libxft2:amd64. 71s Preparing to unpack .../06-libxft2_2.3.6-1build1_amd64.deb ... 71s Unpacking libxft2:amd64 (2.3.6-1build1) ... 71s Selecting previously unselected package x11-common. 71s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu3_all.deb ... 71s 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package fonts-lyx. 72s Preparing to unpack .../13-fonts-lyx_2.4.2.1-1_all.deb ... 72s Unpacking fonts-lyx (2.4.2.1-1) ... 72s Selecting previously unselected package libblas3:amd64. 72s Preparing to unpack .../14-libblas3_3.12.0-3build2_amd64.deb ... 72s Unpacking libblas3:amd64 (3.12.0-3build2) ... 72s Selecting previously unselected package libdeflate0:amd64. 72s Preparing to unpack .../15-libdeflate0_1.22-1_amd64.deb ... 72s Unpacking libdeflate0:amd64 (1.22-1) ... 72s Selecting previously unselected package libgfortran5:amd64. 72s Preparing to unpack .../16-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package libgomp1:amd64. 72s Preparing to unpack .../17-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package libgraphite2-3:amd64. 72s Preparing to unpack .../18-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 72s 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previously unselected package libjs-jquery. 72s Preparing to unpack .../24-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 72s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 72s Selecting previously unselected package libjs-jquery-metadata. 72s Preparing to unpack .../25-libjs-jquery-metadata_12-4_all.deb ... 72s Unpacking libjs-jquery-metadata (12-4) ... 72s Selecting previously unselected package libjs-jquery-tablesorter. 72s Preparing to unpack .../26-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 72s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 72s Selecting previously unselected package libjs-jquery-ui. 72s Preparing to unpack .../27-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 72s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 72s Selecting previously unselected package liblapack3:amd64. 72s Preparing to unpack .../28-liblapack3_3.12.0-3build2_amd64.deb ... 72s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 72s Selecting previously unselected package liblbfgsb0:amd64. 72s Preparing to unpack .../29-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 72s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 72s Selecting previously unselected package liblcms2-2:amd64. 72s Preparing to unpack .../30-liblcms2-2_2.16-2_amd64.deb ... 72s Unpacking liblcms2-2:amd64 (2.16-2) ... 72s Selecting previously unselected package liblerc4:amd64. 72s Preparing to unpack .../31-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 72s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 72s Selecting previously unselected package libqhull-r8.0:amd64. 72s Preparing to unpack .../32-libqhull-r8.0_2020.2-6build1_amd64.deb ... 72s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 72s Selecting previously unselected package libraqm0:amd64. 72s Preparing to unpack .../33-libraqm0_0.10.1-1build1_amd64.deb ... 72s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 72s Selecting previously unselected package libsharpyuv0:amd64. 72s Preparing to unpack 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... 72s Selecting previously unselected package libxslt1.1:amd64. 72s Preparing to unpack .../40-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 72s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 72s Selecting previously unselected package python3-colorama. 72s Preparing to unpack .../41-python3-colorama_0.4.6-4_all.deb ... 72s Unpacking python3-colorama (0.4.6-4) ... 72s Selecting previously unselected package python3-importlib-metadata. 72s Preparing to unpack .../42-python3-importlib-metadata_8.5.0-1_all.deb ... 72s Unpacking python3-importlib-metadata (8.5.0-1) ... 72s Selecting previously unselected package python3-click. 72s Preparing to unpack .../43-python3-click_8.1.7-2_all.deb ... 72s Unpacking python3-click (8.1.7-2) ... 72s Selecting previously unselected package python3-humanfriendly. 72s Preparing to unpack .../44-python3-humanfriendly_10.0-6_all.deb ... 72s Unpacking python3-humanfriendly (10.0-6) ... 72s Selecting previously unselected package python3-coloredlogs. 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(2.9.0-2) ... 73s Selecting previously unselected package libopenjp2-7:amd64. 73s Preparing to unpack .../51-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 73s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 73s Selecting previously unselected package python3-pil:amd64. 73s Preparing to unpack .../52-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 73s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 73s Selecting previously unselected package python3.12-tk. 73s Preparing to unpack .../53-python3.12-tk_3.12.7-3_amd64.deb ... 73s Unpacking python3.12-tk (3.12.7-3) ... 73s Selecting previously unselected package python3-tk:amd64. 73s Preparing to unpack .../54-python3-tk_3.12.6-1ubuntu1_amd64.deb ... 73s Unpacking python3-tk:amd64 (3.12.6-1ubuntu1) ... 73s Selecting previously unselected package python3-pil.imagetk:amd64. 73s Preparing to unpack .../55-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 73s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 73s Selecting previously unselected package python3-numpy. 73s Preparing to unpack .../56-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 73s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 73s Selecting previously unselected package python3-contourpy. 73s Preparing to unpack .../57-python3-contourpy_1.3.0-2_amd64.deb ... 73s Unpacking python3-contourpy (1.3.0-2) ... 73s Selecting previously unselected package python3-cycler. 73s Preparing to unpack .../58-python3-cycler_0.12.1-1_all.deb ... 73s Unpacking python3-cycler (0.12.1-1) ... 73s Selecting previously unselected package python3-brotli. 73s Preparing to unpack .../59-python3-brotli_1.1.0-2build2_amd64.deb ... 73s Unpacking python3-brotli (1.1.0-2build2) ... 73s Selecting previously unselected package python3-decorator. 73s Preparing to unpack .../60-python3-decorator_5.1.1-5_all.deb ... 73s Unpacking python3-decorator (5.1.1-5) ... 73s Selecting previously unselected package python3-scipy. 73s Preparing to unpack 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(1.0.4-3) ... 77s Selecting previously unselected package multiqc. 77s Preparing to unpack .../89-multiqc_1.21+dfsg-2_all.deb ... 77s Unpacking multiqc (1.21+dfsg-2) ... 77s Selecting previously unselected package autopkgtest-satdep. 77s Preparing to unpack .../90-1-autopkgtest-satdep.deb ... 77s Unpacking autopkgtest-satdep (0) ... 77s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 77s Setting up liblcms2-2:amd64 (2.16-2) ... 77s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 77s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 77s Setting up python3-importlib-metadata (8.5.0-1) ... 77s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 77s Setting up python3-colorama (0.4.6-4) ... 77s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 77s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 77s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 77s Setting up fonts-lyx (2.4.2.1-1) ... 77s Setting up python3-tenacity (8.5.0-0ubuntu1) ... 77s Setting up x11-common (1:7.7+23ubuntu3) ... 78s Setting up libdeflate0:amd64 (1.22-1) ... 78s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 78s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 78s Setting up python3-click (8.1.7-2) ... 78s Setting up python3-networkx (3.2.1-4ubuntu1) ... 79s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 79s Setting up python3-platformdirs (4.3.6-1) ... 79s Setting up python3-tz (2024.1-2) ... 79s Setting up unicode-data (15.1.0-1) ... 79s Setting up python3-six (1.16.0-7) ... 79s Setting up python3-decorator (5.1.1-5) ... 79s Setting up libblas3:amd64 (3.12.0-3build2) ... 79s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 79s Setting up python3-pyaml-env (1.2.1-2) ... 79s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 79s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 79s Setting up python3-packaging (24.1-1) ... 80s Setting up python3-humanfriendly (10.0-6) ... 80s Setting up python3-brotli (1.1.0-2build2) ... 80s Setting up python3-cycler (0.12.1-1) ... 80s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 80s Setting up fonts-dejavu-mono (2.37-8) ... 80s Setting up python3-kiwisolver (1.4.7-2build1) ... 80s Setting up python3-markdown (3.6-1) ... 80s Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... 80s Setting up fonts-dejavu-core (2.37-8) ... 80s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 80s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 80s Setting up libwebp7:amd64 (1.4.0-0.1) ... 80s Setting up python3-rich-click (1.6.0-1) ... 80s Setting up python3-fastjsonschema (2.20.0-1) ... 80s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 80s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 80s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 80s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 80s Setting up python3-dateutil (2.9.0-2) ... 81s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 81s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 81s Setting up python3-mpmath (1.3.0-1) ... 81s Setting up python3-lzstring (1.0.4-3) ... 81s Setting up python3-humanize (4.11.0-1) ... 81s Setting up python-matplotlib-data (3.8.3-3ubuntu1) ... 81s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 81s Setting up python3-coloredlogs (15.0.1-1) ... 81s Setting up python3-appdirs (1.4.4-4) ... 81s Setting up python3-jupyter-core (5.7.2-4) ... 82s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 82s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 82s Setting up python3-sympy (1.13.3-1) ... 86s Setting up liblapack3:amd64 (3.12.0-3build2) ... 86s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 86s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 87s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 87s Setting up python3-nbformat (5.9.1-1) ... 87s Setting up python3-fs (2.4.16-4) ... 87s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 87s Setting up libjs-jquery-metadata (12-4) ... 87s Setting up libraqm0:amd64 (0.10.1-1build1) ... 87s Setting up python3-plotly (5.20.0+dfsg-1) ... 92s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 94s Setting up python3-colormath (3.0.0-4) ... 94s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 94s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 94s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:684: SyntaxWarning: invalid escape sequence '\s' 94s """ 94s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:788: SyntaxWarning: invalid escape sequence '\s' 94s """ 94s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 94s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 94s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 94s logger.debug(" \- Target RGB space: %s", target_rgb) 94s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 94s logger.debug(" \- Target native illuminant: %s", target_illum) 94s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 94s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 94s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 94s logger.debug(" \* Applying transformation from %s to %s ", 94s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 94s logger.debug(" \* New values: %.3f, %.3f, %.3f", 94s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 94s logger.debug(" \- Original illuminant: %s", self.illuminant) 94s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 94s logger.debug(" \- Target illuminant: %s", target_illuminant) 94s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 94s logger.debug(" \* Applying transformation from %s to %s ", 94s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 94s Setting up python3-lxml:amd64 (5.3.0-1) ... 94s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 94s Setting up python3-contourpy (1.3.0-2) ... 94s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 94s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 94s Setting up libxft2:amd64 (2.3.6-1build1) ... 94s Setting up python3-scipy (1.13.1-5) ... 97s Setting up python3-spectra (0.0.11-4) ... 97s Setting up libtk8.6:amd64 (8.6.15-1) ... 97s Setting up python3.12-tk (3.12.7-3) ... 97s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 97s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 97s Setting up blt (2.5.3+dfsg-7build1) ... 97s Setting up python3-tk:amd64 (3.12.6-1ubuntu1) ... 97s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 97s Setting up python3-fonttools (4.46.0-1build2) ... 98s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 98s Setting up python3-matplotlib (3.8.3-3ubuntu1) ... 99s Setting up multiqc (1.21+dfsg-2) ... 100s Setting up autopkgtest-satdep (0) ... 100s Processing triggers for libc-bin (2.40-1ubuntu3) ... 100s Processing triggers for man-db (2.13.0-1) ... 104s (Reading database ... 101001 files and directories currently installed.) 104s Removing autopkgtest-satdep (0) ... 105s autopkgtest [13:38:18]: test run-unit-test: [----------------------- 105s 105s /// MultiQC 🔍 | v1.21 105s 105s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 105s 105s MultiQC aggregates results from bioinformatics analyses across many samples 105s into a single report. 105s It searches a given directory for analysis logs and compiles a HTML report. 105s It's a general use tool, perfect for summarising the output from numerous 105s bioinformatics tools. 105s To run, supply with one or more directory to scan for analysis results. For 105s example, to run in the current working directory, use 'multiqc .' 105s 105s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 105s │ --force -f Overwrite any existing reports │ 105s │ --config -c Specific config file to load, after those in MultiQC │ 105s │ dir / home dir / working dir. │ 105s │ (PATH) │ 105s │ --cl-config Specify MultiQC config YAML on the command line │ 105s │ (TEXT) │ 105s │ --filename -n Report filename. Use 'stdout' to print to standard │ 105s │ out. │ 105s │ (TEXT) │ 105s │ --outdir -o Create report in the specified output directory. │ 105s │ (TEXT) │ 105s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 105s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 105s │ --ignore-symlinks Ignore symlinked directories and files │ 105s │ --file-list -l Supply a file containing a list of file paths to be │ 105s │ searched, one per row │ 105s ╰──────────────────────────────────────────────────────────────────────────────╯ 105s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 105s │ --module -m Use only this module. Can specify multiple times. │ 105s │ (MODULE NAME) │ 105s │ --exclude -e Do not use this module. Can specify multiple times. │ 105s │ (MODULE NAME) │ 105s ╰──────────────────────────────────────────────────────────────────────────────╯ 105s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 105s │ --dirs -d Prepend directory to sample names │ 105s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 105s │ to take from start of path. │ 105s │ (INTEGER) │ 105s │ --fullnames -s Do not clean the sample names (leave as full file │ 105s │ name) │ 105s │ --fn_as_s_name Use the log filename as the sample name │ 105s │ --replace-names TSV file to rename sample names during report │ 105s │ generation │ 105s │ (PATH) │ 105s ╰──────────────────────────────────────────────────────────────────────────────╯ 105s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 105s │ --title -i Report title. Printed as page header, used for │ 105s │ filename if not otherwise specified. │ 105s │ (TEXT) │ 105s │ --comment -b Custom comment, will be printed at the top of the │ 105s │ report. │ 105s │ (TEXT) │ 105s │ --template -t Report template to use. │ 105s │ (default|gathered|geo|highcharts|sections|simple) │ 105s │ --sample-names TSV file containing alternative sample names for │ 105s │ renaming buttons in the report │ 105s │ (PATH) │ 105s │ --sample-filters TSV file containing show/hide patterns for the report │ 105s │ (PATH) │ 105s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 105s ╰──────────────────────────────────────────────────────────────────────────────╯ 105s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 105s │ --flat -fp Use only flat plots (static images) │ 105s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 105s │ --export -p Export plots as static images in addition to the report │ 105s │ --data-dir Force the parsed data directory to be created. │ 105s │ --no-data-dir Prevent the parsed data directory from being created. │ 105s │ --data-format -k Output parsed data in a different format. │ 105s │ (tsv|csv|json|yaml) │ 105s │ --zip-data-dir -z Compress the data directory. │ 105s │ --no-report Do not generate a report, only export data and plots │ 105s │ --pdf Creates PDF report with the 'simple' template. Requires │ 105s │ Pandoc to be installed. │ 105s ╰──────────────────────────────────────────────────────────────────────────────╯ 105s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 105s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 105s │ --quiet -q Only show log warnings │ 105s │ --strict Don't catch exceptions, run additional code checks │ 105s │ to help development. │ 105s │ --development,--dev Development mode. Do not compress and minimise JS, │ 105s │ export uncompressed plot data │ 105s │ --require-logs Require all explicitly requested modules to have │ 105s │ log files. If not, MultiQC will exit with an error. │ 105s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 105s │ the report │ 105s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 105s │ MegaQC options are found │ 105s │ --no-ansi Disable coloured log output │ 105s │ --version Show the version and exit. │ 105s │ --help -h Show this message and exit. │ 105s ╰──────────────────────────────────────────────────────────────────────────────╯ 105s 105s See http://multiqc.info for more details. 105s 105s FIXME: The test data should be delivered in a separate binary package once freeze is over 106s 106s /// MultiQC 🔍 | v1.21 106s 107s | multiqc | MultiQC Version v1.25.1 now available! 107s | multiqc | Search path : /tmp/autopkgtest.PIT2b8/autopkgtest_tmp/data 108s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 108s | feature_counts | Found 8 reports 108s | star | Found 8 reports 108s | cutadapt | Found 16 reports 108s | fastqc | Found 32 reports 108s | multiqc | Report : multiqc_report.html 108s | multiqc | Data : multiqc_data 108s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpf4vsjsyq/assets/js/packages/jszip.min.js' 108s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpf4vsjsyq/assets/js/packages/plotly-2.27.0.min.js' 108s | multiqc | MultiQC complete 108s -e 108s PASS 108s 109s autopkgtest [13:38:22]: test run-unit-test: -----------------------] 109s run-unit-test PASS 109s autopkgtest [13:38:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 110s autopkgtest [13:38:23]: @@@@@@@@@@@@@@@@@@@@ summary 110s run-unit-test PASS 121s nova [W] Skipping flock for amd64 121s Creating nova instance adt-plucky-amd64-multiqc-20241115-133633-juju-7f2275-prod-proposed-migration-environment-20-b5035209-5ef8-478c-aa38-33ab6e9ee1c8 from image adt/ubuntu-plucky-amd64-server-20241115.img (UUID 9bb4dd9c-454f-45da-a125-77b9d27ed145)...