0s autopkgtest [20:18:21]: starting date and time: 2025-03-15 20:18:21+0000 0s autopkgtest [20:18:21]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [20:18:21]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kjt1ofmh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-73.secgroup --name adt-plucky-amd64-mdanalysis-20250315-201821-juju-7f2275-prod-proposed-migration-environment-2-2f4bf406-03a1-4e9f-b101-87bb648a1002 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [20:19:12]: testbed dpkg architecture: amd64 51s autopkgtest [20:19:12]: testbed apt version: 2.9.31ubuntu1 51s autopkgtest [20:19:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s autopkgtest [20:19:12]: testbed release detected to be: None 52s autopkgtest [20:19:13]: updating testbed package index (apt update) 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 52s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 52s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 52s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [86.6 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [62.1 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1884 B] 52s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B] 52s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [330 kB] 52s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [166 kB] 52s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [15.6 kB] 52s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [8544 B] 52s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [16.1 kB] 52s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B] 52s Fetched 1242 kB in 0s (5740 kB/s) 53s Reading package lists... 53s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade... 54s Calculating upgrade... 54s The following package was automatically installed and is no longer required: 54s libnl-genl-3-200 54s Use 'sudo apt autoremove' to remove it. 54s The following NEW packages will be installed: 54s bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10 54s linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic 54s linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic 54s linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids 54s The following packages will be upgraded: 54s apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu 54s cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0 54s gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common 54s libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0 54s libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1 54s libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5 54s libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200 54s libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13 54s libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1 54s libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic 54s linux-headers-generic linux-headers-virtual linux-image-generic 54s linux-image-virtual linux-libc-dev linux-tools-common linux-virtual 54s media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils 54s pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend 54s python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe 54s python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm 54s python3.13-minimal rsync rsyslog strace xz-utils 54s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 807 MB of archives. 54s After this operation, 326 MB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB] 55s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB] 55s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB] 55s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB] 55s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB] 55s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB] 55s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB] 55s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB] 55s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 55s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B] 55s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB] 55s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB] 55s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB] 55s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB] 55s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB] 55s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB] 56s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB] 56s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB] 56s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B] 56s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB] 56s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB] 56s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB] 56s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB] 56s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB] 56s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB] 56s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB] 56s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB] 56s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB] 56s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB] 56s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB] 56s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB] 56s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB] 56s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB] 56s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB] 56s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB] 56s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB] 56s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB] 56s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB] 56s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB] 56s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB] 56s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB] 56s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB] 56s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB] 56s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB] 56s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB] 56s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB] 56s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B] 56s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB] 56s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB] 56s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB] 56s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB] 56s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 56s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB] 56s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB] 57s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB] 57s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB] 57s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB] 57s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB] 57s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB] 57s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB] 57s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB] 57s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 57s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB] 57s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB] 80s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB] 82s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB] 83s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB] 87s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B] 87s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB] 87s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B] 87s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB] 87s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B] 87s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB] 88s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB] 88s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB] 88s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB] 88s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB] 88s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB] 88s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B] 88s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB] 88s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB] 88s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB] 88s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB] 88s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B] 89s Preconfiguring packages ... 89s Fetched 807 MB in 34s (23.8 MB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 89s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ... 89s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ... 89s Setting up ncurses-bin (6.5+20250216-2) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 89s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ... 89s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ... 89s Setting up ncurses-base (6.5+20250216-2) ... 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 89s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ... 89s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ... 90s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ... 90s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ... 90s Setting up liblz4-1:amd64 (1.10.0-4) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 90s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ... 90s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ... 90s Setting up liblzma5:amd64 (5.6.4-1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 90s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ... 90s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ... 90s Setting up libapt-pkg7.0:amd64 (2.9.33) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 90s Preparing to unpack .../archives/apt_2.9.33_amd64.deb ... 90s Unpacking apt (2.9.33) over (2.9.31ubuntu1) ... 91s Setting up apt (2.9.33) ... 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 109138 files and directories currently installed.) 91s Preparing to unpack .../apt-utils_2.9.33_amd64.deb ... 91s Unpacking apt-utils (2.9.33) over (2.9.31ubuntu1) ... 91s Preparing to unpack .../python3-minimal_3.13.2-2_amd64.deb ... 91s Unpacking python3-minimal (3.13.2-2) over (3.13.2-1) ... 91s Setting up python3-minimal (3.13.2-2) ... 91s (Reading database ... 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(1.0.6-5) ... 108s Preparing to unpack .../68-python3-systemd_235-1build6_amd64.deb ... 108s Unpacking python3-systemd (235-1build6) over (235-1build5) ... 108s Preparing to unpack .../69-python3.13-gdbm_3.13.2-2_amd64.deb ... 108s Unpacking python3.13-gdbm (3.13.2-2) over (3.13.2-1) ... 108s Preparing to unpack .../70-cloud-init_25.1-0ubuntu3_all.deb ... 108s Unpacking cloud-init (25.1-0ubuntu3) over (25.1-0ubuntu2) ... 108s Setting up linux-headers-6.14.0-10 (6.14.0-10.10) ... 108s Setting up media-types (13.0.0) ... 108s Installing new version of config file /etc/mime.types ... 108s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ... 108s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ... 108s Setting up pci.ids (0.0~2025.03.09-1) ... 108s Setting up apt-utils (2.9.33) ... 108s Setting up libdebuginfod-common (0.192-4) ... 108s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ... 108s Setting up bpftool (7.6.0+6.14.0-10.10) ... 108s Setting up libestr0:amd64 (0.1.11-2) ... 108s Setting up libbrotli1:amd64 (1.1.0-2build4) ... 108s Setting up libsqlite3-0:amd64 (3.46.1-2) ... 108s Setting up dosfstools (4.2-1.2) ... 108s Setting up rsyslog (8.2412.0-2ubuntu2) ... 109s info: The user `syslog' is already a member of `adm'. 110s Setting up binutils-common:amd64 (2.44-3ubuntu1) ... 110s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ... 110s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ... 110s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ... 110s Setting up linux-headers-generic (6.14.0-10.10) ... 110s Setting up libjemalloc2:amd64 (5.3.0-3) ... 110s Setting up libsframe1:amd64 (2.44-3ubuntu1) ... 110s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ... 110s Setting up apparmor (4.1.0~beta5-0ubuntu8) ... 110s Installing new version of config file /etc/apparmor.d/openvpn ... 111s Reloading AppArmor profiles 112s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ... 112s No schema files found: doing nothing. 112s Setting up libglib2.0-data (2.84.0-1) ... 112s Setting up libncurses6:amd64 (6.5+20250216-2) ... 112s Setting up strace (6.13+ds-1ubuntu1) ... 112s Setting up xz-utils (5.6.4-1) ... 112s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ... 112s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ... 114s Setting up libncursesw6:amd64 (6.5+20250216-2) ... 114s Setting up libpci3:amd64 (1:3.13.0-2) ... 114s Setting up python-apt-common (2.9.9build1) ... 114s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ... 114s Setting up pnp.ids (0.393-3) ... 114s Setting up libnl-3-200:amd64 (3.7.0-1) ... 114s Setting up python3.13-minimal (3.13.2-2) ... 114s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ... 114s Setting up libbinutils:amd64 (2.44-3ubuntu1) ... 114s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ... 114s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ... 114s Setting up rsync (3.4.1+ds1-3) ... 115s rsync.service is a disabled or a static unit not running, not starting it. 115s Setting up python3.13-gdbm (3.13.2-2) ... 115s Setting up libpython3-stdlib:amd64 (3.13.2-2) ... 115s Setting up ncurses-term (6.5+20250216-2) ... 115s Setting up libctf0:amd64 (2.44-3ubuntu1) ... 115s Setting up libpython3.13:amd64 (3.13.2-2) ... 115s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 115s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 115s Setting up linux-headers-virtual (6.14.0-10.10) ... 115s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ... 115s Setting up python3.13 (3.13.2-2) ... 116s Setting up htop (3.4.0-2) ... 116s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ... 118s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic 118s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic 118s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic 118s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic 118s Setting up libfwupd3:amd64 (2.0.6-4) ... 118s Setting up python3 (3.13.2-2) ... 118s Setting up python3-markupsafe (2.1.5-1build4) ... 118s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ... 120s Setting up libnl-route-3-200:amd64 (3.7.0-1) ... 120s Setting up hwdata (0.393-3) ... 120s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 121s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ... 121s Setting up linux-perf (6.14.0-10.10) ... 121s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ... 121s Setting up python3-gi (3.50.0-4build1) ... 121s Setting up pciutils (1:3.13.0-2) ... 121s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ... 121s Setting up curl (8.12.1-3ubuntu1) ... 121s Setting up linux-image-virtual (6.14.0-10.10) ... 121s Setting up linux-tools-common (6.14.0-10.10) ... 121s Setting up fwupd (2.0.6-4) ... 121s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 121s fwupd.service is a disabled or a static unit not running, not starting it. 121s Setting up python3-systemd (235-1build6) ... 122s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ... 122s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ... 122s Setting up linux-image-generic (6.14.0-10.10) ... 122s Setting up python3-dbus (1.3.2-5build5) ... 122s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ... 122s Setting up linux-generic (6.14.0-10.10) ... 122s Setting up python3-apt (2.9.9build1) ... 122s Setting up python3-yaml (6.0.2-1build2) ... 122s Setting up python3-lazr.uri (1.0.6-6) ... 122s Setting up binutils (2.44-3ubuntu1) ... 122s Setting up cloud-init-base (25.1-0ubuntu3) ... 124s Setting up linux-virtual (6.14.0-10.10) ... 124s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ... 124s Setting up cloud-init (25.1-0ubuntu3) ... 124s Processing triggers for systemd (257.3-1ubuntu3) ... 124s Processing triggers for man-db (2.13.0-1) ... 126s Processing triggers for dbus (1.16.2-1ubuntu1) ... 126s Processing triggers for libc-bin (2.41-1ubuntu1) ... 126s Processing triggers for initramfs-tools (0.146ubuntu1) ... 126s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic 126s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 137s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ... 137s /etc/kernel/postinst.d/initramfs-tools: 137s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic 137s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 148s /etc/kernel/postinst.d/zz-update-grub: 148s Sourcing file `/etc/default/grub' 148s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 148s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 148s Generating grub configuration file ... 148s Found linux image: /boot/vmlinuz-6.14.0-10-generic 148s Found initrd image: /boot/initrd.img-6.14.0-10-generic 148s Found linux image: /boot/vmlinuz-6.12.0-16-generic 148s Found initrd image: /boot/initrd.img-6.12.0-16-generic 148s Found linux image: /boot/vmlinuz-6.11.0-8-generic 148s Found initrd image: /boot/initrd.img-6.11.0-8-generic 148s Warning: os-prober will not be executed to detect other bootable partitions. 148s Systems on them will not be added to the GRUB boot configuration. 148s Check GRUB_DISABLE_OS_PROBER documentation entry. 148s Adding boot menu entry for UEFI Firmware Settings ... 148s done 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Solving dependencies... 150s The following packages will be REMOVED: 150s libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib* 150s libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 150s linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic* 150s linux-image-6.11.0-8-generic* linux-image-6.12.0-16-generic* 150s linux-modules-6.11.0-8-generic* linux-modules-6.12.0-16-generic* 150s linux-modules-extra-6.12.0-16-generic* linux-tools-6.11.0-8* 150s linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16* 150s linux-tools-6.12.0-16-generic* 151s 0 upgraded, 0 newly installed, 18 to remove and 5 not upgraded. 151s After this operation, 545 MB disk space will be freed. 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 148643 files and directories currently installed.) 151s Removing libnl-genl-3-200:amd64 (3.7.0-1) ... 151s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 151s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 151s Removing libpython3.12t64:amd64 (3.12.9-1) ... 151s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ... 151s Removing libnsl2:amd64 (1.3.0-3build3) ... 151s Removing libpython3.12-minimal:amd64 (3.12.9-1) ... 151s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 152s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 154s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ... 154s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ... 156s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 156s /etc/kernel/postrm.d/initramfs-tools: 156s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 156s /etc/kernel/postrm.d/zz-update-grub: 156s Sourcing file `/etc/default/grub' 156s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 156s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 156s Generating grub configuration file ... 157s Found linux image: /boot/vmlinuz-6.14.0-10-generic 157s Found initrd image: /boot/initrd.img-6.14.0-10-generic 157s Found linux image: /boot/vmlinuz-6.12.0-16-generic 157s Found initrd image: /boot/initrd.img-6.12.0-16-generic 157s Warning: os-prober will not be executed to detect other bootable partitions. 157s Systems on them will not be added to the GRUB boot configuration. 157s Check GRUB_DISABLE_OS_PROBER documentation entry. 157s Adding boot menu entry for UEFI Firmware Settings ... 157s done 157s Removing linux-image-6.12.0-16-generic (6.12.0-16.16) ... 157s W: Removing the running kernel 157s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 157s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 157s /etc/kernel/postrm.d/initramfs-tools: 157s update-initramfs: Deleting /boot/initrd.img-6.12.0-16-generic 157s /etc/kernel/postrm.d/zz-update-grub: 157s Sourcing file `/etc/default/grub' 157s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 157s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 157s Generating grub configuration file ... 157s Found linux image: /boot/vmlinuz-6.14.0-10-generic 157s Found initrd image: /boot/initrd.img-6.14.0-10-generic 158s Warning: os-prober will not be executed to detect other bootable partitions. 158s Systems on them will not be added to the GRUB boot configuration. 158s Check GRUB_DISABLE_OS_PROBER documentation entry. 158s Adding boot menu entry for UEFI Firmware Settings ... 158s done 158s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 158s Removing linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 159s Removing linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 159s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ... 159s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ... 159s Processing triggers for libc-bin (2.41-1ubuntu1) ... 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76972 files and directories currently installed.) 160s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 160s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ... 160s Purging configuration files for linux-modules-extra-6.12.0-16-generic (6.12.0-16.16) ... 160s Purging configuration files for linux-modules-6.12.0-16-generic (6.12.0-16.16) ... 160s dpkg: warning: while removing linux-modules-6.12.0-16-generic, directory '/lib/modules/6.12.0-16-generic' not empty so not removed 160s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 160s Purging configuration files for linux-image-6.12.0-16-generic (6.12.0-16.16) ... 160s rmdir: failed to remove '/lib/modules/6.12.0-16-generic': Directory not empty 160s autopkgtest [20:21:01]: upgrading testbed (apt dist-upgrade and autopurge) 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 161s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 161s Starting 2 pkgProblemResolver with broken count: 0 161s Done 162s Entering ResolveByKeep 162s 162s Calculating upgrade... 162s The following packages will be upgraded: 162s libc-bin libc-dev-bin libc6 libc6-dev locales 162s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 10.5 MB of archives. 162s After this operation, 1024 B of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu2 [2183 kB] 163s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu2 [24.7 kB] 163s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu2 [3327 kB] 163s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu2 [700 kB] 163s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu2 [4246 kB] 164s Preconfiguring packages ... 164s Fetched 10.5 MB in 1s (7374 kB/s) 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 164s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_amd64.deb ... 164s Unpacking libc6-dev:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 164s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_amd64.deb ... 164s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 164s Preparing to unpack .../libc6_2.41-1ubuntu2_amd64.deb ... 164s Unpacking libc6:amd64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Setting up libc6:amd64 (2.41-1ubuntu2) ... 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 165s Preparing to unpack .../libc-bin_2.41-1ubuntu2_amd64.deb ... 165s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Setting up libc-bin (2.41-1ubuntu2) ... 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 165s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 165s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 165s Setting up locales (2.41-1ubuntu2) ... 166s Generating locales (this might take a while)... 167s en_US.UTF-8... done 167s Generation complete. 167s Setting up libc-dev-bin (2.41-1ubuntu2) ... 167s Setting up libc6-dev:amd64 (2.41-1ubuntu2) ... 167s Processing triggers for man-db (2.13.0-1) ... 168s Processing triggers for systemd (257.3-1ubuntu3) ... 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 170s Solving dependencies... 170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 170s autopkgtest [20:21:11]: rebooting testbed after setup commands that affected boot 174s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 185s autopkgtest [20:21:26]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025 186s autopkgtest [20:21:27]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 192s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.8.0-4build1 (dsc) [2947 B] 192s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.8.0-4build1 (tar) [60.8 MB] 192s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.8.0-4build1 (diff) [11.2 kB] 192s gpgv: Signature made Tue Mar 4 14:49:32 2025 UTC 192s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 192s gpgv: Can't check signature: No public key 192s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.8.0-4build1.dsc: no acceptable signature found 193s autopkgtest [20:21:34]: testing package mdanalysis version 2.8.0-4build1 193s autopkgtest [20:21:34]: build not needed 195s autopkgtest [20:21:36]: test test-mdanalysis: preparing testbed 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 196s Starting pkgProblemResolver with broken count: 0 196s Starting 2 pkgProblemResolver with broken count: 0 196s Done 196s The following NEW packages will be installed: 196s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 196s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 196s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 196s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 196s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-14 196s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 196s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian libaec0 196s libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl 196s libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 196s libfontenc1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 196s libhdf5-310 libhdf5-hl-310 libhwasan0 libimagequant0 libisl23 libitm1 196s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-mathjax 196s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 196s liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libnetcdf22 libopenjp2-7 196s libpixman-1-0 libpython3-all-dev libpython3-dev libpython3.13-dev 196s libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev libsz2 196s libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 libwebp7 196s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 196s libxslt1.1 libxss1 m4 po-debconf pybuild-plugin-pyproject 196s python-matplotlib-data python-mdanalysis-doc python3-alabaster python3-all 196s python3-all-dev python3-biopython python3-brotli python3-build python3-cairo 196s python3-cftime python3-citeproc python3-contourpy python3-cycler 196s python3-dateutil python3-decorator python3-defusedxml python3-dev 196s python3-docutils python3-duecredit python3-fasteners python3-fonttools 196s python3-freetype python3-fs python3-griddataformats python3-gsd python3-h5py 196s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 196s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 196s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 196s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 196s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 196s python3-netcdf4 python3-networkx python3-numpy python3-numpy-dev 196s python3-packaging python3-pandas python3-pandas-lib python3-pil 196s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pybtex 196s python3-pybtex-docutils python3-pyproject-hooks python3-pytest python3-pytz 196s python3-reportlab python3-rlpycairo python3-roman python3-scipy 196s python3-seaborn python3-six python3-sklearn python3-sklearn-lib 196s python3-snowballstemmer python3-sortedcontainers python3-sphinx 196s python3-sphinx-rtd-theme python3-sphinx-sitemap python3-sphinxcontrib.bibtex 196s python3-sphinxcontrib.jquery python3-sympy python3-threadpoolctl python3-tk 196s python3-toml python3-tqdm python3-tz python3-ufolib2 python3-unicodedata2 196s python3-wheel python3.12-tk python3.13-dev python3.13-tk sgml-base 196s sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data w3c-sgml-lib 196s x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 196s 0 upgraded, 205 newly installed, 0 to remove and 0 not upgraded. 196s Need to get 229 MB of archives. 196s After this operation, 928 MB of additional disk space will be used. 196s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 196s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 196s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 196s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB] 196s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 196s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 196s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 196s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-7 [263 kB] 196s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 196s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 196s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 197s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.23.1-1 [619 kB] 197s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 197s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 197s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 197s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 197s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 197s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 197s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 197s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 197s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 197s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 197s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 197s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 197s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 197s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 197s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 197s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 197s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 197s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 197s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [11.9 MB] 197s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-17ubuntu3 [1030 B] 197s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 197s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 197s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 15-20250222-0ubuntu1 [47.0 kB] 197s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB] 197s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250222-0ubuntu1 [28.6 kB] 197s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250222-0ubuntu1 [3055 kB] 197s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250222-0ubuntu1 [1355 kB] 198s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250222-0ubuntu1 [2756 kB] 198s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250222-0ubuntu1 [1205 kB] 198s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250222-0ubuntu1 [1677 kB] 198s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250222-0ubuntu1 [152 kB] 198s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu3 [2816 kB] 198s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [23.3 MB] 198s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-17ubuntu3 [536 kB] 198s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 198s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 198s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu3 [2486 kB] 198s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-17ubuntu3 [13.4 MB] 198s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-17ubuntu3 [21.8 kB] 198s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 198s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 198s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 198s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu2 [2676 kB] 198s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 198s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.5.4-4 [168 kB] 198s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 198s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 198s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 198s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 198s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-2 [47.0 kB] 198s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 198s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.23.1-1 [1086 kB] 198s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 198s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 198s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.24.1ubuntu2 [895 kB] 198s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20250308 [118 kB] 198s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 198s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 198s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 198s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 198s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 198s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 198s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 198s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 198s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 198s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 198s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 198s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 198s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 198s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 198s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 198s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 198s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 198s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 198s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 198s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 198s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 198s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 198s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 198s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 198s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 198s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 198s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 198s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 198s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 198s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 198s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 198s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.2-2 [5503 kB] 198s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.13.2-2 [10.7 kB] 198s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-all-dev amd64 3.13.2-2 [910 B] 198s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 198s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 198s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 198s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 198s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 198s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 198s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 198s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 198s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 198s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 198s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 198s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 198s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB] 198s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 198s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 198s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20250308 [1726 B] 198s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 198s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 199s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-mdanalysis-doc all 2.8.0-4build1 [3458 kB] 199s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.2-2 [884 B] 199s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.2-2 [509 kB] 199s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.13.2-2 [26.7 kB] 199s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all-dev amd64 3.13.2-2 [908 B] 199s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB] 199s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-2 [107 kB] 199s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B] 199s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B] 199s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 199s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 199s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2build2 [124 kB] 199s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 199s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 199s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.3.1-1 [1137 kB] 199s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 199s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.85+dfsg-2build1 [1739 kB] 199s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB] 199s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-2 [233 kB] 199s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1build1 [1408 kB] 199s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-citeproc all 0.7.0-1 [99.7 kB] 199s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 199s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 199s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 199s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 199s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB] 199s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 5.0-1 [10.3 kB] 199s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 199s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-looseversion all 1.3.0-3 [8354 B] 199s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-duecredit all 0.10.2-2 [66.0 kB] 199s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-monotonic all 1.6-3 [5344 B] 199s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-fasteners all 0.18-2 [12.5 kB] 199s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 199s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 199s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1build1 [27.0 kB] 199s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB] 200s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 200s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 200s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 200s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB] 200s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 200s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB] 200s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 200s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB] 200s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-griddataformats all 1.0.2-2 [2107 kB] 200s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-gsd amd64 3.4.2-2build1 [215 kB] 200s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.13.0-1 [1230 kB] 200s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.13.0-1 [7978 B] 200s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 200s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hypothesis all 6.127.4-1 [335 kB] 200s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 200s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 200s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-3 [205 kB] 200s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB] 200s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 200s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-7build1 [17.4 MB] 201s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 201s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-msgpack amd64 1.0.3-3build4 [87.7 kB] 201s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mmtf all 1.1.3-1 [16.2 kB] 201s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 201s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB] 201s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mdanalysis amd64 2.8.0-4build1 [3955 kB] 201s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 8.1.3-4 [663 kB] 201s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 201s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 201s Get:186 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 8.1.3-4 [474 kB] 201s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 201s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 201s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-msmb-theme all 1.2.0-4 [35.4 kB] 201s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1build4 [667 kB] 201s Get:191 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 201s Get:192 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB] 201s Get:193 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B] 201s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8build1 [5332 kB] 201s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 201s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 201s Get:197 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB] 201s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 201s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex-docutils all 1.0.2-1 [7176 B] 201s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.5-1 [252 kB] 201s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-seaborn all 0.13.2-4.1 [225 kB] 201s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-7build2 [4353 kB] 201s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-7build2 [2258 kB] 202s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-sitemap all 2.6.0-1 [6674 B] 202s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 203s Fetched 229 MB in 6s (39.6 MB/s) 203s Selecting previously unselected package fonts-lato. 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76968 files and directories currently installed.) 203s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 203s Unpacking fonts-lato (2.015-1) ... 203s Selecting previously unselected package python3-numpy-dev:amd64. 203s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 203s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 203s Selecting previously unselected package libblas3:amd64. 203s Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... 203s Unpacking libblas3:amd64 (3.12.1-2) ... 203s Selecting previously unselected package libgfortran5:amd64. 203s Preparing to unpack .../003-libgfortran5_15-20250222-0ubuntu1_amd64.deb ... 203s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ... 203s Selecting previously unselected package liblapack3:amd64. 203s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... 203s Unpacking liblapack3:amd64 (3.12.1-2) ... 203s Selecting previously unselected package python3-numpy. 203s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 203s Unpacking python3-numpy (1:2.2.3+ds-5) ... 204s Selecting previously unselected package sgml-base. 204s Preparing to unpack .../006-sgml-base_1.31_all.deb ... 204s Unpacking sgml-base (1.31) ... 204s Selecting previously unselected package m4. 204s Preparing to unpack .../007-m4_1.4.19-7_amd64.deb ... 204s Unpacking m4 (1.4.19-7) ... 204s Selecting previously unselected package autoconf. 204s Preparing to unpack .../008-autoconf_2.72-3ubuntu1_all.deb ... 204s Unpacking autoconf (2.72-3ubuntu1) ... 204s Selecting previously unselected package autotools-dev. 204s Preparing to unpack .../009-autotools-dev_20220109.1_all.deb ... 204s Unpacking autotools-dev (20220109.1) ... 204s Selecting previously unselected package automake. 204s Preparing to unpack .../010-automake_1%3a1.17-3ubuntu1_all.deb ... 204s Unpacking automake (1:1.17-3ubuntu1) ... 204s Selecting previously unselected package autopoint. 204s Preparing to unpack .../011-autopoint_0.23.1-1_all.deb ... 204s Unpacking autopoint (0.23.1-1) ... 204s Selecting previously unselected package libtcl8.6:amd64. 204s Preparing to unpack .../012-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 204s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 204s Selecting previously unselected package fonts-dejavu-mono. 204s Preparing to unpack .../013-fonts-dejavu-mono_2.37-8_all.deb ... 204s Unpacking fonts-dejavu-mono (2.37-8) ... 204s Selecting previously unselected package fonts-dejavu-core. 204s Preparing to unpack .../014-fonts-dejavu-core_2.37-8_all.deb ... 204s Unpacking fonts-dejavu-core (2.37-8) ... 204s Selecting previously unselected package libfontenc1:amd64. 204s Preparing to unpack .../015-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 204s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 204s Selecting previously unselected package x11-common. 204s Preparing to unpack .../016-x11-common_1%3a7.7+23ubuntu3_all.deb ... 204s Unpacking x11-common (1:7.7+23ubuntu3) ... 204s Selecting previously unselected package xfonts-encodings. 204s Preparing to unpack .../017-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 204s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 204s Selecting previously unselected package xfonts-utils. 204s Preparing to unpack .../018-xfonts-utils_1%3a7.7+7_amd64.deb ... 204s Unpacking xfonts-utils (1:7.7+7) ... 204s Selecting previously unselected package fonts-urw-base35. 204s Preparing to unpack .../019-fonts-urw-base35_20200910-8_all.deb ... 204s Unpacking fonts-urw-base35 (20200910-8) ... 204s Selecting previously unselected package fontconfig-config. 204s Preparing to unpack .../020-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 204s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 205s Selecting previously unselected package libfontconfig1:amd64. 205s Preparing to unpack .../021-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 205s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 205s Selecting previously unselected package libxrender1:amd64. 205s Preparing to unpack .../022-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 205s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 205s Selecting previously unselected package libxft2:amd64. 205s Preparing to unpack .../023-libxft2_2.3.6-1build1_amd64.deb ... 205s Unpacking libxft2:amd64 (2.3.6-1build1) ... 205s Selecting previously unselected package libxss1:amd64. 205s Preparing to unpack .../024-libxss1_1%3a1.2.3-1build3_amd64.deb ... 205s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 205s Selecting previously unselected package libtk8.6:amd64. 205s Preparing to unpack .../025-libtk8.6_8.6.16-1_amd64.deb ... 205s Unpacking libtk8.6:amd64 (8.6.16-1) ... 205s Selecting previously unselected package tk8.6-blt2.5. 205s Preparing to unpack .../026-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 205s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 205s Selecting previously unselected package blt. 205s Preparing to unpack .../027-blt_2.5.3+dfsg-8_amd64.deb ... 205s Unpacking blt (2.5.3+dfsg-8) ... 205s Selecting previously unselected package libisl23:amd64. 205s Preparing to unpack .../028-libisl23_0.27-1_amd64.deb ... 205s Unpacking libisl23:amd64 (0.27-1) ... 205s Selecting previously unselected package libmpc3:amd64. 205s Preparing to unpack .../029-libmpc3_1.3.1-1build2_amd64.deb ... 205s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 205s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 205s Preparing to unpack .../030-cpp-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 205s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 205s Selecting previously unselected package cpp-14. 205s Preparing to unpack .../031-cpp-14_14.2.0-17ubuntu3_amd64.deb ... 205s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 205s Selecting previously unselected package cpp-x86-64-linux-gnu. 205s Preparing to unpack .../032-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 205s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 205s Selecting previously unselected package cpp. 205s Preparing to unpack .../033-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 205s Unpacking cpp (4:14.2.0-1ubuntu1) ... 205s Selecting previously unselected package libcc1-0:amd64. 205s Preparing to unpack .../034-libcc1-0_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libcc1-0:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package libgomp1:amd64. 205s Preparing to unpack .../035-libgomp1_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package libitm1:amd64. 205s Preparing to unpack .../036-libitm1_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libitm1:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package libasan8:amd64. 205s Preparing to unpack .../037-libasan8_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libasan8:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package liblsan0:amd64. 205s Preparing to unpack .../038-liblsan0_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking liblsan0:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package libtsan2:amd64. 205s Preparing to unpack .../039-libtsan2_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libtsan2:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package libubsan1:amd64. 205s Preparing to unpack .../040-libubsan1_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libubsan1:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package libhwasan0:amd64. 205s Preparing to unpack .../041-libhwasan0_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libhwasan0:amd64 (15-20250222-0ubuntu1) ... 205s Selecting previously unselected package libquadmath0:amd64. 205s Preparing to unpack .../042-libquadmath0_15-20250222-0ubuntu1_amd64.deb ... 205s Unpacking libquadmath0:amd64 (15-20250222-0ubuntu1) ... 206s Selecting previously unselected package libgcc-14-dev:amd64. 206s Preparing to unpack .../043-libgcc-14-dev_14.2.0-17ubuntu3_amd64.deb ... 206s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu3) ... 206s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 206s Preparing to unpack .../044-gcc-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 206s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 206s Selecting previously unselected package gcc-14. 206s Preparing to unpack .../045-gcc-14_14.2.0-17ubuntu3_amd64.deb ... 206s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 206s Selecting previously unselected package gcc-x86-64-linux-gnu. 206s Preparing to unpack .../046-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 206s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 206s Selecting previously unselected package gcc. 206s Preparing to unpack .../047-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 206s Unpacking gcc (4:14.2.0-1ubuntu1) ... 206s Selecting previously unselected package libstdc++-14-dev:amd64. 206s Preparing to unpack .../048-libstdc++-14-dev_14.2.0-17ubuntu3_amd64.deb ... 206s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu3) ... 206s Selecting previously unselected package g++-14-x86-64-linux-gnu. 206s Preparing to unpack .../049-g++-14-x86-64-linux-gnu_14.2.0-17ubuntu3_amd64.deb ... 206s Unpacking g++-14-x86-64-linux-gnu (14.2.0-17ubuntu3) ... 206s Selecting previously unselected package g++-14. 206s Preparing to unpack .../050-g++-14_14.2.0-17ubuntu3_amd64.deb ... 206s Unpacking g++-14 (14.2.0-17ubuntu3) ... 206s Selecting previously unselected package g++-x86-64-linux-gnu. 207s Preparing to unpack .../051-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 207s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 207s Selecting previously unselected package g++. 207s Preparing to unpack .../052-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 207s Unpacking g++ (4:14.2.0-1ubuntu1) ... 207s Selecting previously unselected package build-essential. 207s Preparing to unpack .../053-build-essential_12.10ubuntu1_amd64.deb ... 207s Unpacking build-essential (12.10ubuntu1) ... 207s Selecting previously unselected package cython3. 207s Preparing to unpack .../054-cython3_3.0.11+dfsg-2ubuntu2_amd64.deb ... 207s Unpacking cython3 (3.0.11+dfsg-2ubuntu2) ... 207s Selecting previously unselected package libdebhelper-perl. 207s Preparing to unpack .../055-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 207s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 207s Selecting previously unselected package libtool. 207s Preparing to unpack .../056-libtool_2.5.4-4_all.deb ... 207s Unpacking libtool (2.5.4-4) ... 207s Selecting previously unselected package dh-autoreconf. 207s Preparing to unpack .../057-dh-autoreconf_20_all.deb ... 207s Unpacking dh-autoreconf (20) ... 207s Selecting previously unselected package libarchive-zip-perl. 207s Preparing to unpack .../058-libarchive-zip-perl_1.68-1_all.deb ... 207s Unpacking libarchive-zip-perl (1.68-1) ... 207s Selecting previously unselected package libfile-stripnondeterminism-perl. 207s Preparing to unpack .../059-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 207s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 207s Selecting previously unselected package dh-strip-nondeterminism. 207s Preparing to unpack .../060-dh-strip-nondeterminism_1.14.1-2_all.deb ... 207s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 207s Selecting previously unselected package debugedit. 207s Preparing to unpack .../061-debugedit_1%3a5.1-2_amd64.deb ... 207s Unpacking debugedit (1:5.1-2) ... 207s Selecting previously unselected package dwz. 207s Preparing to unpack .../062-dwz_0.15-1build6_amd64.deb ... 207s Unpacking dwz (0.15-1build6) ... 207s Selecting previously unselected package gettext. 207s Preparing to unpack .../063-gettext_0.23.1-1_amd64.deb ... 207s Unpacking gettext (0.23.1-1) ... 207s Selecting previously unselected package intltool-debian. 207s Preparing to unpack .../064-intltool-debian_0.35.0+20060710.6_all.deb ... 207s Unpacking intltool-debian (0.35.0+20060710.6) ... 207s Selecting previously unselected package po-debconf. 207s Preparing to unpack .../065-po-debconf_1.0.21+nmu1_all.deb ... 207s Unpacking po-debconf (1.0.21+nmu1) ... 207s Selecting previously unselected package debhelper. 207s Preparing to unpack .../066-debhelper_13.24.1ubuntu2_all.deb ... 207s Unpacking debhelper (13.24.1ubuntu2) ... 207s Selecting previously unselected package dh-python. 207s Preparing to unpack .../067-dh-python_6.20250308_all.deb ... 207s Unpacking dh-python (6.20250308) ... 207s Selecting previously unselected package xml-core. 207s Preparing to unpack .../068-xml-core_0.19_all.deb ... 207s Unpacking xml-core (0.19) ... 207s Selecting previously unselected package docutils-common. 207s Preparing to unpack .../069-docutils-common_0.21.2+dfsg-2_all.deb ... 207s Unpacking docutils-common (0.21.2+dfsg-2) ... 207s Selecting previously unselected package fonts-font-awesome. 207s Preparing to unpack .../070-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 207s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 207s Selecting previously unselected package fonts-lyx. 207s Preparing to unpack .../071-fonts-lyx_2.4.3-1_all.deb ... 207s Unpacking fonts-lyx (2.4.3-1) ... 207s Selecting previously unselected package fonts-mathjax. 207s Preparing to unpack .../072-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 207s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 208s Selecting previously unselected package libaec0:amd64. 208s Preparing to unpack .../073-libaec0_1.1.3-1_amd64.deb ... 208s Unpacking libaec0:amd64 (1.1.3-1) ... 208s Selecting previously unselected package libpixman-1-0:amd64. 208s Preparing to unpack .../074-libpixman-1-0_0.44.0-3_amd64.deb ... 208s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 208s Selecting previously unselected package libxcb-render0:amd64. 208s Preparing to unpack .../075-libxcb-render0_1.17.0-2_amd64.deb ... 208s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 208s Selecting previously unselected package libxcb-shm0:amd64. 208s Preparing to unpack .../076-libxcb-shm0_1.17.0-2_amd64.deb ... 208s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 208s Selecting previously unselected package libcairo2:amd64. 208s Preparing to unpack .../077-libcairo2_1.18.2-2_amd64.deb ... 208s Unpacking libcairo2:amd64 (1.18.2-2) ... 208s Selecting previously unselected package libdeflate0:amd64. 208s Preparing to unpack .../078-libdeflate0_1.23-1_amd64.deb ... 208s Unpacking libdeflate0:amd64 (1.23-1) ... 208s Selecting previously unselected package libexpat1-dev:amd64. 208s Preparing to unpack .../079-libexpat1-dev_2.6.4-1_amd64.deb ... 208s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 208s Selecting previously unselected package libgraphite2-3:amd64. 208s Preparing to unpack .../080-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 208s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 208s Selecting previously unselected package libharfbuzz0b:amd64. 208s Preparing to unpack .../081-libharfbuzz0b_10.2.0-1_amd64.deb ... 208s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 208s Selecting previously unselected package libsz2:amd64. 208s Preparing to unpack .../082-libsz2_1.1.3-1_amd64.deb ... 208s Unpacking libsz2:amd64 (1.1.3-1) ... 208s Selecting previously unselected package libhdf5-310:amd64. 208s Preparing to unpack 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Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 208s Selecting previously unselected package liblcms2-2:amd64. 208s Preparing to unpack .../094-liblcms2-2_2.16-2_amd64.deb ... 208s Unpacking liblcms2-2:amd64 (2.16-2) ... 208s Selecting previously unselected package liblerc4:amd64. 208s Preparing to unpack .../095-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 208s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 208s Selecting previously unselected package liblzf1:amd64. 208s Preparing to unpack .../096-liblzf1_3.6-4_amd64.deb ... 208s Unpacking liblzf1:amd64 (3.6-4) ... 208s Selecting previously unselected package libnetcdf22:amd64. 208s Preparing to unpack .../097-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 208s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 208s Selecting previously unselected package zlib1g-dev:amd64. 209s Preparing to unpack .../098-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 209s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 209s Selecting previously unselected package libpython3.13-dev:amd64. 209s Preparing to unpack .../099-libpython3.13-dev_3.13.2-2_amd64.deb ... 209s Unpacking libpython3.13-dev:amd64 (3.13.2-2) ... 209s Selecting previously unselected package libpython3-dev:amd64. 209s Preparing to unpack .../100-libpython3-dev_3.13.2-2_amd64.deb ... 209s Unpacking libpython3-dev:amd64 (3.13.2-2) ... 209s Selecting previously unselected package libpython3-all-dev:amd64. 209s Preparing to unpack .../101-libpython3-all-dev_3.13.2-2_amd64.deb ... 209s Unpacking libpython3-all-dev:amd64 (3.13.2-2) ... 209s Selecting previously unselected package libqhull-r8.0:amd64. 209s Preparing to unpack .../102-libqhull-r8.0_2020.2-6build1_amd64.deb ... 209s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 209s Selecting previously unselected package libraqm0:amd64. 209s Preparing to unpack .../103-libraqm0_0.10.2-1_amd64.deb ... 209s Unpacking libraqm0:amd64 (0.10.2-1) ... 209s Selecting previously unselected package libsharpyuv0:amd64. 209s Preparing to unpack .../104-libsharpyuv0_1.5.0-0.1_amd64.deb ... 209s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 209s Selecting previously unselected package libjbig0:amd64. 209s Preparing to unpack .../105-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 209s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 209s Selecting previously unselected package libwebp7:amd64. 209s Preparing to unpack .../106-libwebp7_1.5.0-0.1_amd64.deb ... 209s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 209s Selecting previously unselected package libtiff6:amd64. 209s Preparing to unpack .../107-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 209s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 209s Selecting previously unselected package libwebpdemux2:amd64. 209s Preparing to unpack .../108-libwebpdemux2_1.5.0-0.1_amd64.deb ... 209s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 209s Selecting previously unselected package libwebpmux3:amd64. 209s Preparing to unpack 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previously unselected package python-mdanalysis-doc. 210s Preparing to unpack .../120-python-mdanalysis-doc_2.8.0-4build1_all.deb ... 210s Unpacking python-mdanalysis-doc (2.8.0-4build1) ... 210s Selecting previously unselected package python3-all. 210s Preparing to unpack .../121-python3-all_3.13.2-2_amd64.deb ... 210s Unpacking python3-all (3.13.2-2) ... 210s Selecting previously unselected package python3.13-dev. 210s Preparing to unpack .../122-python3.13-dev_3.13.2-2_amd64.deb ... 210s Unpacking python3.13-dev (3.13.2-2) ... 210s Selecting previously unselected package python3-dev. 210s Preparing to unpack .../123-python3-dev_3.13.2-2_amd64.deb ... 210s Unpacking python3-dev (3.13.2-2) ... 210s Selecting previously unselected package python3-all-dev. 210s Preparing to unpack .../124-python3-all-dev_3.13.2-2_amd64.deb ... 210s Unpacking python3-all-dev (3.13.2-2) ... 210s Selecting previously unselected package python3.12-tk. 210s Preparing to unpack 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python3-pil:amd64 (11.1.0-5build1) ... 210s Selecting previously unselected package python3-cairo. 210s Preparing to unpack .../131-python3-cairo_1.26.1-2build2_amd64.deb ... 210s Unpacking python3-cairo (1.26.1-2build2) ... 211s Selecting previously unselected package python3-freetype. 211s Preparing to unpack .../132-python3-freetype_2.5.1-1_all.deb ... 211s Unpacking python3-freetype (2.5.1-1) ... 211s Selecting previously unselected package python3-rlpycairo. 211s Preparing to unpack .../133-python3-rlpycairo_0.3.0-3_all.deb ... 211s Unpacking python3-rlpycairo (0.3.0-3) ... 211s Selecting previously unselected package python3-reportlab. 211s Preparing to unpack .../134-python3-reportlab_4.3.1-1_all.deb ... 211s Unpacking python3-reportlab (4.3.1-1) ... 211s Selecting previously unselected package w3c-sgml-lib. 211s Preparing to unpack .../135-w3c-sgml-lib_1.3-3_all.deb ... 211s Unpacking w3c-sgml-lib (1.3-3) ... 211s Selecting previously unselected package python3-biopython. 211s 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to unpack .../152-python3-platformdirs_4.3.6-1_all.deb ... 212s Unpacking python3-platformdirs (4.3.6-1) ... 212s Selecting previously unselected package python3-fs. 212s Preparing to unpack .../153-python3-fs_2.4.16-7_all.deb ... 212s Unpacking python3-fs (2.4.16-7) ... 212s Selecting previously unselected package python3-lz4. 212s Preparing to unpack .../154-python3-lz4_4.4.0+dfsg-1build1_amd64.deb ... 212s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 212s Selecting previously unselected package python3-scipy. 212s Preparing to unpack .../155-python3-scipy_1.14.1-4ubuntu2_amd64.deb ... 212s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 212s Selecting previously unselected package python3-mpmath. 212s Preparing to unpack .../156-python3-mpmath_1.3.0-1_all.deb ... 212s Unpacking python3-mpmath (1.3.0-1) ... 212s Selecting previously unselected package python3-sympy. 212s Preparing to unpack .../157-python3-sympy_1.13.3-5_all.deb ... 212s Unpacking python3-sympy (1.13.3-5) ... 212s Selecting previously unselected package python3-ufolib2. 212s Preparing to unpack .../158-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 212s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 212s Selecting previously unselected package python3-unicodedata2. 212s Preparing to unpack .../159-python3-unicodedata2_15.1.0+ds-1build3_amd64.deb ... 212s Unpacking python3-unicodedata2 (15.1.0+ds-1build3) ... 212s Selecting previously unselected package unicode-data. 212s Preparing to unpack .../160-unicode-data_15.1.0-1_all.deb ... 212s Unpacking unicode-data (15.1.0-1) ... 213s Selecting previously unselected package python3-fonttools. 213s Preparing to unpack .../161-python3-fonttools_4.55.3-2build1_amd64.deb ... 213s Unpacking python3-fonttools (4.55.3-2build1) ... 213s Selecting previously unselected package sphinx-rtd-theme-common. 213s Preparing to unpack .../162-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 213s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 213s Selecting previously unselected package python3-mrcfile. 213s Preparing to unpack .../163-python3-mrcfile_1.5.4-2_all.deb ... 213s Unpacking python3-mrcfile (1.5.4-2) ... 213s Selecting previously unselected package python3-griddataformats. 213s Preparing to unpack .../164-python3-griddataformats_1.0.2-2_all.deb ... 213s Unpacking python3-griddataformats (1.0.2-2) ... 213s Selecting previously unselected package python3-gsd. 213s Preparing to unpack .../165-python3-gsd_3.4.2-2build1_amd64.deb ... 213s Unpacking python3-gsd (3.4.2-2build1) ... 213s Selecting previously unselected package python3-h5py-serial. 213s Preparing to unpack .../166-python3-h5py-serial_3.13.0-1_amd64.deb ... 213s Unpacking python3-h5py-serial (3.13.0-1) ... 213s Selecting previously unselected package python3-h5py. 213s Preparing to unpack .../167-python3-h5py_3.13.0-1_all.deb ... 213s Unpacking python3-h5py (3.13.0-1) ... 213s Selecting previously unselected package python3-sortedcontainers. 213s Preparing to unpack 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python3-kiwisolver (1.4.7-3build1) ... 213s Selecting previously unselected package python3-latexcodec. 213s Preparing to unpack .../174-python3-latexcodec_3.0.0-1_all.deb ... 213s Unpacking python3-latexcodec (3.0.0-1) ... 213s Selecting previously unselected package python3-matplotlib. 213s Preparing to unpack .../175-python3-matplotlib_3.8.3-7build1_amd64.deb ... 213s Unpacking python3-matplotlib (3.8.3-7build1) ... 214s Selecting previously unselected package python3-mda-xdrlib. 214s Preparing to unpack .../176-python3-mda-xdrlib_0.2.0-3_all.deb ... 214s Unpacking python3-mda-xdrlib (0.2.0-3) ... 214s Selecting previously unselected package python3-msgpack. 214s Preparing to unpack .../177-python3-msgpack_1.0.3-3build4_amd64.deb ... 214s Unpacking python3-msgpack (1.0.3-3build4) ... 214s Selecting previously unselected package python3-mmtf. 214s Preparing to unpack .../178-python3-mmtf_1.1.3-1_all.deb ... 214s Unpacking python3-mmtf (1.1.3-1) ... 214s Selecting previously unselected package python3-threadpoolctl. 214s Preparing to unpack .../179-python3-threadpoolctl_3.1.0-1_all.deb ... 214s Unpacking python3-threadpoolctl (3.1.0-1) ... 214s Selecting previously unselected package python3-tqdm. 214s Preparing to unpack .../180-python3-tqdm_4.67.1-2_all.deb ... 214s Unpacking python3-tqdm (4.67.1-2) ... 214s Selecting previously unselected package python3-mdanalysis. 214s Preparing to unpack .../181-python3-mdanalysis_2.8.0-4build1_amd64.deb ... 214s Unpacking python3-mdanalysis (2.8.0-4build1) ... 214s Selecting previously unselected package sphinx-common. 214s Preparing to unpack .../182-sphinx-common_8.1.3-4_all.deb ... 214s Unpacking sphinx-common (8.1.3-4) ... 214s Selecting previously unselected package python3-alabaster. 214s Preparing to unpack .../183-python3-alabaster_0.7.16-0.1_all.deb ... 214s Unpacking python3-alabaster (0.7.16-0.1) ... 214s Selecting previously unselected package python3-snowballstemmer. 214s Preparing to unpack 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python3-sphinxcontrib.bibtex (2.6.2-1) ... 278s Setting up python3-sphinx-sitemap (2.6.0-1) ... 278s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 278s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 279s Setting up python3-msmb-theme (1.2.0-4) ... 279s autopkgtest [20:23:00]: test test-mdanalysis: [----------------------- 280s skipping tests with SKIP_TEST_LIST=test_all_import[.analysis.hole2] journal.pcbi.1004568 280s ============================= test session starts ============================== 280s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 280s cachedir: .pytest_cache 280s hypothesis profile 'default' -> database=DirectoryBasedExampleDatabase(PosixPath('/tmp/autopkgtest.A6nBaZ/build.Bph/src/.hypothesis/examples')) 280s rootdir: /tmp/autopkgtest.A6nBaZ/build.Bph/src 280s plugins: typeguard-4.4.2, hypothesis-6.127.4 288s collecting ... collected 19667 items / 2 deselected / 6 skipped / 19665 selected 288s 288s testsuite/MDAnalysisTests/analysis/test_align.py::TestRotationMatrix::test_rotation_matrix_input[a0-b0-None-0.15785647734415692] PASSED [ 0%] 288s testsuite/MDAnalysisTests/analysis/test_align.py::TestRotationMatrix::test_rotation_matrix_input[a1-b1-weights1-0.13424643502242328] PASSED [ 0%] 288s testsuite/MDAnalysisTests/analysis/test_align.py::TestRotationMatrix::test_list_args PASSED [ 0%] 288s testsuite/MDAnalysisTests/analysis/test_align.py::TestRotationMatrix::test_exception PASSED [ 0%] 288s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_match[True] PASSED [ 0%] 288s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_match[False] PASSED [ 0%] 288s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_nomatch_atoms_raise[True] PASSED [ 0%] 289s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_nomatch_atoms_raise[False] PASSED [ 0%] 289s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_nomatch_residues_raise_empty[True] PASSED [ 0%] 289s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_nomatch_residues_raise_empty[False] PASSED [ 0%] 289s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_toggle_atom_mismatch_default_error PASSED [ 0%] 289s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_toggle_atom_mismatch_kwarg_error PASSED [ 0%] 290s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_toggle_atom_nomatch PASSED [ 0%] 290s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_toggle_atom_nomatch_mismatch_atoms PASSED [ 0%] 290s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_subselection_alignto[resname ALA and name CA-expectation0] PASSED [ 0%] 290s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_subselection_alignto[subselection1-expectation1] PASSED [ 0%] 290s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_subselection_alignto[1234-expectation2] PASSED [ 0%] 290s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_no_atom_masses PASSED [ 0%] 290s testsuite/MDAnalysisTests/analysis/test_align.py::TestGetMatchingAtoms::test_one_universe_has_masses PASSED [ 0%] 291s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_rmsd PASSED [ 0%] 291s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_rmsd_custom_mass_weights PASSED [ 0%] 291s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_rmsd_custom_weights PASSED [ 0%] 291s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_outfile_default PASSED [ 0%] 291s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_outfile_default_exists PASSED [ 0%] 292s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_step_works PASSED [ 0%] 292s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_deprecated_attribute PASSED [ 0%] 292s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj PASSED [ 0%] 293s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_weighted PASSED [ 0%] 293s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_custom_weights PASSED [ 0%] 293s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_custom_mass_weights PASSED [ 0%] 294s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_partial_fit PASSED [ 0%] 294s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_in_memory PASSED [ 0%] 294s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_AlignTraj_writer_kwargs PASSED [ 0%] 294s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_alignto_checks_selections PASSED [ 0%] 295s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlign::test_alignto_partial_universe PASSED [ 0%] 295s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure_deprecated_attrs PASSED [ 0%] 296s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure PASSED [ 0%] 296s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure_mass_weighted PASSED [ 0%] 297s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure_select PASSED [ 0%] 298s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure_no_ref PASSED [ 0%] 298s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure_no_msf PASSED [ 0%] 298s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_mismatch_atoms PASSED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure_ref_frame PASSED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestAverageStructure::test_average_structure_in_memory PASSED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlignmentProcessing::test_importerror_biopython SKIPPED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlignmentProcessing::test_fasta2select_aligned PASSED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlignmentProcessing::test_fasta2select_file SKIPPED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlignmentProcessing::test_fasta2select_ClustalW SKIPPED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestAlignmentProcessing::test_fasta2select_resids PASSED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestSequenceAlignmentFunction::test_biopython_import_error SKIPPED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestSequenceAlignmentFunction::test_sequence_alignment PASSED [ 0%] 299s testsuite/MDAnalysisTests/analysis/test_align.py::TestSequenceAlignmentFunction::test_sequence_alignment_deprecation PASSED [ 0%] 300s testsuite/MDAnalysisTests/analysis/test_align.py::TestIterativeAverage::test_iterative_average_default PASSED [ 0%] 300s testsuite/MDAnalysisTests/analysis/test_align.py::TestIterativeAverage::test_iterative_average_eps_high PASSED [ 0%] 301s testsuite/MDAnalysisTests/analysis/test_align.py::TestIterativeAverage::test_iterative_average_weights_mass PASSED [ 0%] 302s testsuite/MDAnalysisTests/analysis/test_align.py::TestIterativeAverage::test_iterative_average_convergence_failure PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_align.py::TestIterativeAverage::test_iterative_average_convergence_verbose PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_align.py::test_alignto_reorder_atomgroups PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_atomicdistances.py::TestAtomicDistances::test_ad_exceptions PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_atomicdistances.py::TestAtomicDistances::test_ad_pairwise_dist PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_atomicdistances.py::TestAtomicDistances::test_ad_pairwise_dist_pbc PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_fails_incorrect_n_workers[BackendBase--1] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_fails_incorrect_n_workers[BackendSerial-None] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_fails_incorrect_n_workers[BackendMultiprocessing-string] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_fails_incorrect_n_workers[BackendDask-n_workers3] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_all_backends_give_correct_results[square-iterable0-answer0] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_all_backends_give_correct_results[square-iterable1-answer1] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_all_backends_give_correct_results[noop-iterable2-answer2] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_all_backends_give_correct_results[upper-asdf-answer3] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_get_warnings[BackendSerial-params0-n_workers is ignored when executing with backend='serial'] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_backends.py::Test_Backends::test_get_errors[BackendDask-params0-module 'dask' is missing. Please install 'dask': https://docs.dask.org/en/stable/install.html] PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_base.py::test_incompatible_n_workers PASSED [ 0%] 303s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[Parallelizable-not-existing-backend-2] PASSED [ 0%] 304s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[Parallelizable-not-existing-backend-None] PASSED [ 0%] 304s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[SerialOnly-not-existing-backend-2] PASSED [ 0%] 304s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[SerialOnly-not-existing-backend-None] PASSED [ 0%] 305s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[SerialOnly-multiprocessing-2] PASSED [ 0%] 305s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[SerialOnly-dask-None] PASSED [ 0%] 305s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[ParallelizableWithDaskOnly-multiprocessing-None] PASSED [ 0%] 306s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_fails[ParallelizableWithDaskOnly-multiprocessing-2] PASSED [ 0%] 306s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_works_when_unsupported_backend[Parallelizable-CustomSerialBackend-2] PASSED [ 0%] 306s testsuite/MDAnalysisTests/analysis/test_base.py::test_backend_configuration_works_when_unsupported_backend[ParallelizableWithDaskOnly-CustomSerialBackend-2] PASSED [ 0%] 307s testsuite/MDAnalysisTests/analysis/test_base.py::test_custom_backend_works[Parallelizable-CustomSerialBackend-1] PASSED [ 0%] 307s testsuite/MDAnalysisTests/analysis/test_base.py::test_custom_backend_works[ParallelizableWithDaskOnly-CustomSerialBackend-1] PASSED [ 0%] 307s testsuite/MDAnalysisTests/analysis/test_base.py::test_fails_incorrect_custom_backend[Parallelizable-map-1] PASSED [ 0%] 308s testsuite/MDAnalysisTests/analysis/test_base.py::test_fails_incorrect_custom_backend[SerialOnly-list-1] PASSED [ 0%] 308s testsuite/MDAnalysisTests/analysis/test_base.py::test_fails_incorrect_custom_backend[ParallelizableWithDaskOnly-object-1] PASSED [ 0%] 308s testsuite/MDAnalysisTests/analysis/test_base.py::test_fails_for_unparallelizable[SerialOnly-CustomSerialBackend-1] PASSED [ 0%] 309s testsuite/MDAnalysisTests/analysis/test_base.py::test_fails_for_unparallelizable[SerialOnly-multiprocessing-1] PASSED [ 0%] 309s testsuite/MDAnalysisTests/analysis/test_base.py::test_fails_for_unparallelizable[SerialOnly-dask-1] PASSED [ 0%] 309s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis0-run_kwargs0-frames0] PASSED [ 0%] 309s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis0-run_kwargs1-frames1] PASSED [ 0%] 309s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis0-run_kwargs2-frames2] PASSED [ 0%] 310s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis0-run_kwargs3-frames3] PASSED [ 0%] 310s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis0-run_kwargs0-frames0] PASSED [ 0%] 310s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis0-run_kwargs1-frames1] PASSED [ 0%] 311s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis0-run_kwargs2-frames2] PASSED [ 0%] 311s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis0-run_kwargs3-frames3] PASSED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis0-run_kwargs4-frames4] FAILED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs0] PASSED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs1] PASSED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs2] PASSED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs3] PASSED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs4] PASSED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs5] PASSED [ 0%] 312s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs6] PASSED [ 0%] 313s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_bool_fail[client_FrameAnalysis0] PASSED [ 0%] 313s testsuite/MDAnalysisTests/analysis/test_base.py::test_rewind[client_FrameAnalysis0] FAILED [ 0%] 313s testsuite/MDAnalysisTests/analysis/test_base.py::test_frames_times[client_FrameAnalysis0] FAILED [ 0%] 313s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs0-frames0] PASSED [ 0%] 313s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs1-frames1] PASSED [ 0%] 313s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs2-frames2] PASSED [ 0%] 313s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs3-frames3] PASSED [ 0%] 314s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs0-frames0] PASSED [ 0%] 314s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs1-frames1] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs2-frames2] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs3-frames3] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs4-frames4] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs0] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs1] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs2] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs3] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs4] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs5] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs6] PASSED [ 0%] 315s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_bool_fail[client_FrameAnalysis1] PASSED [ 0%] 316s testsuite/MDAnalysisTests/analysis/test_base.py::test_rewind[client_FrameAnalysis1] PASSED [ 0%] 316s testsuite/MDAnalysisTests/analysis/test_base.py::test_frames_times[client_FrameAnalysis1] PASSED [ 0%] 316s testsuite/MDAnalysisTests/analysis/test_base.py::test_reset_n_parts_to_n_frames FAILED [ 0%] 316s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs0-frames0] PASSED [ 0%] 316s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs1-frames1] PASSED [ 0%] 316s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs2-frames2] PASSED [ 0%] 316s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs3-frames3] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs0-frames0] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs1-frames1] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs2-frames2] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs3-frames3] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs4-frames4] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_parallelizable_transformations PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_instance_serial_backend PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_warn_nparts_nworkers FAILED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_not_parallelizable[AnalysisBase-False] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_not_parallelizable[AnalysisFromFunction-True] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_not_parallelizable[FrameAnalysis-True] PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar_run PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar_run_with_kwargs PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_progressbar_multiprocessing PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_incomplete_defined_analysis PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_old_api PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_filter_baseanalysis_kwargs_VE PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_filter_baseanalysis_kwargs PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_results_type PASSED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-None-None-2-49] FAILED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-None-50-2-25] FAILED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-2-15] FAILED [ 0%] 317s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-None-30] FAILED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction_args_content[client_AnalysisFromFunction0] FAILED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-None-2-49] PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-50-2-25] PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-2-15] PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-None-30] PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction_args_content[client_AnalysisFromFunction1] PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_analysis_class[client_AnalysisFromFunctionAnalysisClass0] PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_base.py::test_analysis_class_decorator PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_root_selection PASSED [ 0%] 318s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_number_of_frames[client_BAT0] ERROR [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates[client_BAT0] ERROR [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates_single_frame[client_BAT0] FAILED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_reconstruction[client_BAT0] ERROR [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO[client_BAT0] ERROR [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_incorrect_dims[client_BAT0] ERROR [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_Cartesian_does_not_modify_input[client_BAT0] ERROR [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_number_of_frames[client_BAT1] PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates[client_BAT1] PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates_single_frame[client_BAT1] PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_reconstruction[client_BAT1] PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO[client_BAT1] PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_incorrect_dims[client_BAT1] PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_Cartesian_does_not_modify_input[client_BAT1] PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_nobonds PASSED [ 0%] 319s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_bad_initial_atom PASSED [ 0%] 320s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_disconnected_atom_group PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_multifragments_atomgroup PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q_folded PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q_unfolded PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r0-2-1] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r1-1-0] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r2-1-0.5] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r3-cutoff3-1] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r4-cutoff4-0] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r0-None-2-1] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r1-None-1-0] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r2-None-1-0.5] PASSED [ 0%] 321s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_contact_matrix PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_new_selection PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_valid_types[(resname ASP GLU) and (name OE* OD*)] PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_valid_types[(resname ARG LYS) and (name NH* NZ)] PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_contacts_selections PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[1] PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[ag1] PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[Universe] PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[USE UPDATING AG] PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_startframe PASSED [ 1%] 322s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_end_zero PASSED [ 1%] 323s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_slicing PASSED [ 1%] 323s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_folded PASSED [ 1%] 324s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_unfolded PASSED [ 1%] 324s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_hard_cut_method PASSED [ 1%] 324s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_radius_cut_method PASSED [ 1%] 324s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_own_method PASSED [ 1%] 324s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_own_method_no_array_cast PASSED [ 1%] 324s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_non_callable_method PASSED [ 1%] 324s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_distance_box[True-expected0] PASSED [ 1%] 325s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_distance_box[False-expected1] PASSED [ 1%] 325s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_warn_deprecated_attr PASSED [ 1%] 325s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_n_initial_contacts[datafiles0-0] PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_n_initial_contacts[datafiles1-41814] PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_q1q2 PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_data.py::test_all_exports PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_shape PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_edges PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_midpoints PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_delta PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_grid PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_origin PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_keyerror PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_attributeError PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_nolength PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_density_none PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_density_not_in_units PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_parameters_isdensity PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_grid_not_density PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_value_error PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_units_same_density_units PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_units_density PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_convert_length_same_length_units PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_convert_length_other_length_units PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_repr PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_length_edges PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_edges PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[float] PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[double] PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[int] PASSED [ 1%] 333s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[byte] PASSED [ 1%] 334s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_run[static] PASSED [ 1%] 334s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_run[dynamic] PASSED [ 1%] 335s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_sliced PASSED [ 1%] 335s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_eqbox PASSED [ 1%] 335s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_neqbox PASSED [ 1%] 336s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_boxshape PASSED [ 1%] 336s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_userdefn_padding PASSED [ 1%] 336s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_userdefn_smallgrid PASSED [ 1%] 337s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_shape PASSED [ 1%] 337s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_type PASSED [ 1%] 338s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_missing PASSED [ 1%] 338s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_xdim_type PASSED [ 1%] 338s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_xdim_nanvalue PASSED [ 1%] 339s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_noatomgroup PASSED [ 1%] 339s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_noatomgroup PASSED [ 1%] 339s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_results_deprecated PASSED [ 1%] 339s testsuite/MDAnalysisTests/analysis/test_density.py::TestGridImport::test_absence_griddata PASSED [ 1%] 339s testsuite/MDAnalysisTests/analysis/test_density.py::TestGridImport::test_presence_griddata PASSED [ 1%] 339s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_broken_molecules PASSED [ 1%] 340s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_broken_repaired_molecules PASSED [ 1%] 340s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_temperature PASSED [ 1%] 340s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_non_charges PASSED [ 1%] 340s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_non_neutral PASSED [ 1%] 340s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_free_charges PASSED [ 1%] 341s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_eg PASSED [ 1%] 341s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_dist_weights PASSED [ 1%] 341s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_dist_weights_frames PASSED [ 1%] 341s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_distvalues_ag_universe PASSED [ 1%] 341s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_distvalues_ag_select PASSED [ 1%] 342s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_different_steps PASSED [ 1%] 342s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_transform PASSED [ 1%] 342s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_long_traj PASSED [ 1%] 342s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_updating_atomgroup PASSED [ 1%] 342s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_not_universe_atomgroup_error PASSED [ 1%] 342s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_DistanceMatrix_attr_warning PASSED [ 1%] 342s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral[client_Dihedral0] FAILED [ 1%] 343s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_single_frame[client_Dihedral0] FAILED [ 1%] 343s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_atomgroup_list[client_Dihedral0] FAILED [ 1%] 343s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_enough_atoms[client_Dihedral0] PASSED [ 1%] 344s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_attr_warning[client_Dihedral0] FAILED [ 1%] 344s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral[client_Dihedral1] PASSED [ 1%] 344s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_single_frame[client_Dihedral1] PASSED [ 1%] 345s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_atomgroup_list[client_Dihedral1] PASSED [ 1%] 345s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_enough_atoms[client_Dihedral1] PASSED [ 1%] 345s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_attr_warning[client_Dihedral1] PASSED [ 1%] 345s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran[client_Ramachandran0] FAILED [ 1%] 346s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_single_frame[client_Ramachandran0] FAILED [ 1%] 346s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_residue_selections[client_Ramachandran0] FAILED [ 1%] 346s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_length[client_Ramachandran0] PASSED [ 1%] 347s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_unchecked[client_Ramachandran0] FAILED [ 1%] 347s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran[client_Ramachandran1] PASSED [ 1%] 347s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_single_frame[client_Ramachandran1] PASSED [ 1%] 348s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_residue_selections[client_Ramachandran1] PASSED [ 1%] 348s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_length[client_Ramachandran1] PASSED [ 1%] 348s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_unchecked[client_Ramachandran1] PASSED [ 1%] 349s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_protein_ends PASSED [ 1%] 349s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_None_removal PASSED [ 1%] 349s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_plot PASSED [ 1%] 350s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_attr_warning PASSED [ 1%] 350s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin[client_Janin0] FAILED [ 1%] 350s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_tpr[client_Janin0] FAILED [ 1%] 351s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_residue_selections[client_Janin0] FAILED [ 1%] 351s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin[client_Janin1] PASSED [ 1%] 351s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_tpr[client_Janin1] PASSED [ 1%] 352s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_residue_selections[client_Janin1] PASSED [ 1%] 352s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_single_frame PASSED [ 1%] 352s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_outside_protein_length PASSED [ 1%] 352s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_remove_residues PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_atom_selection PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_plot PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_attr_warning PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_class_is_parallelizable[Dihedral-True] PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_class_is_parallelizable[Ramachandran-True] PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_class_is_parallelizable[Janin-True] PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_supported_backends[Dihedral-backends0] PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_supported_backends[Ramachandran-backends1] PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_supported_backends[Janin-backends2] PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_np PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_sparse PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_box_numpy PASSED [ 1%] 353s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_box_sparse PASSED [ 1%] 354s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_pairwise_dist PASSED [ 1%] 355s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_pairwise_dist_box PASSED [ 1%] 356s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_pairwise_dist_offset_effect PASSED [ 1%] 357s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_offset_calculation PASSED [ 1%] 357s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_mismatch_exception PASSED [ 1%] 358s testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_simple_case_indices_only PASSED [ 1%] 358s testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_return_type[5.9] PASSED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_return_type[0.0] PASSED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] FAILED [ 1%] 359s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] FAILED [ 1%] 360s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] FAILED [ 1%] 361s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] FAILED [ 1%] 362s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] FAILED [ 1%] 363s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] FAILED [ 1%] 364s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP0] FAILED [ 1%] 364s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP0] FAILED [ 1%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP0] FAILED [ 1%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_without_hydrogen_fails[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 1%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_uneven_number_of_atoms_fails[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz] PASSED [ 1%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 1%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 1%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 2%] 365s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 2%] 366s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] PASSED [ 2%] 367s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 2%] 368s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 2%] 368s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP1] PASSED [ 2%] 369s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP1] PASSED [ 2%] 369s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP1] PASSED [ 2%] 369s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_without_hydrogen_fails[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 2%] 369s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_uneven_number_of_atoms_fails[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz] PASSED [ 2%] 369s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 2%] 369s testsuite/MDAnalysisTests/analysis/test_encore.py::test_moved_to_mdakit_warning PASSED [ 2%] 369s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_triangular_matrix PASSED [ 2%] 370s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_parallel_calculation FAILED [ 2%] 370s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition PASSED [ 2%] 370s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition_custom_weights PASSED [ 2%] 370s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_without_superimposition PASSED [ 2%] 370s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ensemble_superimposition PASSED [ 2%] 371s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ensemble_superimposition_to_reference_non_weighted PASSED [ 2%] 371s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_covariance_matrix PASSED [ 2%] 371s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_covariance_matrix_with_reference PASSED [ 2%] 373s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_to_self PASSED [ 2%] 375s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes PASSED [ 2%] 378s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_custom_weights PASSED [ 2%] 380s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_align PASSED [ 2%] 380s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_to_self PASSED [ 2%] 381s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces PASSED [ 2%] 381s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_to_self PASSED [ 2%] 382s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres PASSED [ 2%] 382s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_without_superimposition XPASS [ 2%] 383s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_convergence PASSED [ 2%] 383s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_convergence PASSED [ 2%] 385s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_error_estimation XPASS [ 2%] 386s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_error_estimation PASSED [ 2%] 389s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_error_estimation_ensemble_bootstrap PASSED [ 2%] 391s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_error_estimation PASSED [ 2%] 391s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_one_ensemble PASSED [ 2%] 392s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_ensembles PASSED [ 2%] 392s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_three_ensembles_two_identical PASSED [ 2%] 393s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_methods PASSED [ 2%] 393s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_AffinityPropagationNative_direct PASSED [ 2%] 393s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_AffinityPropagation_direct PASSED [ 2%] 393s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_KMeans_direct PASSED [ 2%] 393s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_DBSCAN_direct PASSED [ 2%] 393s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_different_methods PASSED [ 2%] 394s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_method_w_no_distance_matrix PASSED [ 2%] 394s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_methods_one_w_no_distance_matrix PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_sklearn_affinity_propagation PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_init PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_Cluster_init PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_get_ids PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_get_centroids PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_add_metadata PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_empty_cluster PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_centroid_not_in_elements PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_metadata_size_error PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_iteration PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_len PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_repr PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClusteringSklearn::test_one PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_one_ensemble PASSED [ 2%] 395s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_ensembles PASSED [ 2%] 396s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_three_ensembles_two_identical PASSED [ 2%] 397s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_specified_dimension PASSED [ 2%] 397s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_SPENative_direct PASSED [ 2%] 397s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_PCA_direct PASSED [ 2%] 397s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_different_method PASSED [ 2%] 398s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_methods PASSED [ 2%] 398s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_different_methods PASSED [ 2%] 399s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreConfDistMatrix::test_get_distance_matrix PASSED [ 2%] 399s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreImportWarnings::test_import_warnings PASSED [ 2%] 399s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis0] FAILED [ 2%] 399s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis0] FAILED [ 2%] 400s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis0] FAILED [ 2%] 400s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] FAILED [ 2%] 400s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis1] PASSED [ 2%] 401s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis1] PASSED [ 2%] 404s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis1] PASSED [ 2%] 406s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis1] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_generate_kirchoff PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_SVD_fail PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_plane_circle PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_ortho_circle PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_around_circle PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_around_circle_rising PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_parallel_axes PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis0-screw_angles0] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis1-screw_angles1] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis2-screw_angles2] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis3-screw_angles3] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis4-screw_angles4] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis5-screw_angles5] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis6-screw_angles6] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis7-screw_angles7] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis8-screw_angles8] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis9-screw_angles9] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis10-screw_angles10] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis11-screw_angles11] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis12-screw_angles12] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis13-screw_angles13] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis14-screw_angles14] PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_square_oct PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_summary PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_values PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_multiple_selections PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_universe_from_origins PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_universe_from_origins_except PASSED [ 2%] 407s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_multiple_atoms_per_residues PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_residue_gaps_split PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_residue_gaps_no_split PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_len_groups_short PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis0-screw_angles0] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis1-screw_angles1] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis2-screw_angles2] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis3-screw_angles3] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis4-screw_angles4] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis5-screw_angles5] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis6-screw_angles6] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis7-screw_angles7] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis8-screw_angles8] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis9-screw_angles9] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis10-screw_angles10] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis11-screw_angles11] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis12-screw_angles12] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis13-screw_angles13] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis14-screw_angles14] PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_vector_of_best_fit PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hole2.py::test_moved_to_mdakit_warning SKIPPED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_continuous PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_continuous_excl PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent_timecut PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent_excl PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_continuous PASSED [ 2%] 408s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_intermittent PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_wronglength_DA PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_exclusions PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_bond_type_VE PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_repr PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::test_find_donors PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::test_donors_nobonds PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous_excl PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_timecut PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_excl PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_continuous PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_intermittent PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_wronglength_DA PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_exclusions PASSED [ 2%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_bond_type_VE PASSED [ 3%] 409s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_repr PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_deprecation_warning PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_donors PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_donors_nobonds PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_hydrogen_donors_deprecation_warning PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_moved_module_warning PASSED [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis0] ERROR [ 3%] 410s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis0] FAILED [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis0] FAILED [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis0] FAILED [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis0] FAILED [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis0] FAILED [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis0] ERROR [ 3%] 411s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] ERROR [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis0] FAILED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis0] FAILED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_bond_info_exception PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_bond_donor_sel PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_attr_hbonds PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_bond_info_exception PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_bond_donor_sel PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_attr_hbonds PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_hydrogen_bonds PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessDonors_NoTopology::test_guess_donors PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens_empty_selection PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens_min_max_mass PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[donors_sel] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[hydrogens_sel] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[acceptors_sel] PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_leaflet.py::test_optional_nx SKIPPED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_leaflet_finder PASSED [ 3%] 412s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_string_vs_atomgroup_proper PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_optimize_cutoff PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_pbc_on_off PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_pbc_on_off_difference PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[True] PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[False] PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[None] PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_cutoff_update PASSED [ 3%] 413s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_cutoff_update_default PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_write_selection PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_component_index_is_not_none PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_invalid_grouping PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[atoms-expected_masses0-expected_charges0-expected_xmass0-expected_xcharge0] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[residues-expected_masses1-expected_charges1-expected_xmass1-expected_xcharge1] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[segments-expected_masses2-expected_charges2-expected_xmass2-expected_xcharge2] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[fragments-expected_masses3-expected_charges3-expected_xmass3-expected_xcharge3] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_updating_atomgroup PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_old_name_deprecations PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_parallel_analysis PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::test_notidynamics PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_selection_works PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_ag_accepted PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_updating_ag_rejected PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[foo] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[bar] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[yx] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[zyx] PASSED [ 3%] 414s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xyz-3] PASSED [ 3%] 415s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xy-2] PASSED [ 3%] 415s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xz-2] PASSED [ 3%] 415s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[yz-2] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[x-1] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[y-1] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[z-1] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xyz-3] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xy-2] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xz-2] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[yz-2] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[x-1] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[y-1] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[z-1] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_random_walk_u_simple PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_default SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_default_per_particle SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xyz] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xy] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xz] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[yz] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[x] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[y] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[z] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xyz] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xy] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xz] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[yz] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[x] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[y] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[z] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xyz-3] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xy-2] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xz-2] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[yz-2] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[x-1] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[y-1] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[z-1] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xyz-3] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xy-2] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xz-2] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[yz-2] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[x-1] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[y-1] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[z-1] SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_random_walk_u_fft SKIPPED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_empty_ag_error PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_shape PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_results_keys PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_invalid_residue_types PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_selection_length_mismatch PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_deprecation_warning PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_strand_verification PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[0] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[1] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[2] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[parsnips] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[time] PASSED [ 3%] 416s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[-1] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_minor_dist PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_major_dist PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_wc_pair[1-2-RNAA-RNAA-4.3874702] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_wc_pair[22-23-RNAA-RNAA-4.1716404] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_minor_pair[3-17-RNAA-RNAA-15.06506] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_minor_pair[20-5-RNAA-RNAA-3.219116] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_major_pair[2-12-RNAA-RNAA-26.884272] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_major_pair[5-9-RNAA-RNAA-13.578535] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-9-3.16497] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-21-22.07721] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_as[RNAA-1-359.5758] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_as[RNAA-11-171.71645] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors[RNAA-5-expected_value0] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors[RNAA-21-expected_value1] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_alpha[RNAA-6-279.15103] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_alpha[RNAA-18-298.09936] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_beta[RNAA-7-184.20501] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_beta[RNAA-15-169.70042] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_gamma[RNAA-7-52.72022] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_gamma[RNAA-15-54.59684] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_delta[RNAA-7-84.80554] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_delta[RNAA-15-82.00043] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_eps[RNAA-7-200.4099] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_eps[RNAA-15-210.96953] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_zeta[RNAA-7-297.84736] PASSED [ 3%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_zeta[RNAA-15-330.24898] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-1-178.37435] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-2-202.03418] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-7-200.91674] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-15-209.32109] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-20-103.07024] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-5-156.62223] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-7-77.94538] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-15-130.18539] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_pseudo_dihe_baseflip[16-2-3-RNAA-RNAA-RNAA-314.69804] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_pseudo_dihe_baseflip[8-9-10-RNAA-RNAA-RNAA-34.50106] PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cov PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cum_var PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pcs PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pcs_n_components PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_different_steps PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_different_atoms PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_rerun PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_not_run PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_no_frames PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_can_run_frames PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_mismatch PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_universe PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_no_pca_run PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_none_anchor PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_more_anchor PASSED [ 4%] 417s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_less_anchor PASSED [ 4%] 418s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_invalid_anchor PASSED [ 4%] 418s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_compare_projections PASSED [ 4%] 418s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_reconstruct_whole PASSED [ 4%] 418s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-0] PASSED [ 4%] 418s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-n21] PASSED [ 4%] 418s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[n12-n22] PASSED [ 4%] 418s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-1] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[1-0] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_extrapolate_translation PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cosine_content PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_mean_shape PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_calculate_mean PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_given_mean PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_wrong_num_given_mean PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_alignment PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_covariance_norm PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_rmsip_self PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_rmsip_ortho PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pytest_too_many_components PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_asymmetric_rmsip PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_cumulative_overlap_self PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cumulative_overlap_ortho PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_other[rmsip] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_other[cumulative_overlap] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_self[rmsip] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_self[cumulative_overlap] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_wrong_class[rmsip] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_wrong_class[cumulative_overlap] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[p_components] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[variance] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[cumulated_variance] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_class_is_parallelizable[PCA-False] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_pca.py::test_supported_backends[PCA-backends0] PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_ag_ValueError PASSED [ 4%] 419s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_run PASSED [ 4%] 420s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_lb PASSED [ 4%] 420s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_fit PASSED [ 4%] 420s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_raise_NoDataError PASSED [ 4%] 420s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_plot_ax_return PASSED [ 4%] 421s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_plot_with_ax PASSED [ 4%] 421s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_current_axes PASSED [ 4%] 421s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[lb] PASSED [ 4%] 421s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[lp] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[fit] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestFitExponential::test_fit_simple PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestFitExponential::test_fit_noisy PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_missing_bonds PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_sortbb PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_not_fragment PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_branches PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_circular PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_psa.py::test_moved_to_mdakit_warning SKIPPED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_nbins PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_range PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_count_sum PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_count PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_double_run PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_exclusion PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[residue-8] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[segment-0] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[chain-8] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues_fails PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[rdf] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[bins] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[edges] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[count] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[density-1.956823] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[rdf-244602.88385] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[none-4] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm_values[Density-density] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm_values[None-none] PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_unknown_norm PASSED [ 4%] 422s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_nbins PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_range PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_count_size PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_count PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_double_run PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_cdf PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[None-26551.55088100731] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[False-26551.55088100731] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[True-0.021915460340071267] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_overwrite_norm PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[density-0.021915460340071267] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[rdf-26551.55088100731] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[none-0.6] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm_values[Density-density] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm_values[None-none] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_unknown_norm PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[rdf] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[bins] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[edges] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[count] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[cdf] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_get PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_no_attr PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_set_attr PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_set_key PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[_MutableMapping__marker] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__abstractmethods__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__class__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__class_getitem__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__contains__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__copy__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__delattr__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__delitem__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__dict__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__dir__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__doc__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__eq__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__firstlineno__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__format__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ge__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__getattribute__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__getitem__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__getstate__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__gt__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__hash__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__init__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__init_subclass__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ior__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__iter__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__le__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__len__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__lt__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__module__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ne__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__new__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__or__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__reduce__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__reduce_ex__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__repr__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__reversed__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ror__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__setattr__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__setitem__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__sizeof__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__slots__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__static_attributes__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__str__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__subclasshook__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__weakref__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[_abc_impl] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[clear] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[copy] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[fromkeys] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[get] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[items] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[keys] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[pop] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[popitem] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[setdefault] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[update] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[values] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[data] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[_MutableMapping__marker] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__abstractmethods__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__class__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__class_getitem__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__contains__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__copy__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__delattr__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__delitem__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__dict__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__dir__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__doc__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__eq__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__firstlineno__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__format__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ge__] PASSED [ 4%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__getattribute__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__getitem__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__getstate__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__gt__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__hash__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__init__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__init_subclass__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ior__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__iter__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__le__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__len__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__lt__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__module__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ne__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__new__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__or__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__reduce__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__reduce_ex__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__repr__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__reversed__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ror__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__setattr__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__setitem__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__sizeof__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__slots__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__static_attributes__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__str__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__subclasshook__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__weakref__] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[_abc_impl] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[clear] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[copy] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[fromkeys] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[get] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[items] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[keys] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[pop] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[popitem] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[setdefault] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[update] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[values] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[data] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[0123] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[0j] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[1.1] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[{}] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[a b] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_setattr_modify_item PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_setitem_modify_item PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_delattr PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_missing_delattr PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_pop PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_update PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_update_data_fail PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_pickle PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args0-kwargs0-1] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args1-kwargs1-1] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args2-kwargs2-2] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args3-kwargs3-1] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_different_instances PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[1] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[2] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[5] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[14] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_p_frames PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_no_center PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_center PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_list PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_superposition[float32] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_superposition[float64] PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights_and_superposition_1 PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights_and_superposition_2 PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_unequal_shape PASSED [ 5%] 423s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_wrong_weights PASSED [ 5%] 424s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_smaller PASSED [ 5%] 424s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_equal PASSED [ 5%] 424s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD0] FAILED [ 5%] 424s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD0] FAILED [ 5%] 424s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD0] FAILED [ 5%] 424s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD0] FAILED [ 5%] 424s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD0] FAILED [ 5%] 425s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD0] FAILED [ 5%] 426s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD0] FAILED [ 5%] 426s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD0] FAILED [ 5%] 426s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD1] PASSED [ 5%] 426s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD1] PASSED [ 5%] 426s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD1] PASSED [ 5%] 426s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD1] PASSED [ 5%] 427s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD1] PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD1] PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_scalar_weights_raises_ValueError PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_string_weights_raises_ValueError PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_mismatched_weights_raises_ValueError PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_misuse_weights_for_groupselection_raises_TypeError PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_mismatched_weights_in_groupselection_raises_ValueError PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_list_of_weights_wrong_length PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_length_unequal_len PASSED [ 5%] 428s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_mismatches PASSED [ 5%] 429s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_group_selections_unequal_len PASSED [ 5%] 429s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf[client_RMSF0] PASSED [ 5%] 429s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_single_frame[client_RMSF0] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_identical_frames[client_RMSF0] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_attr_warning[client_RMSF0] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_rms.py::test_class_is_parallelizable[RMSD-True] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_rms.py::test_class_is_parallelizable[RMSF-False] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_rms.py::test_supported_backends[RMSD-backends0] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_rms.py::test_supported_backends[RMSF-backends1] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_moved_to_mdakit_warning SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_nodata PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_selection_type_error PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_distance_type_error PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_selection2_type_error PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_empty_selection PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_loop PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter_pbc[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter_pbc[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_accepter_donor[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_accepter_donor[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_empty PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_same_selection PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_3water_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_3water_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_4water_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_4water_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_22water_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_22water_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_timeseries_wba PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_timeseries_hba PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_12water_accepter[hydrogen] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_12water_accepter[heavy] PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_single_link PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_multiple_link PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_multiple_frame PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_filter PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_merge PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_order PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_time PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_time_weight PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_time_empty PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_generate_table_hba PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_generate_table_s1s2 PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_timesteps_by_type PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_duplicate_water PASSED [ 5%] 430s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_warn_results_deprecated PASSED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_none PASSED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_wrong_auxdata PASSED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_wrong_format PASSED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_notimplemented_read_next_timestep PASSED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_notimplemented_memory_usage PASSED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::test_pyedr_not_present_raises PASSED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_raise_error_no_auxdata_provided SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_n_steps SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_dt SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_initial_time SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_first_step SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_next SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_rewind SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_move_to_step SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_last_step SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_next_past_last_step_raises_StopIteration SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_move_to_invalid_step_raises_IndexError SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_invalid_step_to_time_raises_ValueError SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iter SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iter_list SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iter_slice SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_start_after_stop_raises_IndexError SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_out_of_range_raises_IndexError SKIPPED [ 5%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_non_int_raises_TypeError SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_bad_represent_raises_ValueError SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_time_selector SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_time_selector_manual SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_data_selector SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_no_constant_dt SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_update_ts_without_auxname_raises_ValueError SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_closest_with_cutoff SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_auxreader_for SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_auxiliary_read_ts_rewind SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_description SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_load_from_description SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_out_of_bounds SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_no_time_diff SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_go_to_step_fail SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_set_constant_dt[True] SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_set_constant_dt[False] SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_copy SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_time_non_constant_dt SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iterate_through_trajectory SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iterate_as_auxiliary_from_trajectory SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_time_diff SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_lower_freq_timestep SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_higher_freq_timestep SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_offset_timestep SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_average SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_average_with_cutoff SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_all_terms_from_file SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_all_terms_from_reader SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_term_list_custom_names_from_file SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_term_list_custom_names_from_reader SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_raise_error_if_auxname_already_assigned SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_single_term_custom_name_from_file SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_single_term_custom_name_from_reader SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_terms_update_on_iter SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_invalid_data_selector SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_all_times SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_from_string SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_from_list SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_everything SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[42] SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[Not a valid term] SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[get_data_input2] SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warning_when_space_in_aux_spec SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warn_too_much_memory_usage SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_auxreader_picklable SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_units_are_converted_by_EDRReader SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warning_when_unknown_unit SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_unit_conversion_is_optional SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_edr.py::test_single_frame_input_file SKIPPED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_time_none PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_time_invalid_index PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_data_none PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_raise_error_no_auxdata_provided PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_n_steps PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_dt PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_initial_time PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_first_step PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_next PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_rewind PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_move_to_step PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_last_step PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_next_past_last_step_raises_StopIteration PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_move_to_invalid_step_raises_IndexError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_invalid_step_to_time_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iter PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iter_list PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iter_slice PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_start_after_stop_raises_IndexError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_out_of_range_raises_IndexError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_non_int_raises_TypeError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_bad_represent_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_selector PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_non_constant_dt PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_selector_manual PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_data_selector PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_no_constant_dt PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_update_ts_without_auxname_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_lower_freq_timestep PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_average PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_average_with_cutoff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_offset_timestep PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_closest_with_cutoff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_higher_freq_timestep PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_get_auxreader_for PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iterate_through_trajectory PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iterate_as_auxiliary_from_trajectory PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_auxiliary_read_ts_rewind PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_get_description PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_load_from_description PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_out_of_bounds PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_no_time_diff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_time_diff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_go_to_step_fail PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_set_constant_dt[True] PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_set_constant_dt[False] PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_copy PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_changing_n_col_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_selector_out_of_range_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_data_selector_out_of_range_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_raise_error_no_auxdata_provided PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_n_steps PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_dt PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_initial_time PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_first_step PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_next PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_rewind PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_move_to_step PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_last_step PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_next_past_last_step_raises_StopIteration PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_move_to_invalid_step_raises_IndexError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_invalid_step_to_time_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iter PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iter_list PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iter_slice PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_start_after_stop_raises_IndexError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_out_of_range_raises_IndexError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_non_int_raises_TypeError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_bad_represent_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_selector PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_non_constant_dt PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_selector_manual PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_data_selector PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_no_constant_dt PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_update_ts_without_auxname_raises_ValueError PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_lower_freq_timestep PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_average PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_average_with_cutoff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_offset_timestep PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_closest_with_cutoff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_higher_freq_timestep PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iterate_through_trajectory PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iterate_as_auxiliary_from_trajectory PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_auxiliary_read_ts_rewind PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_get_description PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_load_from_description PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_out_of_bounds PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_no_time_diff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_time_diff PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_go_to_step_fail PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_set_constant_dt[True] PASSED [ 6%] 430s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_set_constant_dt[False] PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_copy PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_changing_n_col_raises_ValueError PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_selector_out_of_range_raises_ValueError PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_data_selector_out_of_range_raises_ValueError PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_get_auxreader_for PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_reopen PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::test_xvg_bz2 PASSED [ 6%] 431s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::test_xvg_file_bz2 PASSED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_base.py::test_coordinate_converterbase_warning PASSED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_base.py::test_converters_converterbase_no_warning PASSED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRequiresRDKit::test_converter_requires_rdkit PASSED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_coordinates[mol2_mol-1] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_coordinates[smiles_mol-3] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_no_coordinates SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_compare_mol2reader SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_no_atoms_attr SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[[H]] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[C] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[O] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[[He]] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[PRO-14-1] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[ILE-38-1] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[ALA-20-2] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[GLY-21-3] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resid 1-0] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resname LYS and name NZ-1] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resid 34 and altloc B-2] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_identical_topology[mol2_mol] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_identical_topology[smiles_mol] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_raise_requires_elements SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_warn_guess_bonds SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_bonds_outside_sel SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_error_no_hydrogen SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_error_no_hydrogen_implicit SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_warning_no_hydrogen_force SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-N- N ] SKIPPED [ 6%] 431s 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testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[tempfactors-0.8-0.8] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[0] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[10] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[42] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname ALA] SKIPPED [ 6%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname PRO and segid A] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_coordinates SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_stereochemistry SKIPPED [ 7%] 431s 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testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C-[C](-[H])-[O]-C(=O)C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[H]-[C](-[O])-[N](-[H])-[H]-C(=O)N] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[N]-[C]-[H]-N#C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C-[C](-[O]-[H])-[O]-CC(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O]-[H])(-[O]-[H])-[O]-P(O)(O)(O)=O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O]-[H])(-[O])-[O]-P([O-])(O)(O)=O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O])(-[O])-[O]-P([O-])([O-])(O)=O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O])(-[O])(-[O])-[O]-P([O-])([O-])([O-])=O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[H]-[O]-[N]-[O]-ON=O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[N]-[C]-[O]-N#C[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[C](-[H])(-[H])(-[H])-[O]-4--1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[N]-[C]-[O]-2--1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[N](-[H])(-[H])(-[H])-[H]-0-1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[C-[C](-[O])-[O]-3--1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O]-[H])(-[O]-[H])(-[O])-[O]-S(=O)(=O)(O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O]-[H])(-[O])(-[O])-[O]-S(=O)(=O)([O-])O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O])(-[O])(-[O])-[O]-S(=O)(=O)([O-])[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C-[N](-[H])-[C](-[N](-[H])-[H])-[N](-[H])-[H]-CNC(N)=[N+](-[H])-[H]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[O]-[C](-[H])-[C](-[H])-[H]-C([O-])=C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C-[N](-[O])-[O]-C[N+](=O)[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C(-[N](-[O])-[O])-[N](-[O])-[O]-C([N+](=O)[O-])[N+](=O)[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C-[N](-[O])-[O].C-[N](-[O])-[O]-C[N+](=O)[O-].C[N+](=O)[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[C-](=O)-C-[C](=O)-C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[H]-[N-]-C-[H]-[N]-C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[O]-[C]1-[C](-[H])-[C](-[H])-[C](-[H])-[C](-[H])-[C](-[H])1-[O-]c1ccccc1] SKIPPED [ 7%] 431s 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testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc(cc1)-c1ccccc1-c1ccccc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1cc[nH]c1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc(cc1)-c1ccc(-c2ccccc2)c(-c2ccccc2)c1-c1ccccc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc2c(c1)c1ccccc1c1ccccc1c1ccccc1c1ccccc21] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1csc(c1)-c1ccoc1-c1cc[nH]c1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C1=C2C(=NC=N1)N=CN2] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CN1C=NC(=C1SC2=NC=NC3=C2NC=N3)[N+](=O)[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1c[nH]c(c1)-c1ccc(s1)-c1ccoc1-c1c[nH]cc1-c1ccccc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C=CC=CC=CC=CC=CC=C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCCCCC([NH3+])C(=O)[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C=CC1=C(C)CCCC1(C)C)=CC=CC(C)=CC=[NH+]C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C#CC=C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=CNC=N1)N)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=CN=CN1)N)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CCOC(=O)c1cc2cc(C(=O)O)ccc2[nH]1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-][n+]1cccnc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1ccccc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[PH4+]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1nc[nH]n1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(=O)C=C(C)N] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)=CC=C[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=S(C)(C)=NC] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1ccc2c3ncn(Cc4ccco4)c(O)c-3nc2c1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CCCC/C=C/C#CC#CCCCCCCCC(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1c2c(=O)n3cccc(C)c3nc2n(C)c(=N)c1C(=O)NCc1cnccc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N#Cc1c[nH]c(C(=O)NC(=O)c2cc[n+]([O-])cc2)n1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@@H](Oc1cc(F)ccc1Nc1ncnc2cc(N=S3(=O)CCC3)cc(F)c12)C(=O)NCC#N] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-][n+]1onc2ccccc21] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1cc[n+](CC[n+]2ccc(C)cc2)cc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]c1ccccc1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]C=CC=CCC=CC=[N+](C)C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C=[N+](-[O-])-C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C-[N-]-C(=O)C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCC(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC[C@H](C)[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)C[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C(O)[C@@H]1CCCN1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1ccccc1)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1c[nH]c2ccccc12)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1ccc(O)cc1)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CC(=O)O)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CCC(=O)O)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N=C(N)NCCC[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1c[nH]cn1)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCCCC[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CO)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@@H](O)[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CS)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CSCC[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NC(=O)C[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NC(=O)CC[C@H](N)C(=O)O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1ncnc2c1ncn2[C@H]1C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1cn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]c1=O] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=c1ccn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1ccn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)n1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1nc2c(ncn2[C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]1] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)NS(C)(=O)=Nc1ccc(-c2ccc(-c3nc4[nH]c(O[C@@H]5CO[C@@H]6[C@H](O)CO[C@H]56)nc4cc3Cl)cc2)cc1 CHEMBL4111464] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1c2ccccc2c(C(=O)O)c2[nH]c3ccc(Br)cc3c21 CHEMBL511591] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1ccccc1-c1ccc(NC(=O)c2ccc(C(=O)Nc3ccc(-c4cccc[n+]4C)cc3)cc2)cc1 CHEMBL3230729] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1ccc(/C(O)=C(/C([S-])=NCc2ccccc2)[n+]2cccc(CO)c2)cc1[N+](=O)[O-] CHEMBL1596426] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)(O)c1cc2c(cc1C(C)(C)O)-c1ccccc1-2 CHEMBL1990966] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]/N=C1/c2ccccc2-c2nc3ccc(C(F)(F)F)cc3nc21 CHEMBL4557878] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N#Cc1c[nH]c(C(=O)Nc2ccc(-c3cccc[n+]3[O-])cc2C2=CCCCC2)n1 CHEMBL1172116] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[N+]#N] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-N=[N+]=[N-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[O+]=C] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[N+]#[C-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_warn_conjugated_max_iter SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Li+]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Na+]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[K+]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Rb+]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ag+]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cs+]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Mg+2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ca+2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cu+2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Zn+2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Sr+2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ba+2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Al+3]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Fe+2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cl-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[O-2]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Na+].[Cl-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_reorder_atoms[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_reorder_atoms[O=S(C)(C)=NC] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_pdb_names SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F/C(Br)=C(Cl)/I] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F\\C(Br)=C(Cl)\\I] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F-C(Br)=C(Cl)-I] SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_atom_sorter SKIPPED [ 7%] 431s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_reader PASSED [ 7%] 431s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_universe_inpcrd PASSED [ 7%] 431s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_universe_restrt PASSED [ 7%] 431s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_regular_repr PASSED [ 7%] 431s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_truncated_repr PASSED [ 7%] 431s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_next_trajectory PASSED [ 7%] 431s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_n_atoms PASSED [ 7%] 432s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_n_frames PASSED [ 7%] 432s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_iteration PASSED [ 7%] 432s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_jump_lastframe_trajectory PASSED [ 7%] 432s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_slice_trajectory PASSED [ 7%] 432s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_full_slice PASSED [ 7%] 432s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_frame_numbering PASSED [ 7%] 433s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_next_after_frame_numbering PASSED [ 7%] 433s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_frame PASSED [ 7%] 433s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_time PASSED [ 7%] 433s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_write_dcd PASSED [ 7%] 435s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_iteration PASSED [ 7%] 435s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_slice PASSED [ 7%] 435s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_switch PASSED [ 7%] 436s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transfrom_rewind PASSED [ 7%] 436s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderCommonDt::test_time PASSED [ 7%] 436s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_format_tuples PASSED [ 7%] 436s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_format_lammps PASSED [ 7%] 438s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_format_tuples_and_format PASSED [ 7%] 438s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_one_format_tuple PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_formats PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info0-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info0-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info1-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info1-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info2-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info2-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info3-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info3-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info4-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info4-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info5-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info5-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info6-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info6-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info7-xtc] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info7-trr] PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_start_frames PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_missing PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_warning PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_interleaving_error PASSED [ 7%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_easy_trigger_warning PASSED [ 8%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_single_frames PASSED [ 8%] 440s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_mixed_filetypes PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_unsupported_filetypes PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l0-ref0] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l1-ref1] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l2-ref2] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l3-ref3] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l4-ref4] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l0-ref0] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l1-ref1] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l2-ref2] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l3-ref3] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l4-ref4] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l5-ref5] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l6-ref6] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l7-ref7] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l8-ref8] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l9-ref9] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l10-ref10] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l11-ref11] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l12-ref12] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l13-ref13] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l14-ref14] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_issue_4008 PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_issue_3349 PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader0] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader1] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader2] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader3] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader4] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader5] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader6] PASSED [ 8%] 441s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader7] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader8] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader9] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader10] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader11] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader12] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader13] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader14] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader15] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader16] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader17] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader18] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader19] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader20] PASSED [ 8%] 442s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader21] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader22] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader23] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader24] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader25] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader26] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader0] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader1] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader2] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader3] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader4] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader5] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader6] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader7] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader8] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader9] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader10] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader11] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader12] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader13] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader14] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader15] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader16] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader17] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader18] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader19] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader20] PASSED [ 8%] 444s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader21] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader22] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader23] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader24] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader25] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader26] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args0] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args1] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args2] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args3] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args4] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args5] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args6] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args7] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args8] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args9] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args10] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args11] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args12] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args13] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args14] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args15] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args16] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args17] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args18] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args19] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args20] PASSED [ 8%] 446s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args21] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args22] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args23] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args24] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args25] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args26] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader0] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader1] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader2] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader3] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader4] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader5] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader6] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader7] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader8] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader9] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader10] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader11] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader12] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader13] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader14] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader15] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader16] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader17] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader18] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader19] SKIPPED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader20] PASSED [ 8%] 448s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader21] PASSED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader22] PASSED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader23] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader24] PASSED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader25] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader26] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader0] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader1] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader2] PASSED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader3] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader4] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader5] PASSED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader6] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader7] PASSED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader8] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader9] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader10] PASSED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader11] SKIPPED [ 8%] 450s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader12] SKIPPED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader13] SKIPPED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader14] PASSED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader15] PASSED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader16] PASSED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader17] PASSED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader18] SKIPPED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader19] SKIPPED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader20] PASSED [ 8%] 451s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader21] PASSED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader22] PASSED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader23] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader24] PASSED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader25] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader26] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader0] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader1] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader2] PASSED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader3] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader4] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader5] PASSED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader6] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader7] PASSED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader8] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader9] SKIPPED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader10] PASSED [ 8%] 453s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader11] SKIPPED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader12] SKIPPED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader13] SKIPPED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader14] PASSED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader15] PASSED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader16] PASSED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader17] PASSED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader18] SKIPPED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader19] SKIPPED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader20] PASSED [ 8%] 454s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader21] SKIPPED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader22] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader23] SKIPPED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader24] SKIPPED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader25] SKIPPED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader26] SKIPPED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader0] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader1] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader2] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader3] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader4] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader5] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader6] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader7] PASSED [ 8%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader8] PASSED [ 9%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader9] PASSED [ 9%] 456s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader10] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader11] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader12] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader13] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader14] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader15] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader16] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader17] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader18] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader19] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader20] PASSED [ 9%] 457s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader21] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader22] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader23] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader24] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader25] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader26] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader0] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader1] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader2] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader3] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader4] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader5] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader6] PASSED [ 9%] 458s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader7] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader8] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader9] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader10] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader11] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader12] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader13] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader14] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader15] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader16] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader17] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader18] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader19] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader20] PASSED [ 9%] 459s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader21] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader22] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader23] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader24] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader25] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader26] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_no_pyedr PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_pyedr SKIPPED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.bz2] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.gz] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_roundtrip PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT_read PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resnames] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resids] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[names] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[tempfactors] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resnames] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resids] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[names] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[tempfactors] PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_atoms PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_frames PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_frame PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_double_close PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_1 PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_2 PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_dt PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_ts_dt_matches_reader PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_total_time PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_dimensions PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_changing_dimensions PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_volume PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_same_auxname_raises_ValueError PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_auxiliary PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_auxiliary PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_aux_attribute PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_as_aux_cutoff PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_reload_auxiliaries_from_description PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_stop_iter PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_iter PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_2iter PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_slice PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_switch_frame PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformation_rewind PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_copy PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_another_transformations_raises_ValueError PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_reader PASSED [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_collect_all_same XFAIL [ 9%] 461s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[fac] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[fca] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[afc] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[acf] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[caf] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[cfa] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice0] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice1] SKIPPED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice2] SKIPPED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_shape[index 1] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_shape[index 2] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_empty_asel PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_empty_atomgroup PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_warns_deprecation PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_atomgroup PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_atomgroup_asel_mutex PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_last_frame PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_go_over_last_frame PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_jump PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_jump_issue1942 PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_next_gives_second_frame PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_reopen PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_rename_aux PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_as_aux_highf PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_as_aux_lowf PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_rewinds[indexed] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_rewinds[sliced] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_rewinds[all] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_next_ts_reader PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_last_ts_reader PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_empty_dcd PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_with_statement PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_set_time PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[0] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[1] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[2] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[37] PASSED [ 9%] 462s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[None] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_different_box PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_trajectory_atomgroup PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_trajectory_universe PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_selection PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_none PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_no_container PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_not_changing_ts PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_random_unitcell PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_empty_dimension_warning PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_rewind PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_next PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_jump_last_frame PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_slice[5-17-3] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_slice[20-5--1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_array_like[list] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_array_like[array] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_list_indices[indices0] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_list_indices[indices1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice0-98] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice1-98] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice2-98] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice3-98] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice4-98] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice5-2] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice6-10] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice7-8] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice8-1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice9-0] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice10-1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice11-1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice12-2] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice13-1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice14-1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice15-2] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice16-4] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice17-3] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice18-2] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[fac-shape0] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[fca-shape1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[afc-shape2] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[acf-shape3] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[caf-shape4] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[cfa-shape5] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_atomindices[indices0] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_atomindices[indices1] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_atomindices[indices2] PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_reader_set_dt PASSED [ 9%] 463s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_dt[dcd-4] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_dt[xtc-3] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_DCDWriter_default[istart-0] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_DCDWriter_default[nsavc-1] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_other_writer[dcd-5] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_other_writer[xtc-2] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_single_frame PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_no_natoms PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_trajectory_no_natoms PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_read_unitcell_triclinic[RefCHARMMtriclinicDCD] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_read_unitcell_triclinic[RefNAMDtriclinicDCD] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_unitcell_triclinic[RefCHARMMtriclinicDCD] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_unitcell_triclinic[RefNAMDtriclinicDCD] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ncdf2dcd_unitcell PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ncdf2dcd_coords PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe0] PASSED [ 9%] 464s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe1] PASSED [ 9%] 465s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe2] PASSED [ 9%] 465s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe3] PASSED [ 9%] 465s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_pathlib PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_large_dcdfile SKIPPED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_read_unitcell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_positions PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_velocities PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_forces PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_read PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_read_unitcell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_positions PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_velocities PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_forces PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_positions PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_read_unitcell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_velocities PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_forces PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_names PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_pos PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_vel PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_for PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_number PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_names PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_pos PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_number PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_vel PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_for PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_len PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_getting PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_slicing PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_slicing_2 PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_position PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_velocity PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_force PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_unitcell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_len PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_getting PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_slicing PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_slicing_2 PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_position PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_velocity PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_force PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_unitcell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_len PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_getting PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_slicing PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_slicing_2 PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_position PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_velocity PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_force PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_unitcell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_len PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_getting PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_slicing PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_slicing_2 PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_position PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_unitcell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_velocity PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_force PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_global_cell PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_velocities PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_number_of_coords PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_coords_atom_0 PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_n_frames PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_time PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame PASSED [ 10%] 465s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame_index_0 PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame_index_1_raises_IndexError PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_single_file PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_uses_FHIAIMSReader PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_dimensions PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_n_atoms PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_fhiaims_positions PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_n_frames PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_time PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_missing_periodicity PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_relative_positions_no_box PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_missing_velocity PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_velocity_wrong_position PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_wrong_input_line PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_good_input_with_velocity PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_mixed_units PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_different_box PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_trajectory_atomgroup PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_trajectory_universe PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_selection PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_none PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_no_container PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_not_changing_ts PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_with_velocity PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_no_atom_names PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_with_n_atoms_none PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_n_frames PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_random_access PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_rewind PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_next PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_dt PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_step5distances PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_n_frames PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_random_access PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_rewind PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_next PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_dt PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_step5distances PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_n_frames PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_random_access PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_rewind PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_next PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_dt PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_step5distances PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_load_gro PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_coordinates PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_distances PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_selection PASSED [ 10%] 466s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_unitcell PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_coordinates PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_distances PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_unitcell PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_volume PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_n_atoms PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_n_frames PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_first_frame PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_double_close PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_writer_1 PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_writer_2 PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_dt PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_ts_dt_matches_reader PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_total_time PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_first_dimensions PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_changing_dimensions PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_volume PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_iter PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_add_same_auxname_raises_ValueError PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_remove_auxiliary PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_iter_auxiliary PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_aux_attribute PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_iter_as_aux_cutoff PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_reload_auxiliaries_from_description PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_stop_iter PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_iter PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_2iter PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_slice PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_switch_frame PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformation_rewind PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_copy PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_add_another_transformations_raises_ValueError PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_pickle_reader PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_frame_collect_all_same PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[fac] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[fca] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[afc] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[acf] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[caf] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[cfa] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_values[slice0] SKIPPED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_values[slice1] SKIPPED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_values[slice2] SKIPPED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_shape[index 1] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_shape[index 2] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_empty_asel PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_empty_atomgroup PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_warns_deprecation PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_atomgroup PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_atomgroup_asel_mutex PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_time PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_full_slice PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_different_box PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_trajectory_atomgroup PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_trajectory_universe PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_selection PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_none PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_no_container PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_not_changing_ts PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_velocities PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resnames PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resids PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_writer_no_atom_names PASSED [ 10%] 467s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_min PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_max PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_max_noconversion PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_n_atoms PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_n_frames PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_first_frame PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_double_close PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_writer_1 PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_writer_2 PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_dt PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_ts_dt_matches_reader PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_total_time PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_first_dimensions PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_changing_dimensions PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_volume PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_iter PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_add_same_auxname_raises_ValueError PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_remove_auxiliary PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 10%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_iter_auxiliary PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_aux_attribute PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_iter_as_aux_cutoff PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_reload_auxiliaries_from_description PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_stop_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_2iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_slice PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_switch_frame PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformation_rewind PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_copy PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_add_another_transformations_raises_ValueError PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_pickle_reader PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_frame_collect_all_same PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[fac] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[fca] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[afc] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[acf] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[caf] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[cfa] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_values[slice0] SKIPPED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_values[slice1] SKIPPED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_values[slice2] SKIPPED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_shape[index 1] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_shape[index 2] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_shape[index 1 to 3] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_empty_asel PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_empty_atomgroup PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_warns_deprecation PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_atomgroup PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_atomgroup_asel_mutex PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_different_box PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_trajectory_atomgroup PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_trajectory_universe PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_selection PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_none PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_no_container PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_not_changing_ts PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_n_atoms PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_n_frames PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_first_frame PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_double_close PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_writer_1 PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_writer_2 PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_dt PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_ts_dt_matches_reader PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_total_time PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_first_dimensions PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_changing_dimensions PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_volume PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_add_same_auxname_raises_ValueError PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_remove_auxiliary PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_iter_auxiliary PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_aux_attribute PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_iter_as_aux_cutoff PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_reload_auxiliaries_from_description PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_stop_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_2iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_slice PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_switch_frame PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformation_rewind PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_copy PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_add_another_transformations_raises_ValueError PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_pickle_reader PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_frame_collect_all_same PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[fac] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[fca] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[afc] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[acf] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[caf] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[cfa] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_values[slice0] SKIPPED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_values[slice1] SKIPPED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_values[slice2] SKIPPED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_shape[index 1] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_shape[index 2] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_shape[index 1 to 3] PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_empty_asel PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_empty_atomgroup PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_warns_deprecation PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_atomgroup PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_atomgroup_asel_mutex PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_different_box PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_trajectory_atomgroup PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_trajectory_universe PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_selection PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_none PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_no_container PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_not_changing_ts PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_n_atoms PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_n_frames PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_first_frame PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_double_close PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_writer_1 PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_writer_2 PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_dt PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_ts_dt_matches_reader PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_total_time PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_first_dimensions PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_changing_dimensions PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_volume PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_add_same_auxname_raises_ValueError PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_auxiliary PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter_auxiliary PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_aux_attribute PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter_as_aux_cutoff PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_reload_auxiliaries_from_description PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_stop_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_2iter PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_slice PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_switch_frame PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformation_rewind PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_copy PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_add_another_transformations_raises_ValueError PASSED [ 11%] 468s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_pickle_reader PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_frame_collect_all_same PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[fac] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[fca] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[afc] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[acf] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[caf] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[cfa] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_values[slice0] SKIPPED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_values[slice1] SKIPPED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_values[slice2] SKIPPED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 1] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 2] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_empty_asel PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_empty_atomgroup PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_warns_deprecation PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_atomgroup PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_atomgroup_asel_mutex PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_different_box PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_trajectory_atomgroup PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_trajectory_universe PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_selection PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_none PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_no_container PASSED [ 11%] 469s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_not_changing_ts PASSED [ 11%] 470s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_different_box PASSED [ 11%] 475s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_trajectory_atomgroup PASSED [ 11%] 480s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_trajectory_universe PASSED [ 11%] 484s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_selection PASSED [ 11%] 484s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_none PASSED [ 11%] 484s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_no_container PASSED [ 11%] 486s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_not_changing_ts PASSED [ 11%] 490s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_writer_large PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_writer_large_residue_count PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_growriter_resid_truncation PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_growriter_resid_true PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_growriter_resid_false PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_writer_resid_false PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_writer_resid_true PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_multiframe_gro PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_huge_box_gro PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[1] PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[2] PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[4] PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[5] PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[6] PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[7] PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[8] PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_gro_empty_box_write_read PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gsd.py::test_no_gsd_u_raises SKIPPED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gsd.py::test_gsd_reader_raises SKIPPED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_positions PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_n_frames PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_dimensions PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_data_step PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_n_atoms PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_n_frames PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_first_frame PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_double_close PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_dt PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_ts_dt_matches_reader PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_total_time PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_first_dimensions PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_changing_dimensions PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_volume PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_add_same_auxname_raises_ValueError PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_remove_auxiliary PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_auxiliary PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_aux_attribute PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_as_aux_cutoff PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_reload_auxiliaries_from_description PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_stop_iter PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_iter PASSED [ 11%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_2iter PASSED [ 12%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_slice PASSED [ 12%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_switch_frame PASSED [ 12%] 493s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformation_rewind PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_copy PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_add_another_transformations_raises_ValueError PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_reader PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_frame_collect_all_same PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[fac] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[fca] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[afc] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[acf] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[caf] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[cfa] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice0] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice1] SKIPPED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice2] SKIPPED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 1] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 2] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 1 to 3] PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_empty_asel PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_empty_atomgroup PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_warns_deprecation PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_atomgroup PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_atomgroup_asel_mutex PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_last_frame PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_go_over_last_frame PASSED [ 12%] 494s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_frame_jump PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_frame_jump_issue1942 PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_next_gives_second_frame PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_reopen PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_rename_aux PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_as_aux_highf PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_as_aux_lowf PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_rewinds[indexed] PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_rewinds[sliced] PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_rewinds[all] PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_next_ts_reader PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_last_ts_reader PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_1 PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_2 PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_copying PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_different_box PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_selection PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_none PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_no_container PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_not_changing_ts PASSED [ 12%] 495s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_trajectory_atomgroup PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_trajectory_universe PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_n_frames PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_positions PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_velocities PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_forces PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_dimensions PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_data_step PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_rewind PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_next PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_jump_last_frame PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[0-2-1] PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[1-2-1] PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[list] PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[array] PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_list_indices PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[position-positions] PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[velocity-velocities] PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[force-forces] PASSED [ 12%] 496s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/value] PASSED [ 12%] 497s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/time] PASSED [ 12%] 497s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[velocity/value] PASSED [ 12%] 497s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[force/value] PASSED [ 12%] 497s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_length_unit_from_box PASSED [ 12%] 497s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[position] PASSED [ 12%] 497s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[velocity] PASSED [ 12%] 498s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[force] PASSED [ 12%] 498s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_2D_box PASSED [ 12%] 498s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_box_vector PASSED [ 12%] 498s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_box PASSED [ 12%] 498s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_groups PASSED [ 12%] 498s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_convert_units PASSED [ 12%] 498s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_units_but_convert_units_true_error PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_filestream XFAIL [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_wrong_driver PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_with_driver PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[velocity-force] PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-force] PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-velocity] PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms_error PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0-ValueError-H5MDWriter: no atoms in output trajectory] PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0.5-OSError-H5MDWriter: Timestep does not have] PASSED [ 12%] 499s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_chunk_error PASSED [ 12%] 500s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[None] PASSED [ 12%] 500s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[0] PASSED [ 12%] 500s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_not_monotonic PASSED [ 12%] 500s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_from_frame PASSED [ 12%] 500s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_has_property PASSED [ 12%] 501s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-False] PASSED [ 12%] 501s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-False] PASSED [ 12%] 501s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-True] PASSED [ 12%] 502s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-True] PASSED [ 12%] 502s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-True-True] PASSED [ 12%] 502s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-True] PASSED [ 12%] 502s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-False] PASSED [ 12%] 503s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_AtomGroup_with PASSED [ 12%] 503s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[None-1] PASSED [ 12%] 503s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[all-3] PASSED [ 12%] 504s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[fs-Angstrom-Angstrom/ps-kJ/(mol*Angstrom)] PASSED [ 12%] 504s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[s-pm-m/s-Newton] PASSED [ 12%] 504s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[ps-fm-Angstrom/fs-kcal/(mol*Angstrom)] PASSED [ 12%] 505s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[AKMA-nm-Angstrom/AKMA-kcal/(mol*Angstrom)] PASSED [ 12%] 505s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[imaginary time-None-None-None] PASSED [ 12%] 505s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-c-None] PASSED [ 12%] 505s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-None-HUGE FORCE] PASSED [ 12%] 505s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-lightyear-None-None] PASSED [ 12%] 505s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_true PASSED [ 12%] 506s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_false PASSED [ 12%] 506s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[True] PASSED [ 12%] 506s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[False] PASSED [ 12%] 506s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks0] PASSED [ 12%] 507s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks1] PASSED [ 12%] 507s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks2] PASSED [ 12%] 508s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks_with_nframes PASSED [ 12%] 508s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous1 PASSED [ 12%] 508s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous2 PASSED [ 12%] 509s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-1] PASSED [ 12%] 509s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-9] PASSED [ 12%] 510s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[lzf-None] PASSED [ 12%] 510s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[core] PASSED [ 12%] 510s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[stdio] PASSED [ 12%] 510s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_parallel_disabled PASSED [ 12%] 510s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_timestep_not_modified_by_writer PASSED [ 12%] 510s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_reader_no_h5py PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_writer_no_h5py PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithObservables::test_read_h5md_issue4598 PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithObservables::test_read_h5md_malformed PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datareader_ValueError PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_n_atoms PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_coords PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_velos PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_dimensions PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_singleframe PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek_2 PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_iter PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_n_atoms PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_coords PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_velos PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_dimensions PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_singleframe PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek_2 PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_iter PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_vel_force PASSED [ 12%] 511s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_image_wrap PASSED [ 12%] 512s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_no_image PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-bonds] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-angles] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-dihedrals] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-impropers] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-bonds] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-angles] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-dihedrals] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-impropers] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-bonds] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-angles] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-dihedrals] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-impropers] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 13%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 13%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 13%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 13%] 514s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-bonds] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-angles] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-dihedrals] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-impropers] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 13%] 515s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 13%] 516s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag0] PASSED [ 13%] 516s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag1] PASSED [ 13%] 517s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag2] PASSED [ 13%] 517s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag3] PASSED [ 13%] 519s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag4] PASSED [ 13%] 519s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data] PASSED [ 13%] 519s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.bz2] PASSED [ 13%] 519s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.gz] PASSED [ 13%] 519s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[masses] PASSED [ 13%] 520s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[charges] PASSED [ 13%] 520s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[velocities] PASSED [ 13%] 521s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[positions] PASSED [ 13%] 521s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_bonds PASSED [ 13%] 521s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_angles PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_Reader_is_LAMMPS PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_atoms PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_frames PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_dimensions PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_dt PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_Timestep_time PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_LAMMPSDCDReader_set_dt PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_time_unit PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_unit PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer_is_LAMMPS PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer PASSED [ 13%] 522s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter_is_LAMMPS PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_Writer_is_LAMMPS PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_open PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_time_unit PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_unit PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_triclinicness PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_masses PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_types PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_non_numerical_types PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[ascii] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[bz2] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[gzip] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[ascii] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[bz2] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[gzip] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[ascii] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[bz2] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[gzip] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[ascii] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[bz2] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[gzip] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[ascii] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[bz2] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[gzip] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_true-fields0] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_single-fields1] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_multiple-fields2] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_wrong_format_additional_colums[u_additional_columns_wrong_format] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_warning[u_additional_columns_not_present] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unscaled] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unwrapped] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[scaled_unwrapped] PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_incorrect_convention_fails PASSED [ 13%] 523s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[auto-unscaled] PASSED [ 13%] 524s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unscaled-unscaled] PASSED [ 13%] 524s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled-scaled] PASSED [ 13%] 525s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unwrapped-unwrapped] PASSED [ 13%] 525s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled_unwrapped-scaled_unwrapped] PASSED [ 13%] 525s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_no_coordinate_info PASSED [ 13%] 528s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unscaled_reference PASSED [ 13%] 531s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_reference PASSED [ 13%] 534s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_reference PASSED [ 13%] 537s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_unscaled_match PASSED [ 13%] 541s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_unwrapped_match PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_auto_is_unscaled_match PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsTriclinic::test_box PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_atoms PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_frames PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_frame PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_double_close PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_dt PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_ts_dt_matches_reader PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_total_time PASSED [ 13%] 545s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_dimensions PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_changing_dimensions PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_volume PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_same_auxname_raises_ValueError PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_auxiliary PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_auxiliary PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_aux_attribute PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_cutoff PASSED [ 13%] 546s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reload_auxiliaries_from_description PASSED [ 13%] 547s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_stop_iter PASSED [ 13%] 547s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_iter PASSED [ 13%] 547s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_2iter PASSED [ 13%] 548s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_slice PASSED [ 13%] 548s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_switch_frame PASSED [ 13%] 548s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformation_rewind PASSED [ 13%] 549s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_copy PASSED [ 13%] 549s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_another_transformations_raises_ValueError PASSED [ 13%] 549s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_reader PASSED [ 13%] 549s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_collect_all_same XFAIL [ 13%] 549s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[fac] PASSED [ 13%] 549s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[fca] PASSED [ 13%] 549s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[afc] PASSED [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[acf] PASSED [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[caf] PASSED [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[cfa] PASSED [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice0] XFAIL [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice1] XFAIL [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice2] XFAIL [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 1] PASSED [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 2] PASSED [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 13%] 550s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_empty_asel PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_empty_atomgroup PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_last_frame PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_go_over_last_frame PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_jump PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_jump_issue1942 PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_next_gives_second_frame PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reopen PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_rename_aux PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_highf PASSED [ 13%] 551s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_lowf PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[indexed] PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[sliced] PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[all] PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_next_ts_reader PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_last_ts_reader PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_transefer_to_memory PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_array PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_default_memory_layout PASSED [ 13%] 552s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iteration PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_afc PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fac PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_cfa PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_acf PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fca PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_caf PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_skip1 PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_skip10 PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_subarray_view PASSED [ 13%] 553s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view_from_universe_atoms PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view_from_select_all PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_noview PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_repr PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_1 PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_2 PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_float32 PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_position_assignation PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_warns_deprecation PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_warns_deprecation PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_atomgroup PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_atomgroup_asel_mutex PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[2d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[2d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[3d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[3d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[2d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[2d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[3d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[3d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-2d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-2d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-3d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-3d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-2d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-2d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-3d-2d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-3d-3d] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[2d-velocities] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[2d-forces] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[3d-velocities] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[3d-forces] PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_single_box PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_varying_box PASSED [ 13%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_wrong_length PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_wrong_shape PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[positions] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[velocities] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[forces] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[dimensions] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[positions] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[velocities] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[forces] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[dimensions] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[velocities] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[forces] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[dimensions] PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_read_frame_size PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_read_positions PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_velocities PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_forces PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_len PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_read_frame_size PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_read_positions PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_velocities PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_forces PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_len PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::test_dimensionless PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::test_deprecation PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_read PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_read_statusbit PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write PASSED [ 14%] 554s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write_selection PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write_in_loop PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_broken_molecule PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_comments_header PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_no_bonds PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_jump_lastframe_traj PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_jump_traj PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_n_frames PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_next_traj PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_reverse_traj PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_rewind_traj PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_slice_traj PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_load PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_universe PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_write_nostructure PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_write_NIE PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_multi_write PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_universe_write PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_coordinates PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_distances PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_dt PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_frame PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_frame_index_0 PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_frame_index_1_raises_IndexError PASSED [ 14%] 555s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_full_slice PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_get_writer_from_reader PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_last_slice PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_load_file PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_n_atoms PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_n_frames PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_numres PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_parse_n_atoms PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_pickle_singleframe_reader PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_time PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_different_box PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_trajectory_atomgroup PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_trajectory_universe PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_selection PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_none PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_no_container PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_not_changing_ts PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_load_prm PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_n_atoms PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_n_frames PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_periodic PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_amber_proteinselection PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_sum_centres_of_geometry PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_initial_frame_is_0 PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_starts_with_first_frame PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_rewind PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_full_slice PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_random_access PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_slice_iteration PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_metadata PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_dt PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_get_writer PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_get_writer_custom_n_atoms PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_wrong_natoms PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_read_on_closed PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_mmap_kwarg PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_load_prm PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_n_atoms PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_n_frames PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_periodic PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_amber_proteinselection PASSED [ 14%] 556s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_sum_centres_of_geometry PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_initial_frame_is_0 PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_starts_with_first_frame PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_rewind PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_full_slice PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_random_access PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_slice_iteration PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_metadata PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_dt PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_get_writer PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_get_writer_custom_n_atoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_wrong_natoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_read_on_closed PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_mmap_kwarg PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_load_prm PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_n_atoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_n_frames PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_periodic PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_amber_proteinselection PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_sum_centres_of_geometry PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_initial_frame_is_0 PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_starts_with_first_frame PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_rewind PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_full_slice PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_random_access PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_slice_iteration PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_metadata PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_dt PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_get_writer PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_get_writer_custom_n_atoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_wrong_natoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_read_on_closed PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_mmap_kwarg PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_load_prm PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_n_atoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_n_frames PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_periodic PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_amber_proteinselection PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_sum_centres_of_geometry PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_initial_frame_is_0 PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_starts_with_first_frame PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_rewind PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_full_slice PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_random_access PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_slice_iteration PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_metadata PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_dt PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_get_writer PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_get_writer_custom_n_atoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_wrong_natoms PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_read_on_closed PASSED [ 14%] 557s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_mmap_kwarg PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_load_prm PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_n_atoms PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_n_frames PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_periodic PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_amber_proteinselection PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_sum_centres_of_geometry PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_initial_frame_is_0 PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_starts_with_first_frame PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_rewind PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_full_slice PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_random_access PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_slice_iteration PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_metadata PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_dt PASSED [ 14%] 558s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_get_writer PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_get_writer_custom_n_atoms PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_wrong_natoms PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_read_on_closed PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_mmap_kwarg PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_positions_1 PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_positions_2 PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_forces_1 PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_forces_2 PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_time_1 PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_time_2 PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_dt PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_box PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_positions[0-0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_positions[8-1] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_forces[0-0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_forces[8-1] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_velocities[0-0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_velocities[8-1] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_time[0-1.0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_time[8-9.0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_nframes PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_dt PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_box[0-0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_box[8-1] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_chain_times PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_dt PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_warn_user_no_time_information PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_coordinates PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_velocities PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_forces PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_box[mutation0-expected0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_box[mutation1-expected1] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_not_float PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation0] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation1] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation2] PASSED [ 14%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation0] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation1] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation2] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation3] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation4] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation0] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation1] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation2] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation3] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation4] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation5] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation6] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_verify_units_errors[yard-foot] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_verify_units_errors[second-minute] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_ioerror PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_conventionversion_warn PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_program_warn[mutation0] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_program_warn[mutation1] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_no_dt_warning PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netCDF4 PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netcdf PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_OtherWriter[nc] PASSED [ 15%] 559s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_OtherWriter[ncdf] PASSED [ 15%] 560s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_TRR2NCDF PASSED [ 15%] 560s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_AtomGroup PASSED [ 15%] 560s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netCDF4 PASSED [ 15%] 560s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netcdf PASSED [ 15%] 560s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_OtherWriter[nc] PASSED [ 15%] 560s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_OtherWriter[ncdf] PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_TRR2NCDF PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_AtomGroup PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-False-False] PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-True-False] PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-False-True] PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-True-True] PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_factors_default PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_bad_scale_factor PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[-2.0--2.0--2.0--2.0--2.0--2.0] PASSED [ 15%] 561s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[1.0-1.0-1.0-1.0-1.0-1.0] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[2.0-4.0-8.0-16.0-32.0-64.0] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_factors_default PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_bad_scale_factor PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[-2.0--2.0--2.0--2.0--2.0--2.0] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[1.0-1.0-1.0-1.0-1.0-1.0] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[2.0-4.0-8.0-16.0-32.0-64.0] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_ncdf4_not_present PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[coordinates-angstrom] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[time-picosecond] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_lengths-angstrom] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_angles-degree] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[velocities-angstrom/picosecond] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[forces-kilocalorie/mole/angstrom] PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_zero_atoms_VE PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_wrong_n_atoms PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_null.py::test_NullWriter PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_ENT PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_coordinates PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_dimensions PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_distances PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_dt PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame_index_0 PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 562s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_full_slice PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_last_slice PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_load_file PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_n_atoms PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_n_frames PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_numres PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_pickle_singleframe_reader PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_time PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_uses_PDBReader PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_HEADER PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_TITLE PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_COMPND PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_REMARK PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_coordinates PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_distances PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_dt PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame_index_0 PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_full_slice PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_last_slice PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_load_file PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_long_resSeq PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_n_atoms PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_n_frames PASSED [ 15%] 563s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_numres PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_pickle_singleframe_reader PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_time PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resnames PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resids PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_atom_names PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_altlocs PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_icodes PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_segids PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_occupancies PASSED [ 15%] 564s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_tempfactors PASSED [ 15%] 566s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_single_frame_Writer PASSED [ 15%] 566s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_single_frame_AtomGroup PASSED [ 15%] 566s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_nodims[universe_and_expected_dims0] PASSED [ 15%] 566s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_nodims[universe_and_expected_dims1] PASSED [ 15%] 567s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_coordinate_limits_min PASSED [ 15%] 567s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_coordinate_limits_max PASSED [ 15%] 567s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_HEADER_TITLE_multiframe PASSED [ 15%] 568s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_MODEL_multiframe[0-12] PASSED [ 15%] 568s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_MODEL_multiframe[9997-12] PASSED [ 15%] 569s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[@] PASSED [ 15%] 571s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[] PASSED [ 15%] 573s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[AA] PASSED [ 15%] 573s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_stringio_outofrange PASSED [ 15%] 573s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_hetatm_written PASSED [ 15%] 573s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_default_atom_record_type_written PASSED [ 15%] 574s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_abnormal_record_type PASSED [ 15%] 574s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex PASSED [ 15%] 575s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex_bonds PASSED [ 15%] 575s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_reindex PASSED [ 15%] 575s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex_missing_ids PASSED [ 15%] 576s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_n_frames PASSED [ 15%] 576s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_n_atoms_frame PASSED [ 15%] 576s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_rewind PASSED [ 15%] 576s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_iteration PASSED [ 15%] 576s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_slice_iteration PASSED [ 15%] 580s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_conect_bonds_conect PASSED [ 15%] 580s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_conect_error PASSED [ 15%] 580s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_numconnections PASSED [ 15%] 584s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_conect_bonds_all PASSED [ 15%] 584s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_bonds_partial PASSED [ 15%] 584s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_bonds_with_100000_ag_index PASSED [ 15%] 584s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_atomselection PASSED [ 15%] 585s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_all_timesteps PASSED [ 15%] 585s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_loop PASSED [ 15%] 585s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_atoms PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_load_pdb PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_selection PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_atoms PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_frames PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_time PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_frame PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_dt PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_coordinates PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_distances PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_unitcell PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_volume PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_residues PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_first_residue PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_ts_data_keys PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_varying_attrs[occupancy-occupancies-vals0] PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_varying_attrs[tempfactor-tempfactors-vals1] PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_natoms PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_coords PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_dims PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_names PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_residues PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_resnames PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_reading_trajectory PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_load PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_serials PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_coordinates PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_distances PASSED [ 15%] 586s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_dt PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame_index_0 PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_full_slice PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_last_slice PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_load_file PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_n_atoms PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_n_frames PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_numres PASSED [ 15%] 587s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_pickle_singleframe_reader PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_time PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_ENT PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_coordinates PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_dimensions PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_distances PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_dt PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_0 PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_full_slice PASSED [ 15%] 588s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_last_slice PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_load_file PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_n_atoms PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_n_frames PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_numres PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_pickle_singleframe_reader PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_time PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_uses_PDBReader PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_occupancies PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestWriterAlignments::test_atomname_alignment PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestWriterAlignments::test_atomtype_alignment PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom0- CA ] PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom1- OE1] PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom2-SE ] PASSED [ 15%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom3-CA ] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom4-FE ] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom5- P ] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_standalone_pdb PASSED [ 16%] 589s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_pdb_zero_atoms PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_atom_not_match PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_partially_missing_cryst PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_no_atoms_elements PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_atom_elements PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_elements_roundtrip PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_cryst_meaningless_warning PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_cryst_meaningless_select PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_roundtrip PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_not_int PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_limit[99] PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_limit[-100] PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_segid PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_chainID PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_protein PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_backbone PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_neighborhood PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_n_frames PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_time PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_frame PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt] PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.bz2] PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.gz] PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_formatting PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_charges PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_chainids_with_segids PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_get_writer PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_ArgCACharges PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_ProNCharges PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_coordinates PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_dimensions PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_distances PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_dt PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame PASSED [ 16%] 590s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame_index_0 PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame_index_1_raises_IndexError PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_full_slice PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_hydrogenCharges PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_last_slice PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_load_file PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_n_atoms PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_n_frames PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_numres PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_pickle_singleframe_reader PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_time PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_total_charge PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr] PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr.bz2] PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr.gz] PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_writer_noChainID PASSED [ 16%] 591s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_write_withChainID PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_timestep_not_modified_by_writer PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_total_charge PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_names_writing PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_resnames_writing PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_radii_writing PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_charges_writing PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_required_attributes PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_iter PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_close PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_rewind PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_context PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_len PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_raises_StopIteration PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_unknown_order_key[turnip] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_unknown_order_key[abc] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[faac] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[affc] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[afcc] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None-None] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-5-None] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[2-None-None] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[2-5-None] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None-2] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None--1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None--1--1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[10-0--1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-10-1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-10-2] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-20-None] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-20-2] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-5-2] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[5-None--1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-5--1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-10-1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-10-None-1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-None--1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-5--20] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[5-1-1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[1-5--1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-100-None-None] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-None-None] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-2-10--2] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-0-1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[10-1-2] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice_VE_1 PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice_TE_1 PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl0-list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl0-array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl1-list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl1-array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl2-list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl2-array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl3-list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl3-array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl4-list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl4-array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl5-list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl5-array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl6-list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl6-array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl0] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl1] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl2] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl3] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl4] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl5] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl6] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl7] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl8] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl9] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len_empty[list] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len_empty[array] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl10] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl11] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl12] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl13] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl14] PASSED [ 16%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl15] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl15] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl15] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl15] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl15] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl15] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_list_TE PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_array_TE PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl10] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl11] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl12] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl13] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl14] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_required_attributes PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_iter PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_close PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_context PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_len PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_raises_StopIteration PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_unknown_order_key[turnip] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_unknown_order_key[abc] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[faac] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[affc] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[afcc] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_next PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_2 PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_IE PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_IE_2 PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_slice_1 PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_slice_2 PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_reopen PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_rewind PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_read_frame PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_iter_rewind PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_neg PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_neg_IE PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_pos_IE PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_slice PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_slice2 PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_ndarray PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_TE PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_len PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_iter PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_repr PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_repr_with_box PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_repr_no_box PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_default_dtype_npf32 PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions_set_box[int] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions_set_box[float32] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions_set_box[float64] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_volume PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_triclinic_vectors PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_set_triclinic_vectors PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_set_dimensions_None PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_set_triclinic_dimensions_None PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_coordinate_getter_shortcuts PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_coordinate_setter_shortcuts PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_n_atoms PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_n_atoms_readonly PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_n_atoms_presence PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_unitcell_presence PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_data_presence PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_allocate_velocities PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_allocate_forces PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_velocities_remove PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_forces_remove PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_ts PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-True-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-True-False] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-False-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-False-False] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[False-True-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[False-True-False] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[False-False-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates_mismatch PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates_nodata PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_supply_dt PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_redefine_dt PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_delete_dt PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_supply_time_offset PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_delete_time PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time_with_offset PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dt PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_change_dt PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dt_with_offset PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time_overrides_dt_with_offset PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_copy] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_independent] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_copy_slice_indices] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_copy_slice_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_npint_slice] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts0] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts1] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts2] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts3] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts4] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts5] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts6] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts0] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts1] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts2] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts3] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts4] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts5] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts6] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-True-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-True-False] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-False-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-False-False] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[False-True-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[False-True-False] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[False-False-True] PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_class_equality PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_frame_equality PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_n_atoms_equality PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_pos_equality PASSED [ 17%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_no_pos_inequality PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_vels_equality PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_mismatched_vels_equality PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_wrong_vels_equality PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_forces_equality PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_mismatched_forces_equality PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_wrong_forces_equality PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dims_mismatch_inequality[None] PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dims_mismatch_inequality[dim11] PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe0] PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe1] PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe2] PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe3] PASSED [ 18%] 592s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe4] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe5] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe6] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe7] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe8] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe9] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe10] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe11] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe12] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe13] PASSED [ 18%] 593s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe14] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe15] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe16] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe17] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe18] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe0] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe1] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe2] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe3] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe4] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe5] PASSED [ 18%] 594s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe6] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe7] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe8] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe9] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe10] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe11] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe12] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe13] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe14] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe15] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe16] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe17] PASSED [ 18%] 595s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe18] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni0] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni1] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni2] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni3] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni4] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni5] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni6] PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_pytng_not_present_raises PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_parse_n_atoms_no_pytng PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_n_atoms SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_n_frames SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_first_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_double_close SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_dt SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_ts_dt_matches_reader SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_total_time SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_first_dimensions SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_changing_dimensions SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_volume SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_add_same_auxname_raises_ValueError SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_remove_auxiliary SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_remove_nonexistant_auxiliary_raises_ValueError SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_auxiliary SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_aux_attribute SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_as_aux_cutoff SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_reload_auxiliaries_from_description SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_stop_iter SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_iter SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_2iter SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_slice SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_switch_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformation_rewind SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_copy SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_add_another_transformations_raises_ValueError SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_reader SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_frame_collect_all_same SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[fac] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[fca] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[afc] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[acf] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[caf] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[cfa] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_values[slice0] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_values[slice1] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_values[slice2] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_shape[index 1] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_shape[index 2] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_shape[index 1 to 3] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_empty_asel SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_empty_atomgroup SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_warns_deprecation SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_atomgroup SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_atomgroup_asel_mutex SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_last_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_go_over_last_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_frame_jump SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_frame_jump_issue1942 SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_next_gives_second_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_reopen SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_rename_aux SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_as_aux_highf SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_as_aux_lowf SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_rewinds[indexed] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_rewinds[sliced] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_rewinds[all] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_next_ts_reader SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_last_ts_reader SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_writer_1 SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_writer_2 SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_tng_traj_uneven_blocks SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_n_atoms SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_n_frames SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_block_names SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_special_blocks SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_additional_blocks SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_initial_frame_is_0 SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_starts_with_first_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_rewind SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_full_slice SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_random_access SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_frame_overrun SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_positions_first_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_box_first_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_positions_last_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_box_last_frame SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[0] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[20] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[50] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[100] SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_lambda_in_ts SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_read_box_fail_strange_step SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_read_pos_fail_strange_step SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_additional_block_read_fails SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_parse_n_atoms SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_n_atoms SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_n_frames SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_block_names SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_special_blocks SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_read_vels_fail_strange_step SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_read_force_fail_strange_step SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_writer_raises_notimpl SKIPPED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_initial_frame_is_0 PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_positions PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_dimensions PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_n_frames PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_n_atoms PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_frame PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_time PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_dt PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_data_step PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_periodic PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_rewind PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_random_access PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_read_frame_reopens PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_trc_n_atoms PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_periodic PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_trc_dimensions PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_open_twice PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBoxNoConvert::test_trc_dimensions PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_n_atoms PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_periodic PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_dimensions PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_distances PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTruncOctBox::test_universe PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxOrigin::test_universe PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxEuler::test_universe PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCEmptyFile::test_universe PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_n_atoms PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_periodic PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_dimensions PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_n_frames PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_frame PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_time PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_load_prm PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_n_atoms PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_n_frames PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_periodic PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_amber_proteinselection PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_sum_centres_of_geometry PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_initial_frame_is_0 PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_starts_with_first_frame PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_rewind PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_full_slice PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_random_access PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_read_frame_reopens PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_load_prm PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_n_atoms PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_n_frames PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_periodic PASSED [ 18%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_amber_proteinselection PASSED [ 19%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_sum_centres_of_geometry PASSED [ 19%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_initial_frame_is_0 PASSED [ 19%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_starts_with_first_frame PASSED [ 19%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_rewind PASSED [ 19%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_full_slice PASSED [ 19%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_random_access PASSED [ 19%] 596s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_read_frame_reopens PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_load_prm PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_n_atoms PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_n_frames PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_periodic PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_amber_proteinselection PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_sum_centres_of_geometry PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_initial_frame_is_0 PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_starts_with_first_frame PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_rewind PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_full_slice PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_random_access PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trj.py::test_trj_no_natoms PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_reader PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_writer PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_load_trz PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_next_trz PASSED [ 19%] 597s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_rewind_trz PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_n_frames PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_seeking PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_volume PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_unitcell PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_coordinates PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_velocities PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_delta PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_time PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_title PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_writer PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_writer_2 PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_wrong_n_atoms PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_read_zero_box PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_write_trajectory PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_long_title PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_no_box_warning PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_writer_trz_from_other PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_no_dt_warning PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestWrite_Partial_Timestep::test_write_trajectory PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_txyz_positions PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_positions PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_positions_frame_2 PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_traj_length PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arcpbc_traj_length PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_pbc_boxsize PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_load_prm PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_n_atoms PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_n_frames PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_periodic PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_amber_proteinselection PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_sum_centres_of_geometry PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_initial_frame_is_0 PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_starts_with_first_frame PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_rewind PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_full_slice PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_random_access PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_read_frame_reopens PASSED [ 19%] 598s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_len PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_getting PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_slicing PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_slicing_2 PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_position PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_velocity PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_force PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_unitcell PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[ascii] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[bz2] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[gzip] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[ascii] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[bz2] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[gzip] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[ascii] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[bz2] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[gzip] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[ascii] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[bz2] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[gzip] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[ascii] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[bz2] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[gzip] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_true-fields0] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_single-fields1] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_multiple-fields2] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_wrong_format_additional_colums[u_additional_columns_wrong_format] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_warning[u_additional_columns_not_present] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_n_atoms PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_length PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_seeking PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_boxsize PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_atom_reordering PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_additional_columns[u_additional_columns_true-fields0] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_additional_columns[u_additional_columns_single-fields1] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_additional_columns[u_additional_columns_multiple-fields2] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_wrong_format_additional_colums[u_additional_columns_wrong_format] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_warning[u_additional_columns_not_present] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_n_frames PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_rewind PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_iteration PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_slice_iteration PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_len PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_getting PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_slicing PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_slicing_2 PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_position PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_velocity PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_force PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_unitcell PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_load_prm PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_n_atoms PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_n_frames PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_periodic PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_amber_proteinselection PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_sum_centres_of_geometry PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_initial_frame_is_0 PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_starts_with_first_frame PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_rewind PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_full_slice PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_random_access PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_read_frame_reopens PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_n_frames PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_positions PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_positions_2 PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[CRDWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[ChemfilesWriter] SKIPPED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DATAWriter] SKIPPED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DCDWriter0] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DCDWriter1] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[FHIAIMSWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[GROWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[H5MDWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[MOL2Writer] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[MultiPDBWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NAMDBINWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NCDFWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NullWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PDBQTWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PDBWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PQRWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[TRRWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[TRZWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[XTCWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[XYZWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[CRDWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[ChemfilesWriter] SKIPPED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DATAWriter] SKIPPED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DCDWriter0] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DCDWriter1] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[FHIAIMSWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[GROWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[H5MDWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MOL2Writer] SKIPPED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MultiPDBWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NAMDBINWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NCDFWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NullWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBQTWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PQRWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRRWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRZWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[XTCWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[XYZWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[CRDWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[ChemfilesWriter] SKIPPED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DATAWriter] SKIPPED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DCDWriter0] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DCDWriter1] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[FHIAIMSWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[GROWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[H5MDWriter] PASSED [ 19%] 599s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MOL2Writer] SKIPPED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MultiPDBWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NAMDBINWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NCDFWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NullWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBQTWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PQRWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRRWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRZWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[XTCWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[XYZWriter] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_default_multiframe PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_singleframe PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_multiframe_magic2 PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_singleframe_magic2 PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[foo.xtc-kwargs0-.foo.xtc_offsets.npz] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[foo.xtc-kwargs1-.foo.xtc_offsets.npz] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[bar.0001.trr-kwargs2-.bar.0001.trr_offsets.npzzzz] PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_Sub::test_load_new_raises_ValueError PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_Sub::test_sub_coordinates PASSED [ 19%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_Sub::test_load_new_raises_ValueError PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_Sub::test_sub_coordinates PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_rewind_xdrtrj PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_next_xdrtrj PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_jump_xdrtrj PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_jump_lastframe_xdrtrj PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_slice_xdrtrj PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_reverse_xdrtrj PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_coordinates PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_unitcell PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_volume PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_dt PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_totaltime PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_frame PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_time PASSED [ 20%] 600s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_get_Writer PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_Writer PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_EOFraisesStopIteration PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_read_next_timestep_ts_no_positions PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReaderClass::test_with_statement PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_rewind_xdrtrj PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_next_xdrtrj PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_jump_xdrtrj PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_jump_lastframe_xdrtrj PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_slice_xdrtrj PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_reverse_xdrtrj PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_coordinates PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_unitcell PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_volume PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_dt PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_totaltime PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_frame PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_time PASSED [ 20%] 601s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_get_Writer PASSED [ 20%] 602s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_Writer PASSED [ 20%] 602s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_EOFraisesStopIteration PASSED [ 20%] 602s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_read_next_timestep_ts_no_positions PASSED [ 20%] 602s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_velocities PASSED [ 20%] 603s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCNoConversion::test_coordinates PASSED [ 20%] 603s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRNoConversion::test_coordinates PASSED [ 20%] 604s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter::test_write_trajectory PASSED [ 20%] 604s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter::test_timestep_not_modified_by_writer PASSED [ 20%] 604s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_write_trajectory PASSED [ 20%] 604s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_timestep_not_modified_by_writer PASSED [ 20%] 605s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_velocities PASSED [ 20%] 605s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_gaps PASSED [ 20%] 606s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_data_preservation PASSED [ 20%] 607s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_GRO PASSED [ 20%] 607s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_PDB PASSED [ 20%] 608s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_CRD PASSED [ 20%] 608s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_GRO PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_PDB PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_CRD PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterIssue117::test_write_trajectory PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterIssue117::test_write_trajectory PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_triclinic_box PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_n_atoms PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_n_frames PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_first_frame PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_double_close PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_writer_1 PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_writer_2 PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_dt PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_ts_dt_matches_reader PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_total_time PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_first_dimensions PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_changing_dimensions PASSED [ 20%] 609s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_volume PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_add_same_auxname_raises_ValueError PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_remove_auxiliary PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_auxiliary PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_aux_attribute PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_as_aux_cutoff PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_reload_auxiliaries_from_description PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_stop_iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_2iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_slice PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_switch_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformation_rewind PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_copy PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_add_another_transformations_raises_ValueError PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_reader PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_frame_collect_all_same PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[fac] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[fca] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[afc] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[acf] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[caf] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[cfa] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_values[slice0] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_values[slice1] SKIPPED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_values[slice2] SKIPPED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_shape[index 1] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_shape[index 2] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_shape[index 1 to 3] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_empty_asel PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_empty_atomgroup PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_warns_deprecation PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_atomgroup PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_atomgroup_asel_mutex PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_last_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_go_over_last_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_frame_jump PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_frame_jump_issue1942 PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_next_gives_second_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_reopen PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_rename_aux PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_as_aux_highf PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_as_aux_lowf PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_rewinds[indexed] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_rewinds[sliced] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_rewinds[all] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_next_ts_reader PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_last_ts_reader PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_different_box PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_trajectory_atomgroup PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_trajectory_universe PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_selection PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_none PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_no_container PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_not_changing_ts PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_different_precision PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_n_atoms PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_n_frames PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_first_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_double_close PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_writer_1 PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_writer_2 PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_dt PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_ts_dt_matches_reader PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_total_time PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_first_dimensions PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_changing_dimensions PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_volume PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_add_same_auxname_raises_ValueError PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_remove_auxiliary PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_auxiliary PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_aux_attribute PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_as_aux_cutoff PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_reload_auxiliaries_from_description PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_stop_iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_2iter PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_slice PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_switch_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformation_rewind PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_copy PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_add_another_transformations_raises_ValueError PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_reader PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_frame_collect_all_same PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[fac] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[fca] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[afc] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[acf] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[caf] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[cfa] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_values[slice0] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_values[slice1] SKIPPED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_values[slice2] SKIPPED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_shape[index 1] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_shape[index 2] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_shape[index 1 to 3] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_empty_asel PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_empty_atomgroup PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_warns_deprecation PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_atomgroup PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_atomgroup_asel_mutex PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_last_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_go_over_last_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_frame_jump PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_frame_jump_issue1942 PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_next_gives_second_frame PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_reopen PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_rename_aux PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_as_aux_highf PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_as_aux_lowf PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_rewinds[indexed] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_rewinds[sliced] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_rewinds[all] PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_next_ts_reader PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_last_ts_reader PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_different_box PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_trajectory_atomgroup PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_trajectory_universe PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_selection PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_none PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_no_container PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_not_changing_ts PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_lambda PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_offsets PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_nonexistent_offsets_file PASSED [ 20%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_corrupted_offsets_file PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_io_fails PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_value_fails PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_size_mismatch PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_ctime_mismatch PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_natoms_mismatch PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_last_frame_wrong PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_unsupported_format PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_readonly PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_offset_lock_created PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_offsets PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_nonexistent_offsets_file PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_corrupted_offsets_file PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_io_fails PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_value_fails PASSED [ 21%] 610s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_size_mismatch PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_ctime_mismatch PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_natoms_mismatch PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_last_frame_wrong PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_unsupported_format PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_readonly PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_offset_lock_created PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_pathlib PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_n_atoms PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_n_frames PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_first_frame PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_double_close PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_writer_1 PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_writer_2 PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_dt PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_ts_dt_matches_reader PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_total_time PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_first_dimensions PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_changing_dimensions PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_volume PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_add_same_auxname_raises_ValueError PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_remove_auxiliary PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_auxiliary PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_aux_attribute PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_as_aux_cutoff PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_reload_auxiliaries_from_description PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_stop_iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_2iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_slice PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_switch_frame PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformation_rewind PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_copy PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_add_another_transformations_raises_ValueError PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_reader PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_frame_collect_all_same PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[fac] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[fca] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[afc] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[acf] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[caf] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[cfa] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_values[slice0] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_values[slice1] SKIPPED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_values[slice2] SKIPPED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_shape[index 1] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_shape[index 2] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_empty_asel PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_empty_atomgroup PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_warns_deprecation PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_atomgroup PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_atomgroup_asel_mutex PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_last_frame PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_go_over_last_frame PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_frame_jump PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_frame_jump_issue1942 PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_next_gives_second_frame PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_reopen PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_rename_aux PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_as_aux_highf PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_as_aux_lowf PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_rewinds[indexed] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_rewinds[sliced] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_rewinds[all] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_next_ts_reader PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_last_ts_reader PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_double_open PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_different_box PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_trajectory_atomgroup PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_trajectory_universe PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_none PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_no_container PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_not_changing_ts PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_selection PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_different_models_in_trajectory PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_no_conversion PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[Curstom Remark-Curstom Remark] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[-] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[None-frame 0 | Written by MDAnalysis XYZWriter (release 2.8.0)] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_n_atoms PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_n_frames PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_first_frame PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_double_close PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_writer_1 PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_writer_2 PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_dt PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_ts_dt_matches_reader PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_total_time PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_first_dimensions PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_changing_dimensions PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_volume PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_add_same_auxname_raises_ValueError PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_remove_auxiliary PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_auxiliary PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_aux_attribute PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_as_aux_cutoff PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_reload_auxiliaries_from_description PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_stop_iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_2iter PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_slice PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_switch_frame PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformation_rewind PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_copy PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_add_another_transformations_raises_ValueError PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_reader PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_collect_all_same PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[fac] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[fca] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[afc] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[acf] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[caf] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[cfa] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice0] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice1] SKIPPED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice2] SKIPPED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 1] PASSED [ 21%] 611s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 2] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_empty_asel PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_empty_atomgroup PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_warns_deprecation PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_atomgroup PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_atomgroup_asel_mutex PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_last_frame PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_go_over_last_frame PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_jump PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_jump_issue1942 PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_next_gives_second_frame PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_reopen PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_rename_aux PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_as_aux_highf PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_as_aux_lowf PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_rewinds[indexed] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_rewinds[sliced] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_rewinds[all] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_next_ts_reader PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_last_ts_reader PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_double_open PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_different_box PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_trajectory_atomgroup PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_trajectory_universe PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_none PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_no_container PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_not_changing_ts PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_selection PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_different_models_in_trajectory PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_no_conversion PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[Curstom Remark-Curstom Remark] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[-] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[None-frame 0 | Written by MDAnalysis XYZWriter (release 2.8.0)] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_no_names PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_or_names[elements] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_or_names[names] PASSED [ 21%] 612s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_and_names PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_case_insensitive SKIPPED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_lib_as_method SKIPPED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_kwargs SKIPPED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_lib_method_kwargs SKIPPED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accessors.py::TestAccessor::test_access_from_class PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accessors.py::TestConverterWrapper::test_raises_valueerror PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accessors.py::TestConverterWrapper::test_single_instance SKIPPED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[atoms] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[residues] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[segments] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[atoms] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[residues] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[segments] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-resindices-residues] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-segindices-segments] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-molnums-molecules] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-fragindices-fragments] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-resindices-residues] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-segindices-segments] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-molnums-molecules] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-fragindices-fragments] PASSED [ 21%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-resindices-residues] PASSED [ 22%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-segindices-segments] PASSED [ 22%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-molnums-molecules] PASSED [ 22%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-fragindices-fragments] PASSED [ 22%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[atoms] PASSED [ 22%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[residues] PASSED [ 22%] 612s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[segments] PASSED [ 22%] 613s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[atoms] PASSED [ 22%] 613s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[residues] PASSED [ 22%] 613s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[segments] PASSED [ 22%] 613s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[atoms] PASSED [ 22%] 614s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[residues] PASSED [ 22%] 614s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[segments] PASSED [ 22%] 614s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[atoms] PASSED [ 22%] 615s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[residues] PASSED [ 22%] 615s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[segments] PASSED [ 22%] 615s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[atoms] PASSED [ 22%] 615s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[residues] PASSED [ 22%] 615s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[atoms] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[residues] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-resindices-residues] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-segindices-segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-molnums-molecules] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-fragindices-fragments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-resindices-residues] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-segindices-segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-molnums-molecules] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-fragindices-fragments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-resindices-residues] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-segindices-segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-molnums-molecules] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-fragindices-fragments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[atoms] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[residues] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-resids-residues] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-segids-segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-fragindices-fragments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-resids-residues] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-segids-segments] PASSED [ 22%] 616s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-fragindices-fragments] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-resids-residues] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-segids-segments] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-fragindices-fragments] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[atoms] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[residues] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[segments] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[atoms] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[residues] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[segments] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-resids-residues] PASSED [ 22%] 617s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-segids-segments] PASSED [ 22%] 618s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-fragindices-fragments] PASSED [ 22%] 618s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-resids-residues] PASSED [ 22%] 618s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-segids-segments] PASSED [ 22%] 618s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-fragindices-fragments] PASSED [ 22%] 618s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-resids-residues] PASSED [ 22%] 618s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-segids-segments] PASSED [ 22%] 618s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-fragindices-fragments] PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[atoms] PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[residues] PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[segments] PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_com PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_no_center PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_residues_com_coc PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_segment PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_fragments PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_com PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_coc PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_no_center PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_residues PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_segment PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_fragments PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_attributes_names PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_name PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_type PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_mass PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attributes_charge PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_attributes_positions PASSED [ 22%] 619s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_selection PASSED [ 22%] 620s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_hierarchy PASSED [ 22%] 620s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_bad_add PASSED [ 22%] 620s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_add_AG PASSED [ 22%] 620s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_no_velo PASSED [ 22%] 620s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_bonded_atoms PASSED [ 22%] 620s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_undefined_occupancy PASSED [ 22%] 620s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_pickle[1] PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_pickle[-1] PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_improper_initialisation PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_velocity_fail PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_force_fail PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_velocity_set_fail PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_force_set_fail PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_bond PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_angle PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_dihedral PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_improper PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[bond] PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[angle] PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[dihedral] PASSED [ 22%] 621s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[improper] PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_no_args PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_raises_unknown_format PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_coordinates PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames0] PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames1] PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames2] PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames0] PASSED [ 22%] 622s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames1] PASSED [ 22%] 623s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames2] PASSED [ 22%] 623s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xtc] PASSED [ 22%] 623s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-dcd] PASSED [ 22%] 623s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-pdb] PASSED [ 22%] 623s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] PASSED [ 22%] 624s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-PDB] PASSED [ 22%] 624s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xtc] PASSED [ 22%] 624s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-dcd] PASSED [ 22%] 625s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-pdb] PASSED [ 22%] 625s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] PASSED [ 22%] 626s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-PDB] PASSED [ 22%] 626s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xtc] PASSED [ 22%] 626s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-dcd] PASSED [ 22%] 626s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-pdb] PASSED [ 22%] 627s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] PASSED [ 22%] 627s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-PDB] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[.gz] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[.bz2] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[invalid] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[8] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[True] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[False] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[3.2] PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_incompatible_arguments PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_incompatible_trajectories PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_no_traj_move PASSED [ 22%] 628s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_selection PASSED [ 22%] 629s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_bogus_kwarg_pdb PASSED [ 22%] 629s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[] PASSED [ 22%] 630s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.gz] PASSED [ 22%] 630s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.bz2] PASSED [ 22%] 631s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_empty_atomgroup PASSED [ 22%] 631s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[name CA] PASSED [ 22%] 631s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE and resname LEU] PASSED [ 22%] 631s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE] PASSED [ 22%] 631s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Residue PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Universe PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[] PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[.gz] PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[.bz2] PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_empty_atomgroup PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[name CA] PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[segid 4AKE and resname LEU] PASSED [ 22%] 633s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[segid 4AKE] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_Residue PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_Universe PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_translate PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_rotate PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_rotateby PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_rotation_only PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_translation_only PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_translation_and_rotation PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_1 PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_2 PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_duplicates PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_wrong_length PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_wrong_shape PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-atoms] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-residues] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-segments] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-atoms] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-residues] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-segments] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-atoms] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-residues] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-segments] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-atoms] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-residues] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-segments] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-atoms] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-residues] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-segments] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-atoms] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-residues] PASSED [ 22%] 634s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-segments] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-atoms] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-residues] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-segments] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-atoms] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-residues] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-segments] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-atoms] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-residues] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-segments] PASSED [ 22%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-atoms] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-residues] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-segments] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap_wrap_true_group PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_atoms PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_residues PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_segments PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_VE PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[name-names-string] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[type-types-string] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[altLoc-altLocs-string] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[charge-charges-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[mass-masses-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[radius-radii-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[bfactor-bfactors-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[occupancy-occupancies-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[name-names-string] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[type-types-string] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[altLoc-altLocs-string] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[charge-charges-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[mass-masses-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[radius-radii-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[bfactor-bfactors-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[occupancy-occupancies-float] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_unique_restore_mask PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestOrphans::test_atom PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestOrphans::test_atomgroup PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[0-0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[0-1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[1-0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[1-1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_adding_empty_ags PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs0-names0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs1-names1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs2-names2] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_single PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_empty PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs0-names0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs1-names1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs2-names2] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs0-names0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs1-names1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs2-names2] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_single PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_empty PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs0-names0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs1-names1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs2-names2] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs0-names0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs1-names1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs2-names2] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_empty PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_single PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs0-names0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs1-names1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs2-names2] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs0-names0] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs1-names1] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs2-names2] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs3-names3] PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_single PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_empty PASSED [ 23%] 635s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[CYS] PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[ILE] PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[SER] PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[THR] PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[VAL] PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[CYSH] PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[ILE] PASSED [ 23%] 636s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[SER] PASSED [ 23%] 637s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[THR] PASSED [ 23%] 637s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[VAL] PASSED [ 23%] 637s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[CYS] PASSED [ 23%] 637s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[ILE] PASSED [ 23%] 637s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[SER] PASSED [ 23%] 637s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[THR] PASSED [ 23%] 637s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[VAL] PASSED [ 23%] 638s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ARG] PASSED [ 23%] 638s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ASP] PASSED [ 23%] 638s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[CYS] PASSED [ 23%] 639s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[GLN] PASSED [ 23%] 639s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[GLU] PASSED [ 23%] 640s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[HIS] PASSED [ 23%] 640s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ILE] PASSED [ 23%] 641s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[LEU] PASSED [ 23%] 641s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[LYS] PASSED [ 23%] 642s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[MET] PASSED [ 23%] 642s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[PHE] PASSED [ 23%] 642s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[PRO] PASSED [ 23%] 643s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[SER] PASSED [ 23%] 643s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[THR] PASSED [ 23%] 644s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[TRP] PASSED [ 23%] 644s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[TYR] PASSED [ 23%] 644s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[VAL] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_no_chi1[ALA] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_no_chi1[GLY] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_sel_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_sels_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_sel_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_sels_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_sel_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_sels_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_ch1_sel_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_sels_fail PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_phi PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_psi PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_omega PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_chi1 PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_nodep PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_nodep PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_nodep PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_nodep PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_geometry-True-ref0] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_geometry-False-ref1] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_mass-True-ref0] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_mass-False-ref1] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-moment_of_inertia-True-ref0] PASSED [ 23%] 645s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-moment_of_inertia-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-asphericity-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-asphericity-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-shape_parameter-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-shape_parameter-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_geometry-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_geometry-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_mass-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_mass-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-moment_of_inertia-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-moment_of_inertia-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-asphericity-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-asphericity-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-shape_parameter-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-shape_parameter-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_geometry-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_geometry-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_mass-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_mass-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[moment_of_inertia-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[moment_of_inertia-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[asphericity-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[asphericity-False-ref1] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_geometry-True-ref0] PASSED [ 23%] 646s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_geometry-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_mass-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_mass-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[radius_of_gyration-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[radius_of_gyration-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[shape_parameter-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[shape_parameter-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[asphericity-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[asphericity-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[moment_of_inertia-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[moment_of_inertia-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bbox-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bbox-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bsphere-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bsphere-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[principal_axes-True-ref0] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[principal_axes-False-ref1] PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_int PASSED [ 23%] 647s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_slice PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_slice2 PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_IE PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bad_make PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_invalid_index_initialisation PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_atoms PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_residues PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_zero_atoms_residues PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_segments PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_zero_atoms_segments PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids_dim PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums_dim PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids_dim PASSED [ 23%] 648s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_len PASSED [ 23%] 649s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_of_geometry PASSED [ 23%] 649s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_of_mass PASSED [ 23%] 649s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_duplicates[center_of_geometry] PASSED [ 23%] 649s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_duplicates[center_of_mass] PASSED [ 23%] 649s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[resids-residues-center_of_geometry] PASSED [ 23%] 649s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[resids-residues-center_of_mass] PASSED [ 23%] 650s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[segids-segments-center_of_geometry] PASSED [ 23%] 650s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[segids-segments-center_of_mass] PASSED [ 23%] 650s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-resids-residues-center_of_geometry] PASSED [ 23%] 650s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-resids-residues-center_of_mass] PASSED [ 23%] 650s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-segids-segments-center_of_geometry] PASSED [ 23%] 651s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-segids-segments-center_of_mass] PASSED [ 23%] 651s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-resids-residues-center_of_geometry] PASSED [ 23%] 651s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-resids-residues-center_of_mass] PASSED [ 23%] 651s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-segids-segments-center_of_geometry] PASSED [ 23%] 651s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-segids-segments-center_of_mass] PASSED [ 23%] 651s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[molnums-molecules-center_of_geometry] PASSED [ 24%] 652s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[molnums-molecules-center_of_mass] PASSED [ 24%] 652s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[fragindices-fragments-center_of_geometry] PASSED [ 24%] 653s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[fragindices-fragments-center_of_mass] PASSED [ 24%] 654s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-molnums-molecules-center_of_geometry] PASSED [ 24%] 655s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-molnums-molecules-center_of_mass] PASSED [ 24%] 657s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-fragindices-fragments-center_of_geometry] PASSED [ 24%] 658s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-fragindices-fragments-center_of_mass] PASSED [ 24%] 659s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-molnums-molecules-center_of_geometry] PASSED [ 24%] 659s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-molnums-molecules-center_of_mass] PASSED [ 24%] 660s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-fragindices-fragments-center_of_geometry] PASSED [ 24%] 661s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-fragindices-fragments-center_of_mass] PASSED [ 24%] 661s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_wrong_compound PASSED [ 24%] 661s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_fail[molecules] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_fail[fragments] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-None] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-weights1] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-weights2] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-None] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-weights1] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-weights2] PASSED [ 24%] 662s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-None] PASSED [ 24%] 663s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-weights1] PASSED [ 24%] 663s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-weights2] PASSED [ 24%] 663s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-None] PASSED [ 24%] 663s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-weights1] PASSED [ 24%] 663s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-weights2] PASSED [ 24%] 663s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-None] PASSED [ 24%] 664s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-weights1] PASSED [ 24%] 664s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-weights2] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-None] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-weights1] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-weights2] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-None] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-weights1] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-weights2] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-None] PASSED [ 24%] 665s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-weights1] PASSED [ 24%] 666s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-weights2] PASSED [ 24%] 666s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-None] PASSED [ 24%] 666s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-weights1] PASSED [ 24%] 666s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-weights2] PASSED [ 24%] 666s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-None] PASSED [ 24%] 667s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-weights1] PASSED [ 24%] 667s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-weights2] PASSED [ 24%] 667s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-None-False] PASSED [ 24%] 667s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-None-True] PASSED [ 24%] 667s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-weights1-False] PASSED [ 24%] 667s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-weights1-True] PASSED [ 24%] 667s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-None-False] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-None-True] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-weights1-False] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-weights1-True] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-None-False] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-None-True] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-weights1-False] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-weights1-True] PASSED [ 24%] 668s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-None-False] PASSED [ 24%] 669s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-None-True] PASSED [ 24%] 669s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-weights1-False] PASSED [ 24%] 669s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-weights1-True] PASSED [ 24%] 669s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-None-False] PASSED [ 24%] 670s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-None-True] PASSED [ 24%] 670s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-weights1-False] PASSED [ 24%] 671s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-weights1-True] PASSED [ 24%] 671s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[-group-False] PASSED [ 24%] 671s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[-group-True] PASSED [ 24%] 671s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[resids-residues-False] PASSED [ 24%] 671s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[resids-residues-True] PASSED [ 24%] 671s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[segids-segments-False] PASSED [ 24%] 672s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[segids-segments-True] PASSED [ 24%] 672s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[molnums-molecules-False] PASSED [ 24%] 672s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[molnums-molecules-True] PASSED [ 24%] 672s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[fragindices-fragments-False] PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[fragindices-fragments-True] PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_coordinates PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_principal_axes PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_principal_axes_duplicates PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_moment_of_inertia_duplicates PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_radius_of_gyration_duplicates PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_indices_ndarray PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_indices PASSED [ 24%] 673s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids_ndarray PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums_ndarray PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnames_ndarray PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnames PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_names_ndarray PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_names PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids_ndarray PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_masses_ndarray PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_masses PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_charges_ndarray PASSED [ 24%] 674s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_charges PASSED [ 24%] 675s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bad_add_AG PASSED [ 24%] 675s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_false PASSED [ 24%] 675s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_true PASSED [ 24%] 675s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_repr PASSED [ 24%] 675s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_resnum_single PASSED [ 24%] 675s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_resname_single PASSED [ 24%] 675s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox_badshape PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox_noshape PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_residues PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_integer PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_slice PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_slice_empty PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_advancedslice PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_2d_indexing_caught PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_boolean_indexing_2[sel0] PASSED [ 24%] 676s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_boolean_indexing_2[sel1] PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_IE PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_dihedral_ValueError PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_improper PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_dihedral_equals_improper PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond_pbc PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond_ValueError PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_angle PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_angle_ValueError PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_shape_parameter PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_shape_parameter_duplicates PASSED [ 24%] 677s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_asphericity PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_asphericity_duplicates PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_positions PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_names PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_atom_order PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTimestep::test_partial_timestep PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[ix] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[ids] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[resids] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[segids] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[charges] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[masses] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[tempfactors] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_bonds PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_positions_2D PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_position_no_keyfunc PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_position PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupPickle::test_atomgroup_pickle[name CA] PASSED [ 24%] 678s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupPickle::test_atomgroup_pickle[segid 4AKE] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_segid PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ACE] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ALA] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ALAD] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ARG] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ARGN] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASF] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASH] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASN] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASN1] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASP] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASPH] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CALA] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CARG] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASF] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASN] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASP] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CCYS] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CCYX] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLN] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLU] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLY] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHID] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHIE] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHIP] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CILE] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CLEU] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CLYS] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CME] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CMET] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CPHE] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CPRO] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CSER] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTHR] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTRP] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTYR] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CVAL] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYM] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS1] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS2] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYSH] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYX] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[DAB] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLH] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLN] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLU] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLUH] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLY] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HID] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIE] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIP] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS] PASSED [ 24%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS1] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS2] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISA] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISB] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISD] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISH] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSD] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSP] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HYP] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ILE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LEU] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYN] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYS] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYSH] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[MET] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[MSE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NALA] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NARG] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NASN] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NASP] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NCYS] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NCYX] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLN] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLU] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLY] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHID] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHIE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHIP] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NILE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NLEU] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NLYS] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NME] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NMET] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NPHE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NPRO] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NSER] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTHR] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTRP] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTYR] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NVAL] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ORN] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PGLU] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PHE] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PRO] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[QLN] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[SER] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[THR] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[TRP] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[TYR] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[VAL] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_backbone PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resid_single PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resid_range PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_selgroup PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_fullselgroup PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resnum_single PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resnum_range PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resname PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_name PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_atom PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_atom_empty PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_type PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_and PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_or PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_not PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_around[around 4.0 bynum 1943] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_around[around 4.0 index 1942] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphlayer[sphlayer 4.0 6.0 bynum 1281] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphlayer[sphlayer 4.0 6.0 index 1280] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_isolayer[isolayer 4.0 6.0 bynum 1281] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_isolayer[isolayer 4.0 6.0 index 1280] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphzone[sphzone 6.0 bynum 1281] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphzone[sphzone 6.0 index 1280] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cylayer[cylayer 4.0 6.0 10 -10 bynum 1281] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cylayer[cylayer 4.0 6.0 10 -10 index 1280] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_cylayer PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cyzone[cyzone 6.0 10 -10 bynum 1281] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cyzone[cyzone 6.0 10 -10 index 1280] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_cyzone PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_point PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_prop PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_bynum PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_index PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_byres[byres bynum 0:5-19] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_byres[byres index 0:19-43] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_same_resname PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_same_segment PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_same PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_selection PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_parenthesized_expression PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_no_space_around_parentheses PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_concatenated_selection PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_global PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname TYR THR-resname T*R] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN GLN-resname *N] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN ASP-resname AS*] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname TYR THR-resname T?R] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN ASP HSD-resname *S?] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname LEU LYS-resname L**] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname MET-resname *M*] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname GLN GLY-resname GL[NY]] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname GLU-resname GL[!NY]] PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_protein PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_backbone PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_type PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_protein PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_resid_single PASSED [ 25%] 679s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_type PASSED [ 25%] 680s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_protein PASSED [ 25%] 680s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_backbone PASSED [ 25%] 681s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_resid_single PASSED [ 25%] 681s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as bynum 1 or bynum 10] PASSED [ 25%] 681s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as bynum 1 10] PASSED [ 25%] 682s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as index 0 or index 9] PASSED [ 25%] 682s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as index 0 9] PASSED [ 25%] 683s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cylayer[cylayer 10 20 20 -20 bynum 3554] PASSED [ 25%] 683s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cylayer[cylayer 10 20 20 -20 index 3553] PASSED [ 25%] 683s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cyzone[cyzone 20 20 -20 bynum 3554] PASSED [ 25%] 684s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cyzone[cyzone 20 20 -20 index 3553] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_same_fragment[same fragment as bynum 1] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_same_fragment[same fragment as index 0] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_moltype PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_molnum[molnum 1-reference0] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_molnum[molnum 2:4-reference1] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[aromatic-5] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[not aromatic-1] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type N and aromatic-1] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type C and aromatic-4] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts n-indices0] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [#7]-indices1] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a-indices2] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts c-indices3] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [*-]-indices4] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([!#1]);$([!R][R])]-indices5] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([C@H](-[CH2])(-[O-])-C=O)]-indices6] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([C@@H](-[CH2])(-[O-])-C=O)]-indices7] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a and type C-indices8] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[(smarts a) and (type C)-indices9] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a and type N-indices10] SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_invalid_smarts_sel_raises_error SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_rdkit_kwargs_to_converter SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_max_matches_to_converter SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_use_chirality_to_converter SKIPPED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic_all PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicbackbone PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicbase PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicsugar PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_around[True] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_around[False] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_layer[True] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_layer[False] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_isolayer[True] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_isolayer[False] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_zone[True] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_zone[False] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_point[True] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_point[False] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_cyzone[distmat-True] PASSED [ 25%] 685s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_cyzone[distmat-False] PASSED [ 25%] 686s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[True-33] PASSED [ 25%] 686s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[False-25] PASSED [ 25%] 686s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[True] PASSED [ 25%] 686s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[False] PASSED [ 25%] 687s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[True] PASSED [ 25%] 687s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[False] PASSED [ 25%] 688s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_isolayer[True] PASSED [ 25%] 688s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_isolayer[False] PASSED [ 25%] 689s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_zone[True] PASSED [ 25%] 689s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_zone[False] PASSED [ 25%] 689s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_point[True] PASSED [ 25%] 690s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_point[False] PASSED [ 25%] 690s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_around PASSED [ 25%] 691s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_sphlayer PASSED [ 25%] 691s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_sphlayer PASSED [ 25%] 691s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_isolayer PASSED [ 25%] 692s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_sphzone PASSED [ 25%] 692s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_sphzone PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_point_1 PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_point_2 PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass < 1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass <1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass< 1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass<1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge < 1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge <1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge< 1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge<1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass < 1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass <1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass< 1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass<1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge < 1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge <1.5] PASSED [ 25%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge< 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge<1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass > 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass >1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass> 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass>1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge > 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge >1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge> 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge>1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass > 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass >1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass> 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass>1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge > 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge >1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge> 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge>1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass == 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass ==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass== 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge == 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge ==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge== 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass == 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass ==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass== 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge == 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge ==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge== 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge==1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass != 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass !=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge != 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge !=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass != 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass !=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge != 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge !=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!= 1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!=1.5] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-==] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-!=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-==] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-!=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-==] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-!=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-==] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-!=] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_bonded_1 PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_nobonds_warns PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name and H] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name )] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid abcd] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum 7a7] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid 1-] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken == tasty] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken <= 7.4] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass ^^ 12.0] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same this as resid 1] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same resid resname mass 5.0] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name H and] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[naem H] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid and name C] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum ] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[bynum or protein] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[index or protein] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass < 4.0 hello] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass > 10. and group this] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0 to] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass to 3.0] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0:] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass :3.0] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1-] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[chirality ] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[formalcharge 0.2] PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_invalid_prop_selection PASSED [ 26%] 693s testsuite/MDAnalysisTests/core/test_atomselections.py::test_segid_and_resid PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameABA or name NameACA or name NameADA-name NameABA NameACA NameADA] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[type TypeE or type TypeD or type TypeB-type TypeE TypeD TypeB] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[resname RsC or resname RsY-resname RsC RsY] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameAB* or name NameACC-name NameAB* NameACC] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[segid SegA or segid SegC-segid SegA SegC] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[(name NameABC or name NameABB) and (resname RsD or resname RsF)-name NameABC NameABB and resname RsD RsF] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resid] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resnum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-bynum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-index] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resid] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resnum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-bynum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-index] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resid] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resnum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-bynum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-index] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resid] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resnum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-bynum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-index] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resid] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resnum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-bynum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-index] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resid] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resnum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-bynum] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-index] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_resid_implicit_icode PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_1 PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_2 PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_3 PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_4 PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_5 PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_VE PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_range_VE PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same residue as -11] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same resid as-72] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[byres-11] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[all] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[protein] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[backbone] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleic] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleicbackbone] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name O] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name N*] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname stuff] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname ALA] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[type O] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 0] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 1] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[bynum 1-10] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[segid SYSTEM] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 163] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 1-10] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resnum 2] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[around 10 resid 1] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[point 0 0 0 10] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphzone 10 resid 1] PASSED [ 26%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphlayer 0 10 index 1] PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cyzone 15 4 -8 index 0] PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cylayer 5 10 10 -8 index 1] PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[prop abs z <= 100] PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[byres index 0] PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[same resid as index 0] PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_yet_global PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_arbitrary_atom_group_raises_error PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_sel PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_record_type_sel PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_element_sel PASSED [ 27%] 694s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chain_sel PASSED [ 27%] 695s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.8 to 1.2-23844-selkwargs0] PASSED [ 27%] 695s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 8e-1 to 1200e-3-23844-selkwargs1] PASSED [ 27%] 695s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5--3-2-selkwargs2] PASSED [ 27%] 695s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -3 : -5-0-selkwargs3] PASSED [ 27%] 696s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 --3-2-selkwargs4] PASSED [ 27%] 696s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5- -3-2-selkwargs5] PASSED [ 27%] 697s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 - -3-2-selkwargs6] PASSED [ 27%] 697s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10:3-34945-selkwargs7] PASSED [ 27%] 698s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 :3-34945-selkwargs8] PASSED [ 27%] 698s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10: 3-34945-selkwargs9] PASSED [ 27%] 698s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 : 3-34945-selkwargs10] PASSED [ 27%] 699s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 -3-0-selkwargs11] PASSED [ 27%] 699s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs12] PASSED [ 27%] 699s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs13] PASSED [ 27%] 700s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 - 0.30000000000000004-10-selkwargs14] PASSED [ 27%] 700s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-5-selkwargs15] PASSED [ 27%] 700s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-5-selkwargs16] PASSED [ 27%] 700s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-10-selkwargs17] PASSED [ 27%] 701s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-10-selkwargs18] PASSED [ 27%] 702s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-10-selkwargs19] PASSED [ 27%] 702s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.3-10-selkwargs20] PASSED [ 27%] 702s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-10-selkwargs21] PASSED [ 27%] 703s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-5-selkwargs22] PASSED [ 27%] 703s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel_warning PASSED [ 27%] 703s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -10 to 3-13] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -5--3-3] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -3 : -5-0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_negative_resid PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity-5] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity true-5] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[not aromaticity-15] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity False-15] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel_error SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_error_selection_for_strange_dtype PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_default_selection_on_ordered_unique_group[name N-ix0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_default_selection_on_ordered_unique_group[resname GLU-ix1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[name N-True-ix0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[name N-False-ix1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[resname GLU-True-ix2] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[resname GLU-False-ix3] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-True-ix0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-False-ix1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-True-ix2] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-False-ix3] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@@H](C(=O)O)N-S] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@H](C(=O)O)N-R] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[R-1] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[S-1] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[R S-2] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[S R-2] SKIPPED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[1-1-NH2] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[-1-1-OD2] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[0-34-N] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[-1 1-2-OD2] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_size PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_size_independent PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[_AR] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[RA] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[_RS] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[SR] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[_AR] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[RA] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[_RS] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[SR] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_move_atom PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_move_residue PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA2] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA3] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA4] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA5] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA6] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA7] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA8] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA9] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA10] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA11] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA12] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA13] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA14] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA15] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA16] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA17] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA18] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA19] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA20] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_n_attrs PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[names] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[masses] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[resids] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[bonds] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[tt] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_universe_copy PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_positions PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_change_positions PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_topology PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_change_topology PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_copying.py::test_pdb_copy PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_total_frags[u0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_total_frags[u1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_external_ordering[u0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_external_ordering[u1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_internal_ordering[u0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_internal_ordering[u1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_access[u0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_access[u1] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_access[u0] PASSED [ 27%] 704s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_access[u1] PASSED [ 27%] 705s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_empty_atomgroup_access PASSED [ 27%] 705s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragments_nobonds_NDE PASSED [ 27%] 705s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_fragment_nobonds_NDE PASSED [ 27%] 705s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragment_cache_invalidation_bond_making PASSED [ 27%] 705s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragment_cache_invalidation_bond_breaking PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_fragments.py::test_tpr_fragments PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-False] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-True] PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_get PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_get PASSED [ 27%] 706s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_set PASSED [ 27%] 707s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_set PASSED [ 27%] 707s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_pos_iteration PASSED [ 27%] 707s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_vel_iteration PASSED [ 27%] 707s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_for_iteration PASSED [ 27%] 707s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestGROVelocities::testParse_velocities PASSED [ 27%] 707s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForces::testForces PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForcesNativeUnits::testForces PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_get_velocities PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_velocities PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_set_velocities PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_get_forces PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_forces PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_set_forces PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_dimensions PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group0] PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group1] PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group2] PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group0] PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group1] PASSED [ 27%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup1] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup2] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_passive_decorator[ag0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_error_empty_group[ag0] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[atom] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[residue] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[segment] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[atom] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[residue] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[segment] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[atom] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[residue] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[segment] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[atom] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[residue] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[segment] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-array] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-array] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-array] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[atom] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[residue] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[segment] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl0-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl1-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl2-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl3-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl4-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl5-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl6-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl7-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl8-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl9-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl10-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl11-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl12-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl13-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl0-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl1-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl2-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl3-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl4-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl5-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl6-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl7-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl8-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl9-] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl10-list] PASSED [ 28%] 708s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl11-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl12-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl13-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl0-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl1-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl2-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl3-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl4-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl5-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl6-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl7-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl8-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl9-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl10-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl11-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl12-list] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl13-] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-0] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-1] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--1] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--2] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-0] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-1] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--1] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--2] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-0] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-1] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--1] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--2] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[atom] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[residue] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[segment] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a0-b0-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a1-b1-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a2-b2-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a3-b3-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a4-b4-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a5-b5-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a6-b6-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a7-b7-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a8-b8-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a9-b9-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a10-b10-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a11-b11-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a0-b0-c0-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a1-b1-c1-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a2-b2-c2-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a3-b3-c3-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a4-b4-c4-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a5-b5-c5-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a6-b6-c6-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a7-b7-c7-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a8-b8-c8-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a9-b9-c9-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a10-b10-c10-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a11-b11-c11-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a12-b12-c12-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a13-b13-c13-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a14-b14-c14-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a15-b15-c15-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a16-b16-c16-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a17-b17-c17-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a18-b18-c18-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a19-b19-c19-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a20-b20-c20-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a21-b21-c21-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a22-b22-c22-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a23-b23-c23-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a0-b0-c0-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a1-b1-c1-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a2-b2-c2-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a3-b3-c3-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a4-b4-c4-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a5-b5-c5-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a6-b6-c6-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a7-b7-c7-AtomGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a8-b8-c8-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a9-b9-c9-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a10-b10-c10-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a11-b11-c11-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a12-b12-c12-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a13-b13-c13-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a14-b14-c14-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a15-b15-c15-ResidueGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a16-b16-c16-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a17-b17-c17-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a18-b18-c18-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a19-b19-c19-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a20-b20-c20-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a21-b21-c21-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a22-b22-c22-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a23-b23-c23-SegmentGroup] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[atom] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[residue] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[segment] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[atom] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[residue] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[segment] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-residue] PASSED [ 28%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-segment] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-atom] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-segment] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-atom] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-residue] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a0-b0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a1-b1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a2-b2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a3-b3] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a4-b4] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a5-b5] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a6-b6] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a7-b7] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a8-b8] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a9-b9] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a10-b10] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a11-b11] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a12-b12] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a13-b13] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a14-b14] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a15-b15] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a16-b16] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a17-b17] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a18-b18] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a19-b19] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a20-b20] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a21-b21] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a22-b22] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a23-b23] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_atomgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_residuegroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_segmentgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_residue PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_segment PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_atomgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_segment PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_atomgroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_residuegroup PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup_unique PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup_unique PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup_unique PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup_listcomp PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup_listcomp PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup_listcomp PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x0-y0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x1-y1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x2-y2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x3-y3] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x4-y4] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x5-y5] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x0-y0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x1-y1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x2-y2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x3-y3] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x4-y4] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x5-y5] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestMetaclassMagic::test_new_class PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids0] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids1] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids2] PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float_string PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int_float PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string_int PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atom_repr PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residue_repr PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segment_repr PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_repr PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_short PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_long PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_repr PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_short PASSED [ 29%] 709s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_long PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_repr PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_str PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group0] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group1] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group2] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-atoms] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-residues] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-segments] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left0-right0] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left1-right1] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left2-right2] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left3-right3] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left4-right4] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left5-right5] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left6-right6] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left7-right7] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left8-right8] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left9-right9] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left10-right10] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left11-right11] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left12-right12] PASSED [ 29%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left13-right13] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left14-right14] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left15-right15] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left16-right16] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left17-right17] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left18-right18] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left19-right19] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left20-right20] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left21-right21] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left22-right22] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left23-right23] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left24-invalid] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left0-right0] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left1-right1] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left2-right2] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left3-right3] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left4-right4] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left5-right5] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left6-right6] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left7-right7] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left8-right8] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left9-right9] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left10-right10] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left11-right11] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_only_same_level_different_universes PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-add-concatenate] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-sub-difference] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-and_-intersection] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-or_-union] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-xor-symmetric_difference] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-add-concatenate] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-sub-difference] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-and_-intersection] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-or_-union] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-xor-symmetric_difference] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-add-concatenate] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-sub-difference] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-and_-intersection] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-or_-union] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-xor-symmetric_difference] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[atoms-residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[atoms-segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[residues-atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[residues-segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[segments-atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[segments-residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAtomGroup::test_PDB_atom_repr PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[atoms] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[residues] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[segments] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-name] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-resid] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-segid] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-name] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-resid] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-segid] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-name] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-resid] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-segid] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_name PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_resid PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_segid PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_name PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_resid PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_segid PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_name PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_resid PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_segid PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-names] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-resids] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-segids] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-names] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-resids] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-segids] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-names] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-resids] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-segids] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_group[masses] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_group[altLocs] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_component[mass] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_component[altLoc] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_plural_topattr_from_component[masses-mass] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_plural_topattr_from_component[altLocs-altLoc] PASSED [ 30%] 710s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[masses-mass] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[altLocs-altLoc] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[elements-element] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[tempfactors-tempfactor] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[bonds-bonds] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_non_topattr PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_unwrap_without_bonds PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attr_method PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attrprop PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrprop_wrong_group PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrmethod_wrong_group PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[altlocs] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[alt_Locs] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[atoms] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[atoms] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[atoms] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[atoms] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-fragments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-molecules] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-residues] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-group] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-segments] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[bonds] PASSED [ 30%] 711s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[angles] PASSED [ 30%] 712s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[dihedrals] PASSED [ 30%] 712s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[impropers] PASSED [ 30%] 713s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[bonds-1] PASSED [ 30%] 713s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[angles-3] PASSED [ 30%] 714s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[dihedrals-4] PASSED [ 30%] 714s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[bonds-9] PASSED [ 30%] 715s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[angles-15] PASSED [ 30%] 716s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[dihedrals-12] PASSED [ 30%] 716s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[bonds-13] PASSED [ 30%] 716s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[angles-27] PASSED [ 30%] 717s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[dihedrals-38] PASSED [ 30%] 717s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_invalid_connection_error PASSED [ 30%] 718s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_get_empty_group[True] PASSED [ 30%] 718s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_get_empty_group[False] PASSED [ 30%] 719s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[bonds-9] PASSED [ 30%] 719s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[angles-14] PASSED [ 30%] 720s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[dihedrals-9] PASSED [ 30%] 721s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[impropers-0] PASSED [ 30%] 721s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[bonds-11] PASSED [ 30%] 722s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[angles-22] PASSED [ 30%] 722s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[dihedrals-27] PASSED [ 30%] 722s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[impropers-0] PASSED [ 30%] 723s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[bonds-157] PASSED [ 30%] 724s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[angles-290] PASSED [ 30%] 724s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[dihedrals-351] PASSED [ 30%] 725s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[bonds-158] PASSED [ 30%] 725s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[angles-294] PASSED [ 30%] 726s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[dihedrals-360] PASSED [ 30%] 726s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_invalid_connection_error PASSED [ 30%] 727s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_get_empty_group[True] PASSED [ 30%] 727s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_get_empty_group[False] PASSED [ 30%] 728s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_bonds-9] PASSED [ 30%] 729s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_angles-15] PASSED [ 31%] 729s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_dihedrals-12] PASSED [ 31%] 729s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[bonds-13] PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[angles-27] PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[dihedrals-38] PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_ag_ix PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_rg_ix PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_sg_ix PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atom_ix_array PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residue_ix_array PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segment_ix_array PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_indices PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_residue_upshift PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_segment_upshift PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_atom_downshift PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_resindices PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_segment_upshift PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_atom_downshift PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_residue_downshift PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_segindices PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_failure_singular PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_failure_multiple PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_success PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_failure_errormessage PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_residue.py::test_type PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_residue.py::test_index PASSED [ 31%] 730s testsuite/MDAnalysisTests/core/test_residue.py::test_atom_order PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residue.py::test_residue_pickle PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::test_sequence_import_error SKIPPED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_string PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_SeqRecord PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_SeqRecord_default PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_Seq PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_nonIUPACresname_VE PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_format_TE PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_newResidueGroup PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_n_atoms PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_n_residues PASSED [ 31%] 731s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_resids_dim PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_resnums_dim PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_segids_dim PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_len PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resids PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resids_updates_self PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_single PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_many PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_ValueError PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_single SKIPPED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_many SKIPPED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_ValueError SKIPPED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_merge_residues SKIPPED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_masses SKIPPED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_atom_order PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_get_next_residue PASSED [ 31%] 732s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_get_prev_residue PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_residuegroup_pickle[name CA] PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_residuegroup_pickle[segid 4AKE] PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_type PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_index PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_slicing PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_advanced_slicing PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_atom_order PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_residue_pickle[1] PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_residue_pickle[-1] PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_newSegmentGroup PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_n_atoms PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_n_residues PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_resids_dim PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_resnums_dim PASSED [ 31%] 733s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_segids_dim PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segids PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segid_updates_ PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segids_many PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_atom_order PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_segmentgroup_pickle PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_a2r PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2a_1d PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2a_2d PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2s PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2r_1d PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2r_2d PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2a_1d PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2a_2d PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_move_atom_simple PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_move_residue_simple PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_lazy_building_RA PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_lazy_building_SR PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_serialization PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_single_residue PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residuegroup PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residue_list PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_residuegroup_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_residue_list_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residuegroup_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residue_list_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_list_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_segment_NIE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_segment_NIE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_single_segment PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segmentgroup PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segment_list PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_segmentgroup_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_list_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segmentgroup_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_list_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_list_TE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_downshift_dtype_square PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_downshift_dtype_ragged PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_shape_square PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_shape_ragged PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_contents_square PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_contents_ragged PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_intra_values PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_intra_values_2 PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_end_values PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_end_values_2 PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_start_values_2 PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_segment_no_attrs PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_residue_no_attrs PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_residue_no_attrs_one_segment PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_ambiguous_segment_NDE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_missing_attr_NDE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_NDE_message PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_NDE_message_2 PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_with_attrs PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_missing_attr_NDE_Segment PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Segment_NDE_message PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Segment_with_attr PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyGuessed::test_guessed PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyGuessed::test_read PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_make_topology_no_attrs PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_resindex_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_segindex_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_len PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atom_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_atoms PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_singular PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_plural PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_residues PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_segments PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_len PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atom_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_atoms PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_singular PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_plural PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_residues PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_segments PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_atom_indices PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_residue_indices PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_segment_indices PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_len PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atom_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_atoms PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_singular PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_plural PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_residues PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_segments PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_prev_emptyresidue PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_next_emptyresidue PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_missing_values PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_missing_value_label PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_len PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atom_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_atoms PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_singular PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_plural PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_residues PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segments PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segment PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_missing_masses PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_len PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atom_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_atoms PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_singular PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_plural PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_residues PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segments PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segment PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_len PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residue_VE PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atoms PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atom PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_residues PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_singular PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_plural PASSED [ 31%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_segments PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_len PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residue_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_atoms PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_atom PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_residues PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_singular PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_plural PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_segments PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_len PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residue_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_atoms PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_atom PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_residues PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_singular PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_plural PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_segments PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_len PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residue_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atoms PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atom PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_residues PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_singular PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_plural PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_segments PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_atoms XFAIL [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_len PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segment_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_atoms PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_residues PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_segments PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_singular PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_plural PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_VE PASSED [ 32%] 734s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_principal_axes PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_principal_axes_handedness PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_align_principal_axes_with_self PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_align_principal_axes_with_x PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-0-level0] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-1-level1] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-2-level2] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-0-level0] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-1-level1] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-2-level2] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-0-level0] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-1-level1] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-2-level2] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_record_types_default PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_encoding PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_residue_record_types PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_segment_record_types PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_static_typing PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_static_typing_from_empty PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-center_of_mass] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-center_of_charge] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-total_charge] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[residues-total_charge] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_property[universe-models] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_property[atoms-n_fragments] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_warn_selection_for_strange_dtype PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_get_group PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_get_atom PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_set_group PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_set_atom PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactor_sel PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_residue[ResA] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_residue[ResB] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_segment[SegA] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_segment[SegB] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_issue3437 PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[group] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[segments] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[residues] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[molecules] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[fragments] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[group] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[segments] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[residues] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[molecules] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[fragments] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[group] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[segments] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[residues] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[molecules] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[fragments] PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_repr PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_eq PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ne PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_gt PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_lt PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_iter PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_len PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_hash PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_indices PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_partner PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_partner_VE PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_bondlength PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_bondrepr PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle_repr PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle_180 PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_dihedral PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_dihedral_repr PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_improper PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_improper_repr PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_repr PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_repr_VE PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_partner PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_distance PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr_VE PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_len PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_iter PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_keyerror PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_universe PASSED [ 32%] 735s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_types PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_contains PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_uniqueness PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_reversal PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_no_reversal PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_types PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_contains PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_uniqueness PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_reversal PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_types PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_contains PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_uniqueness PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_reversal PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation_TG PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_tg_creation_bad_btype PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_tg_creation_notype PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angle_tg_creation_notype PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedral_tg_creation_notype PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_guessed_tg PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_guessed_tg_2 PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_equality PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_TopologyGroup PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[bonds] PASSED [ 32%] 736s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[angles] PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[dihedrals] PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[impropers] PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_strict_intersection PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TopologyGroups PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_empty_to_TG PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TO_to_empty_TG PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TG_to_empty_TG PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_singleitem PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_wrongtype_TopologyGroup PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_add_TopologyGroup PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_single PASSED [ 32%] 737s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_slice PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_fancy PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_bool PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_bool_IE PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom1 PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom2 PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom3_IE PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom3 PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom4_IE PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom4 PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_bonds PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_bonds PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_angles PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_angles PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_dihedrals PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_dihedrals PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_impropers PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_bond_length_pbc PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_cross_universe_eq PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_zero_size_TG_indices_bonds PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_zero_size_TG_indices_angles PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_topology_stringio PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_trajectory_stringio PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_make_universe_stringio_no_format PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_no_trajectory_AE PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_unrecognizedformat_VE PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_unrecognizedformat_VE_msg PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_IE PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_IE_msg PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_filename_IE_msg PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_invalidfile_IE_msg PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_invalidpermissionfile_IE_msg PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_VE PASSED [ 32%] 738s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_memory_reader_success PASSED [ 32%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_memory_reader_fails PASSED [ 32%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_kwargs PASSED [ 32%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_topology_class_with_coords PASSED [ 32%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_empty_ROMol SKIPPED [ 32%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_default SKIPPED [ 32%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_from_bad_smiles SKIPPED [ 32%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_no_Hs SKIPPED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_gencoords_without_Hs_error SKIPPED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_generate_coordinates_numConfs SKIPPED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_rdkit_kwargs SKIPPED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_coordinates SKIPPED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_bad_topology PASSED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new PASSED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_returns_Universe PASSED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_None_returns_Universe PASSED [ 33%] 739s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_TypeError PASSED [ 33%] 740s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_structure PASSED [ 33%] 740s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_multiple_list PASSED [ 33%] 740s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_multiple_args PASSED [ 33%] 740s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_pickle PASSED [ 33%] 740s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[int] PASSED [ 33%] 740s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[float32] PASSED [ 33%] 740s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[float64] PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestTransformations::test_callable PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestTransformations::test_list PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_automatic_type_and_mass_guessing PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_no_type_and_mass_guessing PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_invalid_context PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_invalid_attributes PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_guess_masses_before_types PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_guessing_read_attributes PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessMasses::test_universe_loading_no_warning PASSED [ 33%] 741s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_no_vdwradii PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_with_vdwradii PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_off PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_arguments PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.55-0.1-2] PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.9-1.6-1] PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.5-0.2-2] PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.1-0.1-0] PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds_no_vdwradii PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds_with_vdwradii PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_guess_bonds_periodicity PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_guess_read_bonds PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_w_timeseries PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_wo_timeseries PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_w_timeseries_frame_interval PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_wo_timeseries_frame_interval PASSED [ 33%] 742s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_existing_universe PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_frame_interval_convention PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_with_start_stop PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_without_start PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_without_stop PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_without_start_stop PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_with_start_stop PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_dt PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_negative_start PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_negative_stop PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_transfer_to_memory_kwargs PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_in_memory_kwargs PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader_singleframe PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader_singleframe_2 PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_parser PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_both PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_TA_fail PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_nodefault_fail PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charge-charges-0.0_0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charges-charges-0.0_0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[name-names-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[names-names-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[type-types-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[types-types-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[element-elements-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[elements-elements-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radius-radii-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radii-radii-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainID-chainIDs-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainIDs-chainIDs-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactor-tempfactors-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactors-tempfactors-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[mass-masses-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[masses-masses-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charge-charges-0.0_1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charges-charges-0.0_1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactor-bfactors-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactors-bfactors-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancy-occupancies-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancies-occupancies-0.0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLoc-altLocs-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLocs-altLocs-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resid-resids-1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resids-resids-1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resname-resnames-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnames-resnames-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnum-resnums-1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnums-resnums-1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[icode-icodes-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[icodes-icodes-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[segid-segids-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[segids-segids-] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values2] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[angles-values3] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[dihedrals-values4] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[impropers-values5] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-values0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-values1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-rubbish] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-values3] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[angles-values4] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[angles-rubbish] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[dihedrals-values6] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[impropers-values7] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_attr_length_error PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_TA_fail PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_absent_fail PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_wrongtype_fail PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charge-charges] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charges-charges] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[bonds-bonds] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_transplants PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr_error PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr_from_ag PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_func_from_universe PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[bonds-values0] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[angles-values1] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[dihedrals-values2] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[impropers-values3] PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_reversed_duplicates PASSED [ 33%] 743s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[bonds-values0] PASSED [ 33%] 744s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[angles-values1] PASSED [ 33%] 744s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[dihedrals-values2] PASSED [ 33%] 744s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[impropers-values3] PASSED [ 33%] 744s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[bonds-values0] PASSED [ 33%] 744s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[angles-values1] PASSED [ 33%] 744s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[dihedrals-values2] PASSED [ 33%] 744s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[impropers-values3] PASSED [ 33%] 745s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[bonds-values0] PASSED [ 33%] 745s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[angles-values1] PASSED [ 33%] 745s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[dihedrals-values2] PASSED [ 33%] 745s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[impropers-values3] PASSED [ 33%] 745s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 33%] 745s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[angles-values1] PASSED [ 33%] 745s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[bonds-values0] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[angles-values1] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[dihedrals-values2] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[impropers-values3] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[bonds-values0] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[angles-values1] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[impropers-values3] PASSED [ 33%] 746s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[bonds-values0] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[angles-values1] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[dihedrals-values2] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[impropers-values3] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[angles-values1] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[bonds-values0] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[angles-values1] PASSED [ 33%] 747s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[dihedrals-values2] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[impropers-values3] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[impropers-values0] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[dihedrals-values1] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[angles-values2] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[bonds-values3] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[bonds-values0] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[angles-values1] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[dihedrals-values2] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[impropers-values3] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[bonds-2] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[angles-3] PASSED [ 33%] 748s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[impropers-4] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_bonds_refresh_fragments PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[angles-values1] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[bonds-values0] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[angles-values1] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[dihedrals-values2] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[impropers-values3] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[bonds-values0] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[angles-values1] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[dihedrals-values2] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[impropers-values3] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[bonds-values0] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[angles-values1] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[dihedrals-values2] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[impropers-values3] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[angles-values1] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[bonds-values0] PASSED [ 33%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[bonds-2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[angles-3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[impropers-4] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[impropers-values3] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_bonds_refresh_fragments PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_all_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/1hvr.pdb-72] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_all_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/conect_parsing.pdb-8] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[angles-values1] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 34%] 749s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_length PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_frame PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_second_frame PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_extra PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_resindex_warning PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_segindex_warning PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_trivial_warning PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_multiple_frames PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_iteration PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_velocities PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_forces PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_no_atoms PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_creation_raises_error PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::test_deprecate_b_tempfactors PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_universe.py::TestOnlyTopology::test_only_top PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-atoms] PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-residues] PASSED [ 34%] 750s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-segments] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-atoms] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-residues] PASSED [ 34%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-atoms] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-fragments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-molecules] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-residues] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-group] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-segments] PASSED [ 35%] 751s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-fragments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-molecules] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-group] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-fragments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-molecules] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-group] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-fragments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-molecules] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-group] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-fragments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-molecules] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-group] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-fragments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-molecules] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-group] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-residues] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-segments] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-atoms] PASSED [ 35%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-fragments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-molecules] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-group] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-fragments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-molecules] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-group] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-atoms] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-residues] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-segments] PASSED [ 36%] 752s testsuite/MDAnalysisTests/core/test_unwrap.py::test_uncontiguous PASSED [ 36%] 753s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_update PASSED [ 36%] 753s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_compounded_update PASSED [ 36%] 753s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update PASSED [ 36%] 754s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update2 PASSED [ 36%] 754s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_slice_is_static PASSED [ 36%] 754s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_kwarg_check PASSED [ 36%] 754s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_atoms PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_copy PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelectionNotraj::test_update PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_creating PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_next PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_nested_uags PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_driveby PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_representations PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_empty_UAG PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-atoms] PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-residues] PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-segments] PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-atoms] PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-residues] PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-segments] PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-atoms] PASSED [ 36%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-segments] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-atoms] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-residues] PASSED [ 37%] 755s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-segments] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-atoms] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-residues] PASSED [ 37%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-group] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-molecules] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-fragments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-atoms] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-group] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-segments] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-residues] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-molecules] PASSED [ 38%] 756s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-fragments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-residues] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-segments] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-atoms] PASSED [ 38%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-atoms] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-residues] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-segments] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box0] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box1] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_small_box PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_large_box PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_atoms PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[com] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[cog] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[com] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[cog] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[com] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[cog] PASSED [ 39%] 757s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[com] PASSED [ 39%] 758s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[cog] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-False] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-True] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-True] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-unit_cell0] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-unit_cell1] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-unit_cell2] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_over_max PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_last PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_closed PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_after_read PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_immediately PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[10] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[42] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[21] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_negative PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_iteration PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_open_wrong_mode PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_raise_not_existing PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_zero_based_frames_counting PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_closed PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-98] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-1] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-10] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_write_mode_file PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_iterating_twice PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-* DIMS ADK SEQUENCE FOR PORE PROGRAM * WRITTEN BY LIZ DENNING (6.2008) * DATE: 6/ 6/ 8 17:23:56 CREATED BY USER: denniej0 ] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-Created by DCD pluginREMARKS Created 06 July, 2014 at 17:29Y5~CORD,] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-* CHARMM TRICLINIC BOX TESTING * (OLIVER BECKSTEIN 2014) * BASED ON NPTDYN.INP : SCOTT FELLER, NIH, 7/15/95 * TEST EXTENDED SYSTEM CONSTANT PRESSURE AND TEMPERATURE * DYNAMICS WITH WATER BOX. * DATE: 7/ 7/14 13:59:46 CREATED BY USER: oliver ] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frames0] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frames1] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frames2] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frame_idx0] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frame_idx1] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frame_idx2] PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_no_header PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_twice PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_wrong_mode PASSED [ 39%] 758s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_mode PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_remarks_property PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_header PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_num_frames PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_dcd_coordinate_data_shape PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_seek PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_coord_match PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_unit_cell PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int32] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int64] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float32] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float64] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[array] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[list] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_xyz PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_box PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice0-98] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice1-98] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice2-98] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice3-98] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice4-98] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice5-2] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice6-10] PASSED [ 39%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice7-8] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice8-1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice9-0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice10-1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice11-1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice12-2] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice13-1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice14-1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice15-2] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice16-4] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice17-3] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice18-2] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fac-shape0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fca-shape1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[afc-shape2] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[acf-shape3] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[caf-shape4] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[cfa-shape5] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices2] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_random_unitcell PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_time[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_time[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_velocities_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_forces_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_lmbda_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_prec_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int32] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int64] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float32] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float64] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[array] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[list] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_prec PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_different_box_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_x_xtc PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_prec PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_velocities_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_forces_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int32] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int64] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float32] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float64] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_array_like[array] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_array_like[list] PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_box_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_natoms PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_x_trr PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_v PASSED [ 40%] 759s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_f PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_get_guesser PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_get_guesser_with_universe PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_invalid_attribute PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_attribute_with_missing_parent_attr PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_force_guessing PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_partial_guessing PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_force_guess_priority PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_partial_guess_attr_with_unknown_no_value_label PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_existing_read PASSED [ 40%] 759s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_existing_in_universe PASSED [ 40%] 760s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_force PASSED [ 40%] 766s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_out_of_order_init PASSED [ 40%] 771s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_out_of_order_guess PASSED [ 40%] 771s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_force_guess_overwrites_existing_bonds PASSED [ 40%] 797s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guessing_angles_respects_bond_kwargs PASSED [ 40%] 799s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guessing_dihedrals_respects_bond_kwargs PASSED [ 40%] 799s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_unsupported_attribute PASSED [ 40%] 800s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_singular PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_base.py::test_Universe_guess_bonds_deprecated PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[universe_input2] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.pdb] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_specific_array PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_from_universe PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_from_guesser_object PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_warn PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_get_atom_mass[H-1.008] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_get_atom_mass[XYZ-0.0] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_atom_mass PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_with_no_reference_elements PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_types PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element_empty PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element_singledigit PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element_1H PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_partial_guess_elements PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_elements_from_no_data PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[AO5*-O] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[F--F] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[HB1-H] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[OC2-O] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[1he2-H] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[3hg2-H] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[OH--O] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[HO-H] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[he-H] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[zn-ZN] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[Ca2+-CA] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[CA-C] PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_charge PASSED [ 40%] 802s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_Error PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bond_vdw_error PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bond_coord_error PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_angles_with_no_bonds PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_impropers PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_dihedrals_with_no_angles PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_impropers_with_angles PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_impropers_with_no_angles PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water_fudge_factor_passed[0-0] PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water_fudge_factor_passed[0.55-4] PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water_fudge_factor_passed[200-6] PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_adk PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_peptide PASSED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[c1ccccc1] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[C1=CC=CC=C1] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[CCO] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[c1ccccc1Cc1ccccc1] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[c1ccccc1] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[C1=CC=CC=C1] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[CCO] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[c1ccccc1Cc1ccccc1] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 40%] 803s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_aromaticity SKIPPED [ 40%] 805s testsuite/MDAnalysisTests/import/test_import.py::TestMDAImport::test_os_dot_fork_not_called PASSED [ 40%] 805s testsuite/MDAnalysisTests/import/test_import.py::TestMDAImport::test_os_dot_fork_not_none PASSED [ 40%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q0-res0-b0] PASSED [ 40%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q0-res0-b1] PASSED [ 40%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q1-res1-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q1-res1-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q2-res2-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q2-res2-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q3-res3-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q3-res3-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q4-res4-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q4-res4-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q5-res5-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q5-res5-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q6-res6-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q6-res6-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q7-res7-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q7-res7-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q8-res8-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q8-res8-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres0-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres0-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres1-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres1-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres2-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres2-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres3-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres3-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres4-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres4-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres5-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres5-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres6-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres6-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres7-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres7-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres8-b0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres8-b1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values3] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values4] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values5] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges0-ref0] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges1-ref1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges2-ref2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges3-ref3] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d_VE[arr10-arr20] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d_VE[arr11-arr21] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_pass PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_wrong_shape PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_wrong_dtype PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::test_transform_StoR_pass[float32] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::test_transform_StoR_pass[float64] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_noresults PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_1] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_2] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_1_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_2_atomgroup] PASSED [ 41%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_2] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_1_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_2_atomgroup] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_1] PASSED [ 42%] 805s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_2] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_1_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_2_atomgroup] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-None-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-None-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box0-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box0-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box1-1] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box1-100] PASSED [ 42%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-100] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-None] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box1] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box2] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system_universe-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system_universe-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system_universe-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system-ref_system_universe-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system_universe-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC_mixed_combinations[ref_system_universe-ref_system_universe-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system_universe-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC[ref_system_universe-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system_universe-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system-ref_system_universe-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system_universe-serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC_mixed_combinations[ref_system_universe-ref_system_universe-openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC2[serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_PBC2[openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::test_distance_array_overflow_exception PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::test_self_distance_array_overflow_exception PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_simple[serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_simple[openmp] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_outarray[serial] PASSED [ 43%] 806s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_outarray[openmp] PASSED [ 43%] 807s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_periodic[serial] PASSED [ 43%] 807s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_periodic[openmp] PASSED [ 43%] 807s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_simple[serial] PASSED [ 43%] 807s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_simple[openmp] PASSED [ 43%] 807s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-serial] PASSED [ 43%] 808s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-openmp] PASSED [ 43%] 808s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-serial] PASSED [ 43%] 808s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-serial] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-serial] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-serial] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-serial] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[all-np_slice0-serial] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[all-np_slice0-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice1-serial] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice1-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice2-serial] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice2-openmp] PASSED [ 43%] 809s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_simple[serial] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_simple[openmp] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_outarray[serial] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_outarray[openmp] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_periodic[serial] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_periodic[openmp] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_simple[serial] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_simple[openmp] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-serial] PASSED [ 43%] 810s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-None-openmp] PASSED [ 43%] 811s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-serial] PASSED [ 43%] 811s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[all-np_slice0-box1-openmp] PASSED [ 43%] 811s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-serial] PASSED [ 43%] 811s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-None-openmp] PASSED [ 43%] 811s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-serial] PASSED [ 43%] 811s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 0 to 8 -np_slice1-box1-openmp] PASSED [ 43%] 811s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-serial] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-None-openmp] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-serial] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy[index 9-np_slice2-box1-openmp] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice0-serial] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 0 to 8 -np_slice0-openmp] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice1-serial] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestSelfDistanceArrayDCD_TRIC::test_atomgroup_matches_numpy_tric[index 9-np_slice1-openmp] PASSED [ 43%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol-serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol-openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol_single-serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_transforms[S_mol_single-openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_selfdist[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_selfdist[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_distarray[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_distarray[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_dist[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_dist[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_wrong_wassenaar_distance[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestTriclinicDistances::test_pbc_wrong_wassenaar_distance[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[None] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[box1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::test_issue_3725[box2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::test_HAS_DISTOPIA_incompatible_distopia PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[serial-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds[openmp-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badbox[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badbox[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badresult[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_badresult[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[serial-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_triclinic[openmp-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-True-shift3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[serial-False-shift3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-True-shift3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_bonds_single_coords[openmp-False-shift3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[serial-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles[openmp-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_bad_result[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_bad_result[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift1-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift1-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift1-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift2-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift2-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift2-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift3-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift3-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-True-shift3-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift1-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift1-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift1-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift2-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift2-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift2-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift3-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift3-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[serial-False-shift3-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift1-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift1-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift1-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift2-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift2-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift2-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift3-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift3-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-True-shift3-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift1-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift1-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift1-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift2-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift2-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift2-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift3-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift3-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_angles_single_coords[openmp-False-shift3-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[serial-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions_atomgroups-float32] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals[openmp-positions_atomgroups-float64] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_wronglength[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_wronglength[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_bad_result[serial] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_bad_result[openmp] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift0-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift1-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift2-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-True-shift3-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift0-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift1-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift2-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[serial-False-shift3-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift0-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift1-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift2-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case3] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case4] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-True-shift3-case5] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case0] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case1] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case2] PASSED [ 44%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case3] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case4] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift0-case5] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case0] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case1] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case2] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case3] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case4] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift1-case5] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case0] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case1] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case2] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case3] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case4] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift2-case5] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case0] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case1] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case2] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case3] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case4] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_dihedrals_single_coords[openmp-False-shift3-case5] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_bonds[serial] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_bonds[openmp] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_angles[serial] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_angles[openmp] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_dihedrals[serial] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::TestCythonFunctions::test_numpy_compliance_dihedrals[openmp] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_pos-serial] PASSED [ 45%] 812s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_pos-openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_ag-serial] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_ortho_PBC[DCD_universe_ag-openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_pos_box-serial] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_pos_box-openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_ag_box-serial] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_tric_PBC[Triclinic_universe_ag_box-openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_strictly_in_central_image_ortho[serial] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_strictly_in_central_image_ortho[openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_in_central_image_tric[serial] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::Test_apply_PBC::test_coords_in_central_image_tric[openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_angles[serial] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_angles[openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_dihedrals[serial] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestPeriodicAngles::test_dihedrals[openmp] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_distance_array_atomgroup[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_distance_array_atomgroup[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[bruteforce-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[bruteforce-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[bruteforce-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[pkdtree-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[pkdtree-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[pkdtree-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[nsgrid-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[nsgrid-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[nsgrid-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_capped_distance[None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[bruteforce-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[bruteforce-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[bruteforce-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[pkdtree-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[pkdtree-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[pkdtree-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[nsgrid-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[nsgrid-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[nsgrid-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_self_capped_distance[None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_transform_RtoS_and_StoR[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_bonds_atomgroup[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_angles_atomgroup[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_calc_dihedrals_atomgroup[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestInputUnchanged::test_input_unchanged_apply_PBC_atomgroup[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_distance_array[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[serial-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[serial-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[serial-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[openmp-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[openmp-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_distance_array[openmp-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-False-None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[bruteforce-True-None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-False-None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[pkdtree-True-None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-False-None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[nsgrid-True-None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-None-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-None-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-False-None-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-0.0-box0] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-0.0-box1] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-0.0-None] PASSED [ 45%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_capped_distance[None-True-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-False-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[bruteforce-True-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-False-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[pkdtree-True-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-False-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[nsgrid-True-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-False-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_self_capped_distance[None-True-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[serial-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[serial-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[openmp-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_RtoS[openmp-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[serial-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[serial-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[openmp-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_transform_StoR[openmp-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[serial-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[serial-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[serial-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[openmp-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[openmp-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_bonds[openmp-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[serial-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[serial-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[serial-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[openmp-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[openmp-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_angles[openmp-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[serial-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[serial-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[serial-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[openmp-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[openmp-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_calc_dihedrals[openmp-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[serial-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[serial-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[openmp-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestEmptyInputCoordinates::test_empty_input_apply_PBC[openmp-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords1-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords1-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords1-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords2-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords2-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords2-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords3-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords3-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords3-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords4-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords4-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords4-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords5-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords5-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords5-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords6-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords6-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords6-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords7-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords7-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords7-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords8-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords8-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords8-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords9-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords9-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[serial-incoords9-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords1-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords1-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords1-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords2-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords2-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords2-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords3-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords3-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords3-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords4-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords4-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords4-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords5-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords5-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords5-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords6-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords6-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords6-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords7-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords7-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords7-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords8-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords8-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords8-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords9-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords9-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_distance_array[openmp-incoords9-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords1-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords1-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords1-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords2-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords2-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords2-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords3-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords3-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[serial-incoords3-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords1-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords1-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords1-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords2-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords2-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords2-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords3-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords3-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_distance_array[openmp-incoords3-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-False-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords0-True-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-False-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords1-True-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-0.0-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-None-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-None-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-False-None-None] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-0.0-box0] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-0.0-box1] PASSED [ 46%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords2-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords3-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords4-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords5-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords6-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords7-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords8-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[bruteforce-incoords9-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords0-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords1-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords2-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords3-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords4-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords5-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords6-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords7-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-False-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-0.0-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-0.0-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-None-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-None-box1] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords8-True-None-None] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-0.0-box0] PASSED [ 47%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-0.0-box1] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-0.0-None] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-None-box0] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-None-box1] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-False-None-None] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-0.0-box0] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-0.0-box1] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-0.0-None] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-None-box0] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-None-box1] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[pkdtree-incoords9-True-None-None] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-0.0-box0] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-0.0-box1] PASSED [ 48%] 813s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords0-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords1-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords2-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords3-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords4-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords5-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords6-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords7-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords8-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[nsgrid-incoords9-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords0-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords1-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords2-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords3-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-False-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords4-True-None-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-0.0-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-0.0-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-0.0-None] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-None-box0] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-None-box1] PASSED [ 48%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords5-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords6-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords7-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords8-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_capped_distance[None-incoords9-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords0-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords1-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords2-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[bruteforce-incoords3-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords0-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords1-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords2-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[pkdtree-incoords3-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords0-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords1-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords2-True-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-None-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-False-None-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-0.0-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-0.0-box1] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-0.0-None] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-None-box0] PASSED [ 49%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[nsgrid-incoords3-True-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-False-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords0-True-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-False-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords1-True-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-False-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords2-True-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-False-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-0.0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-0.0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-0.0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-None-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-None-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_self_capped_distance[None-incoords3-True-None-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords1-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords1-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords2-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords2-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords3-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[serial-incoords3-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords1-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords1-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords2-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords2-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords3-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_dtype_transform_RtoS[openmp-incoords3-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords1-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords1-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords1-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords2-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords2-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords2-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords3-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords3-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords3-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords4-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords4-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords4-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords5-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords5-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords5-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords6-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords6-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[serial-incoords6-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords1-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords1-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords1-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords2-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords2-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords2-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords3-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords3-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords3-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords4-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords4-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords4-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords5-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords5-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords5-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords6-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords6-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_bonds[openmp-incoords6-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords1-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords1-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords1-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords2-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords2-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords2-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords3-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords3-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords3-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords4-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords4-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords4-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords5-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords5-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords5-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords6-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords6-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords6-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords7-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords7-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords7-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords8-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords8-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords8-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords9-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords9-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords9-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords10-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords10-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[serial-incoords10-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords1-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords1-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords1-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords2-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords2-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords2-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords3-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords3-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords3-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords4-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords4-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords4-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords5-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords5-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords5-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords6-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords6-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords6-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords7-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords7-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords7-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords8-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords8-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords8-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords9-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords9-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords9-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords10-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords10-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_angles[openmp-incoords10-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords0-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords0-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords0-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords1-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords1-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords1-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords2-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords2-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords2-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords3-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords3-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords3-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords4-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords4-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords4-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords5-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords5-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords5-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords6-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords6-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords6-None] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords7-box0] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords7-box1] PASSED [ 50%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords7-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords8-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords8-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords8-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords9-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords9-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords9-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords10-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords10-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords10-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords11-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords11-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords11-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords12-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords12-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords12-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords13-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords13-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords13-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords14-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords14-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords14-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords15-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords15-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[serial-incoords15-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords0-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords0-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords0-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords1-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords1-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords1-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords2-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords2-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords2-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords3-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords3-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords3-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords4-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords4-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords4-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords5-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords5-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords5-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords6-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords6-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords6-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords7-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords7-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords7-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords8-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords8-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords8-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords9-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords9-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords9-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords10-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords10-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords10-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords11-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords11-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords11-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords12-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords12-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords12-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords13-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords13-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords13-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords14-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords14-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords14-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords15-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords15-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_calc_dihedrals[openmp-incoords15-None] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords0-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords0-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords1-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords1-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords2-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords2-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords3-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[serial-incoords3-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords0-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords0-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords1-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords1-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords2-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords2-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords3-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestOutputTypes::test_output_type_apply_PBC[openmp-incoords3-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[serial] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[Serial] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[SeRiAL] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[SERIAL] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[openmp] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[OpenMP] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[oPENmP] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_case_insensitivity[OPENMP] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceBackendSelection::test_wront_backend PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_used_openmpflag PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift0-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift0-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift1-box0] PASSED [ 51%] 814s 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testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift10-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift11-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift11-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift12-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift12-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift13-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift13-box1] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift14-box0] PASSED [ 51%] 814s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float32-shift14-box1] PASSED [ 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53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift54-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift55-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift55-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift56-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift56-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift57-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift57-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift58-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift58-box1] 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testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift63-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift63-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift64-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift64-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift65-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift65-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift66-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift66-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift67-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift67-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift68-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift68-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift69-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift69-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift70-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift70-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift71-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift71-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift72-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift72-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift73-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift73-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift74-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift74-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift75-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift75-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift76-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift76-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift77-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift77-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift78-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift78-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift79-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift79-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift80-box0] PASSED [ 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PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift85-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift85-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift86-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift86-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift87-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift87-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift88-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift88-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift89-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift89-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift90-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift90-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift91-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift91-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift92-box0] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift92-box1] PASSED [ 53%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift93-box0] PASSED [ 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PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift123-box1] PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift124-box0] PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_distances.py::test_minimize_vectors[float64-shift124-box1] PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_log.py::TestProgressBar::test_output PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_log.py::TestProgressBar::test_disable PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_log.py::TestProgressBar::test_verbose_disable PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_neighborsearch.py::test_search PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_neighborsearch.py::test_zero PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box0] PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box1] PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box2] PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box3] PASSED [ 54%] 815s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_pbc_box[box4] PASSED [ 54%] 816s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_badcutoff[-4-Cutoff must be positive] PASSED [ 54%] 816s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_badcutoff[100000-Cutoff 100000 too large for box] PASSED [ 54%] 816s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_ns_grid_noneighbor PASSED [ 54%] 816s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_PBC_rect PASSED [ 54%] 817s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_PBC PASSED [ 54%] 817s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_pairs PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_pair_distances PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_distances PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_search[None-results0] PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_search[box1-results1] PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_search[box2-results2] PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[None-21] PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[box1-21] PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[box2-26] PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_selfsearch[box3-33] PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_nsgrid_probe_close_to_box_boundary PASSED [ 54%] 818s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_zero_max_dist PASSED [ 54%] 819s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_around_res PASSED [ 54%] 819s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_around_overlapping PASSED [ 54%] 819s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2229_part1 PASSED [ 54%] 819s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2229_part2 PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2919 PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2345 PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_2670 PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_nsgrid.py::test_issue_3183 SKIPPED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_setcoords[None-1.0-Donot provide cutoff distance for non PBC aware calculations] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_setcoords[b1-None-Provide a cutoff distance with tree.set_coords(...)] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchfail PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_search[b0-q0-result0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_search[b1-q1-result1] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_search[b2-q2-result2] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_nopbc PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b0-2.0-result0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b1-2.0-result1] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b2-4.5-Set cutoff greater or equal to the radius.] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchpairs[b3-0.1-result3] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_ckd_searchpairs_nopbc[0.1-result0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_ckd_searchpairs_nopbc[0.3-result1] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b0-q0-result0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b1-q1-result1] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b2-q2-result2] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_pkdtree.py::test_searchtree[b3-q3-result3] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_dummy[float64] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_dummy[float32] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_regression[float64] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_qcprot.py::TestQCProt::test_regression[float32] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_absence_cutil PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_presence_cutil PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[LYS300:HZ1-residue0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[K300:HZ1-residue1] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[K300-residue2] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[LYS 300:HZ1-residue3] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue[M1:CA-residue4] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_parse_residue_ValueError PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIS-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HISA-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HISB-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HSE-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HSD-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIS1-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIS2-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HIE-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[HID-H] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[LYS-K] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[LYSH-K] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[LYN-K] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ALA-A] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASP-D] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASPH-D] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASH-D] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLU-E] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLUH-E] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLH-E] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[ASN-N] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[GLN-Q] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYS-C] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYSH-C] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYS1-C] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_3to1[CYS2-C] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[H-strings0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[K-strings1] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[A-strings2] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[D-strings3] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[E-strings4] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[N-strings5] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[Q-strings6] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_convert_aa_1to3[C-strings7] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_ValueError[XYZXYZ] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestStringFunctions::test_ValueError[\xa3] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_greedy_splitext PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[iterable0-True] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[iterable1-True] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[iterable2-True] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[iterable3-True] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[iterable4-True] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[iterable5-True] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[123-False] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[byte string-False] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::test_iterable[unicode string-False] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo.psf-None-False-foo.psf] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo.psf-pdb-False-foo.pdb] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo.psf-pdb-True-foo.psf] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo-pdb-False-foo.pdb] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_string[foo-pdb-True-foo.pdb] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestFilename::test_named_stream PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis0-y_axis0-1.5707963267948966] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis1-y_axis1-1.0471975511965976] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis2-y_axis2-1.5707963267948966] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis3-y_axis3-1.5707963267948966] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis4-y_axis4-1.0471975511965976] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis5-y_axis5-nan] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_vectors[x_axis6-y_axis6-0.0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_pi[x_axis0-y_axis0-3.141592653589793] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_pi[x_axis1-y_axis1-0.0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.16534698176788384] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.3306939635357677] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.4960409453036515] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.6613879270715354] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.8267349088394192] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[0.992081890607303] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.1574288723751869] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.3227758541430708] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.4881228359109546] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.6534698176788385] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.8188167994467224] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[1.984163781214606] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.14951076298249] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.3148577447503738] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.4802047265182576] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.6455517082861415] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.8108986900540254] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[2.9762456718219092] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_range[3.141592653589793] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm[vector0-1] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm[vector1-1.0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm[vector2-0.0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.0] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.16534698176788384] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.3306939635357677] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.4960409453036515] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.6613879270715354] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.8267349088394192] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[0.992081890607303] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.1574288723751869] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.3227758541430708] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.4881228359109546] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.6534698176788385] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.8188167994467224] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[1.984163781214606] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.14951076298249] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.3148577447503738] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.4802047265182576] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.6455517082861415] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.8108986900540254] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[2.9762456718219092] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_norm_range[3.141592653589793] PASSED [ 54%] 820s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_normal[vec10-vec20-value0] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_normal[vec11-vec21-0.0] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_angle_lower_clip PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_stp PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_dihedral PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_pdot PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestGeometryFunctions::test_pnorm PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths0] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths1] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths2] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths3] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths4] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths5] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths6] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths7] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths8] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths9] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths10] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths11] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths12] PASSED [ 54%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles0-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles1-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles2-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles3-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles4-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles5-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles6-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles7-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles8-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths10] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths11] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths12] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths13] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths14] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths15] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths16] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths17] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths18] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles9-lengths19] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths0] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths1] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths2] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths3] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths4] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths5] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths6] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths7] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths8] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths9] PASSED [ 55%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles10-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles11-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles12-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles13-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles14-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles15-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles16-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles17-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles18-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths7] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths8] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths9] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths10] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths11] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths12] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths13] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths14] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths15] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths16] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths17] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths18] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles19-lengths19] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths0] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths1] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths2] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths3] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths4] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths5] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths6] PASSED [ 56%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles20-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles21-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles22-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles23-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles24-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles25-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles26-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles27-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles28-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths3] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths4] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths5] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths6] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths7] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths8] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths9] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths10] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths11] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths12] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths13] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths14] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths15] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths16] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths17] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths18] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles29-lengths19] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths0] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths1] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths2] PASSED [ 57%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles30-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles31-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles32-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles33-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles34-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles35-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles36-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles37-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles38-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths0] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths1] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths2] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths3] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths4] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths5] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths6] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths7] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths8] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths9] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths10] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths11] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths12] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths13] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths14] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths15] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths16] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths17] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths18] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles39-lengths19] PASSED [ 58%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths0] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths1] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths2] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths3] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths4] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths5] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths6] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths7] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths8] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths9] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths10] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths11] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths12] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths13] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths14] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths15] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths16] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths17] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths18] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles40-lengths19] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths0] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths1] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths2] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths3] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths4] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths5] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths6] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths7] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths8] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths9] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths10] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths11] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths12] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths13] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths14] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths15] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths16] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths17] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths18] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles41-lengths19] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths0] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths1] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths2] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths3] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths4] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths5] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths6] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths7] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths8] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths9] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths10] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths11] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths12] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths13] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths14] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths15] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths16] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths17] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths18] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles42-lengths19] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths0] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths1] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths2] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths3] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths4] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths5] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths6] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths7] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths8] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths9] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths10] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths11] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths12] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths13] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths14] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths15] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths16] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths17] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths18] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles43-lengths19] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths0] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths1] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths2] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths3] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths4] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths5] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths6] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths7] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths8] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths9] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths10] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths11] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths12] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths13] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths14] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths15] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths16] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths17] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths18] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles44-lengths19] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths0] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths1] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths2] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths3] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths4] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths5] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths6] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths7] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths8] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths9] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths10] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths11] PASSED [ 59%] 821s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths12] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths13] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths14] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths15] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths16] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths17] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths18] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles45-lengths19] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths0] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths1] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths2] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths3] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths4] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths5] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths6] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths7] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths8] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths9] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths10] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths11] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths12] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths13] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths14] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths15] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths16] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths17] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths18] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles46-lengths19] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths0] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths1] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths2] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths3] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths4] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths5] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths6] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths7] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths8] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths9] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths10] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths11] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths12] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths13] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths14] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths15] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths16] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths17] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths18] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles47-lengths19] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths0] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths1] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths2] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths3] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths4] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths5] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths6] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths7] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths8] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths9] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths10] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths11] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths12] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths13] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths14] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths15] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths16] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths17] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths18] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles48-lengths19] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths0] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths1] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths2] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths3] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths4] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths5] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths6] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths7] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths8] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths9] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths10] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths11] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths12] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths13] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths14] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths15] PASSED [ 59%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles49-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles50-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles51-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles52-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles53-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles54-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles55-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles56-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles57-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths13] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths14] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths15] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths16] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths17] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths18] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles58-lengths19] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths0] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths1] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths2] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths3] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths4] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths5] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths6] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths7] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths8] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths9] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths10] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths11] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths12] PASSED [ 60%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles59-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles60-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles61-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles62-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles63-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles64-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles65-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles66-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles67-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths10] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths11] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths12] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths13] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths14] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths15] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths16] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths17] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths18] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles68-lengths19] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths0] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths1] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths2] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths3] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths4] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths5] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths6] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths7] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths8] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths9] PASSED [ 61%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles69-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles70-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles71-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles72-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles73-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles74-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles75-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles76-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles77-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths6] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths7] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths8] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths9] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths10] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths11] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths12] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths13] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths14] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths15] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths16] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths17] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths18] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles78-lengths19] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths0] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths1] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths2] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths3] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths4] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths5] PASSED [ 62%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles79-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles80-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles81-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles82-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors[angles83-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-60-60] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-60-90] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-90-60] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[60-90-90] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-60-60] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-60-90] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-90-60] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_right_angle_zeros[90-90-90] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[int] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[float] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[float32] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_retval[float64] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_vectors_box_cycle_exact[angles6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles0-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles1-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles2-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths3] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths4] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths5] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths6] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths7] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths8] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths9] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths10] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths11] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths12] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths13] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths14] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths15] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths16] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths17] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths18] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles3-lengths19] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths0] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths1] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths2] PASSED [ 63%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths3] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths4] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths5] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths6] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths7] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths8] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths9] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths10] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths11] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths12] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths13] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths14] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths15] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths16] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths17] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths18] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles4-lengths19] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths0] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths1] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths2] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths3] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths4] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths5] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths6] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths7] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths8] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths9] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths10] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths11] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths12] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths13] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths14] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths15] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths16] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths17] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths18] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles5-lengths19] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths0] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths1] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths2] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths3] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths4] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths5] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths6] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths7] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths8] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths9] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths10] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths11] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths12] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths13] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths14] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths15] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths16] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths17] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths18] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles6-lengths19] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths0] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths1] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths2] PASSED [ 64%] 822s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths3] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths4] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths5] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths6] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths7] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths8] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths9] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths10] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths11] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths12] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths13] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths14] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths15] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths16] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths17] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths18] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles7-lengths19] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths0] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths1] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths2] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths3] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths4] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths5] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths6] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths7] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths8] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths9] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths10] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths11] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths12] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths13] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths14] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths15] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths16] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths17] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths18] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles8-lengths19] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths0] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths1] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths2] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths3] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths4] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths5] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths6] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths7] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths8] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths9] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths10] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths11] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths12] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths13] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths14] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths15] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths16] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths17] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths18] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles9-lengths19] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths0] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths1] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths2] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths3] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths4] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths5] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths6] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths7] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths8] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths9] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths10] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths11] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths12] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths13] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths14] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths15] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths16] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths17] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths18] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles10-lengths19] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths0] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths1] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths2] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths3] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths4] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths5] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths6] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths7] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths8] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths9] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths10] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths11] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths12] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths13] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths14] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths15] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths16] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths17] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths18] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles11-lengths19] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths0] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths1] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths2] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths3] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths4] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths5] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths6] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths7] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths8] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths9] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths10] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths11] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths12] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths13] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths14] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths15] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths16] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths17] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths18] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles12-lengths19] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths0] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths1] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths2] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths3] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths4] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths5] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths6] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths7] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths8] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths9] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths10] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths11] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths12] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths13] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths14] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths15] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths16] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths17] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths18] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles13-lengths19] PASSED [ 64%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles14-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles15-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles16-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles17-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles18-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles19-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles20-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles21-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths16] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths17] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths18] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles22-lengths19] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths0] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths1] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths2] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths3] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths4] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths5] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths6] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths7] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths8] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths9] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths10] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths11] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths12] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths13] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths14] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths15] PASSED [ 65%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles23-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles24-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles25-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles26-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles27-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles28-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles29-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles30-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles31-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths13] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths14] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths15] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths16] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths17] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths18] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles32-lengths19] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths0] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths1] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths2] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths3] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths4] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths5] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths6] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths7] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths8] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths9] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths10] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths11] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths12] PASSED [ 66%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles33-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles34-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles35-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles36-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles37-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles38-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles39-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles40-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles41-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths10] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths11] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths12] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths13] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths14] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths15] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths16] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths17] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths18] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles42-lengths19] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths0] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths1] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths2] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths3] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths4] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths5] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths6] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths7] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths8] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths9] PASSED [ 67%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles43-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles44-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles45-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles46-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles47-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles48-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles49-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles50-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles51-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths6] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths7] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths8] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths9] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths10] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths11] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths12] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths13] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths14] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths15] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths16] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths17] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths18] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles52-lengths19] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths0] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths1] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths2] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths3] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths4] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths5] PASSED [ 68%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths6] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths7] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths8] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths9] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths10] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths11] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths12] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths13] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths14] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths15] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths16] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths17] PASSED [ 69%] 823s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles53-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles54-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles55-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles56-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles57-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles58-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles59-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles60-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles61-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths3] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths4] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths5] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths6] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths7] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths8] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths9] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths10] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths11] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths12] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths13] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths14] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths15] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths16] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths17] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths18] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles62-lengths19] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths0] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths1] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths2] PASSED [ 69%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles63-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles64-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles65-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles66-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles67-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles68-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles69-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles70-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles71-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths0] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths1] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths2] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths3] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths4] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths5] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths6] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths7] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths8] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths9] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths10] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths11] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths12] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths13] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths14] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths15] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths16] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths17] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths18] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles72-lengths19] PASSED [ 70%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles73-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles74-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles75-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles76-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles77-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles78-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles79-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles80-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths16] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths17] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths18] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles81-lengths19] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths0] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths1] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths2] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths3] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths4] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths5] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths6] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths7] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths8] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths9] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths10] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths11] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths12] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths13] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths14] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths15] PASSED [ 71%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles82-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_triclinic_box[angles83-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles0-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles1-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles2-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles3-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles4-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles5-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles6-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths13] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths14] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths15] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths16] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths17] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths18] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles7-lengths19] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths0] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths1] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths2] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths3] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths4] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths5] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths6] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths7] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths8] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths9] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths10] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths11] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths12] PASSED [ 72%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles8-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles9-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles10-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles11-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles12-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles13-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles14-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles15-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles16-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths10] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths11] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths12] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths13] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths14] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths15] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths16] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths17] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths18] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles17-lengths19] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths0] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths1] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths2] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths3] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths4] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths5] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths6] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths7] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths8] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths9] PASSED [ 73%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths10] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths11] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths12] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths13] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths14] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths15] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths16] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths17] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths18] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles18-lengths19] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths0] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths1] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths2] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths3] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths4] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths5] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths6] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths7] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths8] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths9] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths10] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths11] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths12] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths13] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths14] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths15] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths16] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths17] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths18] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles19-lengths19] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths0] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths1] PASSED [ 74%] 824s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles20-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles21-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles22-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles23-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles24-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles25-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles26-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths6] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths7] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths8] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths9] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths10] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths11] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths12] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths13] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths14] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths15] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths16] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths17] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths18] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles27-lengths19] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths0] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths1] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths2] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths3] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths4] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths5] PASSED [ 74%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles28-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles29-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles30-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles31-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles32-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles33-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles34-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles35-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles36-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths3] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths4] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths5] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths6] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths7] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths8] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths9] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths10] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths11] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths12] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths13] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths14] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths15] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths16] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths17] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths18] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles37-lengths19] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths0] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths1] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths2] PASSED [ 75%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles38-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles39-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles40-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles41-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles42-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles43-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles44-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles45-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles46-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths0] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths1] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths2] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths3] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths4] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths5] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths6] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths7] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths8] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths9] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths10] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths11] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths12] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths13] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths14] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths15] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths16] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths17] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths18] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles47-lengths19] PASSED [ 76%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles48-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles49-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles50-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles51-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles52-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles53-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles54-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles55-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths16] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths17] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths18] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles56-lengths19] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths0] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths1] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths2] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths3] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths4] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths5] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths6] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths7] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths8] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths9] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths10] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths11] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths12] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths13] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths14] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths15] PASSED [ 77%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles57-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles58-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles59-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles60-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles61-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles62-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles63-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles64-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles65-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths13] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths14] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths15] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths16] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths17] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths18] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles66-lengths19] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths0] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths1] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths2] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths3] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths4] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths5] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths6] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths7] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths8] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths9] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths10] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths11] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths12] PASSED [ 78%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths13] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths14] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths15] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths16] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths17] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths18] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles67-lengths19] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths0] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths1] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths2] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths3] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths4] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths5] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths6] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths7] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths8] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths9] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths10] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths11] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths12] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths13] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths14] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths15] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths16] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths17] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths18] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles68-lengths19] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths0] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths1] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths2] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths3] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths4] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths5] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths6] PASSED [ 79%] 825s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles69-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles70-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles71-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles72-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles73-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles74-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles75-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths9] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths10] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths11] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths12] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths13] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths14] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths15] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths16] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths17] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths18] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles76-lengths19] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths0] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths1] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths2] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths3] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths4] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths5] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths6] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths7] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths8] PASSED [ 79%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths9] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths10] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths11] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths12] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths13] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths14] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths15] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths16] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths17] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths18] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles77-lengths19] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths0] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths1] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths2] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths3] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths4] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths5] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths6] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths7] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths8] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths9] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths10] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths11] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths12] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths13] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths14] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths15] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths16] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths17] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths18] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles78-lengths19] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths0] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths1] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths2] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths3] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths4] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths5] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths6] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths7] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths8] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths9] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths10] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths11] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths12] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths13] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths14] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths15] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths16] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths17] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths18] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles79-lengths19] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths0] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths1] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths2] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths3] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths4] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths5] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths6] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths7] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths8] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths9] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths10] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths11] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths12] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths13] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths14] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths15] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths16] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths17] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths18] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles80-lengths19] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths0] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths1] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths2] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths3] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths4] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths5] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths6] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths7] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths8] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths9] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths10] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths11] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths12] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths13] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths14] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths15] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths16] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths17] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths18] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles81-lengths19] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths0] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths1] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths2] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths3] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths4] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths5] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths6] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths7] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths8] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths9] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths10] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths11] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths12] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths13] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths14] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths15] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths16] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths17] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths18] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles82-lengths19] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths0] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths1] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths2] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths3] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths4] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths5] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths6] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths7] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths8] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths9] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths10] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths11] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths12] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths13] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths14] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths15] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths16] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths17] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths18] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_box_volume[angles83-lengths19] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape0] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape1] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape2] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMatrixOperations::test_sarrus_det_wrong_shape[shape3] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_return_value PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_single_atom_no_bonds PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_empty_ag PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_scrambled_ag PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_out_of_place PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_double_precision_box PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_no_bonds PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_zero_box_size PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_wrong_reference_atom PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_impossible_solve PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_1 PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_2 PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_3 PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_solve_4 PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_double_frag_short_bonds PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_make_whole_triclinic PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_make_whole_fullerene PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestMakeWhole::test_make_whole_multiple_molecules PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val1_lookup PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val1_inject PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val2_lookup PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val2_inject PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val3_set PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val3_del PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val4_args PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val5_kwargs PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestCachedDecorator::test_val6_universe_validation PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_float[0.45-0.45] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_float[.45-0.45] PASSED [ 80%] 826s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_float[a.b-a.b] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_map[input0-output0] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestConvFloat::test_map[input1-output1] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_keys PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_ValueError PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_usage[0.1-4.0-5.0-10-0.1-4.0-5.0] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestFixedwidthBins::test_usage[0.4-4.0-5.0-3-0.4-3.9-5.1] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[None-None] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[mass-result1] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[weights2-result2] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[weights3-result3] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_ok[weights4-result4] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[42] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[geometry] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights2] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights3] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights4] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights5] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_check_weights_raises_ValueError[weights6] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[CHAIN] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[CONFIG] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[CRD] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[DATA] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[DCD] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[DMS] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[GMS] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[GRO] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[HISTORY] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[INPCRD] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[LAMMPS] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[MDCRD] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[MMTF] PASSED [ 80%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[MOL2] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[NC] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[NCDF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PDB] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PDBQT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PRMTOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PQR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[PSF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[RESTRT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TPR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TRJ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TRR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XML] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XPDB] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XTC] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[XYZ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[TRZ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[chain] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[config] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[crd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[data] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[dcd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[dms] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[gms] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[gro] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[history] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[inpcrd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[lammps] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[mdcrd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[mmtf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[mol2] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[nc] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[ncdf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[pdb] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[pdbqt] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[prmtop] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[pqr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[psf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[restrt] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[top] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[tpr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[trj] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[trr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xml] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xpdb] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xtc] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[xyz] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_extention[trz] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[CHAIN] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[CONFIG] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[CRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[DATA] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[DCD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[DMS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[GMS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[GRO] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[HISTORY] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[INPCRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[LAMMPS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[MDCRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[MMTF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[MOL2] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[NC] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[NCDF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PDB] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PDBQT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PRMTOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PQR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[PSF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[RESTRT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TPR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TRJ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TRR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XML] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XPDB] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XTC] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[XYZ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[TRZ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[chain] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[config] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[crd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[data] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[dcd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[dms] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[gms] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[gro] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[history] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[inpcrd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[lammps] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[mdcrd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[mmtf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[mol2] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[nc] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[ncdf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[pdb] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[pdbqt] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[prmtop] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[pqr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[psf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[restrt] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[top] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[tpr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[trj] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[trr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xml] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xpdb] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xtc] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[xyz] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed_without_compression_extention[trz] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-CHAIN] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-CONFIG] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-CRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-DATA] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-DCD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-DMS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-GMS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-GRO] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-HISTORY] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-INPCRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-LAMMPS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-MDCRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-MMTF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-MOL2] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-NC] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-NCDF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PDB] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PDBQT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PRMTOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PQR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-PSF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-RESTRT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TPR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TRJ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TRR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XML] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XPDB] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XTC] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-XYZ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-TRZ] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-chain] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-config] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-crd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-data] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-dcd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-dms] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-gms] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-gro] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-history] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-inpcrd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-lammps] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-mdcrd] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-mmtf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-mol2] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-nc] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-ncdf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-pdb] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-pdbqt] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-prmtop] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-pqr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-psf] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-restrt] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-top] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-tpr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-trj] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-trr] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xml] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xpdb] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xtc] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-xyz] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.bz2-trz] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-CHAIN] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-CONFIG] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-CRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-DATA] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-DCD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-DMS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-GMS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-GRO] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-HISTORY] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-INPCRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-LAMMPS] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-MDCRD] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-MMTF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-MOL2] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-NC] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-NCDF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PDB] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PDBQT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PRMTOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PQR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-PSF] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-RESTRT] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TOP] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TPR] PASSED [ 81%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TRJ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TRR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XML] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XPDB] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XTC] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-XYZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-TRZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-chain] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-config] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-crd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-data] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-dcd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-dms] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-gms] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-gro] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-history] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-inpcrd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-lammps] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-mdcrd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-mmtf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-mol2] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-nc] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-ncdf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-pdb] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-pdbqt] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-prmtop] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-pqr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-psf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-restrt] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-top] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-tpr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-trj] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-trr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xml] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xpdb] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xtc] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-xyz] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_compressed[.gz-trz] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[CHAIN] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[CONFIG] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[CRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[DATA] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[DCD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[DMS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[GMS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[GRO] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[HISTORY] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[INPCRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[LAMMPS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[MDCRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[MMTF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[MOL2] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[NC] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[NCDF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PDB] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PDBQT] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PRMTOP] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PQR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[PSF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[RESTRT] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TOP] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TPR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TRJ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TRR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XML] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XPDB] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XTC] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[XYZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[TRZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[chain] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[config] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[crd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[data] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[dcd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[dms] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[gms] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[gro] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[history] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[inpcrd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[lammps] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[mdcrd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[mmtf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[mol2] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[nc] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[ncdf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[pdb] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[pdbqt] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[prmtop] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[pqr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[psf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[restrt] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[top] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[tpr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[trj] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[trr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xml] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xpdb] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xtc] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[xyz] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format[trz] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-CHAIN] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-CONFIG] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-CRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-DATA] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-DCD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-DMS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-GMS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-GRO] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-HISTORY] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-INPCRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-LAMMPS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-MDCRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-MMTF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-MOL2] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-NC] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-NCDF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PDB] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PDBQT] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PRMTOP] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PQR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-PSF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-RESTRT] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TOP] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TPR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TRJ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TRR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XML] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XPDB] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XTC] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-XYZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-TRZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-chain] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-config] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-crd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-data] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-dcd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-dms] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-gms] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-gro] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-history] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-inpcrd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-lammps] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-mdcrd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-mmtf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-mol2] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-nc] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-ncdf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-pdb] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-pdbqt] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-prmtop] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-pqr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-psf] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-restrt] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-top] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-tpr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-trj] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-trr] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xml] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xpdb] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xtc] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-xyz] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.bz2-trz] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-CHAIN] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-CONFIG] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-CRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-DATA] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-DCD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-DMS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-GMS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-GRO] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-HISTORY] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-INPCRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-LAMMPS] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-MDCRD] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-MMTF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-MOL2] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-NC] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-NCDF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PDB] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PDBQT] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PRMTOP] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PQR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-PSF] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-RESTRT] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TOP] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TPR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TRJ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TRR] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XML] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XPDB] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XTC] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-XYZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-TRZ] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-chain] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-config] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-crd] PASSED [ 82%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-data] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-dcd] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-dms] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-gms] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-gro] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-history] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-inpcrd] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-lammps] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-mdcrd] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-mmtf] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-mol2] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-nc] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-ncdf] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-pdb] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-pdbqt] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-prmtop] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-pqr] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-psf] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-restrt] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-top] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-tpr] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-trj] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-trr] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xml] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xpdb] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xtc] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-xyz] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_compressed[.gz-trz] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[CHAIN-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[CONFIG-ConfigParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[CRD-CRDParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[DATA-DATAParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[DCD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[DMS-DMSParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[GMS-GMSParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[GRO-GROParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[HISTORY-HistoryParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[INPCRD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[LAMMPS-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[MDCRD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[MMTF-MMTFParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[MOL2-MOL2Parser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[NC-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[NCDF-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PDB-PDBParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PDBQT-PDBQTParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PRMTOP-TOPParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PQR-PQRParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[PSF-PSFParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[RESTRT-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TOP-TOPParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TPR-TPRParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TRJ-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TRR-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XML-HoomdXMLParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XPDB-ExtendedPDBParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XTC-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[XYZ-XYZParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser[TRZ-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-CHAIN-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-CONFIG-ConfigParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-CRD-CRDParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-DATA-DATAParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-DCD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-DMS-DMSParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-GMS-GMSParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-GRO-GROParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-HISTORY-HistoryParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-INPCRD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-LAMMPS-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-MDCRD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-MMTF-MMTFParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-MOL2-MOL2Parser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-NC-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-NCDF-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PDB-PDBParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PDBQT-PDBQTParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PRMTOP-TOPParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PQR-PQRParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-PSF-PSFParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-RESTRT-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TOP-TOPParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TPR-TPRParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TRJ-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TRR-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XML-HoomdXMLParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XPDB-ExtendedPDBParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XTC-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-XYZ-XYZParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.bz2-TRZ-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-CHAIN-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-CONFIG-ConfigParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-CRD-CRDParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-DATA-DATAParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-DCD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-DMS-DMSParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-GMS-GMSParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-GRO-GROParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-HISTORY-HistoryParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-INPCRD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-LAMMPS-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-MDCRD-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-MMTF-MMTFParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-MOL2-MOL2Parser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-NC-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-NCDF-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PDB-PDBParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PDBQT-PDBQTParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PRMTOP-TOPParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PQR-PQRParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-PSF-PSFParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-RESTRT-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TOP-TOPParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TPR-TPRParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TRJ-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TRR-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XML-HoomdXMLParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XPDB-ExtendedPDBParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XTC-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-XYZ-XYZParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_compressed[.gz-TRZ-MinimalParser] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_parser_invalid[extention0] SKIPPED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[CHAIN-ChainReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[CONFIG-ConfigReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[CRD-CRDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[DATA-DATAReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[DCD-DCDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[DMS-DMSReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[GMS-GMSReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[GRO-GROReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[HISTORY-HistoryReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[INPCRD-INPReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[LAMMPS-DCDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[MDCRD-TRJReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[MMTF-MMTFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[MOL2-MOL2Reader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[NC-NCDFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[NCDF-NCDFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[PDB-PDBReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[PDBQT-PDBQTReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[PQR-PQRReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[RESTRT-INPReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[TRJ-TRJReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[TRR-TRRReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[XPDB-ExtendedPDBReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[XTC-XTCReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[XYZ-XYZReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader[TRZ-TRZReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-CHAIN-ChainReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-CONFIG-ConfigReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-CRD-CRDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-DATA-DATAReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-DCD-DCDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-DMS-DMSReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-GMS-GMSReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-GRO-GROReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-HISTORY-HistoryReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-INPCRD-INPReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-LAMMPS-DCDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-MDCRD-TRJReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-MMTF-MMTFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-MOL2-MOL2Reader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-NC-NCDFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-NCDF-NCDFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-PDB-PDBReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-PDBQT-PDBQTReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-PQR-PQRReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-RESTRT-INPReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-TRJ-TRJReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-TRR-TRRReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-XPDB-ExtendedPDBReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-XTC-XTCReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-XYZ-XYZReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.bz2-TRZ-TRZReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-CHAIN-ChainReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-CONFIG-ConfigReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-CRD-CRDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-DATA-DATAReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-DCD-DCDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-DMS-DMSReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-GMS-GMSReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-GRO-GROReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-HISTORY-HistoryReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-INPCRD-INPReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-LAMMPS-DCDReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-MDCRD-TRJReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-MMTF-MMTFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-MOL2-MOL2Reader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-NC-NCDFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-NCDF-NCDFReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-PDB-PDBReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-PDBQT-PDBQTReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-PQR-PQRReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-RESTRT-INPReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-TRJ-TRJReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-TRR-TRRReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-XPDB-ExtendedPDBReader] PASSED [ 83%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-XTC-XTCReader] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-XYZ-XYZReader] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_compressed[.gz-TRZ-TRZReader] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention0] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention1] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention2] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention3] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_get_reader_invalid[extention4] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_check_compressed_format_TypeError PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_format_from_filename_TypeError PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_guess_format_stream_ValueError PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGuessFormat::test_from_ndarray PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestUniqueRows::test_unique_rows_2 PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestUniqueRows::test_unique_rows_3 PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestUniqueRows::test_unique_rows_with_view PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_no_filename_argument PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_precedence PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_missing_extension PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_extension_empty_string PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_file_no_extension PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_wrong_format PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_compressed_extension PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_compressed_extension_fail PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_non_string_filename PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_failure PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_nonsense PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[CRD-CRDWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[DATA-DATAWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[DCD-DCDWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[GRO-GROWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[LAMMPS-DCDWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[MOL2-MOL2Writer] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[NCDF-NCDFWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[NULL-NullWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[PDBQT-PDBQTWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[PQR-PQRWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[TRR-TRRWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[XTC-XTCWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[XYZ-XYZWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe[TRZ-TRZWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_singleframe_fails[format0] SKIPPED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[DCD-DCDWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[LAMMPS-DCDWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[MOL2-MOL2Writer] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[NCDF-NCDFWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[NULL-NullWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[TRR-TRRWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[XTC-XTCWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[XYZ-XYZWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe[TRZ-TRZWriter] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[CRD] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[DATA] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[GRO] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[PDBQT] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_multiframe_fails[PQR] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestGetWriterFor::test_get_writer_for_pdb PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_1 PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_2 PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_3 PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_4 PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestBlocksOf::test_blocks_of_ValueError PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_group_same_or_consecutive_integers[arr0-answer0] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_group_same_or_consecutive_integers[arr1-answer1] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::test_group_same_or_consecutive_integers[arr2-answer2] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getitem PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getitem_KeyError PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_setitem PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_delitem PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_delitem_AttributeError PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_setattr PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getattr PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_getattr_AttributeError PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_delattr PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_eq PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_len PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestNamespace::test_iter PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a0-4] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a1-34] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a2-234] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a3-1234] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestTruncateInteger::test_ltruncate_int[a4-1234] PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestFlattenDict::test_flatten_dict PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestStaticVariables::test_static_variables PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_once_outer PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warned_state_restored_on_failure PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_once_inner PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_multiple_references PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_unnamed PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_warn_if_not_unique_fails_for_non_groupmethods PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestWarnIfNotUnique::test_filter_duplicate_with_userwarning PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_default_options PASSED [ 84%] 827s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-True-True] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-True-False] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-False-True] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-True-False-False] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-True-True] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-True-False] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-False-True] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-True-False-False-False] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-True-True] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-True-False] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-False-True] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-True-False-False] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-True-True] PASSED [ 84%] 828s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-True-False] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-False-True] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-True-False-False-False-False] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-True-True] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-True-False] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-False-True] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-True-False-False] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-True-True] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-True-False] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-False-True] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-True-False-False-False] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-True-True] PASSED [ 84%] 829s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-True-False] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-False-True] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-True-False-False] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-True-True] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-True-False] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-False-True] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[True-False-False-False-False-False] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-True-True] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-True-False] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-False-True] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-True-False-False] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-True-True] PASSED [ 84%] 830s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-True-False] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-False-True] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-True-False-False-False] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-True-True] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-True-False] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-False-True] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-True-False-False] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-True-True] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-True-False] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-False-True] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-True-False-False-False-False] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-True-True] PASSED [ 84%] 831s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-True-False] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-False-True] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-True-False-False] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-True-True] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-True-False] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-False-True] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-True-False-False-False] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-True-True] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-True-False] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-False-True] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-True-False-False] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-True-True] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-True-False] PASSED [ 84%] 832s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-False-True] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup[False-False-False-False-False-False] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup_not_allowed PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup_not_allowed_default PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_enforce_copy PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_allow_single PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_convert_single PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_reduce_result_if_single PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_no_check_lengths_match PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_atomgroup_mismatched_lengths PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_invalid_input PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_usage_with_kwargs PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_wrong_func_call PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckCoords::test_wrong_decorator_usage PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-None-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-None-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-Multiverse-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-None-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-None-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-None-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-Multiverse-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-99.0.0-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-None-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-None-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-Multiverse-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[None-2099-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-None-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-None-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-Multiverse-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-None-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-None-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-None-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-Multiverse-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-99.0.0-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-None-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-None-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-Multiverse-None] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate[use the new stuff-2099-Multiverse-MDAnalysis.Universe] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_deprecate_missing_release_ValueError PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_set_function_name PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[one line text] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[ one line with leading space] PASSED [ 84%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[multiline\n\n with some\n leading space] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_dedent_docstring[ multiline\n\n with all\n leading space] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box0] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box1] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box2] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box3] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box4] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box5] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box6] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_ortho[box7] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_None PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box0] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box1] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box2] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box3] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box4] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box5] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box6] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_tri_vecs[box7] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_wrong_data PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestCheckBox::test_check_box_wrong_shape PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestStoreInitArguments::test_store_arguments_default PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::TestStoreInitArguments::test_store_arguments_withkwargs PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_which PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_is_installed[math-True] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_is_installed[sys-True] PASSED [ 85%] 833s testsuite/MDAnalysisTests/lib/test_util.py::test_is_installed[some_weird_module_name-False] PASSED [ 85%] 833s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u0] FAILED [ 85%] 833s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u1] FAILED [ 85%] 833s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u2] FAILED [ 85%] 833s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u3] FAILED [ 85%] 834s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u4] FAILED [ 85%] 834s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u5] FAILED [ 85%] 834s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u6] FAILED [ 85%] 834s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u7] FAILED [ 85%] 834s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u8] FAILED [ 85%] 834s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u9] FAILED [ 85%] 835s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u10] FAILED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u11] FAILED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u12] FAILED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u13] FAILED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u14] FAILED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_universe_unpickle_in_new_process FAILED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_creating_multiple_universe_without_offset FAILED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader0] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader1] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader2] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader3] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader4] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader5] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader6] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader7] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader8] PASSED [ 85%] 839s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader9] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader10] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader11] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader12] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader13] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader14] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader15] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader16] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader17] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader18] PASSED [ 85%] 840s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader19] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader20] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader21] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader22] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader23] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader24] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader25] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader26] PASSED [ 85%] 841s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader27] PASSED [ 85%] 842s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader28] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader29] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_readers_pickle[ref_reader30] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_analysis_pickle PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_fit_translation_pickle[u0] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_fit_rot_trans_pickle[u0] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_PositionAverager_pickle[u0] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_rotateby_pickle[u0] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_translate_pickle[u0] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_center_in_box_pickle[u0] PASSED [ 85%] 845s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_wrap_pickle[u0] PASSED [ 85%] 846s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py::test_add_unwrap_pickle[u0] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_Universe PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_Writer PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_AtomGroup PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_ResidueGroup PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_SegmentGroup PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.topology] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.topology.tpr] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.selections] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.core] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.coordinates] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.formats] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.formats.src] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.formats.include] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.src.transformations] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.libmdanalysis] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.lib.include] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.tests] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.guesser] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore.dimensionality_reduction] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.encore.clustering] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.data] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hydrogenbonds] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.hbonds] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.dssp] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.analysis.legacy] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.visualization] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.auxiliary] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.transformations] PASSED [ 85%] 846s testsuite/MDAnalysisTests/test_api.py::test_all_import[.converters] PASSED [ 85%] 848s testsuite/MDAnalysisTests/topology/test_altloc.py::test_atomgroups PASSED [ 85%] 850s testsuite/MDAnalysisTests/topology/test_altloc.py::test_bonds PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_altloc.py::test_write_read PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_guessed_masses PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_crd.py::TestCRDParser::test_guessed_types PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_guesssed_masses PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_guessed_types PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryParser::test_names PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_guesssed_masses PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_guessed_types PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigParser::test_names PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigMinimal::test_dlp_names PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPConfigOrder::test_dlp_names PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryMinimal::test_dlp_names PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryOrder::test_dlp_names PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_output PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_mandatory_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_expected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_no_unexpected_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_tt_size PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_creates_universe PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_guessed_attributes PASSED [ 85%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::TestDLPHistoryClassic::test_dlp_names PASSED [ 86%] 852s testsuite/MDAnalysisTests/topology/test_dlpoly.py::test_HISTORY_EOFError PASSED [ 86%] 852s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_output PASSED [ 86%] 852s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_mandatory_attributes PASSED [ 86%] 852s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_expected_attributes PASSED [ 86%] 852s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_no_unexpected_attributes PASSED [ 86%] 852s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_size PASSED [ 86%] 852s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_tt_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_creates_universe PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_guessed_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_number_of_bonds PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_atomsels PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParser::test_guessed_types PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_output PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_mandatory_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_expected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_no_unexpected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_tt_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_creates_universe PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_guessed_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_number_of_bonds PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_guessed_types PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_dms.py::TestDMSParserNoSegid::test_atomsels PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_output PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_mandatory_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_expected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_no_unexpected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_tt_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_creates_universe PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_guessed_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_names PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_guessed_types PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_guessed_masses PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_fhiaims.py::TestFHIAIMS::test_elements PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_output PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_mandatory_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_expected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_no_unexpected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_tt_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_creates_universe PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_guessed_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_names PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_types PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_guessed_masses PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMOPT::test_guessed_types PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_output PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_mandatory_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_expected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_no_unexpected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_tt_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_creates_universe PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_guessed_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_names PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSSYMOPT::test_types PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_output PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_mandatory_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_expected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_no_unexpected_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_tt_size PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_creates_universe PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_guessed_attributes PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_names PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_types PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_guessed_masses PASSED [ 86%] 853s testsuite/MDAnalysisTests/topology/test_gms.py::TestGMSASYMSURF::test_guessed_types PASSED [ 86%] 854s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_output PASSED [ 86%] 854s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_mandatory_attributes PASSED [ 86%] 854s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_expected_attributes PASSED [ 86%] 854s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_no_unexpected_attributes PASSED [ 86%] 854s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_size PASSED [ 86%] 854s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_tt_size PASSED [ 86%] 854s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_creates_universe PASSED [ 86%] 855s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_guessed_attributes PASSED [ 86%] 855s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_attr_size PASSED [ 86%] 855s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_guessed_masses PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROParser::test_guessed_types PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gro.py::TestGROWideBox::test_atoms PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gro.py::test_parse_empty_atom_IOerror PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gro.py::test_parse_missing_atomname_IOerror PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gro.py::TestGroResidWrapping::test_wrapping_resids[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/residwrap.gro-resids0] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gro.py::TestGroResidWrapping::test_wrapping_resids[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/residwrap_0base.gro-resids1] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gro.py::test_sameresid_diffresname PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_output PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_mandatory_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_expected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_no_unexpected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_tt_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_creates_universe PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_guessed_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_attr_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_atoms PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_bonds PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_angles PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_dihedrals PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParser::test_impropers PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_output PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_mandatory_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_expected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_no_unexpected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_tt_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_creates_universe PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_guessed_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_attr_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_atoms PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_bonds PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_angles PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_dihedrals PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_impropers PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_bonds_identity PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_angles_identity PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_gsd.py::TestGSDParserBonds::test_dihedrals_identity PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_masses PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_masses_warn PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_masses_miss PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_get_atom_mass[H-1.008] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_get_atom_mass[XYZ-0.0] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessMasses::test_guess_atom_mass PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_types PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element_empty PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element_singledigit PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_atom_element_1H PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[AO5*-O] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[F--F] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[HB1-H] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[OC2-O] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[1he2-H] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[3hg2-H] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[OH--O] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[HO-H] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[he-H] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[zn-ZN] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[Ca2+-CA] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[CA-C] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[N0A-N] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[C0U-C] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[C0S-C] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[Na+-NA] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestGuessTypes::test_guess_element_from_name[Cu2+-CU] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_charge PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_Error PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_impropers PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_water PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_adk PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_bonds_peptide PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[c1ccccc1] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[C1=CC=CC=C1] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[CCO] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[c1ccccc1Cc1ccccc1] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_aromaticities[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[c1ccccc1] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[C1=CC=CC=C1] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[CCO] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[c1ccccc1Cc1ccccc1] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::test_guess_gasteiger_charges[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[guess_masses-arg0] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[validate_atom_types-arg1] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[guess_types-arg2] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[guess_atom_type-CA] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[guess_atom_element-CA] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[get_atom_mass-C] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[guess_atom_mass-CA] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_mass_type_elements_deprecations[guess_atom_charge-CA] PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_bonds_deprecations PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_angles_dihedral_deprecations PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_guessers.py::TestDeprecationWarning::test_rdkit_guessers_deprecations SKIPPED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_output PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_mandatory_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_expected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_no_unexpected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_tt_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_creates_universe PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_guessed_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_attr_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_bonds PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_angles PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_dihedrals PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_impropers PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_bonds_identity PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_angles_identity PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_dihedrals_identity PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_read_masses PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_hoomdxml.py::TestHoomdXMLParser::test_read_charges PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_output PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_mandatory_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_expected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_no_unexpected_attributes PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_tt_size PASSED [ 86%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_creates_universe PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_guessed_attributes PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_total_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_total_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_total_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_total_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_atom_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_values PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_bonds_type PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_atom_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_values PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_angles_type PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_atom_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_multiple_types PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_values PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_dihedrals_type PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_atom_counts PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_values PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITP::test_impropers_type PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_output PASSED [ 87%] 856s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoMass::test_mass_guess PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_charge_parse PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPAtomtypes::test_mass_parse_or_guess PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_charge_parse PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPCharges::test_masses_are_read PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_bonds_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_angles_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_impropers_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_no_extra_angles PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_bonds_atom_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_atom_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestDifferentDirectivesITP::test_dihedrals_identity PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_bonds_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_angles_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_dihedrals_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_impropers_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_whether_settles_types PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_bonds_values PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_defines PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPNoKeywords::test_guessed_masses PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_bonds_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_angles_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_dihedrals_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_impropers_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_bonds_values PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_guessed_masses PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_whether_settles_types PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_angles_values PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_defines PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestITPKeywords::test_kwargs_overrides_defines PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_bonds_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_angles_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_dihedrals_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_impropers_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestNestedIfs::test_heavy_atom PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_mandatory_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_expected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_no_unexpected_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_tt_size PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_bonds_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_angles_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_dihedrals_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_impropers_total_counts PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_creates_universe PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_guessed_attributes PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestReadTop::test_sequential PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestErrors::test_no_include PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestErrors::test_missing_endif PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relstring PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relpath PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::TestRelativePath::test_relative_path PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::test_missing_elements_no_attribute PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::test_elements_deprecation_warning PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_itp.py::test_elements_nodeprecation_warning PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_output PASSED [ 87%] 857s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_mandatory_attributes PASSED [ 87%] 858s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_expected_attributes PASSED [ 87%] 858s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_no_unexpected_attributes PASSED [ 87%] 858s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_size PASSED [ 87%] 858s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_tt_size PASSED [ 87%] 858s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_atom_types PASSED [ 87%] 859s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_bonds PASSED [ 87%] 859s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_bond_member PASSED [ 87%] 859s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_angles PASSED [ 87%] 859s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_angle_member PASSED [ 87%] 859s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_dihedrals PASSED [ 87%] 860s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_dihedral_member PASSED [ 87%] 860s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_n_impropers PASSED [ 87%] 860s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_improper_member PASSED [ 87%] 860s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_creates_universe PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsData::test_guessed_attributes PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_atom_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_atom_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_bond_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_bond_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_angles[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_angles[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_angle_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_angle_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_dihedrals[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_dihedrals[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_dihedral_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_dihedral_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_impropers[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_n_impropers[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_improper_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_improper_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSCNT::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_atom_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_atom_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 87%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_bond_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_bond_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_angles[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_angles[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_angle_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_angle_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_dihedrals[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_dihedrals[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_dihedral_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_dihedral_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_impropers[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_n_impropers[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_improper_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_improper_member[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSHYD::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data2] PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_output PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_mandatory_attributes PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_expected_attributes PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_no_unexpected_attributes PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_size PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_tt_size PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_atom_types PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_bonds PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_bond_member PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_angles PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_angle_member PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_dihedrals PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_dihedral_member PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_n_impropers PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_improper_member PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_creates_universe PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_guessed_attributes PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_atom_ids PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLAMMPSDeletedAtoms::test_traj PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_output PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_mandatory_attributes PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_expected_attributes PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_no_unexpected_attributes PASSED [ 88%] 861s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_tt_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_atom_types PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_bonds PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_bond_member PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_angles PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_angle_member PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_dihedrals PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_dihedral_member PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_n_impropers PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_improper_member PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_creates_universe PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestLammpsDataPairIJ::test_guessed_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_noresid PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_noresid_failure PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_interpret_atom_style PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::test_interpret_atom_style_missing PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_output PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_mandatory_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_expected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_no_unexpected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_tt_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_creates_universe PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_masses_warning PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_guessed_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_id_ordering PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_guessed_masses PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParser::test_guessed_types PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_output PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_mandatory_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_expected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_no_unexpected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_tt_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_creates_universe PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_masses_warning PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_guessed_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_id_ordering PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_guessed_masses PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_lammpsdata.py::TestDumpParserLong::test_guessed_types PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/test.inpcrd-5] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd-12421] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/bala.ncdf-2661] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.trr-47681] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc-47681] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser[filename6-10] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/test.inpcrd-5] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/ifabp_apo_100mM.dcd-12421] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/bala.ncdf-2661] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.trr-47681] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc-47681] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_universe_with_minimal[filename6-10] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser_fail[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.mdcrd-252] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser_fail[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/bala.trj-2661] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_parser_fail[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trzfile.trz-8184] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_n_atoms_kwarg[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.mdcrd-252] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_n_atoms_kwarg[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/bala.trj-2661] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_minimal_n_atoms_kwarg[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trzfile.trz-8184] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array0-fac] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array1-fca] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array2-afc] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array3-acf] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array4-cfa] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_minimal_parser[array5-caf] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array0-fac] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array1-fca] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array2-afc] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array3-acf] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array4-cfa] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_minimal.py::test_memory_universe[array5-caf] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_output PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_mandatory_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_expected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_no_unexpected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_tt_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_creates_universe PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser::test_guessed_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_output PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_mandatory_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_expected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_no_unexpected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_tt_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_creates_universe PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFParser_gz::test_guessed_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_output PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_mandatory_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_expected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_no_unexpected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_tt_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_creates_universe PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny::test_guessed_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_output PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_mandatory_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_expected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_no_unexpected_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_tt_size PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_creates_universe PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFSkinny2::test_guessed_attributes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_bonds PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_ids PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_names PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_resnames PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_segids PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_resids PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_occupancies PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_bfactors PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_types PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_models PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_icodes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_altlocs PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverse::test_guessed_masses PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_bonds PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_ids PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_names PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_resnames PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_segids PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_resids PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_occupancies PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_bfactors PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_types PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_models PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_icodes PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_altlocs PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFUniverseFromDecoder::test_guessed_masses PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverse::test_models PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverse::test_universe_models PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverse::test_guessed_masses PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverseFromDecoder::test_models PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverseFromDecoder::test_universe_models PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestMMTFgzUniverseFromDecoder::test_guessed_masses PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_selection PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_2 PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_3 PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_4 PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mmtf.py::TestSelectModels::test_model_multiple_5 PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 88%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_attr_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_attr_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::TestMOL2Base::test_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecules.mol2] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_bond_orders PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_elements PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_elements_selection PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_wrong_elements_warnings PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_all_wrong_elements_warnings PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_all_elements PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_wo_optional_columns PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_partial_optional_columns PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_mol2_wo_required_columns PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_mol2_no_charges PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_unformat PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_mol2.py::test_guessed_masses PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[A0000-100000] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[MEGAN-20929695] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[J0NNY-15247214] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[DREW6-6417862] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ST3V3-31691119] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ADA8M-719798] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[a0000-43770016] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[megan-64599711] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[j0nny-58917230] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[drew6-50087878] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[st3v3-75361135] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ada8m-44389814] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 6-6] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 24-24] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 645-645] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[ 4951-4951] PASSED [ 89%] 862s testsuite/MDAnalysisTests/topology/test_pdb.py::test_hy36decode[10267-10267] PASSED [ 89%] 863s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_output PASSED [ 89%] 863s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_mandatory_attributes PASSED [ 89%] 863s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_expected_attributes PASSED [ 89%] 863s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_no_unexpected_attributes PASSED [ 89%] 864s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_size PASSED [ 89%] 864s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_tt_size PASSED [ 89%] 864s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_creates_universe PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParser::test_guessed_attributes PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_output PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_mandatory_attributes PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_expected_attributes PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_no_unexpected_attributes PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_size PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_tt_size PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_creates_universe PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBParserSegids::test_guessed_attributes PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBConect::test_conect_parser PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBConect::test_conect_parser_runtime PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::TestPDBConect::test_conect_topo_parser PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_conect2ter PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_single_conect PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_new_chainid_new_res PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_sameresid_diffresname PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_record_types PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_no_resid PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_hex PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_metals PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_elements PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_missing_elements_noattribute PASSED [ 89%] 865s testsuite/MDAnalysisTests/topology/test_pdb.py::test_wrong_elements_warnings PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdb.py::test_guessed_masses_and_types_values PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdb.py::test_nobonds_error PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_charges PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_bad_charges[REMARK Invalid charge assignment - no sign for MG2+\nHETATM 1 CU CU A 1 03.000 00.000 00.000 1.00 00.00 CU2+\nHETATM 2 FE FE A 2 00.000 03.000 00.000 1.00 00.00 Fe2+\nHETATM 3 Mg Mg A 3 03.000 03.000 03.000 1.00 00.00 MG2\nEND\n-2] PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdb.py::test_PDB_bad_charges[REMARK Invalid charge format for MG2+\nHETATM 1 CU CU A 1 03.000 00.000 00.000 1.00 00.00 CU2+\nHETATM 2 FE FE A 2 00.000 03.000 00.000 1.00 00.00 Fe2+\nHETATM 3 Mg Mg A 3 03.000 03.000 03.000 1.00 00.00 MG+2\nEND\n-\\+2] PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_output PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_mandatory_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_expected_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_no_unexpected_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_tt_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_creates_universe PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_guessed_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::TestPDBQT::test_guessed_masses PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pdbqt.py::test_footnote PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_output PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_mandatory_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_expected_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_no_unexpected_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_tt_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_creates_universe PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_guessed_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_attr_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_guessed_masses PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser::test_guessed_types PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_output PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_mandatory_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_expected_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_no_unexpected_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_tt_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_creates_universe PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_guessed_attributes PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_attr_size PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_guessed_masses PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::TestPQRParser2::test_guessed_types PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::test_record_types PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_pqr.py::test_gromacs_flavour PASSED [ 89%] 866s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_output[uncompressed] PASSED [ 89%] 867s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_output[bz2] PASSED [ 89%] 867s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_mandatory_attributes[uncompressed] PASSED [ 89%] 867s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_mandatory_attributes[bz2] PASSED [ 89%] 867s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_expected_attributes[uncompressed] PASSED [ 89%] 867s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_expected_attributes[bz2] PASSED [ 89%] 868s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_no_unexpected_attributes[uncompressed] PASSED [ 89%] 868s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_no_unexpected_attributes[bz2] PASSED [ 89%] 868s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_size[uncompressed] PASSED [ 89%] 868s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_size[bz2] PASSED [ 89%] 868s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_tt_size[uncompressed] PASSED [ 89%] 869s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_tt_size[bz2] PASSED [ 89%] 869s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_creates_universe[uncompressed] PASSED [ 89%] 869s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_creates_universe[bz2] PASSED [ 89%] 869s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_guessed_attributes[uncompressed] PASSED [ 89%] 870s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_guessed_attributes[bz2] PASSED [ 89%] 870s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_total_counts[uncompressed] PASSED [ 89%] 870s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_total_counts[bz2] PASSED [ 89%] 870s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_atom_counts[uncompressed] PASSED [ 89%] 870s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_atom_counts[bz2] PASSED [ 89%] 871s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_identity[uncompressed] PASSED [ 89%] 871s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_bonds_identity[bz2] PASSED [ 89%] 871s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_total_counts[uncompressed] PASSED [ 89%] 871s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_total_counts[bz2] PASSED [ 89%] 871s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_atom_counts[uncompressed] PASSED [ 89%] 872s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_atom_counts[bz2] PASSED [ 89%] 872s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_identity[uncompressed] PASSED [ 89%] 872s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_angles_identity[bz2] PASSED [ 89%] 872s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_total_counts[uncompressed] PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_total_counts[bz2] PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_atom_counts[uncompressed] PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_atom_counts[bz2] PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_identity[uncompressed] PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser::test_dihedrals_identity[bz2] PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_output PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_mandatory_attributes PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_expected_attributes PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_no_unexpected_attributes PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_size PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_tt_size PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_creates_universe PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestNAMDPSFParser::test_guessed_attributes PASSED [ 89%] 873s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_output PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_mandatory_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_expected_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_no_unexpected_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_size PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_tt_size PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_creates_universe PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_guessed_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParser2::test_as_universe_resids PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_output PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_mandatory_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_expected_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_no_unexpected_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_size PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_tt_size PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_creates_universe PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_guessed_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_bonds_total_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_angles_total_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_dihedrals_total_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::TestPSFParserNoTop::test_impropers_total_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::test_psf_nosegid PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_psf.py::test_psf_inscode PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_tables.py::test_moved_to_guessers_warning PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_output PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_mandatory_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_expected_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_no_unexpected_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_size PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_tt_size PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_creates_universe PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_guessed_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_attr_size PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_bonds_atom_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_angles_atom_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_dihedrals_atom_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_impropers_atom_counts PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_bonds_identity PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_angles_identity PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_dihedrals_identity PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_impropers_identity PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_angle_atoms_bonded PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_dihedral_atoms_bonded PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_improper_atoms_bonded PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMParser::test_elements PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_output PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_mandatory_attributes PASSED [ 89%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_expected_attributes PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_no_unexpected_attributes PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_size PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_tt_size PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_creates_universe PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_guessed_attributes PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_attr_size PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_bonds_atom_counts PASSED [ 90%] 874s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_angles_atom_counts PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_dihedrals_atom_counts PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_impropers_atom_counts PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_bonds_identity PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_angles_identity PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_dihedrals_identity PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_impropers_identity PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_angle_atoms_bonded PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_dihedral_atoms_bonded PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_improper_atoms_bonded PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_elements PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMChainidParser::test_chainIDs PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_output PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_mandatory_attributes PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_expected_attributes PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_no_unexpected_attributes PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_size PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_tt_size PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_creates_universe PASSED [ 90%] 875s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_guessed_attributes PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_attr_size PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_bonds_atom_counts PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_angles_atom_counts PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_dihedrals_atom_counts PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_impropers_atom_counts PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_bonds_identity PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_angles_identity PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_dihedrals_identity PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_impropers_identity PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_angle_atoms_bonded PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_dihedral_atoms_bonded PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_improper_atoms_bonded PASSED [ 90%] 876s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM12Parser::test_elements PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_output PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_mandatory_attributes PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_expected_attributes PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_no_unexpected_attributes PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_size PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_tt_size PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_creates_universe PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_guessed_attributes PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_attr_size PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_bonds_atom_counts PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_angles_atom_counts PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_dihedrals_atom_counts PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_impropers_atom_counts PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_bonds_identity PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_angles_identity PASSED [ 90%] 877s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_dihedrals_identity PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_impropers_identity PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_angle_atoms_bonded PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_dihedral_atoms_bonded PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_improper_atoms_bonded PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestParm7Parser::test_elements PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_output PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_mandatory_attributes PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_expected_attributes PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_no_unexpected_attributes PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_size PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_tt_size PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_creates_universe PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_guessed_attributes PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_attr_size PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_bonds_atom_counts PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_angles_atom_counts PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_dihedrals_atom_counts PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_impropers_atom_counts PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_bonds_identity PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_angles_identity PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_dihedrals_identity PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_impropers_identity PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_angle_atoms_bonded PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_dihedral_atoms_bonded PASSED [ 90%] 878s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_improper_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRM2::test_elements PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_output PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_mandatory_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_expected_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_no_unexpected_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_tt_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_creates_universe PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_guessed_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_attr_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_bonds_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_angles_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_dihedrals_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_impropers_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_bonds_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_angles_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_dihedrals_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_impropers_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_angle_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_dihedral_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_improper_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST::test_elements PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_output PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_mandatory_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_expected_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_no_unexpected_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_tt_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_creates_universe PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_guessed_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_attr_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_bonds_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_angles_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_dihedrals_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_impropers_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_bonds_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_angles_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_dihedrals_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_impropers_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_angle_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_dihedral_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_improper_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMNCRST_negative::test_elements PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_output PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_mandatory_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_expected_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_no_unexpected_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_tt_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_creates_universe PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_guessed_attributes PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_attr_size PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_bonds_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_angles_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_dihedrals_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_impropers_atom_counts PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_bonds_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_angles_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_dihedrals_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_impropers_identity PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_angle_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_dihedral_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_improper_atoms_bonded PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestPRMEP::test_elements PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.error1.parm7-%VE Missing in header] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.error2.parm7-'TITLE' missing in header] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.error4.parm7-Invalid header line.] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_value_errors[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/parmed_fad.prmtop-Chamber-style TOP file] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_flag_index_error PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-errmsgs0] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-errmsgs1] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/capped-ala.prmtop-errmsgs2] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ace_mbondi3.negative.parm7-errmsgs3] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ala.ff19SB.OPC.parm7.bz2-errmsgs4] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_top.py::TestErrorsAndWarnings::test_warning[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache_chainid.error5.prmtop.bz2-errmsgs5] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_base.py::TestSquash::test_squash PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_base.py::TestChangeSquash::test_resid_squash PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_base.py::TestChangeSquash::test_segid_squash PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-name] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-resname] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-type] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-segid] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CONFIG-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/CONFIG_minimal-moltype] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.crd-name] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.crd-resname] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.crd-type] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.crd-segid] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[CRD-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.crd-moltype] PASSED [ 90%] 879s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-name] PASSED [ 90%] 880s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-resname] PASSED [ 90%] 880s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-type] PASSED [ 90%] 880s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-segid] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DATA-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-moltype] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_closed.dms-name] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_closed.dms-resname] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_closed.dms-type] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_closed.dms-segid] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[DMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_closed.dms-moltype] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-name] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-resname] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-type] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-segid] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GMS-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gms/symopt.gms-moltype] PASSED [ 90%] 881s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-name] PASSED [ 90%] 882s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-resname] PASSED [ 90%] 882s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-type] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-segid] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[GRO-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.gro-moltype] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-name] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-resname] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-type] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-segid] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[HISTORY-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/HISTORY_minimal-moltype] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/173D.mmtf-name] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/173D.mmtf-resname] PASSED [ 90%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/173D.mmtf-type] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/173D.mmtf-segid] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MMTF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/173D.mmtf-moltype] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-name] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-resname] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-type] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-segid] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[MOL2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/Molecule.mol2-moltype] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-name] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-resname] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-type] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-segid] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PARM7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/tz2.truncoct.parm7.bz2-moltype] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pdb-name] PASSED [ 91%] 883s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pdb-resname] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pdb-type] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pdb-segid] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pdb-moltype] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-name] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-resname] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-type] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-segid] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PDBQT-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/pdbqt_inputpdbqt.pdbqt-moltype] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pqr-name] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pqr-resname] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pqr-type] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pqr-segid] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PQR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_open.pqr-moltype] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-name] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-resname] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-type] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-segid] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PRMTOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/ache.prmtop-moltype] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk.psf-name] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk.psf-resname] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk.psf-type] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk.psf-segid] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[PSF-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk.psf-moltype] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/anti.top-name] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/anti.top-resname] PASSED [ 91%] 884s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/anti.top-type] PASSED [ 91%] 885s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/anti.top-segid] PASSED [ 91%] 885s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TOP-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/anti.top-moltype] PASSED [ 91%] 886s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-name] PASSED [ 91%] 886s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-resname] PASSED [ 91%] 886s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-type] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-segid] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[TPR-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.tpr-moltype] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-name] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-resname] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-type] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-segid] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XML-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/C12x64.xml.bz2-moltype] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-name] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-resname] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-type] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-segid] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XPDB-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/5digitResid.pdb-moltype] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mini.xyz-name] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mini.xyz-resname] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mini.xyz-type] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mini.xyz-segid] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_topology_str_types.py::test_str_types[XYZ-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mini.xyz-moltype] PASSED [ 91%] 887s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_output PASSED [ 91%] 888s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_mandatory_attributes PASSED [ 91%] 888s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_expected_attributes PASSED [ 91%] 888s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_no_unexpected_attributes PASSED [ 91%] 889s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_size PASSED [ 91%] 889s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_tt_size PASSED [ 91%] 889s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_creates_universe PASSED [ 91%] 890s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_guessed_attributes PASSED [ 91%] 890s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_moltypes PASSED [ 91%] 890s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_molnums PASSED [ 91%] 891s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR::test_chainIDs PASSED [ 91%] 891s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 891s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 891s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 891s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 892s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 91%] 893s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 894s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 895s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 895s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 895s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 895s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 895s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 895s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 896s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 897s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 898s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 898s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 898s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 898s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 898s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 898s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 898s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 899s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 91%] 900s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 91%] 901s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 91%] 902s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 91%] 902s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 91%] 902s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 91%] 902s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 91%] 902s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 91%] 902s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 91%] 902s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 91%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 91%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 903s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 904s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 905s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 906s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 906s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 906s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 906s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 906s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 906s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 92%] 906s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 907s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 908s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 909s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 909s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 909s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 92%] 909s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 909s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 910s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 911s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 912s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 913s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 914s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 915s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 915s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 915s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 915s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 915s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 915s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 916s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 92%] 917s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.5.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 92%] 918s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2019-beta3.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020_double.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2021_double.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2022-rc1.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 92%] 919s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRGromacsVersions::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 92%] 920s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_output PASSED [ 92%] 920s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_mandatory_attributes PASSED [ 92%] 920s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_expected_attributes PASSED [ 92%] 920s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_no_unexpected_attributes PASSED [ 92%] 920s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_size PASSED [ 92%] 921s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_tt_size PASSED [ 92%] 921s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_creates_universe PASSED [ 92%] 921s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_guessed_attributes PASSED [ 92%] 922s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_moltypes PASSED [ 92%] 922s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_molnums PASSED [ 92%] 922s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPRDouble::test_chainIDs PASSED [ 92%] 922s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 92%] 923s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 92%] 923s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 92%] 923s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 92%] 923s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 92%] 924s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 92%] 924s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 92%] 924s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 92%] 924s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 92%] 925s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 92%] 925s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 92%] 925s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 925s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 926s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 926s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 926s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 927s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 927s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_moltypes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 927s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 927s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_molnums[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::TestTPR46x::test_chainIDs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/ab42_gmx_4.6.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond8-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 93%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond9-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond10-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_bonds[bond11-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 928s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle6-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_angles[angle7-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 94%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih2-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih3-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih4-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_dihedrals[dih5-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_all_impropers[impr1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.2.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.3.tpr] PASSED [ 95%] 929s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.4.tpr] PASSED [ 95%] 930s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.5.tpr] PASSED [ 95%] 930s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.6.tpr] PASSED [ 95%] 930s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.0.7.tpr] PASSED [ 95%] 930s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.tpr] PASSED [ 95%] 930s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.1.tpr] PASSED [ 95%] 930s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.2.tpr] PASSED [ 95%] 930s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.3.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_4.5.4.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.2.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.4.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.0.5.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_5.1.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2016.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2018.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2023.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_settle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2024.tpr] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/2lyz_gmx_2020-beta2.tpr-OSError] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020-beta2.tpr-OSError] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_3.3.4.tpr-NotImplementedError] PASSED [ 95%] 931s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_fail_for_unsupported_files[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc-OSError] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_5.1.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2016.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2018.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2019-beta3.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2021_double.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2020_double.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2022-rc1.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2023.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/dummy_2024.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2024.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2023.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2022-rc1.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2021.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2020.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2018.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-2016.3.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_no_elements[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/extra-interactions-4.0.7.tpr] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_elements PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_resids[False-0] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_tprparser.py::test_resids[True-1] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 95%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 932s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_number_of_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_number_of_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_atom_type_type[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.txyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::TestTXYZParser::test_atom_type_type[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/test.arc] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::test_TXYZ_elements PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::test_missing_elements_noattribute PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_txyz.py::test_guessed_masses PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_output PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_mandatory_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_expected_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_no_unexpected_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_size PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_tt_size PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_creates_universe PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_guessed_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_guessed_masses PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xpdb.py::TestXPDBParser::test_guessed_types PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_output PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_mandatory_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_expected_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_no_unexpected_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_size PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_tt_size PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_creates_universe PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZMini::test_guessed_attributes PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_output[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_mandatory_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_expected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_no_unexpected_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_tt_size[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_creates_universe[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_attributes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_masses[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_masses[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/topology/test_xyz.py::TestXYZParser::test_guessed_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/2r9r-1b.xyz.bz2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_base.py::test_default_value PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_base.py::test_no_transform_function PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_base.py::test_custom_value PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_base.py::test_setting_thread_limit_value PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_base.py::test_thread_limit_apply PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_boxdimensions_dims PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes0] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes3] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes4] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[dim_vector_shapes5] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector[111909090] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector_asarray[dim_vector_forms_dtypes0] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector_asarray[dim_vector_forms_dtypes1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_vector_asarray[abcd] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_dimensions_transformations_api PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_varying_dimensions_transformations_api PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_boxdimensions.py::test_varying_dimensions_no_data PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe0] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe3] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe4] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[universe5] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[thisisnotanag] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_ag[1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[ ] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[totallynotmasses] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[123456789] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights3] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights4] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights5] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_weights[weights6] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[plane1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[plane2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[plane3] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_bad_plane[notaplane] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_no_masses PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_no_options PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_residue_mismatch PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_com PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_plane[yz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_plane[xz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_plane[xy] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_all_options PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_translation_transformations_api PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe0] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe2] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe3] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe4] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[universe5] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[thisisnotanag] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_universe[1] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_shorter_universe PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[ ] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[totallynotmasses] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[123456789] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights3] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights4] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights5] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_weights[weights6] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[ ] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[totallynotaplane] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[xyz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[123456789] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane4] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane5] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane6] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_bad_plane[plane7] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_no_options PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_plane[yz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_plane[xz] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_plane[xy] PASSED [ 96%] 933s testsuite/MDAnalysisTests/transformations/test_fit.py::test_fit_rot_trans_transformations_api PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_orthogonal_fwd PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_nonorthogonal_fwd PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_2nd_frame PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_3rd_frame PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_iterate_twice PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel_skip PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel_stride_2 PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_nojump_constantvel_jumparound PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_missing_dimensions_init PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_missing_dimensions PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_nojump.py::test_notinvertible PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_fwd PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_bwd PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_reset PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_specific PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_positionaveraging.py::test_posavging_specific_noreset PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotation_matrix PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_custom_point[point0] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_custom_point[point1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_vector[vector0] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_vector[vector1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_cog_nopbc PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_com_nopbc PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_cog_pbc PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_atomgroup_com_pbc PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag0] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag2] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag3] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag4] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[ag5] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[thisisnotanag] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_ag[1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point0] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point2] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point3] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point4] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[point5] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[thisisnotapoint] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_point[1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction0] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction2] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction3] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction4] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[direction5] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[thisisnotadirection] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_direction[1] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_pbc PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[ ] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[totallynotmasses] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[123456789] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights3] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights4] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights5] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_bad_weights[weights6] PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_no_masses PASSED [ 96%] 934s testsuite/MDAnalysisTests/transformations/test_rotate.py::test_rotateby_no_args PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_coords PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector0] PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector1] PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector2] PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector3] PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector4] PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_vector[vector5] PASSED [ 97%] 934s testsuite/MDAnalysisTests/transformations/test_translate.py::test_translate_transformations_api PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_ag PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point0] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point1] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point2] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point3] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point4] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_point[point5] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_pbc PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_bad_center PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_no_masses PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_no_options PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_with_pbc PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_with_mass PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_with_box PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_in_box_coords_all_options PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_translate.py::test_center_transformations_api PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag0] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag1] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag2] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag3] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag4] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[ag5] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[thisisnotanag] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_bad_ag[1] PASSED [ 97%] 935s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_no_options PASSED [ 97%] 936s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[group] PASSED [ 97%] 938s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[residues] PASSED [ 97%] 939s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[segments] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_with_compounds[fragments] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_wrap_api PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag0] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag1] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag2] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag3] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag4] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[ag5] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[thisisnotanag] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_bad_ag[1] PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap PASSED [ 97%] 942s testsuite/MDAnalysisTests/transformations/test_wrap.py::test_unwrap_api PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_authors.py::test_package_authors PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_failed_import PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_import PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_all_exports PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_datafiles.py::test_export_variables PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_active PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_primary[MDAnalysis-MDAnalysis-10.25080/majora-629e541a-00e] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_primary[MDAnalysis-MDAnalysis-10.1002/jcc.21787] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel-MDAnalysis.analysis.hydrogenbonds.hbond_autocorrel-10.1063/1.4922445] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.leaflet-MDAnalysis.analysis.leaflet-10.1002/jcc.21787] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.lib.qcprot-MDAnalysis.lib.qcprot-10.1107/s0108767305015266] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.lib.qcprot-MDAnalysis.lib.qcprot-qcprot2] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.encore-MDAnalysis.analysis.encore-10.1371/journal.pcbi.1004415] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_collector_analysis_modules[MDAnalysis.analysis.dssp-MDAnalysis.analysis.dssp-10.1002/bip.360221211] PASSED [ 97%] 942s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_mmtf PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_duecredit.py::TestDuecredit::test_duecredit_h5md PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_failure.py::test_failure PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/datafiles.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/test_api.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/util.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/dummy.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_pqr.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_itp.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_gsd.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_guessers.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_psf.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_altloc.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_dms.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_tprparser.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_crd.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_xyz.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_minimal.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_tables.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_pdb.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_txyz.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_pdbqt.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_topology_str_types.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_xpdb.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_hoomdxml.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_top.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_mmtf.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_lammpsdata.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_gro.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_dlpoly.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_fhiaims.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/base.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_topology_base.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_mol2.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/topology/test_gms.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/formats/test_libdcd.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/formats/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/formats/test_libmdaxdr.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/import/fork_called.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/import/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/import/test_import.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_accessors.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_atomselections.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_atomgroup.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_topologyobjects.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_universe.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_residuegroup.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_unwrap.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_index_dtype.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_segmentgroup.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_segment.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/util.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_fragments.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_atom.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_requires.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_topology.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_group_traj_access.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_topologyattrs.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_wrap.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_accumulate.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_groups.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_residue.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/core/test_copying.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_pqr.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_gsd.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_trz.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_lammps.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_trj.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_dms.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_xdr.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_namdbin.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_crd.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_xyz.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/reference.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_memory.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_h5md.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_chainreader.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_reader_api.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_windows.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_pdb.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_writer_api.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_timestep_api.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_null.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_txyz.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_mmtf.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_gro.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/base.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_mol2.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_copying.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_tng.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_trc.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_dcd.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/coordinates/test_gms.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/windows/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/capping/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/virtual_sites/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tprs/all_bonded/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dlpoly/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/create_data.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/coordinates/create_h5md_data.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/Amber/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/contacts/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gromacs/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gromacs/gromos54a7_edited.ff/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/analysis/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gms/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/mol2/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/gromos11/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/merge/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/merge/2zmm/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_log.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_qcprot.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/__init__.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_pkdtree.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_neighborsearch.py] PASSED [ 97%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_util.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_nsgrid.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_augment.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_cutil.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/lib/test_distances.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_log.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_imports.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_modelling.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_qcprot.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/__init__.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_transformations.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_pickleio.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_persistence.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_streamio.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_failure.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_authors.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_datafiles.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_meta.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_units.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_duecredit.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/utils/test_selections.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/guesser/test_base.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/guesser/test_default_guesser.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_results.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_msd.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_backends.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_align.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_gnm.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dielectric.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hole2.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/__init__.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_persistencelength.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_lineardensity.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_wbridge.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_leaflet.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_psa.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rdf.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_data.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rdf_s.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_density.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_contacts.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_pca.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_helix_analysis.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_encore.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/conftest.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_distances.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/visualization/__init__.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/auxiliary/test_core.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/auxiliary/__init__.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/auxiliary/base.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/auxiliary/test_edr.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/auxiliary/test_xvg.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_fit.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_nojump.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_base.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/__init__.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_wrap.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_translate.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/transformations/test_rotate.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/test_parmed_parser.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/test_base.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/__init__.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/test_rdkit.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/test_rdkit_parser.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/test_openmm.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/test_openmm_parser.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_imports.py::test_relative_import[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/converters/test_parmed.py] PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_log.py::test_start_stop_logging PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_meta.py::test_import PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_meta.py::test_matching_versions PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_meta.py::test_version_format PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_meta.py::test_version_at_packagelevel PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestCapping::test_capping_file PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestCapping::test_capping_inmemory PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_merge PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_merge_same_universe PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_residue_references PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_segment_references PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_empty_ValueError PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_nonsense_TypeError PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_emptyAG_ValueError PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMerge::test_merge_without_coords PASSED [ 98%] 943s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMergeTopology::test_merge_with_topology PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMergeTopology::test_merge_with_topology_from_different_universes PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_modelling.py::TestMergeTopology::test_merge_without_topology PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_pickle_unpickle_empty PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_two_ag PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_ag_with_universe_f PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_persistence.py::TestAtomGroupPickle::test_unpickle_ag_with_universe PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_persistence.py::TestPicklingUpdatingAtomGroups::test_pickling_uag PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_persistence.py::TestPicklingUpdatingAtomGroups::test_pickling_uag_of_uag PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text0] PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text1] PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text2] PASSED [ 98%] 944s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_text[f_text3] PASSED [ 98%] 945s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text0] PASSED [ 98%] 945s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text1] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text2] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_text[f_text3] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_same[f_text0] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_same[f_text1] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_same[f_text2] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_text_same[f_text3] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_byte[f_byte0] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_byte[f_byte1] PASSED [ 98%] 946s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_get_right_open_handler_byte[f_byte2] PASSED [ 98%] 950s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_byte[f_byte0] PASSED [ 98%] 950s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_byte[f_byte1] PASSED [ 98%] 950s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_iopickle_byte[f_byte2] PASSED [ 98%] 950s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_byte_to_tell[f_byte0] PASSED [ 98%] 950s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_byte_to_tell[f_byte1] PASSED [ 98%] 950s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_offset_byte_to_tell[f_byte2] PASSED [ 98%] 951s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_context_manager_pickle PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_fileio_pickle PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f0] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f1] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f2] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f3] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_unpicklable_open_mode[unpicklable_f4] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f0] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f1] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f2] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f3] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_pickle_with_write_mode[unpicklable_f4] PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_GSD_pickle PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_GSD_with_write_mode PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_NCDF_pickle PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_NCDF_mmap_pickle PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_Chemfiles_pickle SKIPPED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_Chemfiles_with_write_mode SKIPPED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_H5MD_pickle PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_pickleio.py::test_H5MD_pickle_with_driver PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_CalcRMSDRotationalMatrix PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_innerproduct PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_RMSDmatrix PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_RMSDmatrix_simple PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_rmsd PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_qcprot.py::test_weights PASSED [ 98%] 958s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_write_bad_mode PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_write PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_writeselection PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Gromacs::test_write_with PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_write_bad_mode PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_write PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_writeselection PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Charmm::test_write_with PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_write_bad_mode PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_write PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_writeselection PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_PyMOL::test_write_with PASSED [ 98%] 959s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_write_bad_mode PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_write PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_writeselection PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_VMD::test_write_with PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_write_bad_mode PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_write PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_writeselection PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelectionWriter_Jmol::test_write_with PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_selections.py::TestSelections::test_get_writer_valid PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_hasmethod PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_string PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_list PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_iterator PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_file PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_StringIO_read PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestIsstream::test_StringIO_write PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_closing PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_closing_force PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_StringIO_read PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_File_read PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_StringIO_write PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_File_write PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream::test_matryoshka PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[abspath] PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[basename] PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[dirname] PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[expanduser] PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[_path_normpath] PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[relpath] PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[split] PASSED [ 98%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_func[splitext] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_join PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_expanduser_noexpansion_returns_NamedStream PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_expandvars PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_expandvars_noexpansion_returns_NamedStream PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_add PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestNamedStream_filename_behavior::test_radd PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PrimitivePDBReader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PDBReader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_CRDReader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PSFParser PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PSF_CRD PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PQRReader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_PDBQTReader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_GROReader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_MOL2Reader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_streamio.py::TestStreamIO::test_XYZReader PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_identity_matrix[identity_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_identity_matrix[identity_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_translation_matrix[translation_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_translation_matrix[translation_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_translation_from_matrix PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_reflection_matrix[reflection_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_reflection_matrix[reflection_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_reflection_from_matrix PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotation_matrix[rotation_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotation_matrix[rotation_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotation_from_matrix PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_scale_matrix[scale_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_scale_matrix[scale_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_scale_from_matrix PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_1[projection_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_1[projection_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_2[projection_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_2[projection_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_3[projection_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionMatrix::test_projection_matrix_3[projection_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_1 PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_2 PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_3 PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestProjectionFromMatrix::test_projection_from_matrix_4 PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_1[clip_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_1[clip_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_2[clip_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_2[clip_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_left_right_bounds[clip_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_left_right_bounds[clip_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_bottom_top_bounds[clip_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_bottom_top_bounds[clip_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_near_far_bounds[clip_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestClipMatrix::test_clip_matrix_frustrum_near_far_bounds[clip_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_shear_matrix[shear_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_shear_matrix[shear_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_shear_from_matrix PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestDecomposeMatrix::test_decompose_matrix_1 PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestDecomposeMatrix::test_decompose_matrix_2 PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestDecomposeMatrix::test_decompose_matrix_3 PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_compose_matrix PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_1[orthogonalization_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_1[orthogonalization_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_2[orthogonalization_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestOrthogonalizationMatrix::test_orthogonalization_matrix_2[orthogonalization_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_superimposition_matrix[superimposition_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::test_superimposition_matrix[superimposition_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_1[euler_matrix0] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_1[euler_matrix1] PASSED [ 99%] 960s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_2[euler_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerMatrix::test_euler_matrix_2[euler_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_1[euler_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_1[euler_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_2[euler_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestEulerFromMatrix::test_euler_from_matrix_2[euler_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_euler_from_quaternion PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_from_euler[quaternion_from_euler0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_from_euler[quaternion_from_euler1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_about_axis[quaternion_about_axis0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_about_axis[quaternion_about_axis1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_1[quaternion_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_1[quaternion_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_2[quaternion_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_2[quaternion_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_3[quaternion_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionMatrix::test_quaternion_matrix_3[quaternion_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_1[quaternion_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_1[quaternion_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_2[quaternion_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_2[quaternion_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_3[quaternion_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_3[quaternion_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_4[quaternion_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_4[quaternion_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_5[quaternion_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_5[quaternion_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_6[quaternion_from_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestQuaternionFromMatrix::test_quaternion_from_matrix_6[quaternion_from_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_multiply[quaternion_multiply0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_multiply[quaternion_multiply1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_conjugate[quaternion_conjugate0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_conjugate[quaternion_conjugate1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_inverse[quaternion_inverse0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_inverse[quaternion_inverse1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_real PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_imag PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_slerp[quaternion_slerp0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_quaternion_slerp[quaternion_slerp1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_1[random_quaternion0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_1[random_quaternion1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_2[random_quaternion0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomQuaternion::test_random_quaternion_2[random_quaternion1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_random_rotation_matrix[random_rotation_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_random_rotation_matrix[random_rotation_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[1-inverse_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[1-inverse_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[2-inverse_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[2-inverse_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[3-inverse_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[3-inverse_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[4-inverse_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[4-inverse_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[5-inverse_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[5-inverse_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[6-inverse_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse[6-inverse_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse_matrix[inverse_matrix0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestInverseMatrix::test_inverse_matrix[inverse_matrix1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_1[is_same_transform0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_1[is_same_transform1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_2[is_same_transform0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestIsSameTransform::test_is_same_transform_2[is_same_transform1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_1[random_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_1[random_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_2[random_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestRandomVector::test_random_vector_2[random_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_1[unit_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_1[unit_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_2[unit_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_2[unit_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_3[unit_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_3[unit_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_4[unit_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_4[unit_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_5[unit_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_5[unit_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_6[unit_vector0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestUnitVector::test_unit_vector_6[unit_vector1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_1[vector_norm0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_1[vector_norm1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_2[vector_norm0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_2[vector_norm1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_3[vector_norm0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_3[vector_norm1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_4[vector_norm0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_4[vector_norm1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_5[vector_norm0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_5[vector_norm1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_6[vector_norm0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestVectorNorm::test_vector_norm_6[vector_norm1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestArcBall::test_arcball_1 PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::TestArcBall::test_arcball_2 PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotaxis_equal_vectors PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_transformations.py::test_rotaxis_different_vectors PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestUnitEncoding::test_unicode PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestUnitEncoding::test_unicode_encoding_with_symbol PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[N_Avogadro-6.02214129e+23] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[elementary_charge-1.602176565e-19] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[calorie-4.184] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[Boltzmann_constant-0.008314462159] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[Boltzman_constant-0.008314462159] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_constant[electric_constant-0.00552635] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConstants::test_boltzmann_typo_deprecation PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_length[12.34567-nm-A-123.4567] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_length[123.4567-Angstrom-nm-12.34567] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_time[1-ps-AKMA-20.45482949774598] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_time[1-AKMA-ps-0.04888821] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_time[1-ps-ms-1e-09] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_time[1-ms-ps-1000000000.0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_time[1-ps-us-1e-06] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_time[1-us-ps-1000000.0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_energy[1-kcal/mol-kJ/mol-4.184] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_energy[1-kcal/mol-eV-0.0433641] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_force[1-kJ/(mol*A)-J/m-1.66053892103219e-11] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_force[2.5-kJ/(mol*nm)-kJ/(mol*A)-0.25] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_force[1-kcal/(mol*Angstrom)-kJ/(mol*Angstrom)-4.184] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ps-m/s-100.0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ps-nm/ps-0.1] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ps-pm/ps-100.0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/ms-A/ps-1000000000.0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/us-A/ps-1000000.0] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/fs-A/ps-0.001] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_speed[1-A/AKMA-A/ps-20.45482949774598] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unknown[12.34567-Stone-nm] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unknown[12.34567-nm-Stone] PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestConversion::test_unit_unconvertable PASSED [ 99%] 961s testsuite/MDAnalysisTests/utils/test_units.py::TestBaseUnits::test_MDANALYSIS_BASE_UNITS_correct PASSED [ 99%] 961s testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D FAILED [ 99%] 961s testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D_zero_return FAILED [ 99%] 961s testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_3D FAILED [100%] 961s 961s ==================================== ERRORS ==================================== 961s _______ ERROR at setup of TestBAT.test_bat_number_of_frames[client_BAT0] _______ 961s 961s self = 961s selected_residues = 961s client_BAT = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture() 961s def bat(self, selected_residues, client_BAT): 961s R = BAT(selected_residues) 961s > R.run(**client_BAT) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py:46: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _________ ERROR at setup of TestBAT.test_bat_coordinates[client_BAT0] __________ 961s 961s self = 961s selected_residues = 961s client_BAT = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture() 961s def bat(self, selected_residues, client_BAT): 961s R = BAT(selected_residues) 961s > R.run(**client_BAT) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py:46: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ________ ERROR at setup of TestBAT.test_bat_reconstruction[client_BAT0] ________ 961s 961s self = 961s selected_residues = 961s client_BAT = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture() 961s def bat(self, selected_residues, client_BAT): 961s R = BAT(selected_residues) 961s > R.run(**client_BAT) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py:46: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ______________ ERROR at setup of TestBAT.test_bat_IO[client_BAT0] ______________ 961s 961s self = 961s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_bat_IO_client_BAT0_0') 961s selected_residues = 961s client_BAT = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture 961s def bat_npz(self, tmpdir, selected_residues, client_BAT): 961s filename = str(tmpdir / 'test_bat_IO.npy') 961s R = BAT(selected_residues) 961s > R.run(**client_BAT) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py:53: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ________ ERROR at setup of TestBAT.test_bat_incorrect_dims[client_BAT0] ________ 961s 961s self = 961s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_bat_incorrect_dims_client0') 961s selected_residues = 961s client_BAT = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture 961s def bat_npz(self, tmpdir, selected_residues, client_BAT): 961s filename = str(tmpdir / 'test_bat_IO.npy') 961s R = BAT(selected_residues) 961s > R.run(**client_BAT) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py:53: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestBAT.test_Cartesian_does_not_modify_input[client_BAT0] __ 961s 961s self = 961s selected_residues = 961s client_BAT = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture() 961s def bat(self, selected_residues, client_BAT): 961s R = BAT(selected_residues) 961s > R.run(**client_BAT) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py:46: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_hbond_analysis[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_count_by_time[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_count_by_type[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_count_by_ids[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P.test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_count_by_type[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisIdeal.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_first_hbond[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisIdeal.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_count_by_time[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisIdeal.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisIdeal.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisIdeal.test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisIdeal.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:189: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_count_by_type[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisNoRes.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_first_hbond[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisNoRes.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_count_by_time[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisNoRes.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisNoRes.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisNoRes.test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] _ 961s 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @staticmethod 961s @pytest.fixture(scope='class') 961s def hydrogen_bonds(universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis( 961s universe, 961s **TestHydrogenBondAnalysisNoRes.kwargs 961s ) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:354: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_hbond_analysis[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_count_by_time[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_count_by_type[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_count_by_ids[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:58: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3PStartStep.test_hbond_analysis[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis, start=1, step=2) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:638: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3PStartStep.test_count_by_time[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis, start=1, step=2) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:638: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ ERROR at setup of TestHydrogenBondAnalysisTIP3PStartStep.test_count_by_type[client_HydrogenBondAnalysis0] _ 961s 961s self = 961s universe = 961s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.fixture(scope='class') 961s def h(self, universe, client_HydrogenBondAnalysis): 961s h = HydrogenBondAnalysis(universe, **self.kwargs) 961s > h.run(**client_HydrogenBondAnalysis, start=1, step=2) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:638: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s =================================== FAILURES =================================== 961s _____ test_frame_slice_parallel[client_FrameAnalysis0-run_kwargs4-frames4] _____ 961s 961s run_kwargs = {'frames': [True, True, False, True, False, True, ...]} 961s frames = (0, 1, 3, 5, 6, 8) 961s client_FrameAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize('run_kwargs, frames', [ 961s ({'frames': [4, 5, 6, 7, 8, 9]}, np.arange(4, 10)), 961s ({'frames': [0, 2, 4, 6, 8]}, np.arange(0, 10, 2)), 961s ({'frames': [4, 6, 8]}, np.arange(4, 10, 2)), 961s ({'frames': [0, 3, 4, 3, 5]}, [0, 3, 4, 3, 5]), 961s ({'frames': [True, True, False, True, False, True, True, False, True, 961s False]}, (0, 1, 3, 5, 6, 8)), 961s ]) 961s def test_frame_slice_parallel(run_kwargs, frames, client_FrameAnalysis): 961s u = mda.Universe(TPR, XTC) # dt = 100 961s > an = FrameAnalysis(u.trajectory).run(**run_kwargs, **client_FrameAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:254: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s /usr/lib/python3.13/multiprocessing/process.py:121: in start 961s self._popen = self._Popen(self) 961s /usr/lib/python3.13/multiprocessing/context.py:282: in _Popen 961s return Popen(process_obj) 961s /usr/lib/python3.13/multiprocessing/popen_fork.py:20: in __init__ 961s self._launch(process_obj) 961s /usr/lib/python3.13/multiprocessing/popen_fork.py:76: in _launch 961s atexit._run_exitfuncs() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s n = 15 961s f = 961s 961s > signal.signal(signal.SIGTERM, lambda n, f: sys.exit(1)) 961s E SystemExit: 1 961s 961s /usr/lib/python3/dist-packages/gsd/__init__.py:25: SystemExit 961s ______________________ test_rewind[client_FrameAnalysis0] ______________________ 961s 961s client_FrameAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_rewind(client_FrameAnalysis): 961s u = mda.Universe(TPR, XTC) # dt = 100 961s > an = FrameAnalysis(u.trajectory).run(**client_FrameAnalysis, frames=[0, 2, 3, 5, 9]) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:313: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ___________________ test_frames_times[client_FrameAnalysis0] ___________________ 961s 961s client_FrameAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_frames_times(client_FrameAnalysis): 961s u = mda.Universe(TPR, XTC) # dt = 100 961s > an = FrameAnalysis(u.trajectory).run(start=1, stop=8, step=2, **client_FrameAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:319: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ________________________ test_reset_n_parts_to_n_frames ________________________ 961s 961s u = 961s 961s def test_reset_n_parts_to_n_frames(u): 961s """ 961s Issue #4685 961s https://github.com/MDAnalysis/mdanalysis/issues/4685 961s """ 961s a = FrameAnalysis(u.trajectory) 961s with pytest.warns(UserWarning, match='Set `n_parts` to'): 961s > a.run(backend='multiprocessing', 961s start=0, 961s stop=1, 961s n_workers=2, 961s n_parts=2) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:208: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s __________________________ test_warn_nparts_nworkers ___________________________ 961s 961s u = 961s 961s def test_warn_nparts_nworkers(u): 961s a = FrameAnalysis(u.trajectory) 961s with pytest.warns(UserWarning): 961s > a.run(backend='multiprocessing', n_workers=3, n_parts=2) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:335: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ____ test_AnalysisFromFunction[client_AnalysisFromFunction0-None-None-2-49] ____ 961s 961s u = , start = None, stop = None, step = 2 961s nframes = 49 961s client_AnalysisFromFunction = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize('start, stop, step, nframes', [ 961s (None, None, 2, 49), 961s (None, 50, 2, 25), 961s (20, 50, 2, 15), 961s (20, 50, None, 30) 961s ]) 961s def test_AnalysisFromFunction(u, start, stop, step, nframes, client_AnalysisFromFunction): 961s # client_AnalysisFromFunction is defined [here](testsuite/MDAnalysisTests/analysis/conftest.py), 961s # and determines a set of parameters ('backend', 'n_workers'), taking only backends 961s # that are implemented for a given subclass, to run the test against. 961s ana1 = base.AnalysisFromFunction(simple_function, mobile=u.atoms) 961s > ana1.run(start=start, stop=stop, step=step, **client_AnalysisFromFunction) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:433: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _____ test_AnalysisFromFunction[client_AnalysisFromFunction0-None-50-2-25] _____ 961s 961s u = , start = None, stop = 50, step = 2, nframes = 25 961s client_AnalysisFromFunction = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize('start, stop, step, nframes', [ 961s (None, None, 2, 49), 961s (None, 50, 2, 25), 961s (20, 50, 2, 15), 961s (20, 50, None, 30) 961s ]) 961s def test_AnalysisFromFunction(u, start, stop, step, nframes, client_AnalysisFromFunction): 961s # client_AnalysisFromFunction is defined [here](testsuite/MDAnalysisTests/analysis/conftest.py), 961s # and determines a set of parameters ('backend', 'n_workers'), taking only backends 961s # that are implemented for a given subclass, to run the test against. 961s ana1 = base.AnalysisFromFunction(simple_function, mobile=u.atoms) 961s > ana1.run(start=start, stop=stop, step=step, **client_AnalysisFromFunction) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:433: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ______ test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-2-15] ______ 961s 961s u = , start = 20, stop = 50, step = 2, nframes = 15 961s client_AnalysisFromFunction = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize('start, stop, step, nframes', [ 961s (None, None, 2, 49), 961s (None, 50, 2, 25), 961s (20, 50, 2, 15), 961s (20, 50, None, 30) 961s ]) 961s def test_AnalysisFromFunction(u, start, stop, step, nframes, client_AnalysisFromFunction): 961s # client_AnalysisFromFunction is defined [here](testsuite/MDAnalysisTests/analysis/conftest.py), 961s # and determines a set of parameters ('backend', 'n_workers'), taking only backends 961s # that are implemented for a given subclass, to run the test against. 961s ana1 = base.AnalysisFromFunction(simple_function, mobile=u.atoms) 961s > ana1.run(start=start, stop=stop, step=step, **client_AnalysisFromFunction) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:433: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ____ test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-None-30] _____ 961s 961s u = , start = 20, stop = 50, step = None, nframes = 30 961s client_AnalysisFromFunction = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize('start, stop, step, nframes', [ 961s (None, None, 2, 49), 961s (None, 50, 2, 25), 961s (20, 50, 2, 15), 961s (20, 50, None, 30) 961s ]) 961s def test_AnalysisFromFunction(u, start, stop, step, nframes, client_AnalysisFromFunction): 961s # client_AnalysisFromFunction is defined [here](testsuite/MDAnalysisTests/analysis/conftest.py), 961s # and determines a set of parameters ('backend', 'n_workers'), taking only backends 961s # that are implemented for a given subclass, to run the test against. 961s ana1 = base.AnalysisFromFunction(simple_function, mobile=u.atoms) 961s > ana1.run(start=start, stop=stop, step=step, **client_AnalysisFromFunction) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:433: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _____ test_AnalysisFromFunction_args_content[client_AnalysisFromFunction0] _____ 961s 961s u = 961s client_AnalysisFromFunction = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_AnalysisFromFunction_args_content(u, client_AnalysisFromFunction): 961s protein = u.select_atoms('protein') 961s masses = protein.masses.reshape(-1, 1) 961s another = mda.Universe(TPR, XTC).select_atoms("protein") 961s ans = base.AnalysisFromFunction(mass_xyz, protein, another, masses) 961s assert len(ans.args) == 3 961s > result = np.sum(ans.run(**client_AnalysisFromFunction).results.timeseries) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_base.py:472: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ____________ TestBAT.test_bat_coordinates_single_frame[client_BAT0] ____________ 961s 961s self = 961s selected_residues = 961s client_BAT = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_bat_coordinates_single_frame(self, selected_residues, client_BAT): 961s > bat = BAT(selected_residues).run(start=1, stop=2, **client_BAT).results.bat 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_bat.py:77: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _________________ TestDihedral.test_dihedral[client_Dihedral0] _________________ 961s 961s self = 961s atomgroup = 961s client_Dihedral = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_dihedral(self, atomgroup, client_Dihedral): 961s # client_Dihedral is defined in testsuite/analysis/conftest.py 961s # among with other testing fixtures. During testing, it will 961s # collect all possible backends and reasonable number of workers 961s # for a given AnalysisBase subclass, and extend the tests 961s # to run with all of them. 961s 961s > dihedral = Dihedral([atomgroup]).run(**client_Dihedral) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:53: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s __________ TestDihedral.test_dihedral_single_frame[client_Dihedral0] ___________ 961s 961s self = 961s atomgroup = 961s client_Dihedral = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_dihedral_single_frame(self, atomgroup, client_Dihedral): 961s > dihedral = Dihedral([atomgroup]).run(start=5, stop=6, **client_Dihedral) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:61: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ______________ TestDihedral.test_atomgroup_list[client_Dihedral0] ______________ 961s 961s self = 961s atomgroup = 961s client_Dihedral = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_atomgroup_list(self, atomgroup, client_Dihedral): 961s > dihedral = Dihedral([atomgroup, atomgroup]).run(**client_Dihedral) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:69: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s __________ TestDihedral.test_dihedral_attr_warning[client_Dihedral0] ___________ 961s 961s self = 961s atomgroup = 961s client_Dihedral = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_dihedral_attr_warning(self, atomgroup, client_Dihedral): 961s > dihedral = Dihedral([atomgroup]).run(stop=2, **client_Dihedral) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:81: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ___________ TestRamachandran.test_ramachandran[client_Ramachandran0] ___________ 961s 961s self = 961s universe = 961s rama_ref_array = array([[[-124.48583372, 94.9259782 ], 961s [ -96.37595309, 131.32777565], 961s [ -89.19265646, 140.09586001]..., -55.19692701], 961s [ -66.3164188 , -19.67304583], 961s [-129.59004461, 40.81708804]]], shape=(10, 212, 2)) 961s client_Ramachandran = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_ramachandran(self, universe, rama_ref_array, client_Ramachandran): 961s > rama = Ramachandran(universe.select_atoms("protein")).run( 961s **client_Ramachandran) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:99: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ____ TestRamachandran.test_ramachandran_single_frame[client_Ramachandran0] _____ 961s 961s self = 961s universe = 961s rama_ref_array = array([[[-124.48583372, 94.9259782 ], 961s [ -96.37595309, 131.32777565], 961s [ -89.19265646, 140.09586001]..., -55.19692701], 961s [ -66.3164188 , -19.67304583], 961s [-129.59004461, 40.81708804]]], shape=(10, 212, 2)) 961s client_Ramachandran = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_ramachandran_single_frame(self, universe, rama_ref_array, client_Ramachandran): 961s > rama = Ramachandran(universe.select_atoms("protein")).run( 961s start=5, stop=6, **client_Ramachandran) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:107: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ TestRamachandran.test_ramachandran_residue_selections[client_Ramachandran0] __ 961s 961s self = 961s universe = 961s client_Ramachandran = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_ramachandran_residue_selections(self, universe, client_Ramachandran): 961s > rama = Ramachandran(universe.select_atoms("resname GLY")).run( 961s **client_Ramachandran) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:115: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ____ TestRamachandran.test_outside_protein_unchecked[client_Ramachandran0] _____ 961s 961s self = 961s universe = 961s client_Ramachandran = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_outside_protein_unchecked(self, universe, client_Ramachandran): 961s > rama = Ramachandran(universe.select_atoms("resid 220"), 961s check_protein=False).run(**client_Ramachandran) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:129: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _____________________ TestJanin.test_janin[client_Janin0] ______________________ 961s 961s self = 961s universe = 961s janin_ref_array = array([[[193.64583542, 68.93897046], 961s [303.68602905, 177.39171502], 961s [295.786122 , 155.79552693], 961s ...6012 , 187.5011965 ], 961s [294.82576567, 162.35432983], 961s [296.80732627, 179.67398714]]], shape=(10, 129, 2)) 961s client_Janin = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_janin(self, universe, janin_ref_array, client_Janin): 961s > self._test_janin(universe, janin_ref_array, client_Janin) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:171: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:178: in _test_janin 961s janin = Janin(u.select_atoms("protein")).run(**client_Janin) 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ___________________ TestJanin.test_janin_tpr[client_Janin0] ____________________ 961s 961s self = 961s universe_tpr = 961s janin_ref_array = array([[[193.64583542, 68.93897046], 961s [303.68602905, 177.39171502], 961s [295.786122 , 155.79552693], 961s ...6012 , 187.5011965 ], 961s [294.82576567, 162.35432983], 961s [296.80732627, 179.67398714]]], shape=(10, 129, 2)) 961s client_Janin = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_janin_tpr(self, universe_tpr, janin_ref_array, client_Janin): 961s """Test that CYSH are filtered (#2898)""" 961s > self._test_janin(universe_tpr, janin_ref_array, client_Janin) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:175: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:178: in _test_janin 961s janin = Janin(u.select_atoms("protein")).run(**client_Janin) 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ____________ TestJanin.test_janin_residue_selections[client_Janin0] ____________ 961s 961s self = 961s universe = 961s client_Janin = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_janin_residue_selections(self, universe, client_Janin): 961s > janin = Janin(universe.select_atoms("resname LYS")).run(**client_Janin) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py:193: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _ test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] _ 961s 961s pdb_filename = '/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz' 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s @pytest.mark.parametrize("pdb_filename", glob.glob(f"{DSSP_FOLDER}/?????.pdb.gz")) 961s def test_file_guess_hydrogens(pdb_filename, client_DSSP): 961s u = mda.Universe(pdb_filename) 961s with open(f"{pdb_filename.rstrip('.gz')}.dssp", "r") as fin: 961s correct_answ = fin.read().strip().split()[0] 961s 961s > run = DSSP(u, guess_hydrogens=True).run(**client_DSSP) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:18: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ________________________ test_trajectory[client_DSSP0] _________________________ 961s 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_trajectory(client_DSSP): 961s u = mda.Universe(TPR, XTC).select_atoms("protein").universe 961s > run = DSSP(u).run(**client_DSSP, stop=10) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:25: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _________________________ test_atomgroup[client_DSSP0] _________________________ 961s 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_atomgroup(client_DSSP): 961s protein = mda.Universe(TPR, XTC).select_atoms("protein") 961s > run = DSSP(protein).run(**client_DSSP, stop=10) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:37: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _________________ test_trajectory_with_hydrogens[client_DSSP0] _________________ 961s 961s client_DSSP = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_trajectory_with_hydrogens(client_DSSP): 961s u = mda.Universe(TPR, XTC).select_atoms("protein").universe 961s > run = DSSP(u, guess_hydrogens=False).run(**client_DSSP, stop=10) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_dssp.py:47: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s _____________________ TestEncore.test_parallel_calculation _____________________ 961s 961s self = 961s 961s @pytest.mark.xfail(os.name == 'nt', 961s reason="Not yet supported on Windows.") 961s def test_parallel_calculation(self): 961s 961s arguments = [tuple([i]) for i in np.arange(0,100)] 961s 961s parallel_calculation = encore.utils.ParallelCalculation(function=function, 961s n_jobs=4, 961s args=arguments) 961s > results = parallel_calculation.run() 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_encore.py:139: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/encore/utils.py:300: in run 961s manager = Manager() 961s /usr/lib/python3.13/multiprocessing/context.py:57: in Manager 961s m.start() 961s /usr/lib/python3.13/multiprocessing/managers.py:565: in start 961s self._process.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ________________________ test_gnm[client_GNMAnalysis0] _________________________ 961s 961s universe = 961s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_gnm_client_GNMAnalysis0_0') 961s client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_gnm(universe, tmpdir, client_GNMAnalysis): 961s output = os.path.join(str(tmpdir), 'output.txt') 961s gnm = mda.analysis.gnm.GNMAnalysis(universe, ReportVector=output) 961s > gnm.run(**client_GNMAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_gnm.py:44: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ____________________ test_gnm_run_step[client_GNMAnalysis0] ____________________ 961s 961s universe = 961s client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_gnm_run_step(universe, client_GNMAnalysis): 961s gnm = mda.analysis.gnm.GNMAnalysis(universe) 961s > gnm.run(step=3, **client_GNMAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_gnm.py:56: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 961s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 961s ______________ test_closeContactGNMAnalysis[client_GNMAnalysis0] _______________ 961s 961s universe = 961s client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 961s 961s def test_closeContactGNMAnalysis(universe, client_GNMAnalysis): 961s gnm = mda.analysis.gnm.closeContactGNMAnalysis(universe, weights="size") 961s > gnm.run(stop=2, **client_GNMAnalysis) 961s 961s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_gnm.py:93: 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 961s remote_objects: list["AnalysisBase"] = executor.apply( 961s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 961s with Pool(processes=self.n_workers) as pool: 961s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 961s return Pool(processes, initializer, initargs, maxtasksperchild, 961s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 961s self._repopulate_pool() 961s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 961s return self._repopulate_pool_static(self._ctx, self.Process, 961s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 961s w.start() 961s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 961s 961s self = 961s 961s def start(self): 961s ''' 961s Start child process 961s ''' 961s self._check_closed() 961s assert self._popen is None, 'cannot start a process twice' 961s assert self._parent_pid == os.getpid(), \ 961s 'can only start a process object created by current process' 961s > assert not _current_process._config.get('daemon'), \ 961s 'daemonic processes are not allowed to have children' 961s E AssertionError: daemonic processes are not allowed to have children 961s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ________ test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] ________ 962s 962s universe = 962s client_GNMAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_closeContactGNMAnalysis_weights_None(universe, client_GNMAnalysis): 962s gnm = mda.analysis.gnm.closeContactGNMAnalysis(universe, weights=None) 962s > gnm.run(stop=2, **client_GNMAnalysis) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_gnm.py:119: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _ TestHydrogenBondAnalysisIdeal.test_logging_step_not_1[client_HydrogenBondAnalysis0] _ 962s 962s self = 962s universe = 962s caplog = <_pytest.logging.LogCaptureFixture object at 0x73e45c5e5940> 962s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_logging_step_not_1(self, universe, caplog, 962s client_HydrogenBondAnalysis): 962s hbonds = HydrogenBondAnalysis(universe, **self.kwargs) 962s # using step 2 962s > hbonds.run(**client_HydrogenBondAnalysis, step=2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:273: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _ TestHydrogenBondAnalysisNoRes.test_logging_step_not_1[client_HydrogenBondAnalysis0] _ 962s 962s self = 962s universe = 962s caplog = <_pytest.logging.LogCaptureFixture object at 0x73e449097750> 962s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_logging_step_not_1(self, universe, caplog, 962s client_HydrogenBondAnalysis): 962s hbonds = HydrogenBondAnalysis(universe, **self.kwargs) 962s # using step 2 962s > hbonds.run(**client_HydrogenBondAnalysis, step=2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:273: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _ TestHydrogenBondAnalysisBetween.test_between_all[client_HydrogenBondAnalysis0] _ 962s 962s self = 962s universe = 962s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_between_all(self, universe, client_HydrogenBondAnalysis): 962s # don't specify groups between which to find hydrogen bonds 962s hbonds = HydrogenBondAnalysis(universe, between=None, **self.kwargs) 962s > hbonds.run(**client_HydrogenBondAnalysis) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:451: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _ TestHydrogenBondAnalysisBetween.test_between_PW[client_HydrogenBondAnalysis0] _ 962s 962s self = 962s universe = 962s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_between_PW(self, universe, client_HydrogenBondAnalysis): 962s # Find only protein-water hydrogen bonds 962s hbonds = HydrogenBondAnalysis( 962s universe, 962s between=["resname PROT", "resname SOL"], 962s **self.kwargs 962s ) 962s > hbonds.run(**client_HydrogenBondAnalysis) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:471: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _ TestHydrogenBondAnalysisBetween.test_between_PW_PP[client_HydrogenBondAnalysis0] _ 962s 962s self = 962s universe = 962s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_between_PW_PP(self, universe, client_HydrogenBondAnalysis): 962s # Find protein-water and protein-protein hydrogen bonds (not 962s # water-water) 962s hbonds = HydrogenBondAnalysis( 962s universe, 962s between=[ 962s ["resname PROT", "resname SOL"], 962s ["resname PROT", "resname PROT"] 962s ], 962s **self.kwargs 962s ) 962s > hbonds.run(**client_HydrogenBondAnalysis) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:493: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _ TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_.test_no_hydrogens[client_HydrogenBondAnalysis0] _ 962s 962s self = 962s universe = 962s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_no_hydrogens(self, universe, client_HydrogenBondAnalysis): 962s # If no hydrogens are identified at a given frame, check an 962s # empty donor atom group is created 962s test_kwargs = TestHydrogenBondAnalysisTIP3P.kwargs.copy() 962s test_kwargs['donors_sel'] = None # use topology to find pairs 962s test_kwargs['hydrogens_sel'] = "name H" # no atoms have name H 962s 962s h = HydrogenBondAnalysis(universe, **test_kwargs) 962s > h.run(**client_HydrogenBondAnalysis) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:527: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _ TestHydrogenBondAnalysisEmptySelections.test_hbond_analysis[client_HydrogenBondAnalysis0] _ 962s 962s self = 962s universe = 962s client_HydrogenBondAnalysis = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_hbond_analysis(self, universe, client_HydrogenBondAnalysis): 962s 962s h = HydrogenBondAnalysis(universe, donors_sel=' ', hydrogens_sel=' ', 962s acceptors_sel=' ') 962s > h.run(**client_HydrogenBondAnalysis) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py:701: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _______________________ TestRMSD.test_rmsd[client_RMSD0] _______________________ 962s 962s self = 962s universe = 962s correct_values = [[0, 1, 0], [49, 50, 4.68953]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd(self, universe, correct_values, client_RMSD): 962s # client_RMSD is defined in testsuite/analysis/conftest.py 962s # among with other testing fixtures. During testing, it will 962s # collect all possible backends and reasonable number of workers 962s # for a given AnalysisBase subclass, and extend the tests 962s # to run with all of them. 962s RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA') 962s > RMSD.run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:196: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ___________________ TestRMSD.test_rmsd_frames[client_RMSD0] ____________________ 962s 962s self = 962s universe = 962s correct_values = [[0, 1, 0], [49, 50, 4.68953]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd_frames(self, universe, correct_values, client_RMSD): 962s RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA') 962s > RMSD.run(frames=[0, 49], **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:203: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ______________ TestRMSD.test_rmsd_unicode_selection[client_RMSD0] ______________ 962s 962s self = 962s universe = 962s correct_values = [[0, 1, 0], [49, 50, 4.68953]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd_unicode_selection(self, universe, correct_values, client_RMSD): 962s RMSD = MDAnalysis.analysis.rms.RMSD(universe, select=u'name CA') 962s > RMSD.run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:210: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ____________ TestRMSD.test_rmsd_atomgroup_selections[client_RMSD0] _____________ 962s 962s self = 962s universe = 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd_atomgroup_selections(self, universe, client_RMSD): 962s # see Issue #1684 962s > R1 = MDAnalysis.analysis.rms.RMSD(universe.atoms, 962s select="resid 1-30").run(**client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:217: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ________________ TestRMSD.test_rmsd_single_frame[client_RMSD0] _________________ 962s 962s self = 962s universe = 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd_single_frame(self, universe, client_RMSD): 962s > RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA', 962s ).run(start=5, stop=6, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:224: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________ TestRMSD.test_mass_weighted[client_RMSD0] ___________________ 962s 962s self = 962s universe = 962s correct_values = [[0, 1, 0], [49, 50, 4.68953]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_mass_weighted(self, universe, correct_values, client_RMSD): 962s # mass weighting the CA should give the same answer as weighing 962s # equally because all CA have the same mass 962s > RMSD = MDAnalysis.analysis.rms.RMSD(universe, select='name CA', 962s weights='mass').run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:234: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _________________ TestRMSD.test_custom_weighted[client_RMSD0] __________________ 962s 962s self = 962s universe = 962s correct_values_mass = [[0, 1, 0], [49, 50, 4.7492]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_custom_weighted(self, universe, correct_values_mass, client_RMSD): 962s > RMSD = MDAnalysis.analysis.rms.RMSD(universe, weights="mass").run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:242: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________ TestRMSD.test_weights_mass_is_mass_weighted[client_RMSD0] ___________ 962s 962s self = 962s universe = 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_weights_mass_is_mass_weighted(self, universe, client_RMSD): 962s > RMSD_mass = MDAnalysis.analysis.rms.RMSD(universe, 962s weights="mass").run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:249: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s _______________ TestRMSD.test_custom_weighted_list[client_RMSD0] _______________ 962s 962s self = 962s universe = 962s correct_values_mass = [[0, 1, 0], [49, 50, 4.7492]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_custom_weighted_list(self, universe, correct_values_mass, client_RMSD): 962s weights = universe.atoms.masses 962s > RMSD = MDAnalysis.analysis.rms.RMSD(universe, 962s weights=list(weights)).run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:259: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __ TestRMSD.test_custom_groupselection_weights_applied_1D_array[client_RMSD0] __ 962s 962s self = 962s universe = 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_custom_groupselection_weights_applied_1D_array(self, universe, client_RMSD): 962s > RMSD = MDAnalysis.analysis.rms.RMSD(universe, 962s select='backbone', 962s groupselections=['name CA and resid 1-5', 'name CA and resid 1'], 962s weights=None, 962s weights_groupselections=[[1, 0, 0, 0, 0], None]).run(step=49, 962s **client_RMSD 962s ) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:266: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ____ TestRMSD.test_custom_groupselection_weights_applied_mass[client_RMSD0] ____ 962s 962s self = 962s universe = 962s correct_values_mass = [[0, 1, 0], [49, 50, 4.7492]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_custom_groupselection_weights_applied_mass(self, universe, correct_values_mass, client_RMSD): 962s > RMSD = MDAnalysis.analysis.rms.RMSD(universe, 962s select='backbone', 962s groupselections=['all', 'all'], 962s weights=None, 962s weights_groupselections=['mass', 962s universe.atoms.masses]).run(step=49, 962s **client_RMSD 962s ) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:279: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ______________ TestRMSD.test_rmsd_group_selections[client_RMSD0] _______________ 962s 962s self = 962s universe = 962s correct_values_group = [[0, 1, 0, 0, 0], [49, 50, 4.7857, 4.7048, 4.6924]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd_group_selections(self, universe, correct_values_group, client_RMSD): 962s > RMSD = MDAnalysis.analysis.rms.RMSD(universe, 962s groupselections=['backbone', 'name CA'] 962s ).run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:328: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ________ TestRMSD.test_rmsd_backbone_and_group_selection[client_RMSD0] _________ 962s 962s self = 962s universe = 962s correct_values_backbone_group = [[0, 1, 0, 0, 0], [49, 50, 4.6997, 1.9154, 2.7139]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd_backbone_and_group_selection(self, universe, 962s correct_values_backbone_group, 962s client_RMSD): 962s > RMSD = MDAnalysis.analysis.rms.RMSD( 962s universe, 962s reference=universe, 962s select="backbone", 962s groupselections=['backbone and resid 1:10', 962s 'backbone and resid 10:20']).run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:338: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ____________ TestRMSD.test_ref_mobile_mass_mismapped[client_RMSD0] _____________ 962s 962s self = 962s universe = 962s correct_values_mass_add_ten = [[0, 1, 0.0632], [49, 50, 4.771]] 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_ref_mobile_mass_mismapped(self, universe,correct_values_mass_add_ten, client_RMSD): 962s reference = MDAnalysis.Universe(PSF, DCD) 962s universe.atoms.masses = universe.atoms.masses + 10 962s RMSD = MDAnalysis.analysis.rms.RMSD(universe, 962s reference=reference, 962s select='all', 962s weights='mass', 962s tol_mass=100) 962s > RMSD.run(step=49, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:370: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ________________ TestRMSD.test_rmsd_attr_warning[client_RMSD0] _________________ 962s 962s self = 962s universe = 962s client_RMSD = {'backend': 'multiprocessing', 'n_workers': 2} 962s 962s def test_rmsd_attr_warning(self, universe, client_RMSD): 962s > RMSD = MDAnalysis.analysis.rms.RMSD( 962s universe, select='name CA').run(stop=2, **client_RMSD) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/analysis/test_rms.py:384: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/base.py:822: in run 962s remote_objects: list["AnalysisBase"] = executor.apply( 962s /usr/lib/python3/dist-packages/MDAnalysis/analysis/backends.py:252: in apply 962s with Pool(processes=self.n_workers) as pool: 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u0] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u1] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u2] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u3] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u4] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u5] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u6] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u7] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u8] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u9] ___________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u10] __________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u11] __________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u12] __________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u13] __________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s __________________________ test_multiprocess_COG[u14] __________________________ 962s 962s u = 962s 962s def test_multiprocess_COG(u): 962s ag = u.atoms[2:5] 962s 962s ref = np.array([cog(u, ag, i) 962s for i in range(3)]) 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:126: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ____________________ test_universe_unpickle_in_new_process _____________________ 962s 962s def test_universe_unpickle_in_new_process(): 962s u = mda.Universe(GRO, XTC) 962s ref = [getnames(u, i) 962s for i in range(3)] 962s 962s > p = multiprocessing.Pool(2) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:143: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ________________ test_creating_multiple_universe_without_offset ________________ 962s 962s temp_xtc = PosixPath('/tmp/pytest-of-ubuntu/pytest-0/test_creating_multiple_univers0/testing.xtc') 962s ncopies = 3 962s 962s def test_creating_multiple_universe_without_offset(temp_xtc, ncopies=3): 962s # test if they can be created without generating 962s # the offset simultaneously. 962s # The tested XTC file is way too short to induce a race scenario but the 962s # test is included as documentation for the scenario that used to create 962s # a problem (see PR #3375 and issues #3230, #1988) 962s 962s args = (GRO, str(temp_xtc)) 962s > with multiprocessing.Pool(2) as p: 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:159: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ______________________________ test_streamplot_2D ______________________________ 962s 962s membrane_xtc = '/tmp/pytest-of-ubuntu/pytest-0/streamlines0/dummy.xtc' 962s univ = 962s 962s def test_streamplot_2D(membrane_xtc, univ): 962s # regression test the data structures 962s # generated by the 2D streamplot code 962s > u1, v1, avg, std = streamlines.generate_streamlines(topology_file_path=Martini_membrane_gro, 962s trajectory_file_path=membrane_xtc, 962s grid_spacing=20, 962s MDA_selection='name PO4', 962s start_frame=1, 962s end_frame=2, 962s xmin=univ.atoms.positions[...,0].min(), 962s xmax=univ.atoms.positions[...,0].max(), 962s ymin=univ.atoms.positions[...,1].min(), 962s ymax=univ.atoms.positions[...,1].max(), 962s maximum_delta_magnitude=2.0, 962s num_cores=1) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py:57: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/visualization/streamlines.py:330: in generate_streamlines 962s pool = multiprocessing.Pool(num_cores) 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ------------------------------ Captured log setup ------------------------------ 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:653 Universe.load_new(): loading /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/martini_dppc_chol_bilayer.gro... 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s INFO MDAnalysis.core.universe:universe.py:1682 attribute types has been guessed successfully. 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s INFO MDAnalysis.core.universe:universe.py:1682 attribute masses has been guessed successfully. 962s ________________________ test_streamplot_2D_zero_return ________________________ 962s 962s membrane_xtc = '/tmp/pytest-of-ubuntu/pytest-0/streamlines0/dummy.xtc' 962s univ = 962s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_streamplot_2D_zero_return0') 962s 962s def test_streamplot_2D_zero_return(membrane_xtc, univ, tmpdir): 962s # simple roundtrip test to ensure that 962s # zeroed arrays are returned by the 2D streamplot 962s # code when called with an empty selection 962s > u1, v1, avg, std = streamlines.generate_streamlines(topology_file_path=Martini_membrane_gro, 962s trajectory_file_path=membrane_xtc, 962s grid_spacing=20, 962s MDA_selection='name POX', 962s start_frame=1, 962s end_frame=2, 962s xmin=univ.atoms.positions[...,0].min(), 962s xmax=univ.atoms.positions[...,0].max(), 962s ymin=univ.atoms.positions[...,1].min(), 962s ymax=univ.atoms.positions[...,1].max(), 962s maximum_delta_magnitude=2.0, 962s num_cores=1) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py:87: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/visualization/streamlines.py:330: in generate_streamlines 962s pool = multiprocessing.Pool(num_cores) 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ______________________________ test_streamplot_3D ______________________________ 962s 962s membrane_xtc = '/tmp/pytest-of-ubuntu/pytest-0/streamlines0/dummy.xtc' 962s univ = 962s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_streamplot_3D0') 962s 962s def test_streamplot_3D(membrane_xtc, univ, tmpdir): 962s # because mayavi is too heavy of a dependency 962s # for a roundtrip plotting test, simply 962s # aim to check for sensible values 962s # returned by generate_streamlines_3d 962s > dx, dy, dz = streamlines_3D.generate_streamlines_3d(topology_file_path=Martini_membrane_gro, 962s trajectory_file_path=membrane_xtc, 962s grid_spacing=20, 962s MDA_selection='name PO4', 962s start_frame=1, 962s end_frame=2, 962s xmin=univ.atoms.positions[...,0].min(), 962s xmax=univ.atoms.positions[...,0].max(), 962s ymin=univ.atoms.positions[...,1].min(), 962s ymax=univ.atoms.positions[...,1].max(), 962s zmin=univ.atoms.positions[...,2].min(), 962s zmax=univ.atoms.positions[...,2].max(), 962s maximum_delta_magnitude=2.0, 962s num_cores=1) 962s 962s /tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py:110: 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s /usr/lib/python3/dist-packages/MDAnalysis/visualization/streamlines_3D.py:468: in generate_streamlines_3d 962s pool = multiprocessing.Pool(num_cores) 962s /usr/lib/python3.13/multiprocessing/context.py:119: in Pool 962s return Pool(processes, initializer, initargs, maxtasksperchild, 962s /usr/lib/python3.13/multiprocessing/pool.py:215: in __init__ 962s self._repopulate_pool() 962s /usr/lib/python3.13/multiprocessing/pool.py:306: in _repopulate_pool 962s return self._repopulate_pool_static(self._ctx, self.Process, 962s /usr/lib/python3.13/multiprocessing/pool.py:329: in _repopulate_pool_static 962s w.start() 962s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 962s 962s self = 962s 962s def start(self): 962s ''' 962s Start child process 962s ''' 962s self._check_closed() 962s assert self._popen is None, 'cannot start a process twice' 962s assert self._parent_pid == os.getpid(), \ 962s 'can only start a process object created by current process' 962s > assert not _current_process._config.get('daemon'), \ 962s 'daemonic processes are not allowed to have children' 962s E AssertionError: daemonic processes are not allowed to have children 962s 962s /usr/lib/python3.13/multiprocessing/process.py:118: AssertionError 962s ------------------------------ Captured log call ------------------------------- 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s DEBUG MDAnalysis.core.universe:universe.py:653 Universe.load_new(): loading /tmp/pytest-of-ubuntu/pytest-0/streamlines0/dummy.xtc... 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s INFO MDAnalysis.core.universe:universe.py:1682 attribute types has been guessed successfully. 962s DEBUG MDAnalysis.core.universe:universe.py:1014 _process_attr: Adding to topology 962s INFO MDAnalysis.core.universe:universe.py:1682 attribute masses has been guessed successfully. 962s =========================== short test summary info ============================ 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis0-run_kwargs4-frames4] 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_rewind[client_FrameAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_frames_times[client_FrameAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_reset_n_parts_to_n_frames 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_warn_nparts_nworkers 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-None-None-2-49] 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-None-50-2-25] 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-2-15] 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-None-30] 962s FAILED testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction_args_content[client_AnalysisFromFunction0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates_single_frame[client_BAT0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral[client_Dihedral0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_single_frame[client_Dihedral0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_atomgroup_list[client_Dihedral0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_attr_warning[client_Dihedral0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran[client_Ramachandran0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_single_frame[client_Ramachandran0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_residue_selections[client_Ramachandran0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_unchecked[client_Ramachandran0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin[client_Janin0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_tpr[client_Janin0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_residue_selections[client_Janin0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_parallel_calculation 962s FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD0] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u0] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u1] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u2] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u3] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u4] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u5] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u6] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u7] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u8] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u9] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u10] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u11] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u12] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u13] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_multiprocess_COG[u14] 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_universe_unpickle_in_new_process 962s FAILED testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py::test_creating_multiple_universe_without_offset 962s FAILED testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D 962s FAILED testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_2D_zero_return 962s FAILED testsuite/MDAnalysisTests/visualization/test_streamlines.py::test_streamplot_3D 962s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_number_of_frames[client_BAT0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates[client_BAT0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_reconstruction[client_BAT0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO[client_BAT0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_incorrect_dims[client_BAT0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_Cartesian_does_not_modify_input[client_BAT0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis0] 962s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis0] 962s = 122 failed, 18953 passed, 558 skipped, 2 deselected, 7 xfailed, 2 xpassed, 104286 warnings, 29 errors in 682.04s (0:11:22) = 990s PASSED [ 0%] 990s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs0] PASSED [ 0%] 990s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs1] PASSED [ 0%] 990s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs2] PASSED [ 0%] 990s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs3] PASSED [ 0%] 990s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs4] PASSED [ 0%] 990s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs5] PASSED [ 0%] 990s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis0-run_kwargs6] PASSED [ 0%] 991s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_bool_fail[client_FrameAnalysis0] PASSED [ 0%] 991s testsuite/MDAnalysisTests/analysis/test_base.py::test_rewind[client_FrameAnalysis0] PASSED [ 0%] 992s testsuite/MDAnalysisTests/analysis/test_base.py::test_frames_times[client_FrameAnalysis0] PASSED [ 0%] 992s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs0-frames0] PASSED [ 0%] 992s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs1-frames1] PASSED [ 0%] 992s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs2-frames2] PASSED [ 0%] 992s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step_parallel[client_FrameAnalysis1-run_kwargs3-frames3] PASSED [ 0%] 992s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs0-frames0] PASSED [ 0%] 992s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs1-frames1] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs2-frames2] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs3-frames3] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice_parallel[client_FrameAnalysis1-run_kwargs4-frames4] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs0] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs1] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs2] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs3] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs4] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs5] PASSED [ 0%] 993s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_fail[client_FrameAnalysis1-run_kwargs6] PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_bool_fail[client_FrameAnalysis1] PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_rewind[client_FrameAnalysis1] PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_frames_times[client_FrameAnalysis1] PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_reset_n_parts_to_n_frames PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs0-frames0] PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs1-frames1] PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs2-frames2] PASSED [ 0%] 994s testsuite/MDAnalysisTests/analysis/test_base.py::test_start_stop_step[run_kwargs3-frames3] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs0-frames0] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs1-frames1] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs2-frames2] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs3-frames3] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_frame_slice[run_kwargs4-frames4] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_parallelizable_transformations PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_instance_serial_backend PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_warn_nparts_nworkers PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_not_parallelizable[AnalysisBase-False] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_not_parallelizable[AnalysisFromFunction-True] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_not_parallelizable[FrameAnalysis-True] PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar_run PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_verbose_progressbar_run_with_kwargs PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_progressbar_multiprocessing PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_incomplete_defined_analysis PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_old_api PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_filter_baseanalysis_kwargs_VE PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_filter_baseanalysis_kwargs PASSED [ 0%] 995s testsuite/MDAnalysisTests/analysis/test_base.py::test_results_type PASSED [ 0%] 998s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-None-None-2-49] PASSED [ 0%] 1000s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-None-50-2-25] PASSED [ 0%] 1003s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-2-15] PASSED [ 0%] 1005s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction0-20-50-None-30] PASSED [ 0%] 1006s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction_args_content[client_AnalysisFromFunction0] PASSED [ 0%] 1006s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-None-2-49] PASSED [ 0%] 1006s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-None-50-2-25] PASSED [ 0%] 1006s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-2-15] PASSED [ 0%] 1006s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction[client_AnalysisFromFunction1-20-50-None-30] PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_base.py::test_AnalysisFromFunction_args_content[client_AnalysisFromFunction1] PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_base.py::test_analysis_class[client_AnalysisFromFunctionAnalysisClass0] PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_base.py::test_analysis_class_decorator PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_root_selection PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_number_of_frames[client_BAT0] PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates[client_BAT0] PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates_single_frame[client_BAT0] PASSED [ 0%] 1007s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_reconstruction[client_BAT0] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO[client_BAT0] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_incorrect_dims[client_BAT0] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_Cartesian_does_not_modify_input[client_BAT0] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_number_of_frames[client_BAT1] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates[client_BAT1] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_coordinates_single_frame[client_BAT1] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_reconstruction[client_BAT1] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_IO[client_BAT1] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_incorrect_dims[client_BAT1] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_Cartesian_does_not_modify_input[client_BAT1] PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_nobonds PASSED [ 0%] 1008s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_bad_initial_atom PASSED [ 0%] 1009s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_disconnected_atom_group PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_bat.py::TestBAT::test_bat_multifragments_atomgroup PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q_folded PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_soft_cut_q_unfolded PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r0-2-1] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r1-1-0] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r2-1-0.5] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r3-cutoff3-1] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_hard_cut_q[r4-cutoff4-0] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r0-None-2-1] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r1-None-1-0] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_radius_cut_q[r2-None-1-0.5] PASSED [ 0%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_contact_matrix PASSED [ 1%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_new_selection PASSED [ 1%] 1010s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_valid_types[(resname ASP GLU) and (name OE* OD*)] PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_valid_types[(resname ARG LYS) and (name NH* NZ)] PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_contacts_selections PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[1] PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[ag1] PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[Universe] PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_select_wrong_types[USE UPDATING AG] PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_startframe PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_end_zero PASSED [ 1%] 1011s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_slicing PASSED [ 1%] 1012s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_folded PASSED [ 1%] 1012s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_villin_unfolded PASSED [ 1%] 1012s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_hard_cut_method PASSED [ 1%] 1012s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_radius_cut_method PASSED [ 1%] 1012s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_own_method PASSED [ 1%] 1013s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_own_method_no_array_cast PASSED [ 1%] 1013s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_non_callable_method PASSED [ 1%] 1013s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_distance_box[True-expected0] PASSED [ 1%] 1013s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_distance_box[False-expected1] PASSED [ 1%] 1013s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_warn_deprecated_attr PASSED [ 1%] 1013s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_n_initial_contacts[datafiles0-0] PASSED [ 1%] 1021s testsuite/MDAnalysisTests/analysis/test_contacts.py::TestContacts::test_n_initial_contacts[datafiles1-41814] PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_contacts.py::test_q1q2 PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_data.py::test_all_exports PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_shape PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_edges PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_midpoints PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_delta PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_grid PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_origin PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_keyerror PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_attributeError PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_unit_nolength PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_density_none PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_set_density_not_in_units PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_parameters_isdensity PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_grid_not_density PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_value_error PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_units_same_density_units PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_units_density PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_convert_length_same_length_units PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_convert_length_other_length_units PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_repr PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_length_edges PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_check_convert_density_edges PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[float] PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[double] PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[int] PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensity::test_export_types[byte] PASSED [ 1%] 1022s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_run[static] PASSED [ 1%] 1023s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_run[dynamic] PASSED [ 1%] 1023s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_sliced PASSED [ 1%] 1023s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_eqbox PASSED [ 1%] 1024s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_neqbox PASSED [ 1%] 1024s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_userdefn_boxshape PASSED [ 1%] 1025s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_userdefn_padding PASSED [ 1%] 1025s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_userdefn_smallgrid PASSED [ 1%] 1025s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_shape PASSED [ 1%] 1026s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_type PASSED [ 1%] 1026s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_gridcenter_missing PASSED [ 1%] 1026s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_xdim_type PASSED [ 1%] 1027s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_userdefn_xdim_nanvalue PASSED [ 1%] 1027s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_noatomgroup PASSED [ 1%] 1027s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_ValueError_noatomgroup PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_density.py::TestDensityAnalysis::test_warn_results_deprecated PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_density.py::TestGridImport::test_absence_griddata PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_density.py::TestGridImport::test_presence_griddata PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_broken_molecules PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_broken_repaired_molecules PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_temperature PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_non_charges PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_non_neutral PASSED [ 1%] 1028s testsuite/MDAnalysisTests/analysis/test_dielectric.py::TestDielectric::test_free_charges PASSED [ 1%] 1029s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_eg PASSED [ 1%] 1029s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_dist_weights PASSED [ 1%] 1029s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_dist_weights_frames PASSED [ 1%] 1029s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_distvalues_ag_universe PASSED [ 1%] 1030s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_distvalues_ag_select PASSED [ 1%] 1030s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_different_steps PASSED [ 1%] 1030s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_transform PASSED [ 1%] 1030s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_long_traj PASSED [ 1%] 1030s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_updating_atomgroup PASSED [ 1%] 1030s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_not_universe_atomgroup_error PASSED [ 1%] 1030s testsuite/MDAnalysisTests/analysis/test_diffusionmap.py::test_DistanceMatrix_attr_warning PASSED [ 1%] 1031s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral[client_Dihedral0] PASSED [ 1%] 1031s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_single_frame[client_Dihedral0] PASSED [ 1%] 1032s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_atomgroup_list[client_Dihedral0] PASSED [ 1%] 1032s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_enough_atoms[client_Dihedral0] PASSED [ 1%] 1033s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_attr_warning[client_Dihedral0] PASSED [ 1%] 1033s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral[client_Dihedral1] PASSED [ 1%] 1033s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_single_frame[client_Dihedral1] PASSED [ 1%] 1034s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_atomgroup_list[client_Dihedral1] PASSED [ 1%] 1034s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_enough_atoms[client_Dihedral1] PASSED [ 1%] 1034s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestDihedral::test_dihedral_attr_warning[client_Dihedral1] PASSED [ 1%] 1035s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran[client_Ramachandran0] PASSED [ 1%] 1035s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_single_frame[client_Ramachandran0] PASSED [ 1%] 1036s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_residue_selections[client_Ramachandran0] PASSED [ 1%] 1036s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_length[client_Ramachandran0] PASSED [ 1%] 1036s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_unchecked[client_Ramachandran0] PASSED [ 1%] 1037s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran[client_Ramachandran1] PASSED [ 1%] 1037s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_single_frame[client_Ramachandran1] PASSED [ 1%] 1037s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_residue_selections[client_Ramachandran1] PASSED [ 1%] 1038s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_length[client_Ramachandran1] PASSED [ 1%] 1038s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_outside_protein_unchecked[client_Ramachandran1] PASSED [ 1%] 1038s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_protein_ends PASSED [ 1%] 1039s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_None_removal PASSED [ 1%] 1039s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_plot PASSED [ 1%] 1039s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestRamachandran::test_ramachandran_attr_warning PASSED [ 1%] 1040s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin[client_Janin0] PASSED [ 1%] 1040s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_tpr[client_Janin0] PASSED [ 1%] 1041s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_residue_selections[client_Janin0] PASSED [ 1%] 1041s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin[client_Janin1] PASSED [ 1%] 1042s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_tpr[client_Janin1] PASSED [ 1%] 1042s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_residue_selections[client_Janin1] PASSED [ 1%] 1042s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_single_frame PASSED [ 1%] 1043s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_outside_protein_length PASSED [ 1%] 1043s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_remove_residues PASSED [ 1%] 1043s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_atom_selection PASSED [ 1%] 1043s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_plot PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::TestJanin::test_janin_attr_warning PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_class_is_parallelizable[Dihedral-True] PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_class_is_parallelizable[Ramachandran-True] PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_class_is_parallelizable[Janin-True] PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_supported_backends[Dihedral-backends0] PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_supported_backends[Ramachandran-backends1] PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_dihedrals.py::test_supported_backends[Janin-backends2] PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_np PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_sparse PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_box_numpy PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_distances.py::TestContactMatrix::test_box_sparse PASSED [ 1%] 1044s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_pairwise_dist PASSED [ 1%] 1045s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_pairwise_dist_box PASSED [ 1%] 1046s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_pairwise_dist_offset_effect PASSED [ 1%] 1047s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_offset_calculation PASSED [ 1%] 1048s testsuite/MDAnalysisTests/analysis/test_distances.py::TestDist::test_mismatch_exception PASSED [ 1%] 1048s testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_simple_case_indices_only PASSED [ 1%] 1048s testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_return_type[5.9] PASSED [ 1%] 1049s testsuite/MDAnalysisTests/analysis/test_distances.py::TestBetween::test_between_return_type[0.0] PASSED [ 1%] 1049s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 1%] 1049s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 1%] 1049s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] PASSED [ 1%] 1050s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 1%] 1050s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 1%] 1050s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 1%] 1050s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] PASSED [ 1%] 1050s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 1%] 1050s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] PASSED [ 1%] 1051s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 1%] 1051s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 1%] 1051s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 1%] 1051s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] PASSED [ 1%] 1051s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 1%] 1051s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 1%] 1052s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 1%] 1052s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] PASSED [ 1%] 1052s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 1%] 1052s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] PASSED [ 1%] 1052s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 1%] 1052s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 1%] 1053s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 1%] 1053s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 1%] 1053s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 1%] 1053s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 1%] 1053s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 1%] 1053s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 1%] 1054s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] PASSED [ 1%] 1054s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 1%] 1054s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 1%] 1054s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 1%] 1054s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 1%] 1054s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 1%] 1054s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 1%] 1055s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 1%] 1055s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] PASSED [ 1%] 1055s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 1%] 1055s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 1%] 1055s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 1%] 1055s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 1%] 1056s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 1%] 1056s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 1%] 1056s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] PASSED [ 1%] 1056s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 1%] 1056s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 1%] 1056s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] PASSED [ 1%] 1056s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 1%] 1057s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] PASSED [ 1%] 1057s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 1%] 1058s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 1%] 1059s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP0] PASSED [ 1%] 1060s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP0] PASSED [ 1%] 1060s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP0] PASSED [ 1%] 1060s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_without_hydrogen_fails[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 1%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_uneven_number_of_atoms_fails[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz] PASSED [ 1%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP0-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 1%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xcjA.pdb.gz] PASSED [ 1%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nngA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3fhkA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3k7pA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1bvyF.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4gcnA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ny7A.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1i8nA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1or4A.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nbkA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3q4oA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3pivA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1v7mV.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3lqcA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1dx5I.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3a4rA.pdb.gz] PASSED [ 2%] 1061s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2gu3A.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3e8mA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gfsA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3l4rA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3aqgA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xr6A.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1pdoA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ejfA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2fvvA.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3t5gB.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2i39A.pdb.gz] PASSED [ 2%] 1062s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3vjzA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ieyB.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3ii2A.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1lpbA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cviA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3nzmA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1y1lA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2j49A.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1eteA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2cayA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/4dkcA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2qdlA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3hklA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1ahsA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gknA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3gwiA.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2va0A.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3on9A.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1h4aX.pdb.gz] PASSED [ 2%] 1063s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/3so6A.pdb.gz] PASSED [ 2%] 1064s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_file_guess_hydrogens[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2a2lA.pdb.gz] PASSED [ 2%] 1064s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory[client_DSSP1] PASSED [ 2%] 1065s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_atomgroup[client_DSSP1] PASSED [ 2%] 1065s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_hydrogens[client_DSSP1] PASSED [ 2%] 1065s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_without_hydrogen_fails[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/2xdgA.pdb.gz] PASSED [ 2%] 1065s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_trajectory_with_uneven_number_of_atoms_fails[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/1mr1D_failing.pdb.gz] PASSED [ 2%] 1065s testsuite/MDAnalysisTests/analysis/test_dssp.py::test_exception_raises_with_atom_index[client_DSSP1-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/dssp/wrong_hydrogens.pdb.gz] PASSED [ 2%] 1065s testsuite/MDAnalysisTests/analysis/test_encore.py::test_moved_to_mdakit_warning PASSED [ 2%] 1065s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_triangular_matrix PASSED [ 2%] 1066s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_parallel_calculation PASSED [ 2%] 1066s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition PASSED [ 2%] 1066s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_with_superimposition_custom_weights PASSED [ 2%] 1066s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_rmsd_matrix_without_superimposition PASSED [ 2%] 1067s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ensemble_superimposition PASSED [ 2%] 1067s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ensemble_superimposition_to_reference_non_weighted PASSED [ 2%] 1067s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_covariance_matrix PASSED [ 2%] 1067s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_covariance_matrix_with_reference PASSED [ 2%] 1069s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_to_self PASSED [ 2%] 1071s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes PASSED [ 2%] 1074s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_custom_weights PASSED [ 2%] 1076s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_align PASSED [ 2%] 1076s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_to_self PASSED [ 2%] 1077s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces PASSED [ 2%] 1077s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_to_self PASSED [ 2%] 1078s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres PASSED [ 2%] 1079s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_without_superimposition XPASS [ 2%] 1079s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_convergence PASSED [ 2%] 1080s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_convergence PASSED [ 2%] 1081s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_hes_error_estimation XPASS [ 2%] 1082s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_error_estimation PASSED [ 2%] 1086s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_ces_error_estimation_ensemble_bootstrap PASSED [ 2%] 1087s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncore::test_dres_error_estimation PASSED [ 2%] 1087s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_one_ensemble PASSED [ 2%] 1088s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_ensembles PASSED [ 2%] 1089s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_three_ensembles_two_identical PASSED [ 2%] 1089s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_methods PASSED [ 2%] 1089s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_AffinityPropagationNative_direct PASSED [ 2%] 1089s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_AffinityPropagation_direct PASSED [ 2%] 1089s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_KMeans_direct PASSED [ 2%] 1089s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_DBSCAN_direct PASSED [ 2%] 1090s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_different_methods PASSED [ 2%] 1090s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_method_w_no_distance_matrix PASSED [ 2%] 1090s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_clustering_two_methods_one_w_no_distance_matrix PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_sklearn_affinity_propagation PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_init PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_Cluster_init PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_get_ids PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_ClusterCollection_get_centroids PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_add_metadata PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_empty_cluster PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_centroid_not_in_elements PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_metadata_size_error PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_iteration PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_len PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClustering::test_cluster_repr PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreClusteringSklearn::test_one PASSED [ 2%] 1091s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_one_ensemble PASSED [ 2%] 1092s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_ensembles PASSED [ 2%] 1092s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_three_ensembles_two_identical PASSED [ 2%] 1093s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_specified_dimension PASSED [ 2%] 1093s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_SPENative_direct PASSED [ 2%] 1093s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_PCA_direct PASSED [ 2%] 1093s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_different_method PASSED [ 2%] 1094s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_methods PASSED [ 2%] 1094s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreDimensionalityReduction::test_dimensionality_reduction_two_different_methods PASSED [ 2%] 1095s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreConfDistMatrix::test_get_distance_matrix PASSED [ 2%] 1095s testsuite/MDAnalysisTests/analysis/test_encore.py::TestEncoreImportWarnings::test_import_warnings PASSED [ 2%] 1095s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis0] PASSED [ 2%] 1096s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis0] PASSED [ 2%] 1098s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis0] PASSED [ 2%] 1100s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis0] PASSED [ 2%] 1101s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm[client_GNMAnalysis1] PASSED [ 2%] 1101s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_run_step[client_GNMAnalysis1] PASSED [ 2%] 1104s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis[client_GNMAnalysis1] PASSED [ 2%] 1106s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_closeContactGNMAnalysis_weights_None[client_GNMAnalysis1] PASSED [ 2%] 1106s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_generate_kirchoff PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_gnm.py::test_gnm_SVD_fail PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_plane_circle PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_ortho_circle PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_around_circle PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_around_circle_rising PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_local_screw_angles_parallel_axes PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis0-screw_angles0] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis1-screw_angles1] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis2-screw_angles2] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis3-screw_angles3] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis4-screw_angles4] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis5-screw_angles5] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis6-screw_angles6] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis7-screw_angles7] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis8-screw_angles8] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis9-screw_angles9] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis10-screw_angles10] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis11-screw_angles11] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis12-screw_angles12] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis13-screw_angles13] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_zigzag[ref_axis14-screw_angles14] PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_helix_analysis_square_oct PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_summary PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_regression_values PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_multiple_selections PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_universe_from_origins PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_universe_from_origins_except PASSED [ 2%] 1107s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_multiple_atoms_per_residues PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_residue_gaps_split PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_residue_gaps_no_split PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_len_groups_short PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis0-screw_angles0] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis1-screw_angles1] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis2-screw_angles2] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis3-screw_angles3] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis4-screw_angles4] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis5-screw_angles5] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis6-screw_angles6] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis7-screw_angles7] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis8-screw_angles8] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis9-screw_angles9] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis10-screw_angles10] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis11-screw_angles11] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis12-screw_angles12] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis13-screw_angles13] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::TestHELANAL::test_helanal_zigzag[ref_axis14-screw_angles14] PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_helix_analysis.py::test_vector_of_best_fit PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hole2.py::test_moved_to_mdakit_warning SKIPPED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_continuous PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_continuous_excl PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent_timecut PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_intermittent_excl PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_continuous PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_intermittent PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_wronglength_DA PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_exclusions PASSED [ 2%] 1108s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_bond_type_VE PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::TestHydrogenBondAutocorrel::test_repr PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::test_find_donors PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py::test_donors_nobonds PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_continuous_excl PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_timecut PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_intermittent_excl PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_continuous PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_intermittent PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_wronglength_DA PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_exclusions PASSED [ 2%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_bond_type_VE PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_solve_before_run_VE PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_unslicable_traj_VE PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_repr PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::TestHydrogenBondAutocorrel::test_deprecation_warning PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_donors PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_donors_nobonds PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_find_hydrogen_donors_deprecation_warning PASSED [ 3%] 1109s testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py::test_moved_module_warning PASSED [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] ERROR [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis0] FAILED [ 3%] 1110s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 1111s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis0] ERROR [ 3%] 1111s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 1111s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis0] ERROR [ 3%] 1111s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis0] FAILED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis0] FAILED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis0] FAILED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis0] FAILED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis0] FAILED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis0] ERROR [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis0] FAILED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_count_by_ids[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_first_hbond[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_logging_step_not_1[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_first_hbond[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_hydrogen_bond_lifetime_intermittency[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_logging_step_not_1[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_all[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisBetween::test_between_PW_PP[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_count_by_ids[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_hbonds_deprecated_attr[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessAcceptors_GuessHydrogens_UseTopology_::test_no_hydrogens[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_time[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3PStartStep::test_count_by_type[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_hbond_analysis[client_HydrogenBondAnalysis1] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_bond_info_exception PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_bond_donor_sel PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisIdeal::test_no_attr_hbonds PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_bond_info_exception PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_bond_donor_sel PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_attr_hbonds PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisNoRes::test_no_hydrogen_bonds PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessDonors_NoTopology::test_guess_donors PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens_empty_selection PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisTIP3P_GuessHydrogens_NoTopology::test_guess_hydrogens_min_max_mass PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[donors_sel] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[hydrogens_sel] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py::TestHydrogenBondAnalysisEmptySelections::test_empty_sel[acceptors_sel] PASSED [ 3%] 1112s testsuite/MDAnalysisTests/analysis/test_leaflet.py::test_optional_nx SKIPPED [ 3%] 1113s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_leaflet_finder PASSED [ 3%] 1113s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_string_vs_atomgroup_proper PASSED [ 3%] 1113s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_optimize_cutoff PASSED [ 3%] 1113s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_pbc_on_off PASSED [ 3%] 1113s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_pbc_on_off_difference PASSED [ 3%] 1113s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[True] PASSED [ 3%] 1113s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[False] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_sparse_on_off_none[None] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_cutoff_update PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_cutoff_update_default PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_write_selection PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_leaflet.py::TestLeafletFinder::test_component_index_is_not_none PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_invalid_grouping PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[atoms-expected_masses0-expected_charges0-expected_xmass0-expected_xcharge0] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[residues-expected_masses1-expected_charges1-expected_xmass1-expected_xcharge1] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[segments-expected_masses2-expected_charges2-expected_xmass2-expected_xcharge2] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_lineardensity[fragments-expected_masses3-expected_charges3-expected_xmass3-expected_xcharge3] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_updating_atomgroup PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_old_name_deprecations PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_lineardensity.py::test_parallel_analysis PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::test_notidynamics PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_selection_works PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_ag_accepted PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_updating_ag_rejected PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[foo] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[bar] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[yx] PASSED [ 3%] 1114s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_msdtype_error[zyx] PASSED [ 3%] 1115s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xyz-3] PASSED [ 3%] 1115s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xy-2] PASSED [ 3%] 1115s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[xz-2] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[yz-2] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[x-1] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[y-1] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_step_traj_all_dims[z-1] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xyz-3] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xy-2] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[xz-2] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[yz-2] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[x-1] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[y-1] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_simple_start_stop_step_all_dims[z-1] PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDSimple::test_random_walk_u_simple PASSED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_default SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_default_per_particle SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xyz] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xy] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[xz] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[yz] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[x] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[y] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims[z] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xyz] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xy] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[xz] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[yz] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[x] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[y] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_vs_simple_all_dims_per_particle[z] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xyz-3] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xy-2] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[xz-2] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[yz-2] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[x-1] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[y-1] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_step_traj_all_dims[z-1] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xyz-3] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xy-2] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[xz-2] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[yz-2] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[x-1] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[y-1] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_fft_start_stop_step_all_dims[z-1] SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_msd.py::TestMSDFFT::test_random_walk_u_fft SKIPPED [ 3%] 1116s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_empty_ag_error PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_shape PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_results_keys PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_invalid_residue_types PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_selection_length_mismatch PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_deprecation_warning PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dist_strand_verification PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[0] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[1] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[2] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[parsnips] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[time] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_wc_dis_results_keyerrs[-1] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_minor_dist PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nucleicacids.py::test_major_dist PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_wc_pair[1-2-RNAA-RNAA-4.3874702] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_wc_pair[22-23-RNAA-RNAA-4.1716404] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_minor_pair[3-17-RNAA-RNAA-15.06506] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_minor_pair[20-5-RNAA-RNAA-3.219116] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_major_pair[2-12-RNAA-RNAA-26.884272] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_major_pair[5-9-RNAA-RNAA-13.578535] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-9-3.16497] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_cp[RNAA-21-22.07721] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_as[RNAA-1-359.5758] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_phase_as[RNAA-11-171.71645] PASSED [ 3%] 1117s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors[RNAA-5-expected_value0] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors[RNAA-21-expected_value1] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_alpha[RNAA-6-279.15103] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_alpha[RNAA-18-298.09936] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_beta[RNAA-7-184.20501] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_beta[RNAA-15-169.70042] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_gamma[RNAA-7-52.72022] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_gamma[RNAA-15-54.59684] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_delta[RNAA-7-84.80554] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_delta[RNAA-15-82.00043] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_eps[RNAA-7-200.4099] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_eps[RNAA-15-210.96953] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_zeta[RNAA-7-297.84736] PASSED [ 3%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_zeta[RNAA-15-330.24898] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-1-178.37435] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-2-202.03418] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-7-200.91674] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_tors_chi[RNAA-15-209.32109] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-20-103.07024] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-5-156.62223] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-7-77.94538] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_hydroxyl[RNAA-15-130.18539] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_pseudo_dihe_baseflip[16-2-3-RNAA-RNAA-RNAA-314.69804] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_nuclinfo.py::test_pseudo_dihe_baseflip[8-9-10-RNAA-RNAA-RNAA-34.50106] PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cov PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cum_var PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pcs PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pcs_n_components PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_different_steps PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_different_atoms PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_rerun PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_not_run PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_no_frames PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_can_run_frames PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_mismatch PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_transform_universe PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_no_pca_run PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_none_anchor PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_more_anchor PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_less_anchor PASSED [ 4%] 1118s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_invalid_anchor PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_compare_projections PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_reconstruct_whole PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-0] PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-n21] PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[n12-n22] PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[0-1] PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_twice_projection[1-0] PASSED [ 4%] 1119s testsuite/MDAnalysisTests/analysis/test_pca.py::test_project_extrapolate_translation PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cosine_content PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_mean_shape PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_calculate_mean PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_given_mean PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_wrong_num_given_mean PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_alignment PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_covariance_norm PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_rmsip_self PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_rmsip_ortho PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pytest_too_many_components PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_asymmetric_rmsip PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_cumulative_overlap_self PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_cumulative_overlap_ortho PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_other[rmsip] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_other[cumulative_overlap] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_self[rmsip] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_not_run_self[cumulative_overlap] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_wrong_class[rmsip] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_compare_wrong_class[cumulative_overlap] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[p_components] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[variance] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_pca_attr_warning[cumulated_variance] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_class_is_parallelizable[PCA-False] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_pca.py::test_supported_backends[PCA-backends0] PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_ag_ValueError PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_run PASSED [ 4%] 1120s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_lb PASSED [ 4%] 1121s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_fit PASSED [ 4%] 1121s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_raise_NoDataError PASSED [ 4%] 1121s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_plot_ax_return PASSED [ 4%] 1122s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_plot_with_ax PASSED [ 4%] 1122s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test_current_axes PASSED [ 4%] 1122s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[lb] PASSED [ 4%] 1122s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[lp] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestPersistenceLength::test[fit] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestFitExponential::test_fit_simple PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestFitExponential::test_fit_noisy PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_missing_bonds PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_sortbb PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_not_fragment PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_branches PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_persistencelength.py::TestSortBackbone::test_circular PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_psa.py::test_moved_to_mdakit_warning SKIPPED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_nbins PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_range PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_count_sum PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_count PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_double_run PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_exclusion PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[residue-8] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[segment-0] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues[chain-8] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_ignore_same_residues_fails PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[rdf] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[bins] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[edges] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_rdf_attr_warning[count] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[density-1.956823] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[rdf-244602.88385] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm[none-4] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm_values[Density-density] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_norm_values[None-none] PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf.py::test_unknown_norm PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_nbins PASSED [ 4%] 1123s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_range PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_count_size PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_count PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_double_run PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_cdf PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[None-26551.55088100731] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[False-26551.55088100731] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_density[True-0.021915460340071267] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_overwrite_norm PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[density-0.021915460340071267] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[rdf-26551.55088100731] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm[none-0.6] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm_values[Density-density] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_norm_values[None-none] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_unknown_norm PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[rdf] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[bins] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[edges] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[count] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_rdf_s.py::test_rdf_attr_warning[cdf] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_get PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_no_attr PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_set_attr PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_set_key PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[_MutableMapping__marker] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__abstractmethods__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__class__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__class_getitem__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__contains__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__copy__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__delattr__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__delitem__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__dict__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__dir__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__doc__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__eq__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__firstlineno__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__format__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ge__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__getattribute__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__getitem__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__getstate__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__gt__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__hash__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__init__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__init_subclass__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ior__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__iter__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__le__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__len__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__lt__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__module__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ne__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__new__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__or__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__reduce__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__reduce_ex__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__repr__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__reversed__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__ror__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__setattr__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__setitem__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__sizeof__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__slots__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__static_attributes__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__str__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__subclasshook__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[__weakref__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[_abc_impl] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[clear] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[copy] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[fromkeys] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[get] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[items] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[keys] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[pop] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[popitem] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[setdefault] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[update] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[values] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_existing_dict_attr[data] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[_MutableMapping__marker] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__abstractmethods__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__class__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__class_getitem__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__contains__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__copy__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__delattr__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__delitem__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__dict__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__dir__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__doc__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__eq__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__firstlineno__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__format__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ge__] PASSED [ 4%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__getattribute__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__getitem__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__getstate__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__gt__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__hash__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__init__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__init_subclass__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ior__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__iter__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__le__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__len__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__lt__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__module__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ne__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__new__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__or__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__reduce__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__reduce_ex__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__repr__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__reversed__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__ror__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__setattr__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__setitem__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__sizeof__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__slots__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__static_attributes__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__str__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__subclasshook__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[__weakref__] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[_abc_impl] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[clear] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[copy] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[fromkeys] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[get] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[items] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[keys] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[pop] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[popitem] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[setdefault] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[update] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[values] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_wrong_init_type[data] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[0123] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[0j] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[1.1] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[{}] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_weird_key[a b] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_setattr_modify_item PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_setitem_modify_item PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_delattr PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_missing_delattr PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_pop PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_update PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_update_data_fail PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_pickle PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args0-kwargs0-1] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args1-kwargs1-1] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args2-kwargs2-2] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_initialize_arguments[args3-kwargs3-1] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_Results::test_different_instances PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[1] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[2] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[5] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_results.py::Test_ResultsGroup::test_all_results[14] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_p_frames PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_no_center PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_center PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_list PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_superposition[float32] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_superposition[float64] PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights_and_superposition_1 PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_weights_and_superposition_2 PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_unequal_shape PASSED [ 5%] 1124s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_wrong_weights PASSED [ 5%] 1125s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_smaller PASSED [ 5%] 1125s testsuite/MDAnalysisTests/analysis/test_rms.py::Testrmsd::test_with_superposition_equal PASSED [ 5%] 1125s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD0] FAILED [ 5%] 1125s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD0] FAILED [ 5%] 1125s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD0] FAILED [ 5%] 1125s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD0] FAILED [ 5%] 1125s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD0] FAILED [ 5%] 1126s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD0] FAILED [ 5%] 1126s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD0] FAILED [ 5%] 1126s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD0] FAILED [ 5%] 1126s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD0] FAILED [ 5%] 1126s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD0] FAILED [ 5%] 1126s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD0] FAILED [ 5%] 1126s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD0] FAILED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD0] FAILED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD0] FAILED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD0] FAILED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd[client_RMSD1] PASSED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_frames[client_RMSD1] PASSED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_unicode_selection[client_RMSD1] PASSED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_atomgroup_selections[client_RMSD1] PASSED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_single_frame[client_RMSD1] PASSED [ 5%] 1127s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_weighted[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_weights_mass_is_mass_weighted[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_weighted_list[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_1D_array[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_custom_groupselection_weights_applied_mass[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_group_selections[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_backbone_and_group_selection[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_mobile_mass_mismapped[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_attr_warning[client_RMSD1] PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_scalar_weights_raises_ValueError PASSED [ 5%] 1128s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_string_weights_raises_ValueError PASSED [ 5%] 1129s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_mismatched_weights_raises_ValueError PASSED [ 5%] 1129s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_misuse_weights_for_groupselection_raises_TypeError PASSED [ 5%] 1129s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_mismatched_weights_in_groupselection_raises_ValueError PASSED [ 5%] 1129s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_rmsd_list_of_weights_wrong_length PASSED [ 5%] 1129s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_ref_length_unequal_len PASSED [ 5%] 1129s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_mass_mismatches PASSED [ 5%] 1129s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSD::test_group_selections_unequal_len PASSED [ 5%] 1130s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf[client_RMSF0] PASSED [ 5%] 1130s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_single_frame[client_RMSF0] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_identical_frames[client_RMSF0] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_rms.py::TestRMSF::test_rmsf_attr_warning[client_RMSF0] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_rms.py::test_class_is_parallelizable[RMSD-True] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_rms.py::test_class_is_parallelizable[RMSF-False] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_rms.py::test_supported_backends[RMSD-backends0] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_rms.py::test_supported_backends[RMSF-backends1] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_waterdynamics.py::test_moved_to_mdakit_warning SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_nodata PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_selection_type_error PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_distance_type_error PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_selection2_type_error PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_empty_selection PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_loop PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter_pbc[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_accepter_pbc[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_accepter_donor[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_accepter_donor[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_water_donor[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_donor_water_donor[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_empty PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_same_selection PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_2water_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_3water_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_3water_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_4water_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_4water_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_22water_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_22water_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_timeseries_wba PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_timeseries_hba PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_12water_accepter[hydrogen] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_acceptor_12water_accepter[heavy] PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_single_link PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_multiple_link PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_multiple_frame PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_filter PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_merge PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_type_order PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_time PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_time_weight PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_count_by_time_empty PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_generate_table_hba PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_generate_table_s1s2 PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_timesteps_by_type PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_duplicate_water PASSED [ 5%] 1131s testsuite/MDAnalysisTests/analysis/test_wbridge.py::TestWaterBridgeAnalysis::test_warn_results_deprecated PASSED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_none PASSED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_wrong_auxdata PASSED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_get_auxreader_for_wrong_format PASSED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_notimplemented_read_next_timestep PASSED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_core.py::test_notimplemented_memory_usage PASSED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::test_pyedr_not_present_raises PASSED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_raise_error_no_auxdata_provided SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_n_steps SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_dt SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_initial_time SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_first_step SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_next SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_rewind SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_move_to_step SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_last_step SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_next_past_last_step_raises_StopIteration SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_move_to_invalid_step_raises_IndexError SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_invalid_step_to_time_raises_ValueError SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iter SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iter_list SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iter_slice SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_start_after_stop_raises_IndexError SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_out_of_range_raises_IndexError SKIPPED [ 5%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_slice_non_int_raises_TypeError SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_bad_represent_raises_ValueError SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_time_selector SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_time_selector_manual SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_data_selector SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_no_constant_dt SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_update_ts_without_auxname_raises_ValueError SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_closest_with_cutoff SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_auxreader_for SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_auxiliary_read_ts_rewind SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_description SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_load_from_description SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_out_of_bounds SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_no_time_diff SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_go_to_step_fail SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_set_constant_dt[True] SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_set_constant_dt[False] SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_copy SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_time_non_constant_dt SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iterate_through_trajectory SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_iterate_as_auxiliary_from_trajectory SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_step_to_frame_time_diff SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_lower_freq_timestep SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_higher_freq_timestep SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_offset_timestep SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_average SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_represent_as_average_with_cutoff SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_all_terms_from_file SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_all_terms_from_reader SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_term_list_custom_names_from_file SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_term_list_custom_names_from_reader SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_raise_error_if_auxname_already_assigned SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_single_term_custom_name_from_file SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_add_single_term_custom_name_from_reader SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_terms_update_on_iter SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_invalid_data_selector SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_read_all_times SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_from_string SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_from_list SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_everything SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[42] SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[Not a valid term] SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_get_data_invalid_selections[get_data_input2] SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warning_when_space_in_aux_spec SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warn_too_much_memory_usage SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_auxreader_picklable SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_units_are_converted_by_EDRReader SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_warning_when_unknown_unit SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::TestEDRReader::test_unit_conversion_is_optional SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_edr.py::test_single_frame_input_file SKIPPED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_time_none PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_time_invalid_index PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGStep::test_select_data_none PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_raise_error_no_auxdata_provided PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_n_steps PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_dt PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_initial_time PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_first_step PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_next PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_rewind PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_move_to_step PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_last_step PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_next_past_last_step_raises_StopIteration PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_move_to_invalid_step_raises_IndexError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_invalid_step_to_time_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iter PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iter_list PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iter_slice PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_start_after_stop_raises_IndexError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_out_of_range_raises_IndexError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_slice_non_int_raises_TypeError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_bad_represent_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_selector PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_non_constant_dt PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_selector_manual PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_data_selector PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_no_constant_dt PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_update_ts_without_auxname_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_lower_freq_timestep PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_average PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_average_with_cutoff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_offset_timestep PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_represent_as_closest_with_cutoff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_read_higher_freq_timestep PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_get_auxreader_for PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iterate_through_trajectory PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_iterate_as_auxiliary_from_trajectory PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_auxiliary_read_ts_rewind PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_get_description PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_load_from_description PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_out_of_bounds PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_no_time_diff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_step_to_frame_time_diff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_go_to_step_fail PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_set_constant_dt[True] PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_set_constant_dt[False] PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_copy PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_changing_n_col_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_time_selector_out_of_range_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGReader::test_data_selector_out_of_range_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_raise_error_no_auxdata_provided PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_n_steps PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_dt PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_initial_time PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_first_step PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_next PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_rewind PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_move_to_step PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_last_step PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_next_past_last_step_raises_StopIteration PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_move_to_invalid_step_raises_IndexError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_invalid_step_to_time_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iter PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iter_list PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iter_slice PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_start_after_stop_raises_IndexError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_out_of_range_raises_IndexError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_slice_non_int_raises_TypeError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_bad_represent_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_selector PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_non_constant_dt PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_selector_manual PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_data_selector PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_no_constant_dt PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_update_ts_without_auxname_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_lower_freq_timestep PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_average PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_average_with_cutoff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_offset_timestep PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_represent_as_closest_with_cutoff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_read_higher_freq_timestep PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iterate_through_trajectory PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_iterate_as_auxiliary_from_trajectory PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_auxiliary_read_ts_rewind PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_get_description PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_load_from_description PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_out_of_bounds PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_no_time_diff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_step_to_frame_time_diff PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_go_to_step_fail PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_set_constant_dt[True] PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_set_constant_dt[False] PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_copy PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_changing_n_col_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_time_selector_out_of_range_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_data_selector_out_of_range_raises_ValueError PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_get_auxreader_for PASSED [ 6%] 1131s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::TestXVGFileReader::test_reopen PASSED [ 6%] 1132s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::test_xvg_bz2 PASSED [ 6%] 1132s testsuite/MDAnalysisTests/auxiliary/test_xvg.py::test_xvg_file_bz2 PASSED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_base.py::test_coordinate_converterbase_warning PASSED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_base.py::test_converters_converterbase_no_warning PASSED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRequiresRDKit::test_converter_requires_rdkit PASSED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_coordinates[mol2_mol-1] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_coordinates[smiles_mol-3] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_no_coordinates SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitReader::test_compare_mol2reader SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_no_atoms_attr SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[[H]] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[C] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[O] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_single_atom_mol[[He]] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[PRO-14-1] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[ILE-38-1] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[ALA-20-2] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_mol_from_selection[GLY-21-3] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resid 1-0] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resname LYS and name NZ-1] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_monomer_info[resid 34 and altloc B-2] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_identical_topology[mol2_mol] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_identical_topology[smiles_mol] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_raise_requires_elements SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_warn_guess_bonds SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_bonds_outside_sel SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_error_no_hydrogen SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_error_no_hydrogen_implicit SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_warning_no_hydrogen_force SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-N- N ] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-CA- CA ] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-CAT- CAT] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-N1- N1 ] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-CE2- CE2] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-C12- C12] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-HD12-HD12] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[names-C123-C123] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[altLocs-A-A] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[chainIDs-B-B] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[icodes-C-C] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[occupancies-0.5-0.5] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[resnames-LIG-LIG] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[resids-123-123] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[segindices-1-1] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_add_mda_attr_to_rdkit[tempfactors-0.8-0.8] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[0] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[10] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_other_attributes[42] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname ALA] SKIPPED [ 6%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_index_property[resname PRO and segid A] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_coordinates SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_assign_stereochemistry SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_trajectory_coords SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_nan_coords SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_cache SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitConverter::test_sanitize_fail_warning SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C(-[H])(-[H])(-[H])-[H]-C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[C](-[H])(-[H])-[C](-[H])-[H]-C=C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[C]1(-[H])-[C](-[H])-[C](-[H])-[C](-[H])-[C](-[H])-[C]1(-[H])-c1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C-[C](-[H])-[O]-C(=O)C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[H]-[C](-[O])-[N](-[H])-[H]-C(=O)N] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[N]-[C]-[H]-N#C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[C-[C](-[O]-[H])-[O]-CC(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O]-[H])(-[O]-[H])-[O]-P(O)(O)(O)=O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O]-[H])(-[O])-[O]-P([O-])(O)(O)=O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O]-[H])(-[O])(-[O])-[O]-P([O-])([O-])(O)=O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[P](-[O])(-[O])(-[O])-[O]-P([O-])([O-])([O-])=O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[H]-[O]-[N]-[O]-ON=O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_bond_orders[[N]-[C]-[O]-N#C[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[C](-[H])(-[H])(-[H])-[O]-4--1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[N]-[C]-[O]-2--1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[[N](-[H])(-[H])(-[H])-[H]-0-1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_infer_charges[C-[C](-[O])-[O]-3--1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O]-[H])(-[O]-[H])(-[O])-[O]-S(=O)(=O)(O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O]-[H])(-[O])(-[O])-[O]-S(=O)(=O)([O-])O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[S](-[O])(-[O])(-[O])-[O]-S(=O)(=O)([O-])[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C-[N](-[H])-[C](-[N](-[H])-[H])-[N](-[H])-[H]-CNC(N)=[N+](-[H])-[H]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[O]-[C](-[H])-[C](-[H])-[H]-C([O-])=C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C-[N](-[O])-[O]-C[N+](=O)[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C(-[N](-[O])-[O])-[N](-[O])-[O]-C([N+](=O)[O-])[N+](=O)[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[C-[N](-[O])-[O].C-[N](-[O])-[O]-C[N+](=O)[O-].C[N+](=O)[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[C-](=O)-C-[C](=O)-C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[H]-[N-]-C-[H]-[N]-C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[O]-[C]1-[C](-[H])-[C](-[H])-[C](-[H])-[C](-[H])-[C](-[H])1-[O-]c1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[O]-[C]1-[C](-[H])-[C](-[H])-[C](-[H])-[C]1-[O]-[O-]C1=CC=CC1=O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[H]-[C]-[C]-[C](-[H])-[C](-[H])-[H]-C#CC=C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_standardize_patterns[[H]-[C]-[C]-[C]-[C]-[H]-C#CC#C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-42-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value1-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value2-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value3-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value4-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value5-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value6-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value7-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[index-value8-GetIntProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[charge-4.2-GetDoubleProp0] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[charge-value10-GetDoubleProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[charge-4.2-GetDoubleProp1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_set_atom_property[type-C.3-GetProp] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ignore_prop SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_transfer_properties[c1ccc(cc1)-c1ccccc1-c1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_transfer_properties[c1cc[nH]c1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_transfer_properties[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc(cc1)-c1ccccc1-c1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1cc[nH]c1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc(cc1)-c1ccc(-c2ccccc2)c(-c2ccccc2)c1-c1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1ccc2c(c1)c1ccccc1c1ccccc1c1ccccc1c1ccccc21] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1csc(c1)-c1ccoc1-c1cc[nH]c1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C1=C2C(=NC=N1)N=CN2] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CN1C=NC(=C1SC2=NC=NC3=C2NC=N3)[N+](=O)[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1c[nH]c(c1)-c1ccc(s1)-c1ccoc1-c1c[nH]cc1-c1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C=CC=CC=CC=CC=CC=C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCCCCC([NH3+])C(=O)[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C=CC1=C(C)CCCC1(C)C)=CC=CC(C)=CC=[NH+]C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C#CC=C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=CNC=N1)N)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=CN=CN1)N)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CCOC(=O)c1cc2cc(C(=O)O)ccc2[nH]1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-][n+]1cccnc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[PH4+]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1nc[nH]n1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(=O)C=C(C)N] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)=CC=C[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=S(C)(C)=NC] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1ccc2c3ncn(Cc4ccco4)c(O)c-3nc2c1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CCCC/C=C/C#CC#CCCCCCCCC(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[c1c2c(=O)n3cccc(C)c3nc2n(C)c(=N)c1C(=O)NCc1cnccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N#Cc1c[nH]c(C(=O)NC(=O)c2cc[n+]([O-])cc2)n1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@@H](Oc1cc(F)ccc1Nc1ncnc2cc(N=S3(=O)CCC3)cc(F)c12)C(=O)NCC#N] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-][n+]1onc2ccccc21] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1cc[n+](CC[n+]2ccc(C)cc2)cc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]c1ccccc1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]C=CC=CCC=CC=[N+](C)C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C=[N+](-[O-])-C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C-[N-]-C(=O)C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCC(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC[C@H](C)[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)C[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=C(O)[C@@H]1CCCN1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1ccccc1)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1c[nH]c2ccccc12)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1ccc(O)cc1)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CC(=O)O)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CCC(=O)O)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N=C(N)NCCC[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](Cc1c[nH]cn1)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NCCCC[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CO)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[C@@H](O)[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N[C@@H](CS)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CSCC[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NC(=O)C[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[NC(=O)CC[C@H](N)C(=O)O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1ncnc2c1ncn2[C@H]1C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1cn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]c1=O] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[O=c1ccn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1ccn([C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)n1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Nc1nc2c(ncn2[C@H]2C[C@H](OP(=O)(O)O)[C@@H](COP(=O)(O)O)O2)c(=O)[nH]1] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)NS(C)(=O)=Nc1ccc(-c2ccc(-c3nc4[nH]c(O[C@@H]5CO[C@@H]6[C@H](O)CO[C@H]56)nc4cc3Cl)cc2)cc1 CHEMBL4111464] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1c2ccccc2c(C(=O)O)c2[nH]c3ccc(Br)cc3c21 CHEMBL511591] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[C[n+]1ccccc1-c1ccc(NC(=O)c2ccc(C(=O)Nc3ccc(-c4cccc[n+]4C)cc3)cc2)cc1 CHEMBL3230729] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[Cc1ccc(/C(O)=C(/C([S-])=NCc2ccccc2)[n+]2cccc(CO)c2)cc1[N+](=O)[O-] CHEMBL1596426] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[CC(C)(O)c1cc2c(cc1C(C)(C)O)-c1ccccc1-2 CHEMBL1990966] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[[O-]/N=C1/c2ccccc2-c2nc3ccc(C(F)(F)F)cc3nc21 CHEMBL4557878] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant[N#Cc1c[nH]c(C(=O)Nc2ccc(-c3cccc[n+]3[O-])cc2C2=CCCCC2)n1 CHEMBL1172116] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[N+]#N] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-N=[N+]=[N-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[O+]=C] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_order_independant_issue_3339[C-[N+]#[C-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_warn_conjugated_max_iter SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Li+]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Na+]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[K+]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Rb+]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ag+]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cs+]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Mg+2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ca+2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cu+2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Zn+2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Sr+2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Ba+2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Al+3]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Fe+2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Cl-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[O-2]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_ions[[Na+].[Cl-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_reorder_atoms[O=C([C@H](CC1=C[NH1+]=CN1)[NH3+])[O-]] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_reorder_atoms[O=S(C)(C)=NC] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_pdb_names SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F/C(Br)=C(Cl)/I] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F\\C(Br)=C(Cl)\\I] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_bond_stereo_not_stereoany[F-C(Br)=C(Cl)-I] SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/converters/test_rdkit.py::TestRDKitFunctions::test_atom_sorter SKIPPED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_reader PASSED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_universe_inpcrd PASSED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py::TestINPCRDReader::test_universe_restrt PASSED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_regular_repr PASSED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_truncated_repr PASSED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_next_trajectory PASSED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_n_atoms PASSED [ 7%] 1132s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_n_frames PASSED [ 7%] 1133s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_iteration PASSED [ 7%] 1133s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_jump_lastframe_trajectory PASSED [ 7%] 1133s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_slice_trajectory PASSED [ 7%] 1133s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_full_slice PASSED [ 7%] 1133s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_frame_numbering PASSED [ 7%] 1134s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_next_after_frame_numbering PASSED [ 7%] 1134s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_frame PASSED [ 7%] 1134s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_time PASSED [ 7%] 1134s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_write_dcd PASSED [ 7%] 1136s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_iteration PASSED [ 7%] 1136s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_slice PASSED [ 7%] 1136s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transform_switch PASSED [ 7%] 1137s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReader::test_transfrom_rewind PASSED [ 7%] 1137s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderCommonDt::test_time PASSED [ 7%] 1138s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_format_tuples PASSED [ 7%] 1138s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_format_lammps PASSED [ 7%] 1139s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_format_tuples_and_format PASSED [ 7%] 1140s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_one_format_tuple PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderFormats::test_set_all_formats PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info0-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info0-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info1-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info1-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info2-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info2-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info3-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info3-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info4-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info4-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info5-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info5-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info6-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info6-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info7-xtc] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_order[seq_info7-trr] PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_start_frames PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_missing PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_warning PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_interleaving_error PASSED [ 7%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_easy_trigger_warning PASSED [ 8%] 1141s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_single_frames PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_mixed_filetypes PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::TestChainReaderContinuous::test_unsupported_filetypes PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l0-ref0] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l1-ref1] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l2-ref2] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l3-ref3] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_multilevel_arg_sort[l4-ref4] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l0-ref0] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l1-ref1] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l2-ref2] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l3-ref3] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l4-ref4] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l5-ref5] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l6-ref6] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l7-ref7] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l8-ref8] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l9-ref9] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l10-ref10] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l11-ref11] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l12-ref12] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l13-ref13] PASSED [ 8%] 1142s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_filter_times[l14-ref14] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_issue_4008 PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_chainreader.py::test_issue_3349 PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader0] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader1] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader2] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader3] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader4] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader5] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader6] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader7] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader8] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader9] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader10] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader11] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader12] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader13] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader14] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader15] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader16] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader17] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader18] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader19] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader20] PASSED [ 8%] 1143s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader21] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader22] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader23] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader24] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader25] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_n_atoms[ref_reader26] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader0] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader1] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader2] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader3] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader4] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader5] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader6] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader7] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader8] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader9] PASSED [ 8%] 1145s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader10] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader11] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader12] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader13] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader14] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader15] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader16] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader17] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader18] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader19] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader20] PASSED [ 8%] 1146s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader21] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader22] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader23] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader24] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader25] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_filename[ref_reader26] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args0] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args1] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args2] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args3] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args4] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args5] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args6] PASSED [ 8%] 1147s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args7] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args8] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args9] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args10] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args11] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args12] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args13] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args14] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args15] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args16] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args17] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args18] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args19] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args20] PASSED [ 8%] 1148s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args21] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args22] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args23] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args24] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args25] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_copied_extra_attributes[ref_reader_extra_args26] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader0] SKIPPED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader1] SKIPPED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader2] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader3] SKIPPED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader4] SKIPPED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader5] PASSED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader6] SKIPPED [ 8%] 1149s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader7] PASSED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader8] SKIPPED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader9] SKIPPED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader10] PASSED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader11] SKIPPED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader12] SKIPPED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader13] SKIPPED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader14] PASSED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader15] PASSED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader16] PASSED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader17] PASSED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader18] SKIPPED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader19] SKIPPED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader20] PASSED [ 8%] 1150s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader21] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader22] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader23] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader24] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader25] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_independent_iteration[ref_reader26] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader0] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader1] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader2] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader3] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader4] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader5] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader6] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader7] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader8] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader9] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader10] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader11] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader12] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader13] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader14] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader15] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader16] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader17] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader18] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader19] SKIPPED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader20] PASSED [ 8%] 1152s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader21] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader22] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader23] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader24] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader25] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_frame_maintained[ref_reader26] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader0] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader1] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader2] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader3] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader4] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader5] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader6] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader7] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader8] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader9] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader10] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader11] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader12] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader13] SKIPPED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader14] PASSED [ 8%] 1155s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader15] PASSED [ 8%] 1156s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader16] PASSED [ 8%] 1156s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader17] PASSED [ 8%] 1156s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader18] SKIPPED [ 8%] 1156s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader19] SKIPPED [ 8%] 1156s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader20] PASSED [ 8%] 1156s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader21] SKIPPED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader22] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader23] SKIPPED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader24] SKIPPED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader25] SKIPPED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_reader_initial_next[ref_reader26] SKIPPED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader0] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader1] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader2] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader3] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader4] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader5] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader6] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader7] PASSED [ 8%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader8] PASSED [ 9%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader9] PASSED [ 9%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader10] PASSED [ 9%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader11] PASSED [ 9%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader12] PASSED [ 9%] 1158s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader13] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader14] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader15] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader16] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader17] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader18] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader19] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader20] PASSED [ 9%] 1159s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader21] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader22] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader23] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader24] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader25] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_timestep_copied[ref_reader26] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader0] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader1] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader2] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader3] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader4] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader5] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader6] PASSED [ 9%] 1160s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader7] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader8] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader9] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader10] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader11] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader12] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader13] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader14] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader15] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader16] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader17] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader18] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader19] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader20] PASSED [ 9%] 1161s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader21] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader22] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader23] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader24] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader25] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_positions_share_memory[ref_reader26] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_no_pyedr PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_copying.py::test_copy_with_auxiliary_pyedr SKIPPED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.bz2] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_atoms[test.crd.gz] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_roundtrip PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriter::test_write_EXT_read PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resnames] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[resids] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[names] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_warns[tempfactors] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resnames] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[resids] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[names] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_crd.py::TestCRDWriterMissingAttrs::test_write[tempfactors] PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_atoms PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_n_frames PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_frame PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_double_close PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_1 PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_writer_2 PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_dt PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_ts_dt_matches_reader PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_total_time PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_first_dimensions PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_changing_dimensions PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_volume PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_same_auxname_raises_ValueError PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_auxiliary PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_auxiliary PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_get_aux_attribute PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_as_aux_cutoff PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_reload_auxiliaries_from_description PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_stop_iter PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_iter PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_2iter PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_slice PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_switch_frame PASSED [ 9%] 1163s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformation_rewind PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_transformations_copy PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_add_another_transformations_raises_ValueError PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_reader PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_collect_all_same XFAIL [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[fac] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[fca] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[afc] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[acf] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[caf] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_shape[cfa] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice0] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice1] SKIPPED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_values[slice2] SKIPPED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_shape[index 1] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_shape[index 2] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_empty_asel PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_empty_atomgroup PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_asel_warns_deprecation PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_atomgroup PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_timeseries_atomgroup_asel_mutex PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_last_frame PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_go_over_last_frame PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_jump PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_frame_jump_issue1942 PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_next_gives_second_frame PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_reopen PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_rename_aux PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_as_aux_highf PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_as_aux_lowf PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_rewinds[indexed] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_rewinds[sliced] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_iter_rewinds[all] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_next_ts_reader PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_pickle_last_ts_reader PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_empty_dcd PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_with_statement PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDReader::test_set_time PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[0] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[1] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[2] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[37] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_istart[None] PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_different_box PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_trajectory_atomgroup PASSED [ 9%] 1164s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_trajectory_universe PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_selection PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_none PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_no_container PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::TestDCDWriter::test_write_not_changing_ts PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_random_unitcell PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_empty_dimension_warning PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_rewind PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_next PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_jump_last_frame PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_slice[5-17-3] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_slice[20-5--1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_array_like[list] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_array_like[array] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_list_indices[indices0] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_list_indices[indices1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice0-98] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice1-98] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice2-98] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice3-98] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice4-98] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice5-2] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice6-10] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice7-8] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice8-1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice9-0] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice10-1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice11-1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice12-2] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice13-1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice14-1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice15-2] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice16-4] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice17-3] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_slices[slice18-2] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[fac-shape0] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[fca-shape1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[afc-shape2] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[acf-shape3] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[caf-shape4] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_order[cfa-shape5] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_atomindices[indices0] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_atomindices[indices1] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_timeseries_atomindices[indices2] PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_reader_set_dt PASSED [ 9%] 1165s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_dt[dcd-4] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_dt[xtc-3] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_DCDWriter_default[istart-0] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_DCDWriter_default[nsavc-1] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_other_writer[dcd-5] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_other_writer[xtc-2] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_single_frame PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_no_natoms PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_writer_trajectory_no_natoms PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_read_unitcell_triclinic[RefCHARMMtriclinicDCD] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_read_unitcell_triclinic[RefNAMDtriclinicDCD] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_unitcell_triclinic[RefCHARMMtriclinicDCD] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_write_unitcell_triclinic[RefNAMDtriclinicDCD] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ncdf2dcd_unitcell PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ncdf2dcd_coords PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe0] PASSED [ 9%] 1166s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe1] PASSED [ 9%] 1167s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe2] PASSED [ 9%] 1167s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_ts_time[universe3] PASSED [ 9%] 1167s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_pathlib PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dcd.py::test_large_dcdfile SKIPPED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_read_unitcell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_positions PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_velocities PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_forces PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader::test_read PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_read_unitcell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_positions PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_velocities PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigOrder::test_forces PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_positions PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_read_unitcell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_velocities PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigMinimal::test_forces PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_names PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_pos PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_vel PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_for PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReader2::test_number PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_names PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_pos PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_number PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_vel PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestConfigReaderMinimal2::test_for PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_len PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_getting PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_slicing PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_slicing_2 PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_position PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_velocity PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_force PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistory::test_unitcell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_len PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_getting PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_slicing PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_slicing_2 PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_position PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_velocity PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_force PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryOrder::test_unitcell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_len PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_getting PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_slicing PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_slicing_2 PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_position PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_velocity PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_force PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimal::test_unitcell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_len PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_getting PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_slicing PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_slicing_2 PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_position PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_unitcell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_velocity PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dlpoly.py::TestDLPolyHistoryMinimalCell::test_force PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_global_cell PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_velocities PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_number_of_coords PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_coords_atom_0 PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_n_frames PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_time PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame PASSED [ 10%] 1167s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame_index_0 PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_dms.py::TestDMSReader::test_frame_index_1_raises_IndexError PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_single_file PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_uses_FHIAIMSReader PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_dimensions PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_n_atoms PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_fhiaims_positions PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_n_frames PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_time PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_missing_periodicity PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_relative_positions_no_box PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_missing_velocity PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_velocity_wrong_position PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_bad_input_wrong_input_line PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_good_input_with_velocity PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSReader::test_mixed_units PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_different_box PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_trajectory_atomgroup PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_trajectory_universe PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_selection PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_none PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_no_container PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_write_not_changing_ts PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_with_velocity PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_no_atom_names PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_fhiaims.py::TestFHIAIMSWriter::test_writer_with_n_atoms_none PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_n_frames PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_random_access PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_rewind PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_next PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_dt PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReader::test_step5distances PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_n_frames PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_random_access PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_rewind PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_next PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_dt PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderSO::test_step5distances PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_n_frames PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_random_access PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_rewind PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_next PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_dt PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gms.py::TestGMSReaderASS::test_step5distances PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_load_gro PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_coordinates PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_distances PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_selection PASSED [ 10%] 1168s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderOld::test_unitcell PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_coordinates PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_distances PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_unitcell PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversionOld::test_volume PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_n_atoms PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_n_frames PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_first_frame PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_double_close PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_writer_1 PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_writer_2 PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_dt PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_ts_dt_matches_reader PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_total_time PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_first_dimensions PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_changing_dimensions PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_volume PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_iter PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_add_same_auxname_raises_ValueError PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_remove_auxiliary PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_iter_auxiliary PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_get_aux_attribute PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_iter_as_aux_cutoff PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_reload_auxiliaries_from_description PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_stop_iter PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_iter PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_2iter PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_slice PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_switch_frame PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformation_rewind PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_transformations_copy PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_add_another_transformations_raises_ValueError PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_pickle_reader PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_frame_collect_all_same PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[fac] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[fca] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[afc] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[acf] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[caf] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_shape[cfa] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_values[slice0] SKIPPED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_values[slice1] SKIPPED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_values[slice2] SKIPPED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_shape[index 1] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_shape[index 2] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_empty_asel PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_empty_atomgroup PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_asel_warns_deprecation PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_atomgroup PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_timeseries_atomgroup_asel_mutex PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_time PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReader::test_full_slice PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_different_box PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_trajectory_atomgroup PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_trajectory_universe PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_selection PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_none PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_no_container PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_not_changing_ts PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_velocities PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resnames PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_write_no_resids PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_writer_no_atom_names PASSED [ 10%] 1169s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_min PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_max PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriter::test_check_coordinate_limits_max_noconversion PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_n_atoms PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_n_frames PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_first_frame PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_double_close PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_writer_1 PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_writer_2 PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_dt PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_ts_dt_matches_reader PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_total_time PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_first_dimensions PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_changing_dimensions PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_volume PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_iter PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_add_same_auxname_raises_ValueError PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_remove_auxiliary PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 10%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_iter_auxiliary PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_get_aux_attribute PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_iter_as_aux_cutoff PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_reload_auxiliaries_from_description PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_stop_iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_2iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_slice PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_switch_frame PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformation_rewind PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_transformations_copy PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_add_another_transformations_raises_ValueError PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_pickle_reader PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_frame_collect_all_same PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[fac] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[fca] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[afc] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[acf] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[caf] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_shape[cfa] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_values[slice0] SKIPPED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_values[slice1] SKIPPED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_values[slice2] SKIPPED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_shape[index 1] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_shape[index 2] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_shape[index 1 to 3] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_empty_asel PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_empty_atomgroup PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_asel_warns_deprecation PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_atomgroup PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderNoConversion::test_timeseries_atomgroup_asel_mutex PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_different_box PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_trajectory_atomgroup PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_trajectory_universe PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_selection PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_none PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_no_container PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterNoConversion::test_write_not_changing_ts PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_n_atoms PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_n_frames PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_first_frame PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_double_close PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_writer_1 PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_writer_2 PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_dt PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_ts_dt_matches_reader PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_total_time PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_first_dimensions PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_changing_dimensions PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_volume PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_add_same_auxname_raises_ValueError PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_remove_auxiliary PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_iter_auxiliary PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_get_aux_attribute PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_iter_as_aux_cutoff PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_reload_auxiliaries_from_description PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_stop_iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_2iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_slice PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_switch_frame PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformation_rewind PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_transformations_copy PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_add_another_transformations_raises_ValueError PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_pickle_reader PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_frame_collect_all_same PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[fac] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[fca] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[afc] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[acf] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[caf] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_shape[cfa] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_values[slice0] SKIPPED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_values[slice1] SKIPPED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_values[slice2] SKIPPED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_shape[index 1] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_shape[index 2] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_shape[index 1 to 3] PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_empty_asel PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_empty_atomgroup PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_asel_warns_deprecation PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_atomgroup PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROReaderIncompleteVelocities::test_timeseries_atomgroup_asel_mutex PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_different_box PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_trajectory_atomgroup PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_trajectory_universe PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_selection PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_none PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_no_container PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROWriterIncompleteVelocities::test_write_not_changing_ts PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_n_atoms PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_n_frames PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_first_frame PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_double_close PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_writer_1 PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_writer_2 PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_dt PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_ts_dt_matches_reader PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_total_time PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_first_dimensions PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_changing_dimensions PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_volume PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_add_same_auxname_raises_ValueError PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_auxiliary PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter_auxiliary PASSED [ 11%] 1170s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_get_aux_attribute PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_iter_as_aux_cutoff PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_reload_auxiliaries_from_description PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_stop_iter PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_iter PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_2iter PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_slice PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_switch_frame PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformation_rewind PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_transformations_copy PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_add_another_transformations_raises_ValueError PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_pickle_reader PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_frame_collect_all_same PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[fac] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[fca] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[afc] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[acf] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[caf] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_shape[cfa] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_values[slice0] SKIPPED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_values[slice1] SKIPPED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_values[slice2] SKIPPED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 1] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 2] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_empty_asel PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_empty_atomgroup PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_asel_warns_deprecation PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_atomgroup PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Reader::test_timeseries_atomgroup_asel_mutex PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_different_box PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_trajectory_atomgroup PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_trajectory_universe PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_selection PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_none PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_no_container PASSED [ 11%] 1171s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROBZ2Writer::test_write_not_changing_ts PASSED [ 11%] 1172s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_different_box PASSED [ 11%] 1178s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_trajectory_atomgroup PASSED [ 11%] 1183s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_trajectory_universe PASSED [ 11%] 1186s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_selection PASSED [ 11%] 1186s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_none PASSED [ 11%] 1186s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_no_container PASSED [ 11%] 1189s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_write_not_changing_ts PASSED [ 11%] 1193s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_writer_large PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGROLargeWriter::test_writer_large_residue_count PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_growriter_resid_truncation PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_growriter_resid_true PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_growriter_resid_false PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_writer_resid_false PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::TestGrowriterReindex::test_writer_resid_true PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_multiframe_gro PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_huge_box_gro PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[1] PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[2] PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[4] PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[5] PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[6] PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[7] PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_bad_box[8] PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gro.py::test_gro_empty_box_write_read PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gsd.py::test_no_gsd_u_raises SKIPPED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gsd.py::test_gsd_reader_raises SKIPPED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_positions PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_n_frames PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_dimensions PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_gsd.py::TestGSDReader::test_gsd_data_step PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_n_atoms PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_n_frames PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_first_frame PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_double_close PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_dt PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_ts_dt_matches_reader PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_total_time PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_first_dimensions PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_changing_dimensions PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_volume PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_add_same_auxname_raises_ValueError PASSED [ 11%] 1195s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_remove_auxiliary PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_auxiliary PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_aux_attribute PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_as_aux_cutoff PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_reload_auxiliaries_from_description PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_stop_iter PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_iter PASSED [ 11%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_2iter PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_slice PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_switch_frame PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformation_rewind PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_transformations_copy PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_add_another_transformations_raises_ValueError PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_reader PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_frame_collect_all_same PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[fac] PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[fca] PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[afc] PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[acf] PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[caf] PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_shape[cfa] PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice0] PASSED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice1] SKIPPED [ 12%] 1196s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_values[slice2] SKIPPED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 1] PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 2] PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_shape[index 1 to 3] PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_empty_asel PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_empty_atomgroup PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_asel_warns_deprecation PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_atomgroup PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_timeseries_atomgroup_asel_mutex PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_last_frame PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_go_over_last_frame PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_frame_jump PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_frame_jump_issue1942 PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_next_gives_second_frame PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_reopen PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_rename_aux PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_as_aux_highf PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_as_aux_lowf PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_rewinds[indexed] PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_rewinds[sliced] PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_iter_rewinds[all] PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_next_ts_reader PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_pickle_last_ts_reader PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_1 PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_get_writer_2 PASSED [ 12%] 1197s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderBaseAPI::test_copying PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_different_box PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_selection PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_none PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_no_container PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_not_changing_ts PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_trajectory_atomgroup PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterBaseAPI::test_write_trajectory_universe PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_n_frames PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_positions PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_velocities PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_forces PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_dimensions PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_h5md_data_step PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_rewind PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_next PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_jump_last_frame PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[0-2-1] PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_slice[1-2-1] PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[list] PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_array_like[array] PASSED [ 12%] 1198s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_list_indices PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[position-positions] PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[velocity-velocities] PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_group[force-forces] PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/value] PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[position/time] PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[velocity/value] PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_unknown_unit[force/value] PASSED [ 12%] 1199s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_length_unit_from_box PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[position] PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[velocity] PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_changing_n_atoms[force] PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_2D_box PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_box_vector PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_box PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_groups PASSED [ 12%] 1200s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_convert_units PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_no_units_but_convert_units_true_error PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_filestream XFAIL [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_wrong_driver PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_open_with_driver PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[velocity-force] PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-force] PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms[position-velocity] PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithRealTrajectory::test_parse_n_atoms_error PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0-ValueError-H5MDWriter: no atoms in output trajectory] PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_n_atoms_errors[0.5-OSError-H5MDWriter: Timestep does not have] PASSED [ 12%] 1201s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_chunk_error PASSED [ 12%] 1202s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[None] PASSED [ 12%] 1202s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_dimensions[0] PASSED [ 12%] 1202s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_not_monotonic PASSED [ 12%] 1203s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_step_from_frame PASSED [ 12%] 1203s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_has_property PASSED [ 12%] 1203s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-False] PASSED [ 12%] 1204s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-False] PASSED [ 12%] 1204s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-False-True] PASSED [ 12%] 1204s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[True-True-True] PASSED [ 12%] 1205s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-True-True] PASSED [ 12%] 1205s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-True] PASSED [ 12%] 1205s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_trajectory[False-False-False] PASSED [ 12%] 1205s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_AtomGroup_with PASSED [ 12%] 1206s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[None-1] PASSED [ 12%] 1206s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_ag_write[all-3] PASSED [ 12%] 1206s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[fs-Angstrom-Angstrom/ps-kJ/(mol*Angstrom)] PASSED [ 12%] 1206s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[s-pm-m/s-Newton] PASSED [ 12%] 1207s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[ps-fm-Angstrom/fs-kcal/(mol*Angstrom)] PASSED [ 12%] 1207s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_custom_units[AKMA-nm-Angstrom/AKMA-kcal/(mol*Angstrom)] PASSED [ 12%] 1207s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[imaginary time-None-None-None] PASSED [ 12%] 1207s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-c-None] PASSED [ 12%] 1207s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-None-None-HUGE FORCE] PASSED [ 12%] 1208s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_bad_units[None-lightyear-None-None] PASSED [ 12%] 1208s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_true PASSED [ 12%] 1208s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_no_units_w_convert_false PASSED [ 12%] 1208s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[True] PASSED [ 12%] 1209s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_convert_units[False] PASSED [ 12%] 1209s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks0] PASSED [ 12%] 1209s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks1] PASSED [ 12%] 1210s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks[chunks2] PASSED [ 12%] 1211s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_chunks_with_nframes PASSED [ 12%] 1211s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous1 PASSED [ 12%] 1211s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_contiguous2 PASSED [ 12%] 1212s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-1] PASSED [ 12%] 1212s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[gzip-9] PASSED [ 12%] 1212s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_compression[lzf-None] PASSED [ 12%] 1213s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[core] PASSED [ 12%] 1213s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_write_with_drivers[stdio] PASSED [ 12%] 1213s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_parallel_disabled PASSED [ 12%] 1213s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDWriterWithRealTrajectory::test_timestep_not_modified_by_writer PASSED [ 12%] 1213s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_reader_no_h5py PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5PYNotInstalled::test_writer_no_h5py PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithObservables::test_read_h5md_issue4598 PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_h5md.py::TestH5MDReaderWithObservables::test_read_h5md_malformed PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datareader_ValueError PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_n_atoms PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_coords PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_velos PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_dimensions PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_singleframe PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_seek_2 PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsData_Coords::test_iter PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_n_atoms PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_coords PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_velos PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_dimensions PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_singleframe PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_seek_2 PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDataMini_Coords::test_iter PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_vel_force PASSED [ 12%] 1214s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_image_wrap PASSED [ 12%] 1215s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_unwrap_no_image PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-bonds] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-angles] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-dihedrals] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-impropers] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-masses] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-charges] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-velocities] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/datatest.data-positions] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-bonds] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-angles] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-dihedrals] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-impropers] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-masses] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-charges] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-velocities] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/mini.data-positions] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] 1217s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-bonds] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-angles] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-dihedrals] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-impropers] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 12%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-masses] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-charges] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-velocities] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/cnt-hexagonal-class1.data-positions] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-bonds] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-angles] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-dihedrals] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_atoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-impropers] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_dimensions[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms_types[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-masses] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-charges] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-velocities] PASSED [ 13%] 1218s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_numerical_attrs[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/lammps/hydrogen-class1.data-positions] PASSED [ 13%] 1220s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag0] PASSED [ 13%] 1220s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag1] PASSED [ 13%] 1220s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag2] PASSED [ 13%] 1220s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag3] PASSED [ 13%] 1222s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_molecule_tag::test_molecule_tag[LAMMPSDATAWriter_molecule_tag4] PASSED [ 13%] 1222s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data] PASSED [ 13%] 1222s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.bz2] PASSED [ 13%] 1222s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_datawriter_universe[out.data.gz] PASSED [ 13%] 1223s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[masses] PASSED [ 13%] 1223s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[charges] PASSED [ 13%] 1223s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[velocities] PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_Writer_atoms[positions] PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_bonds PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDATAWriter_data_partial::test_n_angles PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_Reader_is_LAMMPS PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_atoms PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_n_frames PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_dimensions PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_dt PASSED [ 13%] 1224s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_Timestep_time PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_LAMMPSDCDReader_set_dt PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_time_unit PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDReader::test_wrong_unit PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer_is_LAMMPS PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_Writer PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter_is_LAMMPS PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriter::test_OtherWriter PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_Writer_is_LAMMPS PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_open PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_time_unit PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLAMMPSDCDWriterClass::test_wrong_unit PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_triclinicness PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_masses PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_no_types PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestDataWriterErrors::test_write_non_numerical_types PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[ascii] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[bz2] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_n_atoms[gzip] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[ascii] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[bz2] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_length[gzip] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[ascii] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[bz2] PASSED [ 13%] 1225s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_seeking[gzip] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[ascii] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[bz2] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_boxsize[gzip] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[ascii] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[bz2] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_atom_reordering[gzip] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_true-fields0] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_single-fields1] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_multiple-fields2] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_wrong_format_additional_colums[u_additional_columns_wrong_format] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsDumpReader::test_warning[u_additional_columns_not_present] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unscaled] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[unwrapped] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_absent_convention_fails[scaled_unwrapped] PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_incorrect_convention_fails PASSED [ 13%] 1226s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[auto-unscaled] PASSED [ 13%] 1227s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unscaled-unscaled] PASSED [ 13%] 1228s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled-scaled] PASSED [ 13%] 1228s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[unwrapped-unwrapped] PASSED [ 13%] 1229s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_open_all_convention[scaled_unwrapped-scaled_unwrapped] PASSED [ 13%] 1229s testsuite/MDAnalysisTests/coordinates/test_lammps.py::test_no_coordinate_info PASSED [ 13%] 1231s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unscaled_reference PASSED [ 13%] 1234s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_reference PASSED [ 13%] 1237s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_reference PASSED [ 13%] 1240s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_scaled_unscaled_match PASSED [ 13%] 1244s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_unwrapped_scaled_unwrapped_match PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestCoordinateMatches::test_auto_is_unscaled_match PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_lammps.py::TestLammpsTriclinic::test_box PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_atoms PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_n_frames PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_frame PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_double_close PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_dt PASSED [ 13%] 1248s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_ts_dt_matches_reader PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_total_time PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_first_dimensions PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_changing_dimensions PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_volume PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_same_auxname_raises_ValueError PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_auxiliary PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_auxiliary PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_aux_attribute PASSED [ 13%] 1249s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_cutoff PASSED [ 13%] 1250s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reload_auxiliaries_from_description PASSED [ 13%] 1250s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_stop_iter PASSED [ 13%] 1250s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_iter PASSED [ 13%] 1250s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_2iter PASSED [ 13%] 1251s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_slice PASSED [ 13%] 1251s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_switch_frame PASSED [ 13%] 1251s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformation_rewind PASSED [ 13%] 1252s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_transformations_copy PASSED [ 13%] 1252s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_add_another_transformations_raises_ValueError PASSED [ 13%] 1252s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_reader PASSED [ 13%] 1252s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_collect_all_same XFAIL [ 13%] 1252s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[fac] PASSED [ 13%] 1252s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[fca] PASSED [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[afc] PASSED [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[acf] PASSED [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[caf] PASSED [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_shape[cfa] PASSED [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice0] XFAIL [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice1] XFAIL [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_values[slice2] XFAIL [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 1] PASSED [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 2] PASSED [ 13%] 1253s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_empty_asel PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_empty_atomgroup PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_last_frame PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_go_over_last_frame PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_jump PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_frame_jump_issue1942 PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_next_gives_second_frame PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_reopen PASSED [ 13%] 1254s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_rename_aux PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_highf PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_as_aux_lowf PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[indexed] PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[sliced] PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iter_rewinds[all] PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_next_ts_reader PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_pickle_last_ts_reader PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_transefer_to_memory PASSED [ 13%] 1255s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_filename_array PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_default_memory_layout PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_iteration PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_afc PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fac PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_cfa PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_acf PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_fca PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_extract_array_caf PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_skip1 PASSED [ 13%] 1256s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_skip10 PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_subarray_view PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view_from_universe_atoms PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_view_from_select_all PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_noview PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_repr PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_1 PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_get_writer_2 PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_float32 PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_position_assignation PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_warns_deprecation PASSED [ 13%] 1257s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_asel_warns_deprecation PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_atomgroup PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReader::test_timeseries_atomgroup_asel_mutex PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[2d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[2d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[3d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_velocities[3d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[2d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[2d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[3d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_forces[3d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-2d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-2d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-3d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[2d-3d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-2d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-2d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-3d-2d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_both[3d-3d-3d] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[2d-velocities] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[2d-forces] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[3d-velocities] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderVelsForces::test_wrongshape[3d-forces] PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_single_box PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_varying_box PASSED [ 13%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_wrong_length PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestDimensions::test_wrong_shape PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[positions] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[velocities] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[forces] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_copying[dimensions] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[positions] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[velocities] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[forces] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_attr_set[dimensions] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[velocities] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[forces] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_memory.py::TestMemoryReaderModifications::test_non_numpy_arr[dimensions] PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_read_frame_size PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_read_positions PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_velocities PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_forces PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReader::test_len PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_read_frame_size PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_read_positions PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_velocities PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_forces PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::TestMMTFReaderGZ::test_len PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::test_dimensionless PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mmtf.py::test_deprecation PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_read PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_read_statusbit PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write_selection PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_write_in_loop PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_broken_molecule PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_comments_header PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2::test_no_bonds PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_jump_lastframe_traj PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_jump_traj PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_n_frames PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_next_traj PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_reverse_traj PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_rewind_traj PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMol2_traj::test_slice_traj PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_load PASSED [ 14%] 1258s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_universe PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_mol2.py::TestMOL2NoSubstructure::test_write_nostructure PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_write_NIE PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_multi_write PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_mol2.py::test_mol2_universe_write PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_coordinates PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_distances PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_dt PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_frame PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_frame_index_0 PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_frame_index_1_raises_IndexError PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_full_slice PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_get_writer_from_reader PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_last_slice PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_load_file PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_n_atoms PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_n_frames PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_numres PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_parse_n_atoms PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_pickle_singleframe_reader PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::TestNAMDBINReader::test_time PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_different_box PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_trajectory_atomgroup PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_trajectory_universe PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_selection PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_none PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_no_container PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_namdbin.py::NAMDBINWriter::test_write_not_changing_ts PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_load_prm PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_n_atoms PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_n_frames PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_periodic PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_amber_proteinselection PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_sum_centres_of_geometry PASSED [ 14%] 1259s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_initial_frame_is_0 PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_starts_with_first_frame PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_rewind PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_full_slice PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_random_access PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_slice_iteration PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_metadata PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_dt PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_get_writer PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_get_writer_custom_n_atoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_wrong_natoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_read_on_closed PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader::test_mmap_kwarg PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_load_prm PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_n_atoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_n_frames PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_periodic PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_amber_proteinselection PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_sum_centres_of_geometry PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_initial_frame_is_0 PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_starts_with_first_frame PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_rewind PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_full_slice PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_random_access PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_slice_iteration PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_metadata PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_dt PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_get_writer PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_get_writer_custom_n_atoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_wrong_natoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_read_on_closed PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_None::test_mmap_kwarg PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_load_prm PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_n_atoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_n_frames PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_periodic PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_amber_proteinselection PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_sum_centres_of_geometry PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_initial_frame_is_0 PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_starts_with_first_frame PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_rewind PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_full_slice PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_random_access PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_slice_iteration PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_metadata PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_dt PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_get_writer PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_get_writer_custom_n_atoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_wrong_natoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_read_on_closed PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_True::test_mmap_kwarg PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_load_prm PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_n_atoms PASSED [ 14%] 1260s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_n_frames PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_periodic PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_amber_proteinselection PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_sum_centres_of_geometry PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_initial_frame_is_0 PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_starts_with_first_frame PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_rewind PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_full_slice PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_random_access PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_slice_iteration PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_metadata PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_dt PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_get_writer PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_get_writer_custom_n_atoms PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_wrong_natoms PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_read_on_closed PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader_mmap_False::test_mmap_kwarg PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_load_prm PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_n_atoms PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_n_frames PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_periodic PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_amber_proteinselection PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_sum_centres_of_geometry PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_initial_frame_is_0 PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_starts_with_first_frame PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_rewind PASSED [ 14%] 1261s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_full_slice PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_random_access PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_slice_iteration PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_metadata PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_dt PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_get_writer PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_get_writer_custom_n_atoms PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_wrong_natoms PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_read_on_closed PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderTZ2::test_mmap_kwarg PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_positions_1 PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_positions_2 PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_forces_1 PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_forces_2 PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_time_1 PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_time_2 PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_dt PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader2::test_box PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_positions[0-0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_positions[8-1] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_forces[0-0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_forces[8-1] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_velocities[0-0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_velocities[8-1] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_time[0-1.0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_time[8-9.0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_nframes PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_dt PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_box[0-0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader3::test_box[8-1] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_chain_times PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_dt PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReader4::test_warn_user_no_time_information PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_coordinates PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_velocities PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_forces PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_box[mutation0-expected0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_box[mutation1-expected1] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScaleFactorImplementation::test_scale_factor_not_float PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation0] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation1] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_type_errors[mutation2] PASSED [ 14%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation0] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation1] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation2] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation3] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_value_errors[mutation4] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation0] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation1] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation2] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation3] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation4] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation5] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_notimplemented_errors[mutation6] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_verify_units_errors[yard-foot] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_verify_units_errors[second-minute] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_ioerror PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_conventionversion_warn PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_program_warn[mutation0] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_program_warn[mutation1] PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFReaderExceptionsWarnings::test_no_dt_warning PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netCDF4 PASSED [ 15%] 1262s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_trajectory_netcdf PASSED [ 15%] 1263s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_OtherWriter[nc] PASSED [ 15%] 1263s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_OtherWriter[ncdf] PASSED [ 15%] 1263s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_TRR2NCDF PASSED [ 15%] 1263s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriter::test_write_AtomGroup PASSED [ 15%] 1264s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netCDF4 PASSED [ 15%] 1264s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_trajectory_netcdf PASSED [ 15%] 1264s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_OtherWriter[nc] PASSED [ 15%] 1264s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_OtherWriter[ncdf] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_TRR2NCDF PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterTZ2::test_write_AtomGroup PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-False-False] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-True-False] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-False-True] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterVelsForces::test_write_u[True-True-True] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_factors_default PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_bad_scale_factor PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[-2.0--2.0--2.0--2.0--2.0--2.0] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[1.0-1.0-1.0-1.0-1.0-1.0] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterScaleFactors::test_write_read_write[2.0-4.0-8.0-16.0-32.0-64.0] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_factors_default PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_bad_scale_factor PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[-2.0--2.0--2.0--2.0--2.0--2.0] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[1.0-1.0-1.0-1.0-1.0-1.0] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_write_read_write[2.0-4.0-8.0-16.0-32.0-64.0] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestScipyScaleFactors::test_ncdf4_not_present PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[coordinates-angstrom] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[time-picosecond] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_lengths-angstrom] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[cell_angles-degree] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[velocities-angstrom/picosecond] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterUnits::test_writer_units[forces-kilocalorie/mole/angstrom] PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_zero_atoms_VE PASSED [ 15%] 1265s testsuite/MDAnalysisTests/coordinates/test_netcdf.py::TestNCDFWriterErrorsWarnings::test_wrong_n_atoms PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_null.py::test_NullWriter PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_ENT PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_coordinates PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_dimensions PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_distances PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_dt PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame_index_0 PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_full_slice PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_last_slice PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_load_file PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_n_atoms PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_n_frames PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_numres PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_pickle_singleframe_reader PASSED [ 15%] 1266s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_time PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReader::test_uses_PDBReader PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_HEADER PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_TITLE PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_COMPND PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBMetadata::test_REMARK PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_coordinates PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_distances PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_dt PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame_index_0 PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_full_slice PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_last_slice PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_load_file PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_long_resSeq PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_n_atoms PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_n_frames PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_numres PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_pickle_singleframe_reader PASSED [ 15%] 1267s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestExtendedPDBReader::test_time PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resnames PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_resids PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_atom_names PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_altlocs PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_icodes PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_segids PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_occupancies PASSED [ 15%] 1268s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_writer_no_tempfactors PASSED [ 15%] 1269s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_single_frame_Writer PASSED [ 15%] 1269s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_single_frame_AtomGroup PASSED [ 15%] 1269s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_nodims[universe_and_expected_dims0] PASSED [ 15%] 1269s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_write_nodims[universe_and_expected_dims1] PASSED [ 15%] 1270s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_coordinate_limits_min PASSED [ 15%] 1270s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_coordinate_limits_max PASSED [ 15%] 1271s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_HEADER_TITLE_multiframe PASSED [ 15%] 1271s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_MODEL_multiframe[0-12] PASSED [ 15%] 1271s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_check_MODEL_multiframe[9997-12] PASSED [ 15%] 1273s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[@] PASSED [ 15%] 1275s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[] PASSED [ 15%] 1277s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_chainid_validated[AA] PASSED [ 15%] 1277s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_stringio_outofrange PASSED [ 15%] 1277s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_hetatm_written PASSED [ 15%] 1277s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_default_atom_record_type_written PASSED [ 15%] 1277s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_abnormal_record_type PASSED [ 15%] 1278s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex PASSED [ 15%] 1279s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex_bonds PASSED [ 15%] 1279s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_reindex PASSED [ 15%] 1279s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBWriter::test_no_reindex_missing_ids PASSED [ 15%] 1280s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_n_frames PASSED [ 15%] 1280s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_n_atoms_frame PASSED [ 15%] 1280s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_rewind PASSED [ 15%] 1280s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_iteration PASSED [ 15%] 1280s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_slice_iteration PASSED [ 15%] 1284s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_conect_bonds_conect PASSED [ 15%] 1284s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_conect_error PASSED [ 15%] 1284s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBReader::test_numconnections PASSED [ 15%] 1289s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_conect_bonds_all PASSED [ 15%] 1289s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_bonds_partial PASSED [ 15%] 1289s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_bonds_with_100000_ag_index PASSED [ 15%] 1289s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_atomselection PASSED [ 15%] 1289s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_all_timesteps PASSED [ 15%] 1289s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_loop PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestMultiPDBWriter::test_write_atoms PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_load_pdb PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_selection PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_atoms PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_frames PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_time PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_frame PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_dt PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_coordinates PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_distances PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_unitcell PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_volume PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_n_residues PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBReaderBig::test_first_residue PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_ts_data_keys PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_varying_attrs[occupancy-occupancies-vals0] PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBVaryingOccTmp::test_varying_attrs[tempfactor-tempfactors-vals1] PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_natoms PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_coords PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_dims PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_names PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_residues PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_resnames PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestIncompletePDB::test_reading_trajectory PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_load PASSED [ 15%] 1290s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPDBXLSerial::test_serials PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_coordinates PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_distances PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_dt PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame_index_0 PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_full_slice PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_last_slice PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_load_file PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_n_atoms PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_n_frames PASSED [ 15%] 1291s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_numres PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_pickle_singleframe_reader PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_CRDReader::test_time PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_ENT PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_coordinates PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_dimensions PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_distances PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_dt PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_0 PASSED [ 15%] 1292s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_frame_index_1_raises_IndexError PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_full_slice PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_last_slice PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_load_file PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_n_atoms PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_n_frames PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_numres PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_pickle_singleframe_reader PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_time PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestPSF_PDBReader::test_uses_PDBReader PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_occupancies PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestWriterAlignments::test_atomname_alignment PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestWriterAlignments::test_atomtype_alignment PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom0- CA ] PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom1- OE1] PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom2-SE ] PASSED [ 15%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom3-CA ] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom4-FE ] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_deduce_PDB_atom_name[atom5- P ] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_order[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 1293s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_seekaround[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.bz2] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/cryst_then_model.pdb.gz] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.bz2] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::TestCrystModelOrder::test_rewind[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/model_then_cryst.pdb.gz] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_standalone_pdb PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_pdb_zero_atoms PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_atom_not_match PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_partially_missing_cryst PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_no_atoms_elements PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_write_atom_elements PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_elements_roundtrip PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_cryst_meaningless_warning PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_cryst_meaningless_select PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_roundtrip PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_not_int PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_limit[99] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdb.py::test_charges_limit[-100] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_segid PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_chainID PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_protein PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_backbone PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_neighborhood PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_n_frames PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_time PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQT::test_frame PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.bz2] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_writing_coords[test.pdbqt.gz] PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_roundtrip_formatting PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_charges PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_write_no_chainids_with_segids PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pdbqt.py::TestPDBQTWriter::test_get_writer PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_ArgCACharges PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_ProNCharges PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_coordinates PASSED [ 16%] 1294s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_dimensions PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_distances PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_dt PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame_index_0 PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_frame_index_1_raises_IndexError PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_full_slice PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_hydrogenCharges PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_last_slice PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_load_file PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_n_atoms PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_n_frames PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_numres PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_pickle_singleframe_reader PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_time PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRReader::test_total_charge PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr] PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr.bz2] PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_simple_writer_roundtrip[test.pqr.gz] PASSED [ 16%] 1295s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_writer_noChainID PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_write_withChainID PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_timestep_not_modified_by_writer PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriter::test_total_charge PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_names_writing PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_resnames_writing PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_radii_writing PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_pqr.py::TestPQRWriterMissingAttrs::test_no_charges_writing PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_required_attributes PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_iter PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_close PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_rewind PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_context PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_len PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_raises_StopIteration PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_unknown_order_key[turnip] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_unknown_order_key[abc] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[faac] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[affc] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[afcc] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_timeseries_raises_incorrect_order_key[] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None-None] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-5-None] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[2-None-None] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[2-5-None] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None-2] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-None--1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None--1--1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[10-0--1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-10-1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-10-2] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-20-None] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-20-2] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-5-2] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[5-None--1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[None-5--1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-10-1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-10-None-1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-None--1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-5--20] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[5-1-1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[1-5--1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-100-None-None] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[100-None-None] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[-2-10--2] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[0-0-1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice[10-1-2] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice_VE_1 PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_slice_TE_1 PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl0-list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl0-array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl1-list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl1-array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl2-list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl2-array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl3-list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl3-array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl4-list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl4-array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl5-list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl5-array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl6-list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem[sl6-array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl0] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl1] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl2] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl3] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl4] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl5] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl6] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl7] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl8] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl9] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len[sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len_empty[list] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_len_empty[array] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl20-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl21-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl22-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl23-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl24-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl25-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl26-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl10] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl11] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl12] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl13] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl27-sl14] PASSED [ 16%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem[sl28-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[0-sl15] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[2-sl15] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[4-sl15] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-1-sl15] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-2-sl15] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_double_getitem_int[-4-sl15] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_list_TE PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_array_TE PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[5-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl10] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl11] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl12] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl13] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestMultiFrameReader::test_getitem_IE[-6-sl14] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_required_attributes PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_iter PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_close PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_context PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_len PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_raises_StopIteration PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_unknown_order_key[turnip] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_unknown_order_key[abc] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[faac] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[affc] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[afcc] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_timeseries_raises_incorrect_order_key[] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_next PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_2 PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_IE PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_getitem_IE_2 PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_slice_1 PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_slice_2 PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_reopen PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_rewind PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_read_frame PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_reader_api.py::TestSingleFrameReader::test_iter_rewind PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_neg PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_neg_IE PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_pos_IE PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_slice PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_slice2 PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_ndarray PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_getitem_TE PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_len PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_iter PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_repr PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_repr_with_box PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_repr_no_box PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_default_dtype_npf32 PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions_set_box[int] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions_set_box[float32] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dimensions_set_box[float64] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_volume PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_triclinic_vectors PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_set_triclinic_vectors PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_set_dimensions_None PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_set_triclinic_dimensions_None PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_coordinate_getter_shortcuts PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_coordinate_setter_shortcuts PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_n_atoms PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_n_atoms_readonly PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_n_atoms_presence PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_unitcell_presence PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_data_presence PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_allocate_velocities PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_allocate_forces PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_velocities_remove PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_forces_remove PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_ts PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-True-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-True-False] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-False-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[True-False-False] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[False-True-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[False-True-False] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates[False-False-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates_mismatch PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_coordinates_nodata PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_supply_dt PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_redefine_dt PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_delete_dt PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_supply_time_offset PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_delete_time PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time_with_offset PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dt PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_change_dt PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dt_with_offset PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_time_overrides_dt_with_offset PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy[_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts0-_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts1-_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts2-_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts3-_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts4-_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts5-_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_copy] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_independent] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_copy_slice_indices] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_copy_slice_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_copy_slice[some_ts6-_check_npint_slice] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts0] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts1] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts2] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts3] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts4] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts5] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_bad_slice[some_ts6] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts0] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts1] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts2] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts3] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts4] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts5] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_from_timestep[some_ts6] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-True-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-True-False] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-False-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[True-False-False] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[False-True-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[False-True-False] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_equal[False-False-True] PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_class_equality PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_frame_equality PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_n_atoms_equality PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_wrong_pos_equality PASSED [ 17%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_no_pos_inequality PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_vels_equality PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_mismatched_vels_equality PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_wrong_vels_equality PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_forces_equality PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_mismatched_forces_equality PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_check_wrong_forces_equality PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dims_mismatch_inequality[None] PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestTimestep::test_dims_mismatch_inequality[dim11] PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe0] PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe1] PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe2] PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe3] PASSED [ 18%] 1296s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe4] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe5] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe6] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe7] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe8] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe9] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe10] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe11] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe12] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe13] PASSED [ 18%] 1297s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe14] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe15] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe16] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe17] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_frame[universe18] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe0] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe1] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe2] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe3] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe4] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe5] PASSED [ 18%] 1298s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe6] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe7] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe8] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe9] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe10] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe11] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe12] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe13] PASSED [ 18%] 1299s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe14] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe15] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe16] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe17] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::TestBaseTimestepInterface::test_dt[universe18] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni0] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni1] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni2] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni3] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni4] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni5] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_timestep_api.py::test_atomgroup_dims_access[uni6] PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_pytng_not_present_raises PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_parse_n_atoms_no_pytng PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_n_atoms SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_n_frames SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_first_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_double_close SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_dt SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_ts_dt_matches_reader SKIPPED [ 18%] 1300s 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testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_auxiliary SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_aux_attribute SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_as_aux_cutoff SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_reload_auxiliaries_from_description SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_stop_iter SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_iter SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_2iter SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_slice SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_switch_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformation_rewind SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_transformations_copy SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_add_another_transformations_raises_ValueError SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_reader SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_frame_collect_all_same SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[fac] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[fca] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[afc] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[acf] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[caf] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_shape[cfa] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_values[slice0] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_values[slice1] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_values[slice2] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_shape[index 1] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_shape[index 2] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_shape[index 1 to 3] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_empty_asel SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_empty_atomgroup SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_asel_warns_deprecation SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_atomgroup SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_timeseries_atomgroup_asel_mutex SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_last_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_go_over_last_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_frame_jump SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_frame_jump_issue1942 SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_next_gives_second_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_reopen SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_rename_aux SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_as_aux_highf SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_as_aux_lowf SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_rewinds[indexed] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_rewinds[sliced] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_iter_rewinds[all] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_next_ts_reader SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_pickle_last_ts_reader SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_writer_1 SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGCoordinatesTraj::test_get_writer_2 SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_tng_traj_uneven_blocks SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_n_atoms SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_n_frames SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_block_names SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_special_blocks SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_additional_blocks SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_initial_frame_is_0 SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_starts_with_first_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_rewind SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_full_slice SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_random_access SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_frame_overrun SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_positions_first_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_box_first_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_positions_last_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_box_last_frame SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[0] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[20] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[50] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_step[100] SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_lambda_in_ts SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_read_box_fail_strange_step SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_read_pos_fail_strange_step SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_additional_block_read_fails SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj::test_parse_n_atoms SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_n_atoms SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_n_frames SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_block_names SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_special_blocks SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_read_vels_fail_strange_step SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::TestTNGTraj_vels_forces::test_read_force_fail_strange_step SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_tng.py::test_writer_raises_notimpl SKIPPED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_initial_frame_is_0 PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_positions PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_dimensions PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_n_frames PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_n_atoms PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_frame PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_time PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_dt PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_trc_data_step PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_periodic PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_rewind PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_random_access PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderVacuumBox::test_read_frame_reopens PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_trc_n_atoms PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_periodic PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_trc_dimensions PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBox::test_open_twice PASSED [ 18%] 1300s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderSolvatedBoxNoConvert::test_trc_dimensions PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_n_atoms PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_periodic PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_dimensions PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTriclinicBox::test_trc_distances PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderTruncOctBox::test_universe PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxOrigin::test_universe PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCGenboxEuler::test_universe PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCEmptyFile::test_universe PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_n_atoms PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_periodic PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_dimensions PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_n_frames PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_frame PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trc.py::TestTRCReaderClusterTrajectory::test_trc_time PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_load_prm PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_n_atoms PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_n_frames PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_periodic PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_amber_proteinselection PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_sum_centres_of_geometry PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_initial_frame_is_0 PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_starts_with_first_frame PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_rewind PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_full_slice PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_random_access PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestTRJReader::test_read_frame_reopens PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_load_prm PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_n_atoms PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_n_frames PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_periodic PASSED [ 18%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_amber_proteinselection PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_sum_centres_of_geometry PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_initial_frame_is_0 PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_starts_with_first_frame PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_rewind PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_full_slice PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_random_access PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReader::test_read_frame_reopens PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_load_prm PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_n_atoms PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_n_frames PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_periodic PASSED [ 19%] 1301s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_amber_proteinselection PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_sum_centres_of_geometry PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_initial_frame_is_0 PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_starts_with_first_frame PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_rewind PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_full_slice PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trj.py::TestBzippedTRJReaderPBC::test_random_access PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trj.py::test_trj_no_natoms PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_reader PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::test_deprecated_trz_writer PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_load_trz PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_next_trz PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_rewind_trz PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_n_frames PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_seeking PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_volume PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_unitcell PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_coordinates PASSED [ 19%] 1302s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_velocities PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_delta PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_time PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_title PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_writer PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_writer_2 PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_get_wrong_n_atoms PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZReader::test_read_zero_box PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_write_trajectory PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_long_title PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter::test_no_box_warning PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_writer_trz_from_other PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestTRZWriter2::test_no_dt_warning PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_trz.py::TestWrite_Partial_Timestep::test_write_trajectory PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_txyz_positions PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_positions PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_positions_frame_2 PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arc_traj_length PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_arcpbc_traj_length PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_txyz.py::test_pbc_boxsize PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_load_prm PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_n_atoms PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_n_frames PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_periodic PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_amber_proteinselection PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_sum_centres_of_geometry PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_initial_frame_is_0 PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_starts_with_first_frame PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_rewind PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_full_slice PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_random_access PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestTRJReader::test_read_frame_reopens PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_len PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_getting PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_slicing PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_slicing_2 PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_position PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_velocity PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_force PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestDLPolyHistory::test_unitcell PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[ascii] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[bz2] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_n_atoms[gzip] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[ascii] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[bz2] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_length[gzip] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[ascii] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[bz2] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_seeking[gzip] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[ascii] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[bz2] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_boxsize[gzip] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[ascii] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[bz2] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_atom_reordering[gzip] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_true-fields0] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_single-fields1] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_additional_columns[u_additional_columns_multiple-fields2] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_wrong_format_additional_colums[u_additional_columns_wrong_format] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestLammpsDumpReader::test_warning[u_additional_columns_not_present] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_n_atoms PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_length PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_seeking PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_boxsize PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_atom_reordering PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_additional_columns[u_additional_columns_true-fields0] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_additional_columns[u_additional_columns_single-fields1] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_additional_columns[u_additional_columns_multiple-fields2] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_wrong_format_additional_colums[u_additional_columns_wrong_format] PASSED [ 19%] 1303s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinLammpsDump::test_warning[u_additional_columns_not_present] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_n_frames PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_rewind PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_iteration PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinPDB::test_slice_iteration PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_len PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_getting PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_slicing PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_slicing_2 PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_position PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_velocity PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_force PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinDLPolyHistory::test_unitcell PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_load_prm PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_n_atoms PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_n_frames PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_periodic PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_amber_proteinselection PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_sum_centres_of_geometry PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_initial_frame_is_0 PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_starts_with_first_frame PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_rewind PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_full_slice PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_random_access PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinTRJ::test_read_frame_reopens PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_n_frames PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_positions PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_windows.py::TestWinARC::test_positions_2 PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[CRDWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[ChemfilesWriter] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DATAWriter] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DCDWriter0] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[DCDWriter1] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[FHIAIMSWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[GROWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[H5MDWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[MOL2Writer] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[MultiPDBWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NAMDBINWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NCDFWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[NullWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PDBQTWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PDBWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[PQRWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[TRRWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[TRZWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[XTCWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_ts_error[XYZWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[CRDWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[ChemfilesWriter] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DATAWriter] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DCDWriter0] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[DCDWriter1] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[FHIAIMSWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[GROWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[H5MDWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MOL2Writer] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[MultiPDBWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NAMDBINWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NCDFWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[NullWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBQTWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PDBWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[PQRWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRRWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[TRZWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[XTCWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_atomgroup[XYZWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[CRDWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[ChemfilesWriter] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DATAWriter] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DCDWriter0] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[DCDWriter1] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[FHIAIMSWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[GROWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[H5MDWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MOL2Writer] SKIPPED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[MultiPDBWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NAMDBINWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NCDFWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[NullWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBQTWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PDBWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[PQRWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRRWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[TRZWriter] PASSED [ 19%] 1304s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[XTCWriter] PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_writer_api.py::test_write_with_universe[XYZWriter] PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_default_multiframe PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_singleframe PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_multiframe_magic2 PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_writer_registration.py::TestWriterCreation::test_singleframe_magic2 PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[foo.xtc-kwargs0-.foo.xtc_offsets.npz] PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[foo.xtc-kwargs1-.foo.xtc_offsets.npz] PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_offsets_filename[bar.0001.trr-kwargs2-.bar.0001.trr_offsets.npzzzz] PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_Sub::test_load_new_raises_ValueError PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_Sub::test_sub_coordinates PASSED [ 19%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_Sub::test_load_new_raises_ValueError PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_Sub::test_sub_coordinates PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_rewind_xdrtrj PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_next_xdrtrj PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_jump_xdrtrj PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_jump_lastframe_xdrtrj PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_slice_xdrtrj PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_reverse_xdrtrj PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_coordinates PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_unitcell PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_volume PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_dt PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_totaltime PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_frame PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_time PASSED [ 20%] 1305s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_get_Writer PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_Writer PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_EOFraisesStopIteration PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader::test_read_next_timestep_ts_no_positions PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReaderClass::test_with_statement PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_rewind_xdrtrj PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_next_xdrtrj PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_jump_xdrtrj PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_jump_lastframe_xdrtrj PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_slice_xdrtrj PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_reverse_xdrtrj PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_coordinates PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_unitcell PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_volume PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_dt PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_totaltime PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_frame PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_time PASSED [ 20%] 1306s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_get_Writer PASSED [ 20%] 1307s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_Writer PASSED [ 20%] 1307s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_EOFraisesStopIteration PASSED [ 20%] 1307s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_read_next_timestep_ts_no_positions PASSED [ 20%] 1307s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader::test_velocities PASSED [ 20%] 1308s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCNoConversion::test_coordinates PASSED [ 20%] 1308s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRNoConversion::test_coordinates PASSED [ 20%] 1309s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter::test_write_trajectory PASSED [ 20%] 1309s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter::test_timestep_not_modified_by_writer PASSED [ 20%] 1309s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_write_trajectory PASSED [ 20%] 1310s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_timestep_not_modified_by_writer PASSED [ 20%] 1310s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_velocities PASSED [ 20%] 1311s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_gaps PASSED [ 20%] 1311s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter::test_data_preservation PASSED [ 20%] 1312s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_GRO PASSED [ 20%] 1313s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_PDB PASSED [ 20%] 1313s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterSingleFrame::test_single_frame_CRD PASSED [ 20%] 1314s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_GRO PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_PDB PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterSingleFrame::test_single_frame_CRD PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriterIssue117::test_write_trajectory PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriterIssue117::test_write_trajectory PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_triclinic_box PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_n_atoms PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_n_frames PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_first_frame PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_double_close PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_writer_1 PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_writer_2 PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_dt PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_ts_dt_matches_reader PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_total_time PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_first_dimensions PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_changing_dimensions PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_volume PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_add_same_auxname_raises_ValueError PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_remove_auxiliary PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_auxiliary PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_get_aux_attribute PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_as_aux_cutoff PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_reload_auxiliaries_from_description PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_stop_iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_2iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_slice PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_switch_frame PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformation_rewind PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_transformations_copy PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_add_another_transformations_raises_ValueError PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_reader PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_frame_collect_all_same PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[fac] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[fca] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[afc] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[acf] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[caf] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_shape[cfa] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_values[slice0] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_values[slice1] SKIPPED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_values[slice2] SKIPPED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_shape[index 1] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_shape[index 2] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_shape[index 1 to 3] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_empty_asel PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_empty_atomgroup PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_asel_warns_deprecation PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_atomgroup PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_timeseries_atomgroup_asel_mutex PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_last_frame PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_go_over_last_frame PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_frame_jump PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_frame_jump_issue1942 PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_next_gives_second_frame PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_reopen PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_rename_aux PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_as_aux_highf PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_as_aux_lowf PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_rewinds[indexed] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_rewinds[sliced] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_iter_rewinds[all] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_next_ts_reader PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_2::test_pickle_last_ts_reader PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_different_box PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_trajectory_atomgroup PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_trajectory_universe PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_selection PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_none PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_no_container PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_write_not_changing_ts PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCWriter_2::test_different_precision PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_n_atoms PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_n_frames PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_first_frame PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_double_close PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_writer_1 PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_writer_2 PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_dt PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_ts_dt_matches_reader PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_total_time PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_first_dimensions PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_changing_dimensions PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_volume PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_add_same_auxname_raises_ValueError PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_remove_auxiliary PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_auxiliary PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_get_aux_attribute PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_as_aux_cutoff PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_reload_auxiliaries_from_description PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_stop_iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_2iter PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_slice PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_switch_frame PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformation_rewind PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_transformations_copy PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_add_another_transformations_raises_ValueError PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_reader PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_frame_collect_all_same PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[fac] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[fca] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[afc] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[acf] PASSED [ 20%] 1315s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[caf] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_shape[cfa] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_values[slice0] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_values[slice1] SKIPPED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_values[slice2] SKIPPED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_shape[index 1] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_shape[index 2] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_shape[index 1 to 3] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_empty_asel PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_empty_atomgroup PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_asel_warns_deprecation PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_atomgroup PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_timeseries_atomgroup_asel_mutex PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_last_frame PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_go_over_last_frame PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_frame_jump PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_frame_jump_issue1942 PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_next_gives_second_frame PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_reopen PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_rename_aux PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_as_aux_highf PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_as_aux_lowf PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_rewinds[indexed] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_rewinds[sliced] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_iter_rewinds[all] PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_next_ts_reader PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_2::test_pickle_last_ts_reader PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_different_box PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_trajectory_atomgroup PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_trajectory_universe PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_selection PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_none PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_no_container PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_write_not_changing_ts PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRWriter_2::test_lambda PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_offsets PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_nonexistent_offsets_file PASSED [ 20%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_corrupted_offsets_file PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_io_fails PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_reload_offsets_if_offsets_readin_value_fails PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_size_mismatch PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_ctime_mismatch PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_natoms_mismatch PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_last_frame_wrong PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_unsupported_format PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_persistent_offsets_readonly PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestXTCReader_offsets::test_offset_lock_created PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_offsets PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_nonexistent_offsets_file PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_corrupted_offsets_file PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_io_fails PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_reload_offsets_if_offsets_readin_value_fails PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_size_mismatch PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_ctime_mismatch PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_natoms_mismatch PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_last_frame_wrong PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_unsupported_format PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_persistent_offsets_readonly PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::TestTRRReader_offsets::test_offset_lock_created PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xdr.py::test_pathlib PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_n_atoms PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_n_frames PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_first_frame PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_double_close PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_writer_1 PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_writer_2 PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_dt PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_ts_dt_matches_reader PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_total_time PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_first_dimensions PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_changing_dimensions PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_volume PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_add_same_auxname_raises_ValueError PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_remove_auxiliary PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_auxiliary PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_get_aux_attribute PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_as_aux_cutoff PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_reload_auxiliaries_from_description PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_stop_iter PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_iter PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_2iter PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_slice PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_switch_frame PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformation_rewind PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_transformations_copy PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_add_another_transformations_raises_ValueError PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_reader PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_frame_collect_all_same PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[fac] PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[fca] PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[afc] PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[acf] PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[caf] PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_shape[cfa] PASSED [ 21%] 1316s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_values[slice0] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_values[slice1] SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_values[slice2] SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_shape[index 1] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_shape[index 2] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_empty_asel PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_empty_atomgroup PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_asel_warns_deprecation PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_atomgroup PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_timeseries_atomgroup_asel_mutex PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_last_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_go_over_last_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_frame_jump PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_frame_jump_issue1942 PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_next_gives_second_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_reopen PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_rename_aux PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_as_aux_highf PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_as_aux_lowf PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_rewinds[indexed] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_rewinds[sliced] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_iter_rewinds[all] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_next_ts_reader PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_pickle_last_ts_reader PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZReader::test_double_open PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_different_box PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_trajectory_atomgroup PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_trajectory_universe PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_none PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_no_container PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_not_changing_ts PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_selection PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_write_different_models_in_trajectory PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_no_conversion PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[Curstom Remark-Curstom Remark] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[-] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriter::test_remark[None-frame 0 | Written by MDAnalysis XYZWriter (release 2.8.0)] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_n_atoms PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_n_frames PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_first_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_double_close PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_writer_1 PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_writer_2 PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_dt PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_ts_dt_matches_reader PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_total_time PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_first_dimensions PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_changing_dimensions PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_volume PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_add_same_auxname_raises_ValueError PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_remove_auxiliary PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_remove_nonexistant_auxiliary_raises_ValueError PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_auxiliary PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_get_aux_attribute PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_as_aux_cutoff PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_reload_auxiliaries_from_description PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_stop_iter PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_iter PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_2iter PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_slice PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_switch_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformation_rewind PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_transformations_copy PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_add_another_transformations_raises_ValueError PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_reader PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_collect_all_same PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[fac] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[fca] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[afc] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[acf] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[caf] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_shape[cfa] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice0] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice1] SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_values[slice2] SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 1] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 2] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_shape[index 1 to 3] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_empty_asel PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_empty_atomgroup PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_asel_warns_deprecation PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_atomgroup PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_timeseries_atomgroup_asel_mutex PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_last_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_go_over_last_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_jump PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_frame_jump_issue1942 PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_next_gives_second_frame PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_reopen PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_rename_aux PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_as_aux_highf PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_as_aux_lowf PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_rewinds[indexed] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_rewinds[sliced] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_iter_rewinds[all] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_next_ts_reader PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_pickle_last_ts_reader PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZReader::test_double_open PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_different_box PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_trajectory_atomgroup PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_trajectory_universe PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_none PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_no_container PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_not_changing_ts PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_selection PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_write_different_models_in_trajectory PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_no_conversion PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[Curstom Remark-Curstom Remark] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[-] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::Test_XYZBZWriter::test_remark[None-frame 0 | Written by MDAnalysis XYZWriter (release 2.8.0)] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_no_names PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_or_names[elements] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_or_names[names] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/coordinates/test_xyz.py::TestXYZWriterNames::test_elements_and_names PASSED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_case_insensitive SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_lib_as_method SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_kwargs SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accessors.py::TestConvertTo::test_convert_to_lib_method_kwargs SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accessors.py::TestAccessor::test_access_from_class PASSED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accessors.py::TestConverterWrapper::test_raises_valueerror PASSED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accessors.py::TestConverterWrapper::test_single_instance SKIPPED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[atoms] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[residues] PASSED [ 21%] 1317s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute[segments] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[atoms] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[residues] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_different_func[segments] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-resindices-residues] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-segindices-segments] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-molnums-molecules] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[atoms-fragindices-fragments] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-resindices-residues] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-segindices-segments] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-molnums-molecules] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[residues-fragindices-fragments] PASSED [ 21%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-resindices-residues] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-segindices-segments] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-molnums-molecules] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_str_attribute_compounds[segments-fragindices-fragments] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[atoms] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[residues] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongname[segments] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[atoms] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[residues] PASSED [ 22%] 1318s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_wrongcomponent[segments] PASSED [ 22%] 1319s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[atoms] PASSED [ 22%] 1319s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[residues] PASSED [ 22%] 1319s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nobonds[segments] PASSED [ 22%] 1320s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[atoms] PASSED [ 22%] 1320s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[residues] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_nomolnums[segments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[atoms] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[residues] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute[segments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[atoms] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[residues] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_wrongshape[segments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-resindices-residues] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-segindices-segments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-molnums-molecules] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[atoms-fragindices-fragments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-resindices-residues] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-segindices-segments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-molnums-molecules] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[residues-fragindices-fragments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-resindices-residues] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-segindices-segments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-molnums-molecules] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestAccumulate::test_accumulate_array_attribute_compounds[segments-fragindices-fragments] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[atoms] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[residues] PASSED [ 22%] 1321s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge[segments] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-resids-residues] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-segids-segments] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[atoms-fragindices-fragments] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-resids-residues] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-segids-segments] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[residues-fragindices-fragments] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-resids-residues] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-segids-segments] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_compounds[segments-fragindices-fragments] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[atoms] PASSED [ 22%] 1322s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[residues] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_charge_duplicates[segments] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[atoms] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[residues] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass[segments] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-resids-residues] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-segids-segments] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[atoms-fragindices-fragments] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-resids-residues] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-segids-segments] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[residues-fragindices-fragments] PASSED [ 22%] 1323s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-resids-residues] PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-segids-segments] PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_compounds[segments-fragindices-fragments] PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[atoms] PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[residues] PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestTotals::test_total_mass_duplicates[segments] PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_com PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_no_center PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_residues_com_coc PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_segment PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_dipole_moment_fragments PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_com PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_coc PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_no_center PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_residues PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_segment PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_accumulate.py::TestMultipole::test_quadrupole_moment_fragments PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_attributes_names PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_name PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_type PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attribute_mass PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_setting_attributes_charge PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_attributes_positions PASSED [ 22%] 1324s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_selection PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_hierarchy PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_bad_add PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_add_AG PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_no_velo PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_bonded_atoms PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_undefined_occupancy PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_pickle[1] PASSED [ 22%] 1325s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_atom_pickle[-1] PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atom.py::TestAtom::test_improper_initialisation PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_velocity_fail PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_force_fail PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_velocity_set_fail PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atom.py::TestAtomNoForceNoVel::test_force_set_fail PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_bond PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_angle PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_dihedral PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_improper PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[bond] PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[angle] PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[dihedral] PASSED [ 22%] 1326s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupToTopology::test_VE[improper] PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_no_args PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_raises_unknown_format PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_coordinates PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames0] PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames1] PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames[frames2] PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames0] PASSED [ 22%] 1327s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames1] PASSED [ 22%] 1328s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_iterator[frames2] PASSED [ 22%] 1328s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xtc] PASSED [ 22%] 1328s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-dcd] PASSED [ 22%] 1328s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-pdb] PASSED [ 22%] 1328s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-xyz] PASSED [ 22%] 1329s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[-PDB] PASSED [ 22%] 1329s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xtc] PASSED [ 22%] 1329s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-dcd] PASSED [ 22%] 1330s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-pdb] PASSED [ 22%] 1330s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-xyz] PASSED [ 22%] 1331s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.gz-PDB] PASSED [ 22%] 1331s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xtc] PASSED [ 22%] 1331s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-dcd] PASSED [ 22%] 1332s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-pdb] PASSED [ 22%] 1332s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-xyz] PASSED [ 22%] 1333s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frame_none[.bz2-PDB] PASSED [ 22%] 1333s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[] PASSED [ 22%] 1333s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[.gz] PASSED [ 22%] 1333s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_all[.bz2] PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[invalid] PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[8] PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[True] PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[False] PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_frames_invalid[3.2] PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_incompatible_arguments PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_incompatible_trajectories PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_no_traj_move PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_write_selection PASSED [ 22%] 1334s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupWriting::test_bogus_kwarg_pdb PASSED [ 22%] 1335s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[] PASSED [ 22%] 1336s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.gz] PASSED [ 22%] 1336s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_atoms[.bz2] PASSED [ 22%] 1336s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_empty_atomgroup PASSED [ 22%] 1336s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[name CA] PASSED [ 22%] 1337s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE and resname LEU] PASSED [ 22%] 1337s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_selection[segid 4AKE] PASSED [ 22%] 1337s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Residue PASSED [ 22%] 1338s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWritePDB::test_write_Universe PASSED [ 22%] 1338s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[] PASSED [ 22%] 1338s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[.gz] PASSED [ 22%] 1338s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_atoms[.bz2] PASSED [ 22%] 1338s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_empty_atomgroup PASSED [ 22%] 1338s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[name CA] PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[segid 4AKE and resname LEU] PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_selection[segid 4AKE] PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_Residue PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestWriteGRO::test_write_Universe PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_translate PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_rotate PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_rotateby PASSED [ 22%] 1339s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_rotation_only PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_translation_only PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTransformations::test_transform_translation_and_rotation PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_1 PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_2 PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_duplicates PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_wrong_length PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_wrong_shape PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-fragments-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-molecules-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-residues-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-group-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[False-segments-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-fragments-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-molecules-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-residues-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-atoms] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-residues] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-group-segments] PASSED [ 22%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-atoms] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-residues] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap[True-segments-segments] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCenter::test_center_unwrap_wrap_true_group PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_atoms PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_residues PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_segments PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestSplit::test_split_VE PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[name-names-string] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[type-types-string] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[altLoc-altLocs-string] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[charge-charges-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[mass-masses-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[radius-radii-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[bfactor-bfactors-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_matches_atom[occupancy-occupancies-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[name-names-string] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[type-types-string] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[altLoc-altLocs-string] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[charge-charges-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[mass-masses-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[radius-radii-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[bfactor-bfactors-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_atom_check_ag[occupancy-occupancies-float] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupProperties::test_ag_unique_restore_mask PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestOrphans::test_atom PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestOrphans::test_atomgroup PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[0-0] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[0-1] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[1-0] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_add_mixed_universes[1-1] PASSED [ 23%] 1340s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestCrossUniverse::test_adding_empty_ags PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs0-names0] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs1-names1] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selection_name[kwargs2-names2] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_single PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_empty PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs0-names0] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs1-names1] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_selections_name[kwargs2-names2] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs0-names0] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs1-names1] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selection_name[kwargs2-names2] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_single PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_empty PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs0-names0] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs1-names1] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_selections_name[kwargs2-names2] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs0-names0] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs1-names1] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selection_name[kwargs2-names2] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_empty PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_single PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs0-names0] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs1-names1] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_selections_name[kwargs2-names2] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs0-names0] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs1-names1] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs2-names2] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_name[kwargs3-names3] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_single PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_empty PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[CYS] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[ILE] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[SER] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[THR] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selections_non_cg[VAL] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[CYSH] PASSED [ 23%] 1341s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[ILE] PASSED [ 23%] 1342s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[SER] PASSED [ 23%] 1342s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[THR] PASSED [ 23%] 1343s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_gromacs[VAL] PASSED [ 23%] 1343s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[CYS] PASSED [ 23%] 1343s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[ILE] PASSED [ 23%] 1343s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[SER] PASSED [ 23%] 1343s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[THR] PASSED [ 23%] 1343s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_non_cg_charmm[VAL] PASSED [ 23%] 1343s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ARG] PASSED [ 23%] 1344s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ASP] PASSED [ 23%] 1344s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[CYS] PASSED [ 23%] 1344s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[GLN] PASSED [ 23%] 1345s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[GLU] PASSED [ 23%] 1345s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[HIS] PASSED [ 23%] 1346s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[ILE] PASSED [ 23%] 1346s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[LEU] PASSED [ 23%] 1347s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[LYS] PASSED [ 23%] 1347s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[MET] PASSED [ 23%] 1347s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[PHE] PASSED [ 23%] 1348s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[PRO] PASSED [ 23%] 1348s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[SER] PASSED [ 23%] 1349s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[THR] PASSED [ 23%] 1349s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[TRP] PASSED [ 23%] 1349s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[TYR] PASSED [ 23%] 1350s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_selection_all_res[VAL] PASSED [ 23%] 1350s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_no_chi1[ALA] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_no_chi1[GLY] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_sel_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_sels_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_sel_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_sels_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_sel_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_sels_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_ch1_sel_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_sels_fail PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_phi PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_psi PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_omega PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_dihedral_chi1 PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_phi_nodep PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_psi_nodep PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_omega_nodep PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestDihedralSelections::test_chi1_nodep PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_geometry-True-ref0] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_geometry-False-ref1] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_mass-True-ref0] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-center_of_mass-False-ref1] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-moment_of_inertia-True-ref0] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-moment_of_inertia-False-ref1] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-asphericity-True-ref0] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-asphericity-False-ref1] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-shape_parameter-True-ref0] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[False-shape_parameter-False-ref1] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_geometry-True-ref0] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_geometry-False-ref1] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_mass-True-ref0] PASSED [ 23%] 1351s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-center_of_mass-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-moment_of_inertia-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-moment_of_inertia-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-asphericity-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-asphericity-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-shape_parameter-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_residues[True-shape_parameter-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_geometry-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_geometry-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_mass-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[center_of_mass-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[moment_of_inertia-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[moment_of_inertia-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[asphericity-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestUnwrapFlag::test_group[asphericity-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_geometry-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_geometry-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_mass-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[center_of_mass-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[radius_of_gyration-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[radius_of_gyration-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[shape_parameter-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[shape_parameter-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[asphericity-True-ref0] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[asphericity-False-ref1] PASSED [ 23%] 1352s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[moment_of_inertia-True-ref0] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[moment_of_inertia-False-ref1] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bbox-True-ref0] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bbox-False-ref1] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bsphere-True-ref0] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[bsphere-False-ref1] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[principal_axes-True-ref0] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestPBCFlag::test_wrap[principal_axes-False-ref1] PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_int PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_slice PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_slice2 PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_getitem_IE PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bad_make PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_invalid_index_initialisation PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_atoms PASSED [ 23%] 1353s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_residues PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_zero_atoms_residues PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_n_segments PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_zero_atoms_segments PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids_dim PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums_dim PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids_dim PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_len PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_of_geometry PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_of_mass PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_duplicates[center_of_geometry] PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_duplicates[center_of_mass] PASSED [ 23%] 1354s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[resids-residues-center_of_geometry] PASSED [ 23%] 1355s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[resids-residues-center_of_mass] PASSED [ 23%] 1355s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[segids-segments-center_of_geometry] PASSED [ 23%] 1355s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds[segids-segments-center_of_mass] PASSED [ 23%] 1355s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-resids-residues-center_of_geometry] PASSED [ 23%] 1355s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-resids-residues-center_of_mass] PASSED [ 23%] 1355s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-segids-segments-center_of_geometry] PASSED [ 23%] 1356s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[True-segids-segments-center_of_mass] PASSED [ 23%] 1356s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-resids-residues-center_of_geometry] PASSED [ 23%] 1356s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-resids-residues-center_of_mass] PASSED [ 23%] 1356s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-segids-segments-center_of_geometry] PASSED [ 23%] 1356s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_pbc[False-segids-segments-center_of_mass] PASSED [ 23%] 1356s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[molnums-molecules-center_of_geometry] PASSED [ 24%] 1357s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[molnums-molecules-center_of_mass] PASSED [ 24%] 1357s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[fragindices-fragments-center_of_geometry] PASSED [ 24%] 1358s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special[fragindices-fragments-center_of_mass] PASSED [ 24%] 1360s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-molnums-molecules-center_of_geometry] PASSED [ 24%] 1361s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-molnums-molecules-center_of_mass] PASSED [ 24%] 1362s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-fragindices-fragments-center_of_geometry] PASSED [ 24%] 1364s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[True-fragindices-fragments-center_of_mass] PASSED [ 24%] 1364s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-molnums-molecules-center_of_geometry] PASSED [ 24%] 1365s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-molnums-molecules-center_of_mass] PASSED [ 24%] 1365s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-fragindices-fragments-center_of_geometry] PASSED [ 24%] 1366s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_pbc[False-fragindices-fragments-center_of_mass] PASSED [ 24%] 1366s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_wrong_compound PASSED [ 24%] 1366s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_fail[molecules] PASSED [ 24%] 1367s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_special_fail[fragments] PASSED [ 24%] 1367s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-None] PASSED [ 24%] 1367s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-weights1] PASSED [ 24%] 1367s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-group-weights2] PASSED [ 24%] 1367s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-None] PASSED [ 24%] 1367s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-weights1] PASSED [ 24%] 1367s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-residues-weights2] PASSED [ 24%] 1368s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-None] PASSED [ 24%] 1368s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-weights1] PASSED [ 24%] 1368s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-segments-weights2] PASSED [ 24%] 1369s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-None] PASSED [ 24%] 1369s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-weights1] PASSED [ 24%] 1369s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-molecules-weights2] PASSED [ 24%] 1369s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-None] PASSED [ 24%] 1369s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-weights1] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[False-fragments-weights2] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-None] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-weights1] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-group-weights2] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-None] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-weights1] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-residues-weights2] PASSED [ 24%] 1370s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-None] PASSED [ 24%] 1371s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-weights1] PASSED [ 24%] 1371s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-segments-weights2] PASSED [ 24%] 1371s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-None] PASSED [ 24%] 1371s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-weights1] PASSED [ 24%] 1371s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-molecules-weights2] PASSED [ 24%] 1371s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-None] PASSED [ 24%] 1372s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-weights1] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_single[True-fragments-weights2] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-None-False] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-None-True] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-weights1-False] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[group-weights1-True] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-None-False] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-None-True] PASSED [ 24%] 1373s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-weights1-False] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[residues-weights1-True] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-None-False] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-None-True] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-weights1-False] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[segments-weights1-True] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-None-False] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-None-True] PASSED [ 24%] 1374s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-weights1-False] PASSED [ 24%] 1375s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[molecules-weights1-True] PASSED [ 24%] 1375s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-None-False] PASSED [ 24%] 1375s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-None-True] PASSED [ 24%] 1375s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-weights1-False] PASSED [ 24%] 1376s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_empty[fragments-weights1-True] PASSED [ 24%] 1376s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[-group-False] PASSED [ 24%] 1376s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[-group-True] PASSED [ 24%] 1377s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[resids-residues-False] PASSED [ 24%] 1377s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[resids-residues-True] PASSED [ 24%] 1377s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[segids-segments-False] PASSED [ 24%] 1377s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[segids-segments-True] PASSED [ 24%] 1377s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[molnums-molecules-False] PASSED [ 24%] 1377s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[molnums-molecules-True] PASSED [ 24%] 1378s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[fragindices-fragments-False] PASSED [ 24%] 1378s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_center_compounds_zero_weights[fragindices-fragments-True] PASSED [ 24%] 1378s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_coordinates PASSED [ 24%] 1378s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_principal_axes PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_principal_axes_duplicates PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_moment_of_inertia_duplicates PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_radius_of_gyration_duplicates PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_indices_ndarray PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_indices PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids_ndarray PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resids PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums_ndarray PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnums PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnames_ndarray PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_resnames PASSED [ 24%] 1379s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_names_ndarray PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_names PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids_ndarray PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_segids PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_masses_ndarray PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_masses PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_charges_ndarray PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_charges PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bad_add_AG PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_false PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_true PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_repr PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_resnum_single PASSED [ 24%] 1380s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_resname_single PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox_badshape PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox_noshape PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_packintobox PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_residues PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_integer PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_slice PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_slice_empty PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_index_advancedslice PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_2d_indexing_caught PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_boolean_indexing_2[sel0] PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_boolean_indexing_2[sel1] PASSED [ 24%] 1381s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bool_IE PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_dihedral_ValueError PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_improper PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_dihedral_equals_improper PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond_pbc PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_bond_ValueError PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_angle PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_angle_ValueError PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_shape_parameter PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_shape_parameter_duplicates PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_asphericity PASSED [ 24%] 1382s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_asphericity_duplicates PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_positions PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_set_names PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroup::test_atom_order PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupTimestep::test_partial_timestep PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[ix] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[ids] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[resids] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[segids] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[charges] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[masses] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort[tempfactors] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_bonds PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_positions_2D PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_position_no_keyfunc PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupSort::test_sort_position PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupPickle::test_atomgroup_pickle[name CA] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomgroup.py::TestAtomGroupPickle::test_atomgroup_pickle[segid 4AKE] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_segid PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ACE] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ALA] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ALAD] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ARG] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ARGN] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASF] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASH] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASN] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASN1] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASP] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ASPH] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CALA] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CARG] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASF] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASN] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CASP] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CCYS] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CCYX] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLN] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLU] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CGLY] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHID] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHIE] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CHIP] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CILE] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CLEU] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CLYS] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CME] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CMET] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CPHE] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CPRO] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CSER] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTHR] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTRP] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CTYR] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CVAL] PASSED [ 24%] 1383s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYM] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS1] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYS2] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYSH] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[CYX] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[DAB] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLH] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLN] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLU] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLUH] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[GLY] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HID] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIE] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIP] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS] PASSED [ 24%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS1] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HIS2] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISA] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISB] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISD] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HISH] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSD] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HSP] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[HYP] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ILE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LEU] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYN] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYS] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[LYSH] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[MET] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[MSE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NALA] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NARG] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NASN] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NASP] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NCYS] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NCYX] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLN] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLU] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NGLY] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHID] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHIE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NHIP] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NILE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NLEU] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NLYS] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NME] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NMET] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NPHE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NPRO] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NSER] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTHR] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTRP] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NTYR] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[NVAL] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[ORN] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PGLU] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PHE] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[PRO] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[QLN] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[SER] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[THR] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[TRP] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[TYR] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_protein_resnames[VAL] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_backbone PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resid_single PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resid_range PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_selgroup PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_fullselgroup PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resnum_single PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resnum_range PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_resname PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_name PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_atom PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_atom_empty PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_type PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_and PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_or PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_not PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_around[around 4.0 bynum 1943] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_around[around 4.0 index 1942] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphlayer[sphlayer 4.0 6.0 bynum 1281] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphlayer[sphlayer 4.0 6.0 index 1280] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_isolayer[isolayer 4.0 6.0 bynum 1281] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_isolayer[isolayer 4.0 6.0 index 1280] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphzone[sphzone 6.0 bynum 1281] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_sphzone[sphzone 6.0 index 1280] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cylayer[cylayer 4.0 6.0 10 -10 bynum 1281] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cylayer[cylayer 4.0 6.0 10 -10 index 1280] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_cylayer PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cyzone[cyzone 6.0 10 -10 bynum 1281] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_cyzone[cyzone 6.0 10 -10 index 1280] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_cyzone PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_point PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_prop PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_bynum PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_index PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_byres[byres bynum 0:5-19] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_byres[byres index 0:19-43] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_same_resname PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_same_segment PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_same PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_empty_selection PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_parenthesized_expression PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_no_space_around_parentheses PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_concatenated_selection PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_global PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname TYR THR-resname T*R] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN GLN-resname *N] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN ASP-resname AS*] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname TYR THR-resname T?R] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname ASN ASP HSD-resname *S?] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname LEU LYS-resname L**] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname MET-resname *M*] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname GLN GLY-resname GL[NY]] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsCHARMM::test_wildcard_selection[resname GLU-resname GL[!NY]] PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_protein PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_backbone PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsAMBER::test_type PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_protein PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_resid_single PASSED [ 25%] 1384s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNAMD::test_type PASSED [ 25%] 1385s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_protein PASSED [ 25%] 1385s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_backbone PASSED [ 25%] 1385s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_resid_single PASSED [ 25%] 1386s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as bynum 1 or bynum 10] PASSED [ 25%] 1386s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as bynum 1 10] PASSED [ 25%] 1387s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as index 0 or index 9] PASSED [ 25%] 1387s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_same_coordinate[same x as index 0 9] PASSED [ 25%] 1387s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cylayer[cylayer 10 20 20 -20 bynum 3554] PASSED [ 25%] 1388s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cylayer[cylayer 10 20 20 -20 index 3553] PASSED [ 25%] 1388s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cyzone[cyzone 20 20 -20 bynum 3554] PASSED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsGRO::test_cyzone[cyzone 20 20 -20 index 3553] PASSED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_same_fragment[same fragment as bynum 1] PASSED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_same_fragment[same fragment as index 0] PASSED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_moltype PASSED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_molnum[molnum 1-reference0] PASSED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsTPR::test_molnum[molnum 2:4-reference1] PASSED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[aromatic-5] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[not aromatic-1] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type N and aromatic-1] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_aromatic_selection[type C and aromatic-4] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts n-indices0] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [#7]-indices1] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a-indices2] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts c-indices3] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [*-]-indices4] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([!#1]);$([!R][R])]-indices5] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([C@H](-[CH2])(-[O-])-C=O)]-indices6] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts [$([C@@H](-[CH2])(-[O-])-C=O)]-indices7] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a and type C-indices8] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[(smarts a) and (type C)-indices9] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_smarts_selection[smarts a and type N-indices10] SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_invalid_smarts_sel_raises_error SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_rdkit_kwargs_to_converter SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_max_matches_to_converter SKIPPED [ 25%] 1389s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionRDKit::test_passing_use_chirality_to_converter SKIPPED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic PASSED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleic_all PASSED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicbackbone PASSED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicbase PASSED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionsNucleicAcids::test_nucleicsugar PASSED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_around[True] PASSED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_around[False] PASSED [ 25%] 1390s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_layer[True] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_layer[False] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_isolayer[True] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_isolayer[False] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_zone[True] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_spherical_zone[False] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_point[True] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_point[False] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_cyzone[distmat-True] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_cyzone[distmat-False] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[True-33] PASSED [ 25%] 1391s testsuite/MDAnalysisTests/core/test_atomselections.py::TestOrthogonalDistanceSelections::test_sphzone[False-25] PASSED [ 25%] 1392s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[True] PASSED [ 25%] 1392s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_around[False] PASSED [ 25%] 1392s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[True] PASSED [ 25%] 1393s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_layer[False] PASSED [ 25%] 1393s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_isolayer[True] PASSED [ 25%] 1394s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_isolayer[False] PASSED [ 25%] 1394s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_zone[True] PASSED [ 25%] 1394s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_spherical_zone[False] PASSED [ 25%] 1395s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_point[True] PASSED [ 25%] 1395s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicDistanceSelections::test_point[False] PASSED [ 25%] 1396s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_around PASSED [ 25%] 1396s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_sphlayer PASSED [ 25%] 1397s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_sphlayer PASSED [ 25%] 1397s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_isolayer PASSED [ 25%] 1397s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_sphzone PASSED [ 25%] 1398s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_empty_sphzone PASSED [ 25%] 1398s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_point_1 PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestTriclinicSelections::test_point_2 PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass < 1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass <1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass< 1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-mass-prop mass<1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge < 1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge <1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge< 1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag0-charge-prop charge<1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass < 1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass <1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass< 1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-mass-prop mass<1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge < 1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge <1.5] PASSED [ 25%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge< 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_lt[ag1-charge-prop charge<1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass <=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-mass-prop mass<=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge <=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag0-charge-prop charge<=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass <=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-mass-prop mass<=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge <=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_le[ag1-charge-prop charge<=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass > 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass >1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass> 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-mass-prop mass>1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge > 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge >1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge> 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag0-charge-prop charge>1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass > 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass >1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass> 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-mass-prop mass>1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge > 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge >1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge> 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_gt[ag1-charge-prop charge>1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass >=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-mass-prop mass>=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge >=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag0-charge-prop charge>=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass >=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-mass-prop mass>=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge >=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ge[ag1-charge-prop charge>=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass == 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass ==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass== 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-mass-prop mass==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge == 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge ==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge== 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag0-charge-prop charge==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass == 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass ==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass== 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-mass-prop mass==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge == 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge ==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge== 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_eq[ag1-charge-prop charge==1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass != 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass !=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-mass-prop mass!=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge != 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge !=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag0-charge-prop charge!=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass != 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass !=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-mass-prop mass!=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge != 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge !=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!= 1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_ne[ag1-charge-prop charge!=1.5] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-<=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass->=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-==] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-mass-!=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-<=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge->=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-==] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag0-charge-!=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-<=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass->=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-==] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-mass-!=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-<=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge->=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-==] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestPropSelection::test_flip[ag1-charge-!=] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_bonded_1 PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestBondedSelection::test_nobonds_warns PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name and H] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name )] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid abcd] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum 7a7] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid 1-] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken == tasty] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop chicken <= 7.4] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass ^^ 12.0] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same this as resid 1] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[same resid resname mass 5.0] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[name H and] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[naem H] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resid and name C] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[resnum ] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[bynum or protein] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[index or protein] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass < 4.0 hello] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[prop mass > 10. and group this] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0 to] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass to 3.0] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1.0:] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass :3.0] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[mass 1-] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[chirality ] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_selection_fail[formalcharge 0.2] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestSelectionErrors::test_invalid_prop_selection PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_segid_and_resid PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameABA or name NameACA or name NameADA-name NameABA NameACA NameADA] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[type TypeE or type TypeD or type TypeB-type TypeE TypeD TypeB] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[resname RsC or resname RsY-resname RsC RsY] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[name NameAB* or name NameACC-name NameAB* NameACC] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[segid SegA or segid SegC-segid SegA SegC] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_string_selections[(name NameABC or name NameABB) and (resname RsD or resname RsF)-name NameABC NameABB and resname RsD RsF] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resid] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-resnum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-bynum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 2-{typ} 1 2-index] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resid] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-resnum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-bynum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 22-{typ} 1:10 22-index] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resid] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-resnum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-bynum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1:10 or {typ} 20:30-{typ} 1:10 20:30-index] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resid] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-resnum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-bynum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7-{typ} 1-5 7-index] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resid] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-resnum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-bynum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1-5 or {typ} 7:10 or {typ} 12-{typ} 1-5 7:10 12-index] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resid] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-resnum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-bynum] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestImplicitOr::test_range_selections[{typ} 1 or {typ} 3 or {typ} 5:10-{typ} 1 3 5:10-index] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_resid_implicit_icode PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_1 PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_2 PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_3 PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_4 PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_select_icode_range_5 PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_VE PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::TestICodeSelection::test_missing_icodes_range_VE PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same residue as -11] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[same resid as-72] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_similarity_selection_icodes[byres-11] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[all] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[protein] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[backbone] PASSED [ 26%] 1399s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleic] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[nucleicbackbone] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name O] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[name N*] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname stuff] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resname ALA] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[type O] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 0] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[index 1] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[bynum 1-10] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[segid SYSTEM] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 163] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resid 1-10] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[resnum 2] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[around 10 resid 1] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[point 0 0 0 10] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphzone 10 resid 1] PASSED [ 26%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[sphlayer 0 10 index 1] PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cyzone 15 4 -8 index 0] PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[cylayer 5 10 10 -8 index 1] PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[prop abs z <= 100] PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[byres index 0] PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_selections_on_empty_group[same resid as index 0] PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_yet_global PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_arbitrary_atom_group_raises_error PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_empty_sel PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_record_type_sel PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_element_sel PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chain_sel PASSED [ 27%] 1400s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.8 to 1.2-23844-selkwargs0] PASSED [ 27%] 1401s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 8e-1 to 1200e-3-23844-selkwargs1] PASSED [ 27%] 1401s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5--3-2-selkwargs2] PASSED [ 27%] 1401s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -3 : -5-0-selkwargs3] PASSED [ 27%] 1402s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 --3-2-selkwargs4] PASSED [ 27%] 1402s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5- -3-2-selkwargs5] PASSED [ 27%] 1402s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -5 - -3-2-selkwargs6] PASSED [ 27%] 1402s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10:3-34945-selkwargs7] PASSED [ 27%] 1403s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 :3-34945-selkwargs8] PASSED [ 27%] 1403s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10: 3-34945-selkwargs9] PASSED [ 27%] 1403s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 : 3-34945-selkwargs10] PASSED [ 27%] 1404s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass -10 -3-0-selkwargs11] PASSED [ 27%] 1405s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs12] PASSED [ 27%] 1405s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-5-selkwargs13] PASSED [ 27%] 1405s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 - 0.30000000000000004-10-selkwargs14] PASSED [ 27%] 1406s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-5-selkwargs15] PASSED [ 27%] 1406s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-5-selkwargs16] PASSED [ 27%] 1406s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3-10-selkwargs17] PASSED [ 27%] 1407s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.30000000000000004-10-selkwargs18] PASSED [ 27%] 1407s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[mass 0.3 0.30000000000000001-10-selkwargs19] PASSED [ 27%] 1407s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.3-10-selkwargs20] PASSED [ 27%] 1408s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-10-selkwargs21] PASSED [ 27%] 1408s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel[prop mass == 0.30000000000000004-5-selkwargs22] PASSED [ 27%] 1408s testsuite/MDAnalysisTests/core/test_atomselections.py::test_mass_sel_warning PASSED [ 27%] 1408s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -10 to 3-13] PASSED [ 27%] 1409s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -5--3-3] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_int_sel[resnum -3 : -5-0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_negative_resid PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity-5] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity true-5] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[not aromaticity-15] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel[aromaticity False-15] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_bool_sel_error SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_error_selection_for_strange_dtype PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_default_selection_on_ordered_unique_group[name N-ix0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_default_selection_on_ordered_unique_group[resname GLU-ix1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[name N-True-ix0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[name N-False-ix1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[resname GLU-True-ix2] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_unique_group[resname GLU-False-ix3] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-True-ix0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[name N-False-ix1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-True-ix2] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_unique_selection_on_ordered_group[resname GLU-False-ix3] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@@H](C(=O)O)N-S] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality[C[C@H](C(=O)O)N-R] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[R-1] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[S-1] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[R S-2] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_chirality_selection[S R-2] SKIPPED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[1-1-NH2] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[-1-1-OD2] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[0-34-N] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_atomselections.py::test_formal_charge_selection[-1 1-2-OD2] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_size PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_size_independent PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[_AR] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[RA] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[_RS] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR[SR] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[_AR] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[RA] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[_RS] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_AR_independent[SR] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_move_atom PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestTransTableCopy::test_move_residue PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA2] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA3] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA4] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA5] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA6] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA7] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA8] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA9] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA10] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA11] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA12] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA13] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA14] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA15] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA16] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA17] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA18] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA19] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_copy_attr[refTA20] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_n_attrs PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[names] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[masses] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[resids] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[bonds] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_topology_copy_unique_attrs[tt] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_universe_copy PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_positions PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_change_positions PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_topology PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::TestCopyUniverse::test_change_topology PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_copying.py::test_pdb_copy PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_total_frags[u0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_total_frags[u1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_external_ordering[u0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_external_ordering[u1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_internal_ordering[u0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_frag_internal_ordering[u1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_access[u0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_access[u1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_access[u0] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_access[u1] PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_empty_atomgroup_access PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragments_nobonds_NDE PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atom_fragment_nobonds_NDE PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragment_cache_invalidation_bond_making PASSED [ 27%] 1410s testsuite/MDAnalysisTests/core/test_fragments.py::TestFragments::test_atomgroup_fragment_cache_invalidation_bond_breaking PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_fragments.py::test_tpr_fragments PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_access[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_access[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_access[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_access[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_access[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_access[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_positions_setting[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_velocities_setting[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atomgroup_forces_setting[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_position_setting[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_velocity_setting[True-True-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-False] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-False-True] PASSED [ 27%] 1411s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupTrajAccess::test_atom_force_setting[True-True-True] PASSED [ 27%] 1412s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_get PASSED [ 27%] 1412s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_get PASSED [ 27%] 1412s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_force_set PASSED [ 27%] 1412s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_atom_velocity_set PASSED [ 27%] 1412s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_pos_iteration PASSED [ 27%] 1413s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_vel_iteration PASSED [ 27%] 1413s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtom_ForceVelocity::test_for_iteration PASSED [ 27%] 1413s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestGROVelocities::testParse_velocities PASSED [ 27%] 1413s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForces::testForces PASSED [ 27%] 1413s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestTRRForcesNativeUnits::testForces PASSED [ 27%] 1413s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_get_velocities PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_velocities PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupVelocities::test_set_velocities PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_get_forces PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_forces PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_group_traj_access.py::TestAtomGroupForces::test_set_forces PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_dimensions PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group0] PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group1] PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_isunique[group2] PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group0] PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group1] PASSED [ 27%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_nocache[group2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_create_unique_group_from_unique[group2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix0-unique_ix0-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_unique_returns_sorted_copy[ix1-unique_ix1-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix0-False-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix1-True-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_issorted[ix2-True-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix0-True-unique_ix0-True-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix1-False-unique_ix1-True-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix2-True-unique_ix2-False-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix3-False-unique_ix3-True-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix4-True-unique_ix4-False-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix5-False-unique_ix5-False-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix6-True-unique_ix6-False-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_asunique[ix7-False-unique_ix7-False-ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_sorted_unsorted_unique[ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupProperties::test_group_return_unsorted_sorted_unique[ugroup2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_passive_decorator[ag0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestEmptyAtomGroup::test_error_empty_group[ag0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_atoms[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_residues[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_n_segments[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_len[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[atom-array] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[residue-array] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_boolean_slicing[segment-array] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_indexerror[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl0-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl1-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl2-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl3-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl4-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl5-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl6-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl7-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl8-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl9-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl10-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl11-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl12-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[atom-sl13-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl0-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl1-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl2-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl3-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl4-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl5-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl6-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl7-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl8-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl9-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl10-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl11-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl12-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[residue-sl13-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl0-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl1-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl2-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl3-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl4-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl5-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl6-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl7-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl8-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl9-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl10-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl11-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl12-list] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_slice[segment-sl13-] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom-1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[atom--2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue-1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[residue--2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-0] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment-1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--1] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_integer_getitem[segment--2] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupSlicing::test_none_getitem[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a0-b0-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a1-b1-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a2-b2-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a3-b3-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a4-b4-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a5-b5-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a6-b6-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a7-b7-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a8-b8-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a9-b9-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a10-b10-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_addition[a11-b11-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a0-b0-c0-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a1-b1-c1-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a2-b2-c2-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a3-b3-c3-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a4-b4-c4-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a5-b5-c5-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a6-b6-c6-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a7-b7-c7-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a8-b8-c8-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a9-b9-c9-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a10-b10-c10-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a11-b11-c11-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a12-b12-c12-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a13-b13-c13-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a14-b14-c14-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a15-b15-c15-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a16-b16-c16-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a17-b17-c17-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a18-b18-c18-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a19-b19-c19-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a20-b20-c20-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a21-b21-c21-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a22-b22-c22-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_sum[a23-b23-c23-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a0-b0-c0-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a1-b1-c1-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a2-b2-c2-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a3-b3-c3-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a4-b4-c4-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a5-b5-c5-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a6-b6-c6-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a7-b7-c7-AtomGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a8-b8-c8-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a9-b9-c9-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a10-b10-c10-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a11-b11-c11-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a12-b12-c12-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a13-b13-c13-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a14-b14-c14-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a15-b15-c15-ResidueGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a16-b16-c16-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a17-b17-c17-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a18-b18-c18-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a19-b19-c19-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a20-b20-c20-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a21-b21-c21-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a22-b22-c22-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_bad_sum[a23-b23-c23-SegmentGroup] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[atom] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_false[segment] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-residue] PASSED [ 28%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[atom-segment] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-atom] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[residue-segment] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-atom] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_contains_wronglevel[segment-residue] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a0-b0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a1-b1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a2-b2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a3-b3] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a4-b4] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a5-b5] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a6-b6] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a7-b7] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a8-b8] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a9-b9] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a10-b10] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a11-b11] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a12-b12] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a13-b13] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a14-b14] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a15-b15] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a16-b16] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a17-b17] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a18-b18] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a19-b19] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a20-b20] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a21-b21] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a22-b22] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupAddition::test_crosslevel[a23-b23] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_atomgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_residuegroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_segmentgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_residue PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atom_to_segment PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_atomgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residue_to_segment PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_atomgroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segment_to_residuegroup PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_residuegroup_unique PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_atomgroup_to_segmentgroup_unique PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_segmentgroup_unique PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_residuegroup_to_atomgroup_listcomp PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_residuegroup_listcomp PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupLevelTransition::test_segmentgroup_to_atomgroup_listcomp PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_lt[abc2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_gt[abc2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_ge[abc2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_le[abc2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_neq[abc2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_eq[abc2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_sorting[abc2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x0-y0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x1-y1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x2-y2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x3-y3] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x4-y4] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_cmp[x5-y5] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x0-y0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x1-y1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x2-y2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x3-y3] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x4-y4] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestComponentComparisons::test_crosslevel_eq[x5-y5] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestMetaclassMagic::test_new_class PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids0] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids1] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string[segids2] PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_float_string PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_int_float PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBy::test_groupby_string_int PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atom_repr PASSED [ 29%] 1414s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residue_repr PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segment_repr PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_repr PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_short PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_atomgroup_str_long PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_repr PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_short PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_residuegroup_str_long PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_repr PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestReprs::test_segmentgroup_str PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len[segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_len_duplicated_and_scrambled[segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_equal[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group0] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group1] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_copy[group2] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issubset[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_subset[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_issuperset[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_is_strict_superset[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_concatenate[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_union[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_intersection[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_subtract[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_difference[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_symmetric_difference[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[simple-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-atoms] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-residues] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_isdisjoint[scrambled-segments] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left0-right0] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left1-right1] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left2-right2] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left3-right3] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left4-right4] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left5-right5] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left6-right6] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left7-right7] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left8-right8] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left9-right9] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left10-right10] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left11-right11] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left12-right12] PASSED [ 29%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left13-right13] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left14-right14] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left15-right15] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left16-right16] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left17-right17] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left18-right18] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left19-right19] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left20-right20] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left21-right21] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left22-right22] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left23-right23] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_failing_pairs[left24-invalid] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left0-right0] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left1-right1] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left2-right2] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left3-right3] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left4-right4] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left5-right5] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left6-right6] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left7-right7] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left8-right8] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left9-right9] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left10-right10] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_succeeding_pairs[left11-right11] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_only_same_level_different_universes PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-add-concatenate] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-sub-difference] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-and_-intersection] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-or_-union] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[atoms-xor-symmetric_difference] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-add-concatenate] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-sub-difference] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-and_-intersection] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-or_-union] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[residues-xor-symmetric_difference] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-add-concatenate] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-sub-difference] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-and_-intersection] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-or_-union] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupBaseOperators::test_shortcut_overriding[segments-xor-symmetric_difference] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_exists[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_equality[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[atoms-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[atoms-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[residues-atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[residues-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[segments-atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_difference_cross[segments-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestGroupHash::test_hash_diff_cross_universe[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAtomGroup::test_PDB_atom_repr PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_group_fail[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_setting_component_fails[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-name] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-resid] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[atoms-segid] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-name] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-resid] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[residues-segid] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-name] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-resid] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_group_set_singular[segments-segid] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_name PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_resid PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_atom_set_segid PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_name PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_resid PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_residue_set_segid PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_name PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_resid PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_segment_set_segid PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-names] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-resids] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[atoms-segids] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-names] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-resids] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[residues-segids] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-names] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-resids] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeSetting::test_component_set_plural[segments-segids] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_group[masses] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_group[altLocs] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_component[mass] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_present_topattr_component[altLoc] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_plural_topattr_from_component[masses-mass] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_plural_topattr_from_component[altLocs-altLoc] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[masses-mass] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_sing_topattr_from_group[altLocs-altLoc] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[elements-element] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[tempfactors-tempfactor] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_topattr_group[bonds-bonds] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_non_topattr PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_unwrap_without_bonds PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attr_method PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_get_absent_attrprop PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrprop_wrong_group PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_attrmethod_wrong_group PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[altlocs] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestAttributeGetting::test_wrong_name[alt_Locs] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_object_init[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_number_init[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[atoms] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestInitGroup::test_VE_no_uni_2[segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-fragments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-molecules] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-group] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-True-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-fragments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-molecules] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-group] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[True-False-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-fragments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-molecules] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-group] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-True-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-fragments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-molecules] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-group] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap_deprecation[False-False-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-fragments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-molecules] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-group] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-True-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-fragments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-molecules] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-residues] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-group] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[True-False-segments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-fragments] PASSED [ 30%] 1415s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-molecules] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-residues] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-group] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-True-segments] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-fragments] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-molecules] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-residues] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-group] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestDecorator::test_wrap_and_unwrap[False-False-segments] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[bonds] PASSED [ 30%] 1416s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[angles] PASSED [ 30%] 1417s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[dihedrals] PASSED [ 30%] 1417s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_not_outside[impropers] PASSED [ 30%] 1418s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[bonds-1] PASSED [ 30%] 1418s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[angles-3] PASSED [ 30%] 1419s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atom_outside[dihedrals-4] PASSED [ 30%] 1420s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[bonds-9] PASSED [ 30%] 1420s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[angles-15] PASSED [ 30%] 1420s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_not_outside[dihedrals-12] PASSED [ 30%] 1421s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[bonds-13] PASSED [ 30%] 1422s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[angles-27] PASSED [ 30%] 1422s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_connection_from_atoms_outside[dihedrals-38] PASSED [ 30%] 1422s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_invalid_connection_error PASSED [ 30%] 1423s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_get_empty_group[True] PASSED [ 30%] 1423s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsAtoms::test_get_empty_group[False] PASSED [ 30%] 1423s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[bonds-9] PASSED [ 30%] 1424s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[angles-14] PASSED [ 30%] 1425s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[dihedrals-9] PASSED [ 30%] 1425s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_not_outside[impropers-0] PASSED [ 30%] 1425s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[bonds-11] PASSED [ 30%] 1426s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[angles-22] PASSED [ 30%] 1427s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[dihedrals-27] PASSED [ 30%] 1427s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_res_outside[impropers-0] PASSED [ 30%] 1428s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[bonds-157] PASSED [ 30%] 1428s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[angles-290] PASSED [ 30%] 1428s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_not_outside[dihedrals-351] PASSED [ 30%] 1429s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[bonds-158] PASSED [ 30%] 1430s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[angles-294] PASSED [ 30%] 1430s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_connection_from_residues_outside[dihedrals-360] PASSED [ 30%] 1430s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_invalid_connection_error PASSED [ 30%] 1431s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_get_empty_group[True] PASSED [ 30%] 1432s testsuite/MDAnalysisTests/core/test_groups.py::TestGetConnectionsResidues::test_get_empty_group[False] PASSED [ 30%] 1432s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_bonds-9] PASSED [ 30%] 1432s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_angles-15] PASSED [ 31%] 1433s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_inside[intra_dihedrals-12] PASSED [ 31%] 1433s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[bonds-13] PASSED [ 31%] 1433s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[angles-27] PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_groups.py::test_topologygroup_gets_connections_outside[dihedrals-38] PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_ag_ix PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_rg_ix PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_sg_ix PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atom_ix_array PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residue_ix_array PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segment_ix_array PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_indices PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_residue_upshift PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_atomgroup_segment_upshift PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_atom_downshift PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_resindices PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_residuegroup_segment_upshift PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_atom_downshift PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_residue_downshift PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_index_dtype.py::test_segmentgroup_segindices PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_failure_singular PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_failure_multiple PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_requires_success PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_requires.py::TestRequires::test_failure_errormessage PASSED [ 31%] 1434s testsuite/MDAnalysisTests/core/test_residue.py::test_type PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residue.py::test_index PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residue.py::test_atom_order PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residue.py::test_residue_pickle PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::test_sequence_import_error SKIPPED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_string PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_SeqRecord PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_SeqRecord_default PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_Seq PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_nonIUPACresname_VE PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestSequence::test_format_TE PASSED [ 31%] 1435s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_newResidueGroup PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_n_atoms PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_n_residues PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_resids_dim PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_resnums_dim PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_segids_dim PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_len PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resids PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resids_updates_self PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_single PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_many PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resnum_ValueError PASSED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_single SKIPPED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_many SKIPPED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_resname_ValueError SKIPPED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_merge_residues SKIPPED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_set_masses SKIPPED [ 31%] 1436s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_atom_order PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_get_next_residue PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_get_prev_residue PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_residuegroup_pickle[name CA] PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_residuegroup.py::TestResidueGroup::test_residuegroup_pickle[segid 4AKE] PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_type PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_index PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_slicing PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_advanced_slicing PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_atom_order PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_residue_pickle[1] PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segment.py::TestSegment::test_residue_pickle[-1] PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_newSegmentGroup PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_n_atoms PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_n_residues PASSED [ 31%] 1437s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_resids_dim PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_resnums_dim PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_segids_dim PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segids PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segid_updates_ PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_set_segids_many PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_atom_order PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_segmentgroup.py::test_segmentgroup_pickle PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_a2r PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2a_1d PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2a_2d PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_r2s PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2r_1d PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2r_2d PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2a_1d PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_s2a_2d PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_move_atom_simple PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_move_residue_simple PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_lazy_building_RA PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_lazy_building_SR PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTransTable::test_serialization PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_single_residue PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residuegroup PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residue_list PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_residuegroup_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_residue_list_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residuegroup_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_residue_list_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_list_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atom_segment_NIE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_atomgroup_segment_NIE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_single_segment PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segmentgroup PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segment_list PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_segmentgroup_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_list_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_segmentgroup_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_list_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residue_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestLevelMoves::test_move_residuegroup_list_TE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_downshift_dtype_square PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_downshift_dtype_ragged PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_shape_square PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_shape_ragged PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_contents_square PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_contents_ragged PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_intra_values PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_intra_values_2 PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_end_values PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_end_values_2 PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestDownshiftArrays::test_missing_start_values_2 PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_segment_no_attrs PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_residue_no_attrs PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_residue_no_attrs_one_segment PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_ambiguous_segment_NDE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_missing_attr_NDE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_NDE_message PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_NDE_message_2 PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Residue_with_attrs PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_missing_attr_NDE_Segment PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Segment_NDE_message PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestAddingResidues::test_add_Segment_with_attr PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyGuessed::test_guessed PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyGuessed::test_read PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_make_topology_no_attrs PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_resindex_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topology.py::TestTopologyCreation::test_segindex_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_len PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atom_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_atoms PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_singular PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_plural PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_set_atoms_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_residues PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomAttr::test_get_segments PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_len PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atom_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_atoms PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_singular PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_plural PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_set_atoms_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_residues PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomids::test_get_segments PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_atom_indices PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_residue_indices PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestIndicesClasses::test_cant_set_segment_indices PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_len PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atom_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_atoms PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_singular PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_plural PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_set_atoms_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_residues PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_get_segments PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_prev_emptyresidue PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_next_emptyresidue PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_missing_values PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAtomnames::test_missing_value_label PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_len PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atom_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_atoms PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_singular PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_plural PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_set_atoms_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_residues PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segments PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_get_segment PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestMasses::test_missing_masses PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_len PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atom_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_atoms PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_singular PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_plural PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_set_atoms_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_residues PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segments PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCharges::test_get_segment PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_len PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residue_VE PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atoms PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_atom PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_residues PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_singular PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_plural PASSED [ 31%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_set_residues_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResidueAttr::test_get_segments PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_len PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residue_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_atoms PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_atom PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_residues PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_singular PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_plural PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_set_residues_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResnames::test_get_segments PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_len PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residue_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_atoms PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_atom PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_residues PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_singular PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_plural PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_set_residues_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestICodes::test_get_segments PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_len PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residue_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atoms PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_atom PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_residues PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_singular PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_plural PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_get_segments PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_atoms XFAIL [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestResids::test_set_residues PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_len PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segment_VE PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_atoms PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_residues PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_get_segments PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_singular PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_plural PASSED [ 32%] 1438s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestSegmentAttr::test_set_segments_VE PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_principal_axes PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_principal_axes_handedness PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_align_principal_axes_with_self PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestAttr::test_align_principal_axes_with_x PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-0-level0] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-1-level1] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[0-names-2-level2] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-0-level0] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-1-level1] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[1-resids-2-level2] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-0-level0] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-1-level1] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestCrossLevelAttributeSetting::test_set_crosslevel[2-segids-2-level2] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_record_types_default PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_encoding PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_residue_record_types PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestRecordTypes::test_segment_record_types PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_static_typing PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_static_typing_from_empty PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-center_of_mass] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-center_of_charge] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[atoms-total_charge] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_methods[residues-total_charge] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_property[universe-models] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_stub_transplant_property[atoms-n_fragments] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::test_warn_selection_for_strange_dtype PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_get_group PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_get_atom PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_set_group PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactors_set_atom PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestDeprecateBFactor::test_deprecate_bfactor_sel PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_residue[ResA] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_residue[ResB] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_segment[SegA] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_add_segment[SegB] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::TestStringInterning::test_issue3437 PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[group] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[segments] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[residues] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[molecules] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc[fragments] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[group] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[segments] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[residues] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[molecules] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_wrap[fragments] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[group] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[segments] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[residues] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[molecules] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyattrs.py::Testcenter_of_charge::test_coc_unwrap[fragments] PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_repr PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_eq PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ne PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_gt PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_lt PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_iter PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_len PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_hash PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_indices PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_partner PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_partner_VE PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_bondlength PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_bondrepr PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle_repr PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_angle_180 PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_dihedral PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_dihedral_repr PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_improper PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_improper_repr PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_repr PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_repr_VE PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_partner PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_ureybradley_distance PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyObjects::test_cmap_repr_VE PASSED [ 32%] 1439s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_len PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_iter PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_keyerror PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_td_universe PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_types PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bonds_contains PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_uniqueness PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_reversal PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_no_reversal PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_types PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_contains PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_uniqueness PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angles_reversal PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_types PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_contains PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_uniqueness PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedrals_reversal PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_creation_TG PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_tg_creation_bad_btype PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bond_tg_creation_notype PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_angle_tg_creation_notype PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_dihedral_tg_creation_notype PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_guessed_tg PASSED [ 32%] 1440s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_guessed_tg_2 PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_equality PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_create_TopologyGroup PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[bonds] PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[angles] PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[dihedrals] PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_loose_intersection[impropers] PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_strict_intersection PASSED [ 32%] 1441s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TopologyGroups PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_empty_to_TG PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TO_to_empty_TG PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_TG_to_empty_TG PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_singleitem PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_add_wrongtype_TopologyGroup PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_bad_add_TopologyGroup PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_single PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_slice PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_fancy PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_bool PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_TG_getitem_bool_IE PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom1 PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom2 PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom3_IE PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom3 PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom4_IE PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup::test_atom4 PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_bonds PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_bonds PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_angles PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_angles PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_wrong_type_dihedrals PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_dihedrals PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::TestTopologyGroup_Cython::test_right_type_impropers PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_bond_length_pbc PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_cross_universe_eq PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_zero_size_TG_indices_bonds PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_topologyobjects.py::test_zero_size_TG_indices_angles PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_topology_stringio PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_trajectory_stringio PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_make_universe_stringio_no_format PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_no_trajectory_AE PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_unrecognizedformat_VE PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_unrecognizedformat_VE_msg PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_IE PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_topology_IE_msg PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_filename_IE_msg PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_invalidfile_IE_msg PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_Universe_invalidpermissionfile_IE_msg PASSED [ 32%] 1442s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_VE PASSED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_memory_reader_success PASSED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_load_new_memory_reader_fails PASSED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_kwargs PASSED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_topology_class_with_coords PASSED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseCreation::test_universe_empty_ROMol SKIPPED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_default SKIPPED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_from_bad_smiles SKIPPED [ 32%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_no_Hs SKIPPED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_gencoords_without_Hs_error SKIPPED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_generate_coordinates_numConfs SKIPPED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_rdkit_kwargs SKIPPED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverseFromSmiles::test_coordinates SKIPPED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_bad_topology PASSED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new PASSED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_returns_Universe PASSED [ 33%] 1443s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_None_returns_Universe PASSED [ 33%] 1444s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_new_TypeError PASSED [ 33%] 1444s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_structure PASSED [ 33%] 1444s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_multiple_list PASSED [ 33%] 1444s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_load_multiple_args PASSED [ 33%] 1444s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_pickle PASSED [ 33%] 1444s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[int] PASSED [ 33%] 1444s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[float32] PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestUniverse::test_set_dimensions[float64] PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestTransformations::test_callable PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestTransformations::test_list PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_automatic_type_and_mass_guessing PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_no_type_and_mass_guessing PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_invalid_context PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_invalid_attributes PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_guess_masses_before_types PASSED [ 33%] 1445s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessTopologyAttrs::test_guessing_read_attributes PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessMasses::test_universe_loading_no_warning PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_no_vdwradii PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_with_vdwradii PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_off PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_universe_guess_bonds_arguments PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.55-0.1-2] PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.9-1.6-1] PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.5-0.2-2] PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds[0.1-0.1-0] PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds_no_vdwradii PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_atomgroup_guess_bonds_with_vdwradii PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_guess_bonds_periodicity PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestGuessBonds::test_guess_read_bonds PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_w_timeseries PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_wo_timeseries PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_w_timeseries_frame_interval PASSED [ 33%] 1446s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_reader_wo_timeseries_frame_interval PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_existing_universe PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_frame_interval_convention PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_with_start_stop PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_without_start PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_without_stop PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_without_start_stop PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_with_start_stop PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_step_dt PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_negative_start PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_slicing_negative_stop PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_transfer_to_memory_kwargs PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestInMemoryUniverse::test_in_memory_kwargs PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader_singleframe PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_reader_singleframe_2 PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_parser PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestCustomReaders::test_custom_both PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_TA_fail PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_nodefault_fail PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charge-charges-0.0_0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charges-charges-0.0_0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[name-names-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[names-names-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[type-types-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[types-types-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[element-elements-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[elements-elements-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radius-radii-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[radii-radii-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainID-chainIDs-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[chainIDs-chainIDs-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactor-tempfactors-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[tempfactors-tempfactors-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[mass-masses-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[masses-masses-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charge-charges-0.0_1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[charges-charges-0.0_1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactor-bfactors-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[bfactors-bfactors-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancy-occupancies-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[occupancies-occupancies-0.0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLoc-altLocs-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[altLocs-altLocs-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resid-resids-1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resids-resids-1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resname-resnames-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnames-resnames-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnum-resnums-1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[resnums-resnums-1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[icode-icodes-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[icodes-icodes-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[segid-segids-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_charges[segids-segids-] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[bonds-values2] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[angles-values3] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[dihedrals-values4] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection[impropers-values5] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-values0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-values1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-rubbish] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[bonds-values3] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[angles-values4] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[angles-rubbish] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[dihedrals-values6] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_connection_error[impropers-values7] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyAttr::test_add_attr_length_error PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_TA_fail PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_absent_fail PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_wrongtype_fail PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charge-charges] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[charges-charges] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_str[bonds-bonds] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_transplants PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr_error PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_attr_from_ag PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestDelTopologyAttr::test_del_func_from_universe PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[bonds-values0] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[angles-values1] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[dihedrals-values2] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_empty[impropers-values3] PASSED [ 33%] 1447s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_reversed_duplicates PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[bonds-values0] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[angles-values1] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[dihedrals-values2] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_indices_to_populated[impropers-values3] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[bonds-values0] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[angles-values1] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[dihedrals-values2] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_empty[impropers-values3] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[bonds-values0] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[angles-values1] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[dihedrals-values2] PASSED [ 33%] 1448s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_to_populated[impropers-values3] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[angles-values1] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[bonds-values0] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[angles-values1] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[dihedrals-values2] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_to_populated[impropers-values3] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[bonds-values0] PASSED [ 33%] 1449s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[angles-values1] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologyobjects_wrong_universe_error[impropers-values3] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[bonds-values0] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[angles-values1] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[dihedrals-values2] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroups_to_populated[impropers-values3] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[angles-values1] PASSED [ 33%] 1450s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[bonds-values0] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[angles-values1] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[dihedrals-values2] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_topologygroup_different_universe[impropers-values3] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[impropers-values0] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[dihedrals-values1] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[angles-values2] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_topologygroup_error[bonds-values3] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[bonds-values0] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[angles-values1] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[dihedrals-values2] PASSED [ 33%] 1451s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_nonexistent_indices_error[impropers-values3] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[bonds-2] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[angles-3] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_wrong_number_of_atoms_error[impropers-4] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_add_bonds_refresh_fragments PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[angles-values1] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestAddTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[bonds-values0] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[angles-values1] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[dihedrals-values2] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_indices[impropers-values3] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[bonds-values0] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[angles-values1] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[dihedrals-values2] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_indices[impropers-values3] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[bonds-values0] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[angles-values1] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[dihedrals-values2] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_atomgroup[impropers-values3] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[bonds-values0] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[angles-values1] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[dihedrals-values2] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_atomgroup_wrong_universe_error[impropers-values3] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[bonds-values0] PASSED [ 33%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_atomgroup[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_mixed_type[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologyobjects[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologyobjects_wrong_universe[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_valid_topologygroup[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_wrong_universe_error[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_topologygroup_different_universe[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[bonds-2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[angles-3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[dihedrals-4] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_wrong_number_of_atoms_error[impropers-4] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_missing_attr[impropers-values3] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_bonds_refresh_fragments PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_all_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/1hvr.pdb-72] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_delete_all_bonds[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/conect_parsing.pdb-8] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[bonds-values0] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[angles-values1] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[dihedrals-values2] PASSED [ 34%] 1452s testsuite/MDAnalysisTests/core/test_universe.py::TestDeleteTopologyObjects::test_roundtrip[impropers-values3] PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_length PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_all_coordinates_frame PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestAllCoordinatesKwarg::test_second_frame PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_extra PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_resindex_warning PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_segindex_warning PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_no_trivial_warning PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_multiple_frames PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_trajectory_iteration PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_velocities PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_forces PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_no_atoms PASSED [ 34%] 1453s testsuite/MDAnalysisTests/core/test_universe.py::TestEmpty::test_empty_creation_raises_error PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_universe.py::test_deprecate_b_tempfactors PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_universe.py::TestOnlyTopology::test_only_top PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-com-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-cog-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[False-None-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-com-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-cog-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_pass[True-None-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-com-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-fragments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-molecules-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-residues-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-group-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-residues] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-cog-segments-segments] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-atoms] PASSED [ 34%] 1454s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-residues] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-fragments-segments] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-atoms] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-residues] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-molecules-segments] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-atoms] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-residues] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-residues-segments] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-atoms] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-residues] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-group-segments] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-atoms] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-residues] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[False-None-segments-segments] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-atoms] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-residues] PASSED [ 34%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-com-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-cog-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_wrap_unwrap_cycle[True-None-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-fragments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-molecules] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-group] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-com-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-fragments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-molecules] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-group] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-cog-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-fragments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-molecules] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-group] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[False-None-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-fragments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-molecules] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-group] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-com-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-fragments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-molecules] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-group] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-cog-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-fragments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-molecules] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-group] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_partial_frags[True-None-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-com-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-cog-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[False-None-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-com-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-cog-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_empty_group[True-None-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-com-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-molecules-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-residues-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-group-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-cog-segments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-residues] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-fragments-segments] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-atoms] PASSED [ 35%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-molecules-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-residues-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-group-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[False-None-segments-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-fragments-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-molecules-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-residues-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-group-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-com-segments-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-fragments-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-molecules-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-residues-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-group-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-cog-segments-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-fragments-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-molecules-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-residues-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-group-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-atoms] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_duplicates[True-None-segments-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-fragments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-molecules] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-group] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[False-segments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-fragments] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-molecules] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-residues] PASSED [ 36%] 1455s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-group] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_com_cog_difference[True-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[fragments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[molecules-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[residues-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[group-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_zero_mass_exception_safety[segments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[fragments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[molecules-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[residues-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[group-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_reference_exception_safety[segments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[com-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[cog-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_wrong_compound_exception_safety[None-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[fragments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[molecules-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[residues-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[group-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_masses_exception_safety[segments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-fragments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-molecules-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-residues-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-group-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[com-segments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-fragments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-molecules-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-residues-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-group-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[cog-segments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-fragments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-molecules-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-residues-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-group-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_bonds_exception_safety[None-segments-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[com-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[cog-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-atoms] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-residues] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::TestUnwrap::test_unwrap_no_molnums_exception_safety[None-segments] PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_unwrap.py::test_uncontiguous PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_update PASSED [ 36%] 1456s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_compounded_update PASSED [ 36%] 1457s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update PASSED [ 36%] 1457s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_chained_update2 PASSED [ 36%] 1457s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_slice_is_static PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_kwarg_check PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_atoms PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelection::test_copy PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUpdatingSelectionNotraj::test_update PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_creating PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestUAGCallCount::test_updated_when_next PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_nested_uags PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::TestDynamicUAG::test_driveby PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_representations PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_updating_atomgroup.py::test_empty_UAG PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-atoms] PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-residues] PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-atoms-segments] PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-atoms] PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-residues] PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-group-segments] PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-atoms] PASSED [ 36%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-segments-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-residues-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-molecules-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-com-fragments-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-atoms-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-group-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-segments-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-residues-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-molecules-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[False-cog-fragments-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-atoms-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-group-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-segments-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-residues-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-molecules-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-com-fragments-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-atoms-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-residues] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-group-segments] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-atoms] PASSED [ 37%] 1458s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_pass[True-cog-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-group-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-com-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-group-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[False-cog-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-group-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-com-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-group-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_wrap_cycle[True-cog-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-group-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-com-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-group-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[False-cog-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-group-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-segments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-residues-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-molecules-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-com-fragments-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-atoms-segments] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-atoms] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-residues] PASSED [ 37%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-group-segments] PASSED [ 38%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-atoms] PASSED [ 38%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-residues] PASSED [ 38%] 1459s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_partial_compound[True-cog-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-com-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[False-cog-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-com-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_empty_group[True-cog-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-com-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[False-cog-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-com-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_duplicates[True-cog-fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-group] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-molecules] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[False-fragments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-group] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-molecules] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_com_cog_difference[True-fragments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[residues-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[molecules-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_zero_mass_exception_safety[fragments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[atoms-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[group-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-residues] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[segments-segments] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-atoms] PASSED [ 38%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[residues-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[molecules-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_center_exception_safety[fragments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[com-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_wrong_compound_exception_safety[cog-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[atoms-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[group-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[segments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[residues-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[molecules-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_unwrap_no_masses_exception_safety[fragments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-atoms-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-group-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-segments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-residues-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-molecules-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[com-fragments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-atoms-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-group-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-segments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-residues-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-molecules-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_bonds_exception_safety[cog-fragments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-atoms-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-group-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-segments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-residues-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-molecules-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[com-fragments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-atoms-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-group-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-segments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-residues-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-molecules-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-atoms] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-residues] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrap::test_wrap_no_molnums_exception_safety[cog-fragments-segments] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box0] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_box_fail[box1] PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_small_box PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_large_box PASSED [ 39%] 1460s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_atoms PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[com] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_group[cog] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[com] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_residues[cog] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[com] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_segments[cog] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[com] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/core/test_wrap.py::TestWrapTRZ::test_wrap_fragments[cog] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-False] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-True] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_is_periodic[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-True] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coordsshape[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-unit_cell0] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-unit_cell1] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_unit_cell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-unit_cell2] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_over_max PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_last PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_closed PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_after_read PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_pickle_immediately PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[10] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[42] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_normal[21] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_seek_negative PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_iteration PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_open_wrong_mode PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_raise_not_existing PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_zero_based_frames_counting PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-3341] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-5545] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-375] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_closed PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-98] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-1] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_length_traj[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-10] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_write_mode_file PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_iterating_twice PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-* DIMS ADK SEQUENCE FOR PORE PROGRAM * WRITTEN BY LIZ DENNING (6.2008) * DATE: 6/ 6/ 8 17:23:56 CREATED BY USER: denniej0 ] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-Created by DCD pluginREMARKS Created 06 July, 2014 at 17:29Y5~CORD,] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_header_remarks[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-* CHARMM TRICLINIC BOX TESTING * (OLIVER BECKSTEIN 2014) * BASED ON NPTDYN.INP : SCOTT FELLER, NIH, 7/15/95 * TEST EXTENDED SYSTEM CONSTANT PRESSURE AND TEMPERATURE * DYNAMICS WITH WATER BOX. * DATE: 7/ 7/14 13:59:46 CREATED BY USER: oliver ] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frames0] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frames1] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_read_coord_values[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frames2] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_adk_coords.npy-frame_idx0] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_NAMD_coords.npy-frame_idx1] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/legacy_DCD_c36_coords.npy-frame_idx2] PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_no_header PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_twice PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_header_wrong_mode PASSED [ 39%] 1461s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_mode PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_remarks_property PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_header PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_num_frames PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_dcd_coordinate_data_shape PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_seek PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_coord_match PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_written_unit_cell PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int32] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int64] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float32] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float64] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[int] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_all_dtypes[float] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[array] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_array_like[list] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_xyz PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_wrong_shape_box PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_relative_frame_sizes[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_file_size_breakdown[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/tip125_tric_C36.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_nframessize_int[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/SiN_tric_namd.dcd] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice0-98] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice1-98] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice2-98] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice3-98] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice4-98] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice5-2] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice6-10] PASSED [ 39%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice7-8] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice8-1] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice9-0] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice10-1] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice11-1] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice12-2] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice13-1] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice14-1] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice15-2] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice16-4] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice17-3] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_slices[slice18-2] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fac-shape0] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[fca-shape1] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[afc-shape2] PASSED [ 40%] 1462s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[acf-shape3] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[caf-shape4] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_order[cfa-shape5] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_readframes_atomindices[indices2] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libdcd.py::test_write_random_unitcell PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_natoms[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_over_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_after_iteration[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_zero_based_frame_tell[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_double_iter[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_seek_negative[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_len[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_raise_not_existing[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_open_wrong_mode[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_read_write_mode_file[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_last_frame[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_closed[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-XTCFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestCommonAPI::test_pickle_immediately[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-TRRFile] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_offset[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_set_offsets[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_fail_wrong_offsets[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_overflow[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_all_bytes[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc-offsets0] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::TestOffsets::test_seek_tell_largefile[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr-offsets1] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_steps[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_time[XTCFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/xtc_test_only_10_frame_10_atoms.xtc] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_time[TRRFile-/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/trr_test_only_10_frame_10_atoms.trr] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_box_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_xyz_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_velocities_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_forces_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_lmbda_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_prec_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int32] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int64] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float32] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float64] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[int] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_dtype[float] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[array] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_xtc_array_like[list] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_prec PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_different_box_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_x_xtc PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_prec PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_step_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_time_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_box_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_xyx_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_velocities_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_written_forces_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int32] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int64] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float32] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float64] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[int] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_dtype[float] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_array_like[array] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_trr_array_like[list] PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_box_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_natoms PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_x_trr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_v PASSED [ 40%] 1463s testsuite/MDAnalysisTests/formats/test_libmdaxdr.py::test_write_different_f PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_get_guesser PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_get_guesser_with_universe PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_invalid_attribute PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_attribute_with_missing_parent_attr PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_force_guessing PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_partial_guessing PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_force_guess_priority PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_partial_guess_attr_with_unknown_no_value_label PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_existing_read PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_existing_in_universe PASSED [ 40%] 1463s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_force PASSED [ 40%] 1469s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_out_of_order_init PASSED [ 40%] 1475s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_topology_objects_out_of_order_guess PASSED [ 40%] 1475s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_force_guess_overwrites_existing_bonds PASSED [ 40%] 1499s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guessing_angles_respects_bond_kwargs PASSED [ 40%] 1501s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guessing_dihedrals_respects_bond_kwargs PASSED [ 40%] 1501s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_unsupported_attribute PASSED [ 40%] 1502s testsuite/MDAnalysisTests/guesser/test_base.py::TestBaseGuesser::test_guess_singular PASSED [ 40%] 1504s testsuite/MDAnalysisTests/guesser/test_base.py::test_Universe_guess_bonds_deprecated PASSED [ 40%] 1504s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_dims.dcd] PASSED [ 40%] 1504s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.xtc] PASSED [ 40%] 1504s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[universe_input2] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_coordinates[/tmp/autopkgtest.A6nBaZ/build.Bph/src/testsuite/MDAnalysisTests/data/adk_oplsaa.pdb] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_base.py::test_universe_creation_from_specific_array PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_from_universe PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_from_guesser_object PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_warn PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_get_atom_mass[H-1.008] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_get_atom_mass[XYZ-0.0] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_atom_mass PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessMasses::test_guess_masses_with_no_reference_elements PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_types PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element_empty PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element_singledigit PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_atom_element_1H PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_partial_guess_elements PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_elements_from_no_data PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[AO5*-O] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[F--F] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[HB1-H] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[OC2-O] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[1he2-H] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[3hg2-H] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[OH--O] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[HO-H] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[he-H] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[zn-ZN] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[Ca2+-CA] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::TestGuessTypes::test_guess_element_from_name[CA-C] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_charge PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_Error PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bond_vdw_error PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bond_coord_error PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_angles_with_no_bonds PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_impropers PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_dihedrals_with_no_angles PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_impropers_with_angles PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_impropers_with_no_angles PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water_fudge_factor_passed[0-0] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water_fudge_factor_passed[0.55-4] PASSED [ 40%] 1505s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_water_fudge_factor_passed[200-6] PASSED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_adk PASSED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_bonds_peptide PASSED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[c1ccccc1] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[C1=CC=CC=C1] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[CCO] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[c1ccccc1Cc1ccccc1] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_aromaticities[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[c1ccccc1] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[C1=CC=CC=C1] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[CCO] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[c1ccccc1Cc1ccccc1] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_guess_gasteiger_charges[CN1C=NC2=C1C(=O)N(C(=O)N2C)C] SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/guesser/test_default_guesser.py::test_aromaticity SKIPPED [ 40%] 1506s testsuite/MDAnalysisTests/import/test_import.py::TestMDAImport::test_os_dot_fork_not_called PASSED [ 40%] 1506s testsuite/MDAnalysisTests/import/test_import.py::TestMDAImport::test_os_dot_fork_not_none PASSED [ 40%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q0-res0-b0] PASSED [ 40%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q0-res0-b1] PASSED [ 40%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q1-res1-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q1-res1-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q2-res2-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q2-res2-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q3-res3-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q3-res3-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q4-res4-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q4-res4-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q5-res5-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q5-res5-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q6-res6-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q6-res6-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q7-res7-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q7-res7-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q8-res8-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_augment[q8-res8-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres0-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres0-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres1-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres1-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres2-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres2-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres3-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres3-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres4-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres4-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres5-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres5-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres6-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres6-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres7-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres7-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres8-b0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_augment.py::test_undoaugment[qres8-b1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values3] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values4] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_unique_int_1d[values5] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges0-ref0] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges1-ref1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges2-ref2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_find_fragments[edges3-ref3] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d_VE[arr10-arr20] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_cutil.py::test_in2d_VE[arr11-arr21] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_pass PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_wrong_shape PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCheckResultArray::test_check_result_array_wrong_dtype PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::test_transform_StoR_pass[float32] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::test_transform_StoR_pass[float64] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_noresults PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-1-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box0-100-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-1-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-box1-100-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-1-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-bruteforce-None-100-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-1-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box0-100-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-1-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-box1-100-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-1-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-pkdtree-None-100-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-1-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_1_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box0-100-query_2_atomgroup] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_1] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_2] PASSED [ 41%] 1506s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-box1-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[None-nsgrid-None-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box0-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-box1-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-bruteforce-None-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box0-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-box1-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-pkdtree-None-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box0-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-box1-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-1-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_1] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_2] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_1_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_checkbrute[0.1-nsgrid-None-100-query_2_atomgroup] PASSED [ 41%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box0-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-box1-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-bruteforce-None-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box0-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-box1-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-pkdtree-None-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box0-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-box1-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[None-nsgrid-None-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box0-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-box1-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-bruteforce-None-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box0-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-box1-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-pkdtree-None-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box0-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-box1-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-1-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_2] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_1_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_capped_distance_return[0.1-nsgrid-None-100-query_2_atomgroup] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-bruteforce-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-pkdtree-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-None-nsgrid-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-bruteforce-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-pkdtree-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-False-0.1-nsgrid-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-bruteforce-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-None-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-pkdtree-None-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box0-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box0-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box1-1] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-box1-100] PASSED [ 42%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-None-nsgrid-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-bruteforce-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-pkdtree-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[False-True-0.1-nsgrid-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-bruteforce-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-pkdtree-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-None-nsgrid-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-bruteforce-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-pkdtree-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-False-0.1-nsgrid-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-bruteforce-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-pkdtree-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-None-nsgrid-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-bruteforce-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-pkdtree-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box0-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-box1-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_self_capped_distance[True-True-0.1-nsgrid-None-100] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.02-_bruteforce_capped_self-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[1-0.2-_bruteforce_capped_self-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.02-_pkdtree_capped_self-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selfselection[600-0.2-_nsgrid_capped_self-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.02-_bruteforce_capped-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[1-0.2-_bruteforce_capped-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.02-_nsgrid_capped-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[200-0.35-_bruteforce_capped-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-None] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box1] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestCappedDistances::test_method_selection[10000-0.35-_nsgrid_capped-box2] PASSED [ 43%] 1507s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-serial] PASSED [ 43%] 20289s testsuite/MDAnalysisTests/lib/test_distances.py::TestDistanceArray::test_noPBC[ref_system-openmp] autopkgtest [01:56:30]: ERROR: timed out on command "su -s /bin/bash ubuntu -c set -e; exec /tmp/autopkgtest.A6nBaZ/wrapper.sh --artifacts=/tmp/autopkgtest.A6nBaZ/test-mdanalysis-artifacts --chdir=/tmp/autopkgtest.A6nBaZ/build.Bph/src --env=AUTOPKGTEST_TESTBED_ARCH=amd64 --env=AUTOPKGTEST_TEST_ARCH=amd64 --env=DEB_BUILD_OPTIONS=parallel=4 --env=DEBIAN_FRONTEND=noninteractive --env=LANG=C.UTF-8 --unset-env=LANGUAGE --unset-env=LC_ADDRESS --unset-env=LC_ALL --unset-env=LC_COLLATE --unset-env=LC_CTYPE --unset-env=LC_IDENTIFICATION --unset-env=LC_MEASUREMENT --unset-env=LC_MESSAGES --unset-env=LC_MONETARY --unset-env=LC_NAME --unset-env=LC_NUMERIC --unset-env=LC_PAPER --unset-env=LC_TELEPHONE --unset-env=LC_TIME --script-pid-file=/tmp/autopkgtest_script_pid --source-profile --stderr=/tmp/autopkgtest.A6nBaZ/test-mdanalysis-stderr --stdout=/tmp/autopkgtest.A6nBaZ/test-mdanalysis-stdout --tmp=/tmp/autopkgtest.A6nBaZ/autopkgtest_tmp --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 --make-executable=/tmp/autopkgtest.A6nBaZ/build.Bph/src/debian/tests/test-mdanalysis -- /tmp/autopkgtest.A6nBaZ/build.Bph/src/debian/tests/test-mdanalysis" (kind: test) 20290s autopkgtest [01:56:31]: test test-mdanalysis: -----------------------] 20298s autopkgtest [01:56:39]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 20298s test-mdanalysis FAIL timed out 20300s autopkgtest [01:56:41]: @@@@@@@@@@@@@@@@@@@@ summary 20300s test-mdanalysis FAIL timed out 20319s nova [W] Skipping flock for amd64 20319s Creating nova instance adt-plucky-amd64-mdanalysis-20250315-201821-juju-7f2275-prod-proposed-migration-environment-2-2f4bf406-03a1-4e9f-b101-87bb648a1002 from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)... 20319s nova [W] Timed out waiting for aee94239-304e-4824-8c73-f7c354627150 to get deleted.