0s autopkgtest [08:53:25]: starting date and time: 2024-11-13 08:53:25+0000 0s autopkgtest [08:53:25]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [08:53:25]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3jrhmm93/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-22.secgroup --name adt-plucky-amd64-mdanalysis-20241113-085325-juju-7f2275-prod-proposed-migration-environment-15-229a4526-5d6c-42d0-b549-bece3492d4d2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 75s autopkgtest [08:54:40]: testbed dpkg architecture: amd64 75s autopkgtest [08:54:40]: testbed apt version: 2.9.8 75s autopkgtest [08:54:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 76s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 76s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 76s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 76s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 76s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 76s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 76s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 76s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 76s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 76s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 76s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 76s Fetched 2173 kB in 0s (7165 kB/s) 76s Reading package lists... 77s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Calculating upgrade... 79s The following NEW packages will be installed: 79s python3.13-gdbm 79s The following packages will be upgraded: 79s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 79s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 253 kB of archives. 79s After this operation, 147 kB of additional disk space will be used. 79s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 79s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 79s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 79s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 79s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 79s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 79s Fetched 253 kB in 0s (7740 kB/s) 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 79s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 79s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 79s Setting up python3-minimal (3.12.7-1) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 79s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 80s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 80s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 80s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 80s Selecting previously unselected package python3.13-gdbm. 80s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 80s Unpacking python3.13-gdbm (3.13.0-2) ... 80s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 80s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 80s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 80s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 80s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 80s Setting up python3.13-gdbm (3.13.0-2) ... 80s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 80s Setting up python3 (3.12.7-1) ... 80s Setting up python3-gdbm:amd64 (3.12.7-1) ... 80s Processing triggers for man-db (2.12.1-3) ... 81s Processing triggers for libc-bin (2.40-1ubuntu3) ... 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 81s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 81s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 81s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 83s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s autopkgtest [08:54:50]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 85s autopkgtest [08:54:50]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis 87s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (dsc) [2889 B] 87s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (tar) [47.0 MB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (diff) [10.9 kB] 87s gpgv: Signature made Sat Aug 10 17:37:57 2024 UTC 87s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 87s gpgv: issuer "dparsons@debian.org" 87s gpgv: Can't check signature: No public key 87s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.7.0-5.dsc: no acceptable signature found 88s autopkgtest [08:54:53]: testing package mdanalysis version 2.7.0-5 88s autopkgtest [08:54:53]: build not needed 89s autopkgtest [08:54:54]: test test-mdanalysis: preparing testbed 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 92s The following additional packages will be installed: 92s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 92s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 92s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 92s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 92s fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-14 92s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 92s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian libaec0 92s libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl 92s libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 92s libfontenc1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 92s libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libimagequant0 libisl23 92s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 92s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 92s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libnetcdf19t64 92s libopenjp2-7 libpixman-1-0 libpython3-all-dev libpython3-dev 92s libpython3.12-dev libpython3.13 libpython3.13-dev libpython3.13-minimal 92s libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 92s libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 92s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 92s libxft2 libxrender1 libxslt1.1 libxss1 m4 po-debconf 92s pybuild-plugin-pyproject python-matplotlib-data python-mdanalysis-doc 92s python3-alabaster python3-all python3-all-dev python3-appdirs 92s python3-biopython python3-brotli python3-build python3-cairo python3-cftime 92s python3-citeproc python3-contourpy python3-cycler python3-dateutil 92s python3-decorator python3-defusedxml python3-dev python3-docutils 92s python3-duecredit python3-fasteners python3-fonttools python3-freetype 92s python3-fs python3-griddataformats python3-gsd python3-h5py 92s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 92s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 92s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 92s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 92s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 92s python3-netcdf4 python3-networkx python3-numpy python3-packaging 92s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 92s python3-pluggy python3-pybtex python3-pybtex-docutils 92s python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo 92s python3-roman python3-scipy python3-seaborn python3-six python3-sklearn 92s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 92s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 92s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 92s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 92s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 92s python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk 92s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 92s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 92s Suggested packages: 92s autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales 92s cpp-14-doc cython-doc dh-make flit fonts-freefont-otf | fonts-freefont-ttf 92s fonts-texgyre g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 92s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 92s gettext-doc libasprintf-dev libgettextpo-dev libjs-jquery-ui-docs 92s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils 92s libstdc++-14-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler 92s gcj-jdk m4-doc libmail-box-perl bwa clustalo clustalw dialign dssp emboss 92s fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb 92s python3-rdflib python3-psycopg2 raxml samtools t-coffee wise python3-pip 92s python3-venv python-build-doc python-cycler-doc docutils-doc 92s fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 92s texlive-latex-base texlive-latex-recommended python-gsd-doc python-h5py-doc 92s python-hypothesis-doc python-installer-doc python-joblib-doc 92s python-latexcodec-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 92s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 92s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 92s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 92s texlive-latex-extra python-mpmath-doc python3-gmpy2 jupyter python3-gdal 92s python3-pydot python3-pygraphviz gfortran python-numpy-doc python-pandas-doc 92s python3-statsmodels python-pil-doc python-pybtex-doc 92s python-pybtex-docutils-doc pdf-viewer python3-egenix-mxtexttools 92s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 92s python-sklearn-doc python3-stemmer python-sortedcontainers-doc dvisvgm 92s fonts-freefont-otf imagemagick-6.q16 latexmk sphinx-doc tex-gyre 92s texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic 92s python-sphinxcontrib.bibtex-doc python-sympy-doc tix python3-tk-dbg 92s python3.13-venv python3.13-doc binfmt-support sgml-base-doc 92s Recommended packages: 92s libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev 92s libmail-sendmail-perl python-biopython-doc ncbi-blast+ libpaper-utils 92s python3-click python3-simplejson python3-psutil python3-bs4 92s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 92s python3-odf python3-openpyxl python3-tables python3-numba python3-olefile 92s fonts-dejavu-extra isympy-common 92s The following NEW packages will be installed: 92s autoconf automake autopkgtest-satdep autopoint autotools-dev blt 92s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 92s cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 92s docutils-common dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono 92s fonts-font-awesome fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ 92s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 92s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian libaec0 92s libarchive-zip-perl libasan8 libblas3 libcairo2 libcc1-0 libdebhelper-perl 92s libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 92s libfontenc1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 92s libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libimagequant0 libisl23 92s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 92s libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 92s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 libmpc3 libnetcdf19t64 92s libopenjp2-7 libpixman-1-0 libpython3-all-dev libpython3-dev 92s libpython3.12-dev libpython3.13 libpython3.13-dev libpython3.13-minimal 92s libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 92s libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 92s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 92s libxft2 libxrender1 libxslt1.1 libxss1 m4 po-debconf 92s pybuild-plugin-pyproject python-matplotlib-data python-mdanalysis-doc 92s python3-alabaster python3-all python3-all-dev python3-appdirs 92s python3-biopython python3-brotli python3-build python3-cairo python3-cftime 92s python3-citeproc python3-contourpy python3-cycler python3-dateutil 92s python3-decorator python3-defusedxml python3-dev python3-docutils 92s python3-duecredit python3-fasteners python3-fonttools python3-freetype 92s python3-fs python3-griddataformats python3-gsd python3-h5py 92s python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig 92s python3-installer python3-joblib python3-kiwisolver python3-latexcodec 92s python3-looseversion python3-lxml python3-lz4 python3-matplotlib 92s python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic 92s python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme 92s python3-netcdf4 python3-networkx python3-numpy python3-packaging 92s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 92s python3-pluggy python3-pybtex python3-pybtex-docutils 92s python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo 92s python3-roman python3-scipy python3-seaborn python3-six python3-sklearn 92s python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers 92s python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap 92s python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy 92s python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz 92s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev 92s python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk 92s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 92s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core zlib1g-dev 92s 0 upgraded, 211 newly installed, 0 to remove and 0 not upgraded. 92s Need to get 222 MB/222 MB of archives. 92s After this operation, 929 MB of additional disk space will be used. 92s Get:1 /tmp/autopkgtest.jjS5Hb/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [1016 B] 92s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 92s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 92s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 92s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 92s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 92s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 92s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 92s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 92s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 92s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 92s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 92s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 92s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 92s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 92s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 92s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 92s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 92s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 92s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 92s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 92s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 92s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 92s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 92s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 92s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 92s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 92s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 92s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 92s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 92s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 92s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 92s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 92s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 92s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 92s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 92s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 92s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 92s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 92s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 92s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 92s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 92s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 92s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 92s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 92s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 92s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 92s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 93s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 93s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 93s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 93s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 93s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 cython3 amd64 3.0.11+dfsg-1ubuntu1 [2491 kB] 93s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 93s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 93s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 93s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 93s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 93s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 93s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 93s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 93s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 93s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 93s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 93s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 93s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 93s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 93s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 93s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 93s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 93s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 93s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 93s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 93s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 93s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 93s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 93s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 93s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 93s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.2-2 [140 kB] 93s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 93s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 93s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 93s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 93s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 93s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 93s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 93s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 93s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 93s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 93s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 93s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 93s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 93s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 93s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 93s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 93s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 93s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 93s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 93s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 93s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 93s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 93s Get:102 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 93s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 93s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 93s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 93s Get:106 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 93s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 93s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 93s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 93s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 93s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 93s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 93s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 93s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 93s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 93s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 93s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 93s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 93s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 93s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 93s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 93s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 93s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 93s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 93s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-mdanalysis-doc all 2.7.0-5 [2323 kB] 93s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 93s Get:127 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 93s Get:128 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 93s Get:129 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 93s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 93s Get:131 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 93s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 93s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 93s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 93s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 93s Get:136 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 93s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 93s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 93s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 93s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB] 93s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 93s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 93s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB] 93s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 93s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4 [1714 kB] 93s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 93s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cftime amd64 1.6.4-1 [214 kB] 93s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 93s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-citeproc all 0.6.0-3 [98.4 kB] 93s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 93s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 93s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 93s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 93s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 93s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 93s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 93s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 93s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-looseversion all 1.3.0-3 [8354 B] 93s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-duecredit all 0.10.2-2 [66.0 kB] 93s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-monotonic all 1.6-2 [5732 B] 93s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-fasteners all 0.18-2 [12.5 kB] 93s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 93s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 93s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 93s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 93s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 93s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 93s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 93s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 93s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 93s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 93s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 93s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.3-3 [114 kB] 93s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-griddataformats all 1.0.2-2 [2107 kB] 93s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-gsd amd64 3.3.0-1 [203 kB] 93s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 93s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 93s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 93s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hypothesis all 6.116.0-1 [326 kB] 93s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 93s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 93s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 93s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2 [55.1 kB] 93s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 93s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 93s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mda-xdrlib all 0.2.0-3 [11.4 kB] 93s Get:187 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-msgpack amd64 1.0.3-3build2 [80.1 kB] 93s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mmtf all 1.1.3-1 [16.2 kB] 93s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 93s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.0-1 [91.6 kB] 93s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mdanalysis amd64 2.7.0-5 [1992 kB] 93s Get:192 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 93s Get:193 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 93s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 93s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 93s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 93s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 93s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-msmb-theme all 1.2.0-4 [35.4 kB] 93s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-netcdf4 amd64 1.7.2-1 [645 kB] 93s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 93s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 93s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 94s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 94s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 94s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex-docutils all 1.0.2-1 [7176 B] 94s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 94s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-seaborn all 0.13.2-4 [225 kB] 94s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3920 kB] 94s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 94s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-sitemap all 2.6.0-1 [6674 B] 94s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB] 94s Fetched 222 MB in 2s (129 MB/s) 94s Selecting previously unselected package fonts-lato. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 94s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 94s Unpacking fonts-lato (2.015-1) ... 94s Selecting previously unselected package libpython3.13-minimal:amd64. 94s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_amd64.deb ... 94s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 95s Selecting previously unselected package python3.13-minimal. 95s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_amd64.deb ... 95s Unpacking python3.13-minimal (3.13.0-2) ... 95s Selecting previously unselected package sgml-base. 95s Preparing to unpack .../003-sgml-base_1.31_all.deb ... 95s Unpacking sgml-base (1.31) ... 95s Selecting previously unselected package m4. 95s Preparing to unpack .../004-m4_1.4.19-4build1_amd64.deb ... 95s Unpacking m4 (1.4.19-4build1) ... 95s Selecting previously unselected package autoconf. 95s Preparing to unpack .../005-autoconf_2.72-3_all.deb ... 95s Unpacking autoconf (2.72-3) ... 95s Selecting previously unselected package autotools-dev. 95s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ... 95s Unpacking autotools-dev (20220109.1) ... 95s Selecting previously unselected package automake. 95s Preparing to unpack .../007-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 95s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 95s Selecting previously unselected package autopoint. 95s Preparing to unpack .../008-autopoint_0.22.5-2_all.deb ... 95s Unpacking autopoint (0.22.5-2) ... 95s Selecting previously unselected package libtcl8.6:amd64. 95s Preparing to unpack .../009-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 95s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 95s Selecting previously unselected package fonts-dejavu-mono. 95s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-mono (2.37-8) ... 95s Selecting previously unselected package fonts-dejavu-core. 95s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-core (2.37-8) ... 95s Selecting previously unselected package libfontenc1:amd64. 95s Preparing to unpack .../012-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 95s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 95s Selecting previously unselected package x11-common. 95s Preparing to unpack .../013-x11-common_1%3a7.7+23ubuntu3_all.deb ... 95s Unpacking x11-common (1:7.7+23ubuntu3) ... 95s Selecting previously unselected package xfonts-encodings. 95s Preparing to unpack .../014-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 95s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 95s Selecting previously unselected package xfonts-utils. 95s Preparing to unpack .../015-xfonts-utils_1%3a7.7+7_amd64.deb ... 95s Unpacking xfonts-utils (1:7.7+7) ... 95s Selecting previously unselected package fonts-urw-base35. 95s Preparing to unpack .../016-fonts-urw-base35_20200910-8_all.deb ... 95s Unpacking fonts-urw-base35 (20200910-8) ... 95s Selecting previously unselected package fontconfig-config. 95s Preparing to unpack .../017-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 96s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 96s Selecting previously unselected package libfontconfig1:amd64. 96s Preparing to unpack .../018-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 96s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 96s Selecting previously unselected package libxrender1:amd64. 96s Preparing to unpack .../019-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 96s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 96s Selecting previously unselected package libxft2:amd64. 96s Preparing to unpack .../020-libxft2_2.3.6-1build1_amd64.deb ... 96s Unpacking libxft2:amd64 (2.3.6-1build1) ... 96s Selecting previously unselected package libxss1:amd64. 96s Preparing to unpack .../021-libxss1_1%3a1.2.3-1build3_amd64.deb ... 96s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 96s Selecting previously unselected package libtk8.6:amd64. 96s Preparing to unpack .../022-libtk8.6_8.6.15-1_amd64.deb ... 96s Unpacking libtk8.6:amd64 (8.6.15-1) ... 96s Selecting previously unselected package tk8.6-blt2.5. 96s Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 96s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 96s Selecting previously unselected package blt. 96s Preparing to unpack .../024-blt_2.5.3+dfsg-7build1_amd64.deb ... 96s Unpacking blt (2.5.3+dfsg-7build1) ... 96s Selecting previously unselected package libisl23:amd64. 96s Preparing to unpack .../025-libisl23_0.27-1_amd64.deb ... 96s Unpacking libisl23:amd64 (0.27-1) ... 96s Selecting previously unselected package libmpc3:amd64. 96s Preparing to unpack .../026-libmpc3_1.3.1-1build2_amd64.deb ... 96s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 96s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 96s Preparing to unpack .../027-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package cpp-14. 96s Preparing to unpack .../028-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package cpp-x86-64-linux-gnu. 96s Preparing to unpack .../029-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 96s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 96s Selecting previously unselected package cpp. 96s Preparing to unpack .../030-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 96s Unpacking cpp (4:14.1.0-2ubuntu1) ... 96s Selecting previously unselected package libcc1-0:amd64. 96s Preparing to unpack .../031-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package libgomp1:amd64. 96s Preparing to unpack .../032-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package libitm1:amd64. 96s Preparing to unpack .../033-libitm1_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package libasan8:amd64. 97s Preparing to unpack .../034-libasan8_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package liblsan0:amd64. 97s Preparing to unpack .../035-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libtsan2:amd64. 97s Preparing to unpack .../036-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libubsan1:amd64. 97s Preparing to unpack .../037-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libhwasan0:amd64. 97s Preparing to unpack .../038-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libquadmath0:amd64. 97s Preparing to unpack .../039-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package libgcc-14-dev:amd64. 97s Preparing to unpack .../040-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 97s Preparing to unpack .../041-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package gcc-14. 97s Preparing to unpack .../042-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 97s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 97s Selecting previously unselected package gcc-x86-64-linux-gnu. 97s Preparing to unpack .../043-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 97s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 97s Selecting previously unselected package gcc. 97s Preparing to unpack .../044-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 97s Unpacking gcc (4:14.1.0-2ubuntu1) ... 97s Selecting previously unselected package libstdc++-14-dev:amd64. 98s Preparing to unpack .../045-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package g++-14-x86-64-linux-gnu. 98s Preparing to unpack .../046-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package g++-14. 98s Preparing to unpack .../047-g++-14_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking g++-14 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package g++-x86-64-linux-gnu. 98s Preparing to unpack .../048-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 98s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 98s Selecting previously unselected package g++. 98s Preparing to unpack .../049-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 98s Unpacking g++ (4:14.1.0-2ubuntu1) ... 98s Selecting previously unselected package build-essential. 98s Preparing to unpack .../050-build-essential_12.10ubuntu1_amd64.deb ... 98s Unpacking build-essential (12.10ubuntu1) ... 98s Selecting previously unselected package cython3. 98s Preparing to unpack .../051-cython3_3.0.11+dfsg-1ubuntu1_amd64.deb ... 98s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ... 98s Selecting previously unselected package libdebhelper-perl. 98s Preparing to unpack .../052-libdebhelper-perl_13.20ubuntu1_all.deb ... 98s Unpacking libdebhelper-perl (13.20ubuntu1) ... 98s Selecting previously unselected package libtool. 98s Preparing to unpack .../053-libtool_2.4.7-7build1_all.deb ... 98s Unpacking libtool (2.4.7-7build1) ... 98s Selecting previously unselected package dh-autoreconf. 98s Preparing to unpack .../054-dh-autoreconf_20_all.deb ... 98s Unpacking dh-autoreconf (20) ... 98s Selecting previously unselected package libarchive-zip-perl. 98s Preparing to unpack .../055-libarchive-zip-perl_1.68-1_all.deb ... 98s Unpacking libarchive-zip-perl (1.68-1) ... 98s Selecting previously unselected package libfile-stripnondeterminism-perl. 98s Preparing to unpack .../056-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 98s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 98s Selecting previously unselected package dh-strip-nondeterminism. 98s Preparing to unpack .../057-dh-strip-nondeterminism_1.14.0-1_all.deb ... 98s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 98s Selecting previously unselected package debugedit. 98s Preparing to unpack .../058-debugedit_1%3a5.1-1_amd64.deb ... 98s Unpacking debugedit (1:5.1-1) ... 98s Selecting previously unselected package dwz. 98s Preparing to unpack .../059-dwz_0.15-1build6_amd64.deb ... 98s Unpacking dwz (0.15-1build6) ... 98s Selecting previously unselected package gettext. 98s Preparing to unpack .../060-gettext_0.22.5-2_amd64.deb ... 98s Unpacking gettext (0.22.5-2) ... 99s Selecting previously unselected package intltool-debian. 99s Preparing to unpack .../061-intltool-debian_0.35.0+20060710.6_all.deb ... 99s Unpacking intltool-debian (0.35.0+20060710.6) ... 99s Selecting previously unselected package po-debconf. 99s Preparing to unpack .../062-po-debconf_1.0.21+nmu1_all.deb ... 99s Unpacking po-debconf (1.0.21+nmu1) ... 99s Selecting previously unselected package debhelper. 99s Preparing to unpack .../063-debhelper_13.20ubuntu1_all.deb ... 99s Unpacking debhelper (13.20ubuntu1) ... 99s Selecting previously unselected package dh-python. 99s Preparing to unpack .../064-dh-python_6.20241024_all.deb ... 99s Unpacking dh-python (6.20241024) ... 99s Selecting previously unselected package xml-core. 99s Preparing to unpack .../065-xml-core_0.19_all.deb ... 99s Unpacking xml-core (0.19) ... 99s Selecting previously unselected package docutils-common. 99s Preparing to unpack .../066-docutils-common_0.21.2+dfsg-2_all.deb ... 99s Unpacking docutils-common (0.21.2+dfsg-2) ... 99s Selecting previously unselected package fonts-font-awesome. 99s Preparing to unpack .../067-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 99s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 99s Selecting previously unselected package fonts-lyx. 99s Preparing to unpack .../068-fonts-lyx_2.4.2.1-1_all.deb ... 99s Unpacking fonts-lyx (2.4.2.1-1) ... 99s Selecting previously unselected package fonts-mathjax. 99s Preparing to unpack .../069-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 99s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 99s Selecting previously unselected package libaec0:amd64. 99s Preparing to unpack .../070-libaec0_1.1.3-1_amd64.deb ... 99s Unpacking libaec0:amd64 (1.1.3-1) ... 99s Selecting previously unselected package libblas3:amd64. 99s Preparing to unpack .../071-libblas3_3.12.0-3build2_amd64.deb ... 99s Unpacking libblas3:amd64 (3.12.0-3build2) ... 99s Selecting previously unselected package libpixman-1-0:amd64. 99s Preparing to unpack .../072-libpixman-1-0_0.44.0-3_amd64.deb ... 99s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 99s Selecting previously unselected package libxcb-render0:amd64. 99s Preparing to unpack .../073-libxcb-render0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxcb-shm0:amd64. 99s Preparing to unpack .../074-libxcb-shm0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libcairo2:amd64. 99s Preparing to unpack .../075-libcairo2_1.18.2-2_amd64.deb ... 99s Unpacking libcairo2:amd64 (1.18.2-2) ... 99s Selecting previously unselected package libdeflate0:amd64. 99s Preparing to unpack .../076-libdeflate0_1.22-1_amd64.deb ... 99s Unpacking libdeflate0:amd64 (1.22-1) ... 99s Selecting previously unselected package libexpat1-dev:amd64. 99s Preparing to unpack .../077-libexpat1-dev_2.6.2-2_amd64.deb ... 99s Unpacking libexpat1-dev:amd64 (2.6.2-2) ... 99s Selecting previously unselected package libgfortran5:amd64. 99s Preparing to unpack .../078-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libgraphite2-3:amd64. 99s Preparing to unpack .../079-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 99s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 99s Selecting previously unselected package libharfbuzz0b:amd64. 99s Preparing to unpack .../080-libharfbuzz0b_10.0.1-1_amd64.deb ... 99s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 99s Selecting previously unselected package libsz2:amd64. 100s Preparing to unpack .../081-libsz2_1.1.3-1_amd64.deb ... 100s Unpacking libsz2:amd64 (1.1.3-1) ... 100s Selecting previously unselected package libhdf5-103-1t64:amd64. 100s Preparing to unpack .../082-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-hl-100t64:amd64. 100s Preparing to unpack .../083-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libimagequant0:amd64. 100s Preparing to unpack .../084-libimagequant0_2.18.0-1build1_amd64.deb ... 100s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 100s Selecting previously unselected package libjpeg-turbo8:amd64. 100s Preparing to unpack .../085-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 100s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 100s Selecting previously unselected package libjpeg8:amd64. 100s Preparing to unpack .../086-libjpeg8_8c-2ubuntu11_amd64.deb ... 100s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 100s Selecting previously unselected package libjs-jquery. 100s Preparing to unpack .../087-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 100s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 100s Selecting previously unselected package libjs-jquery-ui. 100s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 100s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 100s Selecting previously unselected package libjs-underscore. 100s Preparing to unpack .../089-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 100s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 100s Selecting previously unselected package libjs-sphinxdoc. 100s Preparing to unpack .../090-libjs-sphinxdoc_7.4.7-4_all.deb ... 100s Unpacking libjs-sphinxdoc (7.4.7-4) ... 100s Selecting previously unselected package libjson-perl. 100s Preparing to unpack .../091-libjson-perl_4.10000-1_all.deb ... 100s Unpacking libjson-perl (4.10000-1) ... 100s Selecting previously unselected package liblapack3:amd64. 100s Preparing to unpack .../092-liblapack3_3.12.0-3build2_amd64.deb ... 100s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 100s Selecting previously unselected package liblbfgsb0:amd64. 100s Preparing to unpack .../093-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 100s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 100s Selecting previously unselected package liblcms2-2:amd64. 100s Preparing to unpack .../094-liblcms2-2_2.16-2_amd64.deb ... 100s Unpacking liblcms2-2:amd64 (2.16-2) ... 100s Selecting previously unselected package liblerc4:amd64. 100s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 100s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 100s Selecting previously unselected package liblzf1:amd64. 100s Preparing to unpack .../096-liblzf1_3.6-4_amd64.deb ... 100s Unpacking liblzf1:amd64 (3.6-4) ... 100s Selecting previously unselected package libnetcdf19t64:amd64. 100s Preparing to unpack .../097-libnetcdf19t64_1%3a4.9.2-6ubuntu1_amd64.deb ... 100s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 100s Selecting previously unselected package zlib1g-dev:amd64. 100s Preparing to unpack .../098-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 100s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 100s Selecting previously unselected package libpython3.12-dev:amd64. 100s Preparing to unpack .../099-libpython3.12-dev_3.12.7-3_amd64.deb ... 100s Unpacking libpython3.12-dev:amd64 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pybuild-plugin-pyproject (6.20241024) ... 101s Selecting previously unselected package python-matplotlib-data. 101s Preparing to unpack .../121-python-matplotlib-data_3.8.3-3_all.deb ... 101s Unpacking python-matplotlib-data (3.8.3-3) ... 101s Selecting previously unselected package libjs-mathjax. 102s Preparing to unpack .../122-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 102s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 102s Selecting previously unselected package python-mdanalysis-doc. 102s Preparing to unpack .../123-python-mdanalysis-doc_2.7.0-5_all.deb ... 102s Unpacking python-mdanalysis-doc (2.7.0-5) ... 102s Selecting previously unselected package python3.13. 102s Preparing to unpack .../124-python3.13_3.13.0-2_amd64.deb ... 102s Unpacking python3.13 (3.13.0-2) ... 102s Selecting previously unselected package python3-all. 102s Preparing to unpack .../125-python3-all_3.12.7-1_amd64.deb ... 102s Unpacking python3-all (3.12.7-1) ... 102s Selecting previously unselected package 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python3-numpy (1:1.26.4+ds-11build1) ... 103s Selecting previously unselected package python3.12-tk. 103s Preparing to unpack .../132-python3.12-tk_3.12.7-3_amd64.deb ... 103s Unpacking python3.12-tk (3.12.7-3) ... 103s Selecting previously unselected package python3.13-tk. 103s Preparing to unpack .../133-python3.13-tk_3.13.0-2_amd64.deb ... 103s Unpacking python3.13-tk (3.13.0-2) ... 103s Selecting previously unselected package python3-tk:amd64. 103s Preparing to unpack .../134-python3-tk_3.12.7-1_amd64.deb ... 103s Unpacking python3-tk:amd64 (3.12.7-1) ... 103s Selecting previously unselected package python3-pil.imagetk:amd64. 103s Preparing to unpack .../135-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 103s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 103s Selecting previously unselected package libopenjp2-7:amd64. 103s Preparing to unpack .../136-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 103s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 103s Selecting previously unselected package python3-pil:amd64. 103s Preparing to unpack .../137-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 103s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 103s Selecting previously unselected package python3-cairo. 103s Preparing to unpack .../138-python3-cairo_1.26.1-2_amd64.deb ... 103s Unpacking python3-cairo (1.26.1-2) ... 103s Selecting previously unselected package python3-freetype. 103s Preparing to unpack .../139-python3-freetype_2.5.1-1_all.deb ... 103s Unpacking python3-freetype (2.5.1-1) ... 103s Selecting previously unselected package python3-rlpycairo. 103s Preparing to unpack .../140-python3-rlpycairo_0.3.0-3_all.deb ... 103s Unpacking python3-rlpycairo (0.3.0-3) ... 103s Selecting previously unselected package python3-reportlab. 103s Preparing to unpack .../141-python3-reportlab_4.2.5-1_all.deb ... 103s Unpacking python3-reportlab (4.2.5-1) ... 103s Selecting previously unselected package w3c-sgml-lib. 103s Preparing to unpack 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python3-msgpack (1.0.3-3build2) ... 106s Selecting previously unselected package python3-mmtf. 106s Preparing to unpack .../186-python3-mmtf_1.1.3-1_all.deb ... 106s Unpacking python3-mmtf (1.1.3-1) ... 106s Selecting previously unselected package python3-threadpoolctl. 106s Preparing to unpack .../187-python3-threadpoolctl_3.1.0-1_all.deb ... 106s Unpacking python3-threadpoolctl (3.1.0-1) ... 106s Selecting previously unselected package python3-tqdm. 106s Preparing to unpack .../188-python3-tqdm_4.67.0-1_all.deb ... 106s Unpacking python3-tqdm (4.67.0-1) ... 106s Selecting previously unselected package python3-mdanalysis. 106s Preparing to unpack .../189-python3-mdanalysis_2.7.0-5_amd64.deb ... 106s Unpacking python3-mdanalysis (2.7.0-5) ... 106s Selecting previously unselected package sphinx-common. 106s Preparing to unpack .../190-sphinx-common_7.4.7-4_all.deb ... 106s Unpacking sphinx-common (7.4.7-4) ... 106s Selecting previously unselected package python3-alabaster. 106s 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200s Setting up python3-pybtex-docutils (1.0.2-1) ... 200s Setting up python3-sphinx (7.4.7-4) ... 201s Setting up python3-sphinxcontrib.bibtex (2.6.2-1) ... 201s Setting up python3-sphinx-sitemap (2.6.0-1) ... 202s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 202s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 202s Setting up python3-msmb-theme (1.2.0-4) ... 202s Setting up autopkgtest-satdep (0) ... 208s (Reading database ... 102420 files and directories currently installed.) 208s Removing autopkgtest-satdep (0) ... 208s autopkgtest [08:56:53]: test test-mdanalysis: [----------------------- 208s skipping tests with SKIP_TEST_LIST= 212s ============================= test session starts ============================== 212s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 212s rootdir: /tmp/autopkgtest.jjS5Hb/build.1lL/src 212s plugins: hypothesis-6.116.0, typeguard-4.4.1 212s collected 0 items / 163 errors 212s 212s ==================================== ERRORS ==================================== 212s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_align.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_align.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_atomicdistances.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_base.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_base.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_bat.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_bat.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_contacts.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_contacts.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_data.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_data.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_density.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_density.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dielectric.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_dielectric.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_diffusionmap.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dihedrals.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_distances.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_distances.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_encore.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_encore.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_gnm.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_gnm.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_helix_analysis.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_helix_analysis.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hole2.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_hole2.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_leaflet.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_leaflet.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_lineardensity.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_lineardensity.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_msd.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_msd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nucleicacids.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nuclinfo.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_pca.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_pca.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_persistencelength.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_persistencelength.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_psa.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_psa.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_rdf.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf_s.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_rdf_s.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rms.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_rms.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_waterdynamics.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_wbridge.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/analysis/test_wbridge.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_core.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/auxiliary/test_core.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_edr.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/auxiliary/test_edr.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_xvg.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/auxiliary/test_xvg.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/converters/test_base.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/converters/test_base.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/converters/test_openmm.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm_parser.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/converters/test_openmm_parser.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/converters/test_parmed.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed_parser.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/converters/test_parmed_parser.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/converters/test_rdkit.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit_parser.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/converters/test_rdkit_parser.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chainreader.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_chainreader.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ___ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chemfiles.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_copying.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_copying.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_crd.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_crd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dcd.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_dcd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dlpoly.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dms.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_dms.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_fhiaims.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gms.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_gms.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gro.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_gro.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gsd.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_gsd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_h5md.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_h5md.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_lammps.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_lammps.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_memory.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_memory.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mmtf.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_mmtf.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mol2.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_mol2.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_namdbin.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_namdbin.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_netcdf.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_null.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_null.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdb.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_pdb.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdbqt.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pqr.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_pqr.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_reader_api.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_reader_api.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_timestep_api.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_timestep_api.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_tng.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_tng.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trc.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_trc.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trj.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_trj.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trz.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_trz.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_txyz.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_txyz.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_windows.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_windows.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_api.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_writer_api.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_registration.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xdr.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_xdr.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xyz.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/coordinates/test_xyz.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accessors.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_accessors.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accumulate.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_accumulate.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_atom.py _________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_atom.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_atomgroup.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_atomgroup.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_atomselections.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_atomselections.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_copying.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_copying.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_fragments.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_fragments.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/core/test_group_traj_access.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_group_traj_access.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_groups.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_groups.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_index_dtype.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_index_dtype.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_requires.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_requires.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_residue.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_residue.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_residuegroup.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_residuegroup.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_segment.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_segment.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_segmentgroup.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_segmentgroup.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_topology.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_topology.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyattrs.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_topologyattrs.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ___ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyobjects.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_topologyobjects.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_universe.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_universe.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_unwrap.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_unwrap.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/core/test_updating_atomgroup.py __ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_wrap.py _________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/core/test_wrap.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/formats/test_libdcd.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/formats/test_libdcd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/formats/test_libmdaxdr.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/formats/test_libmdaxdr.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/import/test_import.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/import/test_import.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_augment.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_augment.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_cutil.py _________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_cutil.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/lib/test_distances.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_distances.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __________ ERROR collecting testsuite/MDAnalysisTests/lib/test_log.py __________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_log.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/lib/test_neighborsearch.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_neighborsearch.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_nsgrid.py _________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_nsgrid.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_pkdtree.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_pkdtree.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_qcprot.py _________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_qcprot.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_util.py __________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/lib/test_util.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:25: in 212s import numpy as np 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py:25: in 212s from numpy.testing import assert_almost_equal 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____________ ERROR collecting testsuite/MDAnalysisTests/test_api.py ____________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/test_api.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_altloc.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_altloc.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_crd.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_crd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dlpoly.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_dlpoly.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dms.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_dms.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_fhiaims.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_fhiaims.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gms.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_gms.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gro.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_gro.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gsd.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_gsd.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_guessers.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_guessers.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_hoomdxml.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_hoomdxml.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_itp.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_itp.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_lammpsdata.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_lammpsdata.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_minimal.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_minimal.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mmtf.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_mmtf.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mol2.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_mol2.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdb.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_pdb.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdbqt.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_pdbqt.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pqr.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_pqr.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_psf.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_psf.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_top.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_top.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_base.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_topology_base.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_str_types.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_topology_str_types.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_tprparser.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_tprparser.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_txyz.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_txyz.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xpdb.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_xpdb.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xyz.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/topology/test_xyz.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_base.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_base.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_boxdimensions.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ____ ERROR collecting testsuite/MDAnalysisTests/transformations/test_fit.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_fit.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_nojump.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_nojump.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_positionaveraging.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_rotate.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_rotate.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_translate.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_translate.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_wrap.py ____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/transformations/test_wrap.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_authors.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_authors.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_datafiles.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_datafiles.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_duecredit.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_duecredit.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_failure.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_failure.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_imports.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_imports.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _________ ERROR collecting testsuite/MDAnalysisTests/utils/test_log.py _________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_log.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_meta.py _________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_meta.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_modelling.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_modelling.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_persistence.py _____ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_persistence.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_pickleio.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_pickleio.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_qcprot.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_qcprot.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_selections.py ______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_selections.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_streamio.py _______ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_streamio.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ___ ERROR collecting testsuite/MDAnalysisTests/utils/test_transformations.py ___ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_transformations.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_units.py ________ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/utils/test_units.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s _ ERROR collecting testsuite/MDAnalysisTests/visualization/test_streamlines.py _ 212s ImportError while importing test module '/tmp/autopkgtest.jjS5Hb/build.1lL/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py'. 212s Hint: make sure your test modules/packages have valid Python names. 212s Traceback: 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 212s from . import multiarray 212s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 212s from . import overrides 212s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 212s from numpy.core._multiarray_umath import ( 212s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 212s 212s During handling of the above exception, another exception occurred: 212s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 212s from numpy.__config__ import show as show_config 212s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 212s from numpy.core._multiarray_umath import ( 212s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 212s raise ImportError(msg) 212s E ImportError: 212s E 212s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 212s E 212s E Importing the numpy C-extensions failed. This error can happen for 212s E many reasons, often due to issues with your setup or how NumPy was 212s E installed. 212s E 212s E We have compiled some common reasons and troubleshooting tips at: 212s E 212s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 212s E 212s E Please note and check the following: 212s E 212s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 212s E * The NumPy version is: "1.26.4" 212s E 212s E and make sure that they are the versions you expect. 212s E Please carefully study the documentation linked above for further help. 212s E 212s E Original error was: No module named 'numpy.core._multiarray_umath' 212s 212s The above exception was the direct cause of the following exception: 212s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 212s return _bootstrap._gcd_import(name[level:], package, level) 212s testsuite/MDAnalysisTests/__init__.py:125: in 212s from MDAnalysisTests.util import ( 212s testsuite/MDAnalysisTests/util.py:41: in 212s from numpy.testing import assert_warns 212s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 212s raise ImportError(msg) from e 212s E ImportError: Error importing numpy: you should not try to import numpy from 212s E its source directory; please exit the numpy source tree, and relaunch 212s E your python interpreter from there. 212s =========================== short test summary info ============================ 212s ERROR testsuite/MDAnalysisTests/analysis/test_align.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_atomicdistances.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_base.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_contacts.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_data.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_density.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_dielectric.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_diffusionmap.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_dihedrals.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_distances.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_encore.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_gnm.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_helix_analysis.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_hole2.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_leaflet.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_lineardensity.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_msd.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_nucleicacids.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_nuclinfo.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_pca.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_persistencelength.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_psa.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_rdf.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_rdf_s.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_rms.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_waterdynamics.py 212s ERROR testsuite/MDAnalysisTests/analysis/test_wbridge.py 212s ERROR testsuite/MDAnalysisTests/auxiliary/test_core.py 212s ERROR testsuite/MDAnalysisTests/auxiliary/test_edr.py 212s ERROR testsuite/MDAnalysisTests/auxiliary/test_xvg.py 212s ERROR testsuite/MDAnalysisTests/converters/test_base.py 212s ERROR testsuite/MDAnalysisTests/converters/test_openmm.py 212s ERROR testsuite/MDAnalysisTests/converters/test_openmm_parser.py 212s ERROR testsuite/MDAnalysisTests/converters/test_parmed.py 212s ERROR testsuite/MDAnalysisTests/converters/test_parmed_parser.py 212s ERROR testsuite/MDAnalysisTests/converters/test_rdkit.py 212s ERROR testsuite/MDAnalysisTests/converters/test_rdkit_parser.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_chainreader.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_chemfiles.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_copying.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_crd.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_dcd.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_dlpoly.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_dms.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_fhiaims.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_gms.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_gro.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_gsd.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_h5md.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_lammps.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_memory.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_mmtf.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_mol2.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_namdbin.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_netcdf.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_null.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_pdb.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_pdbqt.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_pqr.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_reader_api.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_timestep_api.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_tng.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_trc.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_trj.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_trz.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_txyz.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_windows.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_api.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_registration.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_xdr.py 212s ERROR testsuite/MDAnalysisTests/coordinates/test_xyz.py 212s ERROR testsuite/MDAnalysisTests/core/test_accessors.py 212s ERROR testsuite/MDAnalysisTests/core/test_accumulate.py 212s ERROR testsuite/MDAnalysisTests/core/test_atom.py 212s ERROR testsuite/MDAnalysisTests/core/test_atomgroup.py 212s ERROR testsuite/MDAnalysisTests/core/test_atomselections.py 212s ERROR testsuite/MDAnalysisTests/core/test_copying.py 212s ERROR testsuite/MDAnalysisTests/core/test_fragments.py 212s ERROR testsuite/MDAnalysisTests/core/test_group_traj_access.py 212s ERROR testsuite/MDAnalysisTests/core/test_groups.py 212s ERROR testsuite/MDAnalysisTests/core/test_index_dtype.py 212s ERROR testsuite/MDAnalysisTests/core/test_requires.py 212s ERROR testsuite/MDAnalysisTests/core/test_residue.py 212s ERROR testsuite/MDAnalysisTests/core/test_residuegroup.py 212s ERROR testsuite/MDAnalysisTests/core/test_segment.py 212s ERROR testsuite/MDAnalysisTests/core/test_segmentgroup.py 212s ERROR testsuite/MDAnalysisTests/core/test_topology.py 212s ERROR testsuite/MDAnalysisTests/core/test_topologyattrs.py 212s ERROR testsuite/MDAnalysisTests/core/test_topologyobjects.py 212s ERROR testsuite/MDAnalysisTests/core/test_universe.py 212s ERROR testsuite/MDAnalysisTests/core/test_unwrap.py 212s ERROR testsuite/MDAnalysisTests/core/test_updating_atomgroup.py 212s ERROR testsuite/MDAnalysisTests/core/test_wrap.py 212s ERROR testsuite/MDAnalysisTests/formats/test_libdcd.py 212s ERROR testsuite/MDAnalysisTests/formats/test_libmdaxdr.py 212s ERROR testsuite/MDAnalysisTests/import/test_import.py 212s ERROR testsuite/MDAnalysisTests/lib/test_augment.py 212s ERROR testsuite/MDAnalysisTests/lib/test_cutil.py 212s ERROR testsuite/MDAnalysisTests/lib/test_distances.py 212s ERROR testsuite/MDAnalysisTests/lib/test_log.py 212s ERROR testsuite/MDAnalysisTests/lib/test_neighborsearch.py 212s ERROR testsuite/MDAnalysisTests/lib/test_nsgrid.py 212s ERROR testsuite/MDAnalysisTests/lib/test_pkdtree.py 212s ERROR testsuite/MDAnalysisTests/lib/test_qcprot.py 212s ERROR testsuite/MDAnalysisTests/lib/test_util.py 212s ERROR testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py 212s ERROR testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py 212s ERROR testsuite/MDAnalysisTests/test_api.py 212s ERROR testsuite/MDAnalysisTests/topology/test_altloc.py 212s ERROR testsuite/MDAnalysisTests/topology/test_crd.py 212s ERROR testsuite/MDAnalysisTests/topology/test_dlpoly.py 212s ERROR testsuite/MDAnalysisTests/topology/test_dms.py 212s ERROR testsuite/MDAnalysisTests/topology/test_fhiaims.py 212s ERROR testsuite/MDAnalysisTests/topology/test_gms.py 212s ERROR testsuite/MDAnalysisTests/topology/test_gro.py 212s ERROR testsuite/MDAnalysisTests/topology/test_gsd.py 212s ERROR testsuite/MDAnalysisTests/topology/test_guessers.py 212s ERROR testsuite/MDAnalysisTests/topology/test_hoomdxml.py 212s ERROR testsuite/MDAnalysisTests/topology/test_itp.py 212s ERROR testsuite/MDAnalysisTests/topology/test_lammpsdata.py 212s ERROR testsuite/MDAnalysisTests/topology/test_minimal.py 212s ERROR testsuite/MDAnalysisTests/topology/test_mmtf.py 212s ERROR testsuite/MDAnalysisTests/topology/test_mol2.py 212s ERROR testsuite/MDAnalysisTests/topology/test_pdb.py 212s ERROR testsuite/MDAnalysisTests/topology/test_pdbqt.py 212s ERROR testsuite/MDAnalysisTests/topology/test_pqr.py 212s ERROR testsuite/MDAnalysisTests/topology/test_psf.py 212s ERROR testsuite/MDAnalysisTests/topology/test_top.py 212s ERROR testsuite/MDAnalysisTests/topology/test_topology_base.py 212s ERROR testsuite/MDAnalysisTests/topology/test_topology_str_types.py 212s ERROR testsuite/MDAnalysisTests/topology/test_tprparser.py 212s ERROR testsuite/MDAnalysisTests/topology/test_txyz.py 212s ERROR testsuite/MDAnalysisTests/topology/test_xpdb.py 212s ERROR testsuite/MDAnalysisTests/topology/test_xyz.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_base.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_boxdimensions.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_fit.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_nojump.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_positionaveraging.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_rotate.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_translate.py 212s ERROR testsuite/MDAnalysisTests/transformations/test_wrap.py 212s ERROR testsuite/MDAnalysisTests/utils/test_authors.py 212s ERROR testsuite/MDAnalysisTests/utils/test_datafiles.py 212s ERROR testsuite/MDAnalysisTests/utils/test_duecredit.py 212s ERROR testsuite/MDAnalysisTests/utils/test_failure.py 212s ERROR testsuite/MDAnalysisTests/utils/test_imports.py 212s ERROR testsuite/MDAnalysisTests/utils/test_log.py 212s ERROR testsuite/MDAnalysisTests/utils/test_meta.py 212s ERROR testsuite/MDAnalysisTests/utils/test_modelling.py 212s ERROR testsuite/MDAnalysisTests/utils/test_persistence.py 212s ERROR testsuite/MDAnalysisTests/utils/test_pickleio.py 212s ERROR testsuite/MDAnalysisTests/utils/test_qcprot.py 212s ERROR testsuite/MDAnalysisTests/utils/test_selections.py 212s ERROR testsuite/MDAnalysisTests/utils/test_streamio.py 212s ERROR testsuite/MDAnalysisTests/utils/test_transformations.py 212s ERROR testsuite/MDAnalysisTests/utils/test_units.py 212s ERROR testsuite/MDAnalysisTests/visualization/test_streamlines.py 212s !!!!!!!!!!!!!!!!!! Interrupted: 163 errors during collection !!!!!!!!!!!!!!!!!!! 212s ============================= 163 errors in 3.95s ============================== 213s autopkgtest [08:56:58]: test test-mdanalysis: -----------------------] 213s test-mdanalysis FAIL non-zero exit status 2 213s autopkgtest [08:56:58]: test test-mdanalysis: - - - - - - - - - - results - - - - - - - - - - 213s autopkgtest [08:56:58]: @@@@@@@@@@@@@@@@@@@@ summary 213s test-mdanalysis FAIL non-zero exit status 2 221s nova [W] Skipping flock for amd64 221s Creating nova instance adt-plucky-amd64-mdanalysis-20241113-085325-juju-7f2275-prod-proposed-migration-environment-15-229a4526-5d6c-42d0-b549-bece3492d4d2 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...