0s autopkgtest [01:33:54]: starting date and time: 2025-03-16 01:33:54+0000
  0s autopkgtest [01:33:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [01:33:54]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eu81rurj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-8.secgroup --name adt-plucky-amd64-mcaller-20250316-013353-juju-7f2275-prod-proposed-migration-environment-15-44f90168-2c59-425a-89cc-1f895beead6e --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 48s autopkgtest [01:34:42]: testbed dpkg architecture: amd64
 48s autopkgtest [01:34:42]: testbed apt version: 2.9.31ubuntu1
 48s autopkgtest [01:34:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 49s autopkgtest [01:34:43]: testbed release detected to be: None
 49s autopkgtest [01:34:43]: updating testbed package index (apt update)
 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 49s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 49s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 49s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 49s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB]
 49s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB]
 49s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB]
 49s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [66.6 kB]
 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [84.0 kB]
 49s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 c-n-f Metadata [1844 B]
 49s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 c-n-f Metadata [116 B]
 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [168 kB]
 49s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [338 kB]
 49s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 c-n-f Metadata [14.9 kB]
 49s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [18.0 kB]
 49s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [9324 B]
 49s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 c-n-f Metadata [628 B]
 50s Fetched 1252 kB in 0s (4348 kB/s)
 50s Reading package lists...
 51s + lsb_release --codename --short
 51s + RELEASE=plucky
 51s + cat
 51s + [ plucky != trusty ]
 51s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
 51s Reading package lists...
 51s Building dependency tree...
 51s Reading state information...
 51s Calculating upgrade...
 51s Calculating upgrade...
 52s The following package was automatically installed and is no longer required:
 52s   libnl-genl-3-200
 52s Use 'sudo apt autoremove' to remove it.
 52s The following NEW packages will be installed:
 52s   bpftool libdebuginfod-common libdebuginfod1t64 linux-headers-6.14.0-10
 52s   linux-headers-6.14.0-10-generic linux-image-6.14.0-10-generic
 52s   linux-modules-6.14.0-10-generic linux-modules-extra-6.14.0-10-generic
 52s   linux-perf linux-tools-6.14.0-10 linux-tools-6.14.0-10-generic pnp.ids
 52s The following packages will be upgraded:
 52s   apparmor apt apt-utils binutils binutils-common binutils-x86-64-linux-gnu
 52s   cloud-init cloud-init-base curl dosfstools fwupd gir1.2-girepository-2.0
 52s   gir1.2-glib-2.0 htop hwdata libapparmor1 libapt-pkg7.0 libaudit-common
 52s   libaudit1 libbinutils libbrotli1 libcap-ng0 libctf-nobfd0 libctf0
 52s   libcurl3t64-gnutls libcurl4t64 libestr0 libfwupd3 libgirepository-1.0-1
 52s   libglib2.0-0t64 libglib2.0-data libgprofng0 libjemalloc2 liblz4-1 liblzma5
 52s   libmm-glib0 libncurses6 libncursesw6 libnl-3-200 libnl-genl-3-200
 52s   libnl-route-3-200 libpci3 libpython3-stdlib libpython3.13
 52s   libpython3.13-minimal libpython3.13-stdlib libselinux1 libsframe1
 52s   libsqlite3-0 libtinfo6 libxml2 linux-firmware linux-generic
 52s   linux-headers-generic linux-headers-virtual linux-image-generic
 52s   linux-image-virtual linux-libc-dev linux-tools-common linux-virtual
 52s   media-types ncurses-base ncurses-bin ncurses-term pci.ids pciutils
 52s   pinentry-curses python-apt-common python3 python3-apt python3-cffi-backend
 52s   python3-dbus python3-gi python3-jinja2 python3-lazr.uri python3-markupsafe
 52s   python3-minimal python3-systemd python3-yaml python3.13 python3.13-gdbm
 52s   python3.13-minimal rsync rsyslog strace xz-utils
 52s 86 upgraded, 12 newly installed, 0 to remove and 0 not upgraded.
 52s Need to get 807 MB of archives.
 52s After this operation, 326 MB of additional disk space will be used.
 52s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-bin amd64 6.5+20250216-2 [194 kB]
 52s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-base all 6.5+20250216-2 [25.9 kB]
 52s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 ncurses-term all 6.5+20250216-2 [276 kB]
 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblz4-1 amd64 1.10.0-4 [66.4 kB]
 52s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.4-1 [157 kB]
 52s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.33 [1138 kB]
 52s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.33 [1439 kB]
 52s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.33 [222 kB]
 52s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-minimal amd64 3.13.2-2 [27.7 kB]
 52s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3 amd64 3.13.2-2 [24.0 kB]
 52s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.2-2 [2341 kB]
 52s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 media-types all 13.0.0 [29.9 kB]
 52s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses6 amd64 6.5+20250216-2 [126 kB]
 52s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libncursesw6 amd64 6.5+20250216-2 [165 kB]
 52s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtinfo6 amd64 6.5+20250216-2 [119 kB]
 52s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libsqlite3-0 amd64 3.46.1-2 [715 kB]
 52s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.2-2 [735 kB]
 52s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.2-2 [2365 kB]
 52s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.2-2 [883 kB]
 52s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.2-2 [2066 kB]
 52s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.4 kB]
 52s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 rsync amd64 3.4.1+ds1-3 [482 kB]
 52s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
 52s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu2 [6628 B]
 52s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-4build1 [15.6 kB]
 52s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu2 [54.0 kB]
 52s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu3 [87.3 kB]
 52s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.83.4-1 [25.3 kB]
 52s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.84.0-1 [184 kB]
 52s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.84.0-1 [1669 kB]
 52s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.83.4-1 [89.5 kB]
 52s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libapparmor1 amd64 4.1.0~beta5-0ubuntu8 [55.0 kB]
 52s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libestr0 amd64 0.1.11-2 [8340 B]
 52s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.84.0-1 [53.0 kB]
 52s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2ubuntu5 [772 kB]
 52s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.9build1 [21.3 kB]
 52s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.9build1 [172 kB]
 52s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build2 [96.6 kB]
 52s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dbus amd64 1.3.2-5build5 [102 kB]
 52s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gi amd64 3.50.0-4build1 [252 kB]
 52s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-yaml amd64 6.0.2-1build2 [144 kB]
 52s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu2 [555 kB]
 52s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 apparmor amd64 4.1.0~beta5-0ubuntu8 [701 kB]
 52s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 dosfstools amd64 4.2-1.2 [95.0 kB]
 52s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-genl-3-200 amd64 3.7.0-1 [12.2 kB]
 52s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-200 amd64 3.7.0-1 [191 kB]
 52s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-200 amd64 3.7.0-1 [64.9 kB]
 52s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 pci.ids all 0.0~2025.03.09-1 [285 kB]
 52s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 pciutils amd64 1:3.13.0-2 [110 kB]
 52s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libpci3 amd64 1:3.13.0-2 [39.8 kB]
 52s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 strace amd64 6.13+ds-1ubuntu1 [622 kB]
 52s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.4-1 [278 kB]
 52s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libgprofng0 amd64 2.44-3ubuntu1 [886 kB]
 52s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf0 amd64 2.44-3ubuntu1 [96.5 kB]
 52s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libctf-nobfd0 amd64 2.44-3ubuntu1 [98.9 kB]
 52s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-x86-64-linux-gnu amd64 2.44-3ubuntu1 [1108 kB]
 53s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libbinutils amd64 2.44-3ubuntu1 [585 kB]
 53s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils amd64 2.44-3ubuntu1 [208 kB]
 53s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 binutils-common amd64 2.44-3ubuntu1 [215 kB]
 53s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libsframe1 amd64 2.44-3ubuntu1 [14.8 kB]
 53s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 hwdata all 0.393-3 [1562 B]
 53s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 pnp.ids all 0.393-3 [29.5 kB]
 53s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-common all 6.14.0-10.10 [295 kB]
 53s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftool amd64 7.6.0+6.14.0-10.10 [1147 kB]
 53s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-markupsafe amd64 2.1.5-1build4 [13.4 kB]
 53s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 53s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu3 [616 kB]
 53s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli1 amd64 1.1.0-2build4 [365 kB]
 53s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.12.1-3ubuntu1 [258 kB]
 53s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.12.1-3ubuntu1 [437 kB]
 53s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.12.1-3ubuntu1 [432 kB]
 53s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd amd64 2.0.6-4 [5408 kB]
 53s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfwupd3 amd64 2.0.6-4 [136 kB]
 53s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libmm-glib0 amd64 1.23.4-0ubuntu3 [251 kB]
 53s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 htop amd64 3.4.0-2 [195 kB]
 53s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
 53s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjemalloc2 amd64 5.3.0-3 [277 kB]
 53s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-firmware amd64 20250310.git9e1370d3-0ubuntu1 [571 MB]
 63s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-6.14.0-10-generic amd64 6.14.0-10.10 [41.2 MB]
 64s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-6.14.0-10-generic amd64 6.14.0-10.10 [15.3 MB]
 65s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-modules-extra-6.14.0-10-generic amd64 6.14.0-10.10 [120 MB]
 69s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-generic amd64 6.14.0-10.10 [1730 B]
 69s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-generic amd64 6.14.0-10.10 [11.1 kB]
 69s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-virtual amd64 6.14.0-10.10 [1722 B]
 69s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-image-virtual amd64 6.14.0-10.10 [11.1 kB]
 69s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-virtual amd64 6.14.0-10.10 [1642 B]
 69s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10 all 6.14.0-10.10 [14.2 MB]
 69s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-6.14.0-10-generic amd64 6.14.0-10.10 [3915 kB]
 69s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-headers-generic amd64 6.14.0-10.10 [11.0 kB]
 69s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-libc-dev amd64 6.14.0-10.10 [1723 kB]
 69s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-perf amd64 6.14.0-10.10 [4122 kB]
 70s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10 amd64 6.14.0-10.10 [1394 kB]
 70s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-tools-6.14.0-10-generic amd64 6.14.0-10.10 [830 B]
 70s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-2ubuntu3 [42.3 kB]
 70s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lazr.uri all 1.0.6-6 [13.7 kB]
 70s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build6 [43.9 kB]
 70s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.2-2 [31.9 kB]
 70s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu3 [2100 B]
 70s Preconfiguring packages ...
 70s Fetched 807 MB in 18s (44.9 MB/s)
 70s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 70s Preparing to unpack .../ncurses-bin_6.5+20250216-2_amd64.deb ...
 70s Unpacking ncurses-bin (6.5+20250216-2) over (6.5+20250216-1) ...
 71s Setting up ncurses-bin (6.5+20250216-2) ...
 71s (Reading database ... 
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(Reading database ... 109138 files and directories currently installed.)
 71s Preparing to unpack .../ncurses-base_6.5+20250216-2_all.deb ...
 71s Unpacking ncurses-base (6.5+20250216-2) over (6.5+20250216-1) ...
 71s Setting up ncurses-base (6.5+20250216-2) ...
 71s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 71s Preparing to unpack .../ncurses-term_6.5+20250216-2_all.deb ...
 71s Unpacking ncurses-term (6.5+20250216-2) over (6.5+20250216-1) ...
 71s Preparing to unpack .../liblz4-1_1.10.0-4_amd64.deb ...
 71s Unpacking liblz4-1:amd64 (1.10.0-4) over (1.10.0-3) ...
 71s Setting up liblz4-1:amd64 (1.10.0-4) ...
 71s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 71s Preparing to unpack .../liblzma5_5.6.4-1_amd64.deb ...
 71s Unpacking liblzma5:amd64 (5.6.4-1) over (5.6.3-1) ...
 71s Setting up liblzma5:amd64 (5.6.4-1) ...
 72s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 109138 files and directories currently installed.)
 72s Preparing to unpack .../libapt-pkg7.0_2.9.33_amd64.deb ...
 72s Unpacking libapt-pkg7.0:amd64 (2.9.33) over (2.9.31ubuntu1) ...
 72s Setting up libapt-pkg7.0:amd64 (2.9.33) ...
 72s (Reading database ... 
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 88s Installing new version of config file /etc/mime.types ...
 88s Setting up linux-headers-6.14.0-10-generic (6.14.0-10.10) ...
 88s Setting up libapparmor1:amd64 (4.1.0~beta5-0ubuntu8) ...
 88s Setting up pci.ids (0.0~2025.03.09-1) ...
 88s Setting up apt-utils (2.9.33) ...
 88s Setting up libdebuginfod-common (0.192-4) ...
 88s Setting up linux-firmware (20250310.git9e1370d3-0ubuntu1) ...
 89s Setting up bpftool (7.6.0+6.14.0-10.10) ...
 89s Setting up libestr0:amd64 (0.1.11-2) ...
 89s Setting up libbrotli1:amd64 (1.1.0-2build4) ...
 89s Setting up libsqlite3-0:amd64 (3.46.1-2) ...
 89s Setting up dosfstools (4.2-1.2) ...
 89s Setting up rsyslog (8.2412.0-2ubuntu2) ...
 89s info: The user `syslog' is already a member of `adm'.
 90s Setting up binutils-common:amd64 (2.44-3ubuntu1) ...
 90s Setting up libcurl3t64-gnutls:amd64 (8.12.1-3ubuntu1) ...
 90s Setting up linux-libc-dev:amd64 (6.14.0-10.10) ...
 90s Setting up libctf-nobfd0:amd64 (2.44-3ubuntu1) ...
 90s Setting up linux-headers-generic (6.14.0-10.10) ...
 90s Setting up libjemalloc2:amd64 (5.3.0-3) ...
 90s Setting up libsframe1:amd64 (2.44-3ubuntu1) ...
 90s Setting up libpython3.13-minimal:amd64 (3.13.2-2) ...
 90s Setting up apparmor (4.1.0~beta5-0ubuntu8) ...
 90s Installing new version of config file /etc/apparmor.d/openvpn ...
 91s Reloading AppArmor profiles 
 92s Setting up libglib2.0-0t64:amd64 (2.84.0-1) ...
 92s No schema files found: doing nothing.
 92s Setting up libglib2.0-data (2.84.0-1) ...
 92s Setting up libncurses6:amd64 (6.5+20250216-2) ...
 92s Setting up strace (6.13+ds-1ubuntu1) ...
 92s Setting up xz-utils (5.6.4-1) ...
 92s Setting up gir1.2-glib-2.0:amd64 (2.84.0-1) ...
 92s Setting up linux-modules-6.14.0-10-generic (6.14.0-10.10) ...
 94s Setting up libncursesw6:amd64 (6.5+20250216-2) ...
 94s Setting up libpci3:amd64 (1:3.13.0-2) ...
 94s Setting up python-apt-common (2.9.9build1) ...
 94s Setting up libmm-glib0:amd64 (1.23.4-0ubuntu3) ...
 94s Setting up pnp.ids (0.393-3) ...
 94s Setting up libnl-3-200:amd64 (3.7.0-1) ...
 94s Setting up python3.13-minimal (3.13.2-2) ...
 95s Setting up libgirepository-1.0-1:amd64 (1.83.4-1) ...
 95s Setting up libbinutils:amd64 (2.44-3ubuntu1) ...
 95s Setting up libpython3.13-stdlib:amd64 (3.13.2-2) ...
 95s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2ubuntu5) ...
 95s Setting up rsync (3.4.1+ds1-3) ...
 96s rsync.service is a disabled or a static unit not running, not starting it.
 96s Setting up python3.13-gdbm (3.13.2-2) ...
 96s Setting up libpython3-stdlib:amd64 (3.13.2-2) ...
 96s Setting up ncurses-term (6.5+20250216-2) ...
 96s Setting up libctf0:amd64 (2.44-3ubuntu1) ...
 96s Setting up libpython3.13:amd64 (3.13.2-2) ...
 96s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
 96s Setting up libdebuginfod1t64:amd64 (0.192-4) ...
 96s Setting up linux-headers-virtual (6.14.0-10.10) ...
 96s Setting up libcurl4t64:amd64 (8.12.1-3ubuntu1) ...
 96s Setting up python3.13 (3.13.2-2) ...
 96s Setting up htop (3.4.0-2) ...
 96s Setting up linux-image-6.14.0-10-generic (6.14.0-10.10) ...
 98s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.12.0-16-generic
 98s I: /boot/initrd.img.old is now a symlink to initrd.img-6.12.0-16-generic
 98s I: /boot/vmlinuz is now a symlink to vmlinuz-6.14.0-10-generic
 98s I: /boot/initrd.img is now a symlink to initrd.img-6.14.0-10-generic
 98s Setting up libfwupd3:amd64 (2.0.6-4) ...
 98s Setting up python3 (3.13.2-2) ...
 99s Setting up python3-markupsafe (2.1.5-1build4) ...
 99s Setting up linux-modules-extra-6.14.0-10-generic (6.14.0-10.10) ...
101s Setting up libnl-route-3-200:amd64 (3.7.0-1) ...
101s Setting up hwdata (0.393-3) ...
101s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
101s Setting up libgprofng0:amd64 (2.44-3ubuntu1) ...
101s Setting up linux-perf (6.14.0-10.10) ...
101s Setting up gir1.2-girepository-2.0:amd64 (1.83.4-1) ...
101s Setting up python3-gi (3.50.0-4build1) ...
101s Setting up pciutils (1:3.13.0-2) ...
101s Setting up libnl-genl-3-200:amd64 (3.7.0-1) ...
101s Setting up curl (8.12.1-3ubuntu1) ...
101s Setting up linux-image-virtual (6.14.0-10.10) ...
101s Setting up linux-tools-common (6.14.0-10.10) ...
101s Setting up fwupd (2.0.6-4) ...
102s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
102s fwupd.service is a disabled or a static unit not running, not starting it.
102s Setting up python3-systemd (235-1build6) ...
102s Setting up python3-cffi-backend:amd64 (1.17.1-2build2) ...
102s Setting up binutils-x86-64-linux-gnu (2.44-3ubuntu1) ...
102s Setting up linux-image-generic (6.14.0-10.10) ...
102s Setting up python3-dbus (1.3.2-5build5) ...
102s Setting up linux-tools-6.14.0-10 (6.14.0-10.10) ...
102s Setting up linux-generic (6.14.0-10.10) ...
102s Setting up python3-apt (2.9.9build1) ...
102s Setting up python3-yaml (6.0.2-1build2) ...
102s Setting up python3-lazr.uri (1.0.6-6) ...
102s Setting up binutils (2.44-3ubuntu1) ...
102s Setting up cloud-init-base (25.1-0ubuntu3) ...
104s Setting up linux-virtual (6.14.0-10.10) ...
104s Setting up linux-tools-6.14.0-10-generic (6.14.0-10.10) ...
104s Setting up cloud-init (25.1-0ubuntu3) ...
104s Processing triggers for systemd (257.3-1ubuntu3) ...
104s Processing triggers for man-db (2.13.0-1) ...
106s Processing triggers for dbus (1.16.2-1ubuntu1) ...
106s Processing triggers for libc-bin (2.41-1ubuntu1) ...
106s Processing triggers for initramfs-tools (0.146ubuntu1) ...
106s update-initramfs: Generating /boot/initrd.img-6.12.0-16-generic
106s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
116s Processing triggers for linux-image-6.14.0-10-generic (6.14.0-10.10) ...
116s /etc/kernel/postinst.d/initramfs-tools:
116s update-initramfs: Generating /boot/initrd.img-6.14.0-10-generic
116s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
126s /etc/kernel/postinst.d/zz-update-grub:
126s Sourcing file `/etc/default/grub'
126s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
126s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
126s Generating grub configuration file ...
126s Found linux image: /boot/vmlinuz-6.14.0-10-generic
126s Found initrd image: /boot/initrd.img-6.14.0-10-generic
126s Found linux image: /boot/vmlinuz-6.12.0-16-generic
126s Found initrd image: /boot/initrd.img-6.12.0-16-generic
126s Found linux image: /boot/vmlinuz-6.11.0-8-generic
126s Found initrd image: /boot/initrd.img-6.11.0-8-generic
126s Warning: os-prober will not be executed to detect other bootable partitions.
126s Systems on them will not be added to the GRUB boot configuration.
126s Check GRUB_DISABLE_OS_PROBER documentation entry.
126s Adding boot menu entry for UEFI Firmware Settings ...
127s done
127s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
127s + /usr/lib/apt/apt-helper analyze-pattern ?true
127s + uname -r
127s + sed s/\./\\./g
127s + running_kernel_pattern=^linux-.*6\.12\.0-16-generic.*
127s + apt list ?obsolete
127s + tail -n+2
127s + cut -d/ -f1
127s + grep -v ^linux-.*6\.12\.0-16-generic.*
128s + obsolete_pkgs=linux-headers-6.11.0-8-generic
128s linux-headers-6.11.0-8
128s linux-headers-6.12.0-16
128s linux-image-6.11.0-8-generic
128s linux-modules-6.11.0-8-generic
128s linux-tools-6.11.0-8-generic
128s linux-tools-6.11.0-8
128s linux-tools-6.12.0-16
128s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-headers-6.12.0-16 linux-image-6.11.0-8-generic linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 linux-tools-6.12.0-16
128s Reading package lists...
128s Building dependency tree...
128s Reading state information...
129s Solving dependencies...
129s The following packages will be REMOVED:
129s   libnl-genl-3-200* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
129s   libpython3.12t64* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
129s   linux-headers-6.12.0-16* linux-headers-6.12.0-16-generic*
129s   linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic*
129s   linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* linux-tools-6.12.0-16*
129s   linux-tools-6.12.0-16-generic*
129s 0 upgraded, 0 newly installed, 15 to remove and 0 not upgraded.
129s After this operation, 371 MB disk space will be freed.
129s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 148643 files and directories currently installed.)
129s Removing libnl-genl-3-200:amd64 (3.7.0-1) ...
129s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
129s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
129s Removing libpython3.12t64:amd64 (3.12.9-1) ...
129s Removing libpython3.12-stdlib:amd64 (3.12.9-1) ...
129s Removing libnsl2:amd64 (1.3.0-3build3) ...
129s Removing libpython3.12-minimal:amd64 (3.12.9-1) ...
129s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
130s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
132s Removing linux-headers-6.12.0-16-generic (6.12.0-16.16) ...
133s Removing linux-headers-6.12.0-16 (6.12.0-16.16) ...
134s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ...
135s /etc/kernel/postrm.d/initramfs-tools:
135s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic
135s /etc/kernel/postrm.d/zz-update-grub:
135s Sourcing file `/etc/default/grub'
135s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
135s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg'
135s Generating grub configuration file ...
135s Found linux image: /boot/vmlinuz-6.14.0-10-generic
135s Found initrd image: /boot/initrd.img-6.14.0-10-generic
135s Found linux image: /boot/vmlinuz-6.12.0-16-generic
135s Found initrd image: /boot/initrd.img-6.12.0-16-generic
135s Warning: os-prober will not be executed to detect other bootable partitions.
135s Systems on them will not be added to the GRUB boot configuration.
135s Check GRUB_DISABLE_OS_PROBER documentation entry.
135s Adding boot menu entry for UEFI Firmware Settings ...
135s done
135s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
136s Removing linux-tools-6.12.0-16-generic (6.12.0-16.16) ...
136s Removing linux-tools-6.12.0-16 (6.12.0-16.16) ...
136s Processing triggers for libc-bin (2.41-1ubuntu1) ...
136s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 84830 files and directories currently installed.)
136s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ...
136s Purging configuration files for libpython3.12-minimal:amd64 (3.12.9-1) ...
136s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
136s + grep -q trusty /etc/lsb-release
136s + [ ! -d /usr/share/doc/unattended-upgrades ]
136s + [ ! -d /usr/share/doc/lxd ]
136s + [ ! -d /usr/share/doc/lxd-client ]
136s + [ ! -d /usr/share/doc/snapd ]
136s + type iptables
136s + cat
136s + chmod 755 /etc/rc.local
136s + . /etc/rc.local
136s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
136s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
136s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
136s + uname -m
136s + [ x86_64 = ppc64le ]
136s + [ -d /run/systemd/system ]
136s + systemd-detect-virt --quiet --vm
136s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
136s + cat
136s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
136s + echo COMPRESS=lz4
136s autopkgtest [01:36:10]: upgrading testbed (apt dist-upgrade and autopurge)
136s Reading package lists...
136s Building dependency tree...
137s Reading state information...
137s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
137s Starting 2 pkgProblemResolver with broken count: 0
137s Done
138s Entering ResolveByKeep
138s 
138s Calculating upgrade...
138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
138s Reading package lists...
139s Building dependency tree...
139s Reading state information...
139s Starting pkgProblemResolver with broken count: 0
139s Starting 2 pkgProblemResolver with broken count: 0
139s Done
139s Solving dependencies...
140s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
140s autopkgtest [01:36:14]: rebooting testbed after setup commands that affected boot
160s autopkgtest [01:36:34]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 16:07:00 UTC 2025
161s autopkgtest [01:36:35]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller
163s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B]
163s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB]
163s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B]
163s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC
163s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
163s gpgv:                issuer "emollier@debian.org"
163s gpgv: Can't check signature: No public key
163s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found
163s autopkgtest [01:36:37]: testing package mcaller version 1.0.3+git20210624.b415090-3
164s autopkgtest [01:36:38]: build not needed
164s autopkgtest [01:36:38]: test run-unit-test: preparing testbed
165s Reading package lists...
165s Building dependency tree...
165s Reading state information...
165s Starting pkgProblemResolver with broken count: 0
165s Starting 2 pkgProblemResolver with broken count: 0
165s Done
166s The following NEW packages will be installed:
166s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
166s   fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 libfontconfig1
166s   libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310
166s   libhdf5-hl-310 libhts3t64 libhtscodecs2 libimagequant0 libjbig0
166s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
166s   liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 libqhull-r8.0
166s   libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7
166s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1
166s   libxslt1.1 libxss1 mcaller python-matplotlib-data python3-biopython
166s   python3-brotli python3-cairo python3-contourpy python3-cycler
166s   python3-dateutil python3-decorator python3-fonttools python3-freetype
166s   python3-fs python3-h5py python3-h5py-serial python3-joblib
166s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
166s   python3-mpmath python3-numpy python3-numpy-dev python3-packaging
166s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
166s   python3-platformdirs python3-pysam python3-pytz python3-reportlab
166s   python3-rlpycairo python3-scipy python3-seaborn python3-sklearn
166s   python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk
166s   python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk python3.13-tk
166s   sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings
166s   xfonts-utils xml-core
166s 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded.
166s Need to get 115 MB of archives.
166s After this operation, 477 MB of additional disk space will be used.
166s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB]
166s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
166s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250222-0ubuntu1 [919 kB]
166s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
166s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB]
166s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB]
166s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
166s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
166s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
166s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB]
166s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
166s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
166s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB]
166s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB]
166s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
166s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
166s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
166s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
166s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
166s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
166s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB]
166s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B]
166s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB]
166s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
166s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
166s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
166s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
166s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
166s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
166s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250222-0ubuntu1 [148 kB]
166s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
166s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
166s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
166s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
166s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
166s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB]
166s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.21+ds-1 [514 kB]
166s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
166s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
166s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
166s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
166s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
166s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
166s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
166s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
166s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
166s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
166s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB]
166s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
166s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
166s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
166s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
166s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB]
166s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB]
166s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB]
166s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-3 [205 kB]
166s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
166s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB]
166s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB]
166s Get:60 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [4359 kB]
166s Get:61 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB]
166s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.13.0-1 [1230 kB]
166s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.13.0-1 [7978 B]
166s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB]
166s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-2 [107 kB]
166s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B]
166s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B]
166s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB]
166s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB]
166s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2build2 [124 kB]
166s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB]
166s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B]
166s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.3.1-1 [1137 kB]
167s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB]
167s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB]
167s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.85+dfsg-2build1 [1739 kB]
167s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-7build1 [2934 kB]
167s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB]
167s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB]
167s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
167s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB]
167s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB]
167s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-7 [90.8 kB]
167s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1build1 [1408 kB]
167s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1build1 [27.0 kB]
167s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
167s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-5 [4229 kB]
167s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
167s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB]
167s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
167s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB]
167s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB]
167s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB]
167s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-7build1 [17.4 MB]
167s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB]
167s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B]
167s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8build1 [5332 kB]
167s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB]
167s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-seaborn all 0.13.2-4.1 [225 kB]
167s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pysam amd64 0.23.0+ds-1build1 [3966 kB]
167s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB]
168s Fetched 115 MB in 2s (76.2 MB/s)
168s Selecting previously unselected package python3-numpy-dev:amd64.
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168s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ...
168s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ...
168s Selecting previously unselected package libblas3:amd64.
168s Preparing to unpack .../001-libblas3_3.12.1-2_amd64.deb ...
168s Unpacking libblas3:amd64 (3.12.1-2) ...
168s Selecting previously unselected package libgfortran5:amd64.
168s Preparing to unpack .../002-libgfortran5_15-20250222-0ubuntu1_amd64.deb ...
168s Unpacking libgfortran5:amd64 (15-20250222-0ubuntu1) ...
168s Selecting previously unselected package liblapack3:amd64.
168s Preparing to unpack .../003-liblapack3_3.12.1-2_amd64.deb ...
168s Unpacking liblapack3:amd64 (3.12.1-2) ...
168s Selecting previously unselected package python3-numpy.
168s Preparing to unpack .../004-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ...
168s Unpacking python3-numpy (1:2.2.3+ds-5) ...
168s Selecting previously unselected package sgml-base.
168s Preparing to unpack .../005-sgml-base_1.31_all.deb ...
168s Unpacking sgml-base (1.31) ...
168s Selecting previously unselected package libtcl8.6:amd64.
168s Preparing to unpack .../006-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
168s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
168s Selecting previously unselected package fonts-dejavu-mono.
168s Preparing to unpack .../007-fonts-dejavu-mono_2.37-8_all.deb ...
168s Unpacking fonts-dejavu-mono (2.37-8) ...
168s Selecting previously unselected package fonts-dejavu-core.
168s Preparing to unpack .../008-fonts-dejavu-core_2.37-8_all.deb ...
168s Unpacking fonts-dejavu-core (2.37-8) ...
168s Selecting previously unselected package libfontenc1:amd64.
168s Preparing to unpack .../009-libfontenc1_1%3a1.1.8-1build1_amd64.deb ...
168s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ...
168s Selecting previously unselected package x11-common.
169s Preparing to unpack .../010-x11-common_1%3a7.7+23ubuntu3_all.deb ...
169s Unpacking x11-common (1:7.7+23ubuntu3) ...
169s Selecting previously unselected package xfonts-encodings.
169s Preparing to unpack .../011-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
169s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
169s Selecting previously unselected package xfonts-utils.
169s Preparing to unpack .../012-xfonts-utils_1%3a7.7+7_amd64.deb ...
169s Unpacking xfonts-utils (1:7.7+7) ...
169s Selecting previously unselected package fonts-urw-base35.
169s Preparing to unpack .../013-fonts-urw-base35_20200910-8_all.deb ...
169s Unpacking fonts-urw-base35 (20200910-8) ...
169s Selecting previously unselected package fontconfig-config.
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169s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
169s Selecting previously unselected package libfontconfig1:amd64.
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169s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
169s Selecting previously unselected package libxrender1:amd64.
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169s Selecting previously unselected package libxft2:amd64.
169s Preparing to unpack .../017-libxft2_2.3.6-1build1_amd64.deb ...
169s Unpacking libxft2:amd64 (2.3.6-1build1) ...
169s Selecting previously unselected package libxss1:amd64.
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169s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
169s Selecting previously unselected package libtk8.6:amd64.
169s Preparing to unpack .../019-libtk8.6_8.6.16-1_amd64.deb ...
169s Unpacking libtk8.6:amd64 (8.6.16-1) ...
169s Selecting previously unselected package tk8.6-blt2.5.
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169s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ...
169s Selecting previously unselected package blt.
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169s Unpacking blt (2.5.3+dfsg-8) ...
169s Selecting previously unselected package fonts-lyx.
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169s Unpacking fonts-lyx (2.4.3-1) ...
169s Selecting previously unselected package libaec0:amd64.
169s Preparing to unpack .../023-libaec0_1.1.3-1_amd64.deb ...
169s Unpacking libaec0:amd64 (1.1.3-1) ...
169s Selecting previously unselected package libpixman-1-0:amd64.
169s Preparing to unpack .../024-libpixman-1-0_0.44.0-3_amd64.deb ...
169s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
169s Selecting previously unselected package libxcb-render0:amd64.
169s Preparing to unpack .../025-libxcb-render0_1.17.0-2_amd64.deb ...
169s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
169s Selecting previously unselected package libxcb-shm0:amd64.
169s Preparing to unpack .../026-libxcb-shm0_1.17.0-2_amd64.deb ...
169s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
169s Selecting previously unselected package libcairo2:amd64.
169s Preparing to unpack .../027-libcairo2_1.18.2-2_amd64.deb ...
169s Unpacking libcairo2:amd64 (1.18.2-2) ...
169s Selecting previously unselected package libdeflate0:amd64.
169s Preparing to unpack .../028-libdeflate0_1.23-1_amd64.deb ...
169s Unpacking libdeflate0:amd64 (1.23-1) ...
170s Selecting previously unselected package libgomp1:amd64.
170s Preparing to unpack .../029-libgomp1_15-20250222-0ubuntu1_amd64.deb ...
170s Unpacking libgomp1:amd64 (15-20250222-0ubuntu1) ...
170s Selecting previously unselected package libgraphite2-3:amd64.
170s Preparing to unpack .../030-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
170s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
170s Selecting previously unselected package libharfbuzz0b:amd64.
170s Preparing to unpack .../031-libharfbuzz0b_10.2.0-1_amd64.deb ...
170s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
170s Selecting previously unselected package libsz2:amd64.
170s Preparing to unpack .../032-libsz2_1.1.3-1_amd64.deb ...
170s Unpacking libsz2:amd64 (1.1.3-1) ...
170s Selecting previously unselected package libhdf5-310:amd64.
170s Preparing to unpack .../033-libhdf5-310_1.14.5+repack-3_amd64.deb ...
170s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ...
170s Selecting previously unselected package libhdf5-hl-310:amd64.
170s Preparing to unpack .../034-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
170s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
170s Selecting previously unselected package libhtscodecs2:amd64.
170s Preparing to unpack .../035-libhtscodecs2_1.6.1-2_amd64.deb ...
170s Unpacking libhtscodecs2:amd64 (1.6.1-2) ...
170s Selecting previously unselected package libhts3t64:amd64.
170s Preparing to unpack .../036-libhts3t64_1.21+ds-1_amd64.deb ...
170s Unpacking libhts3t64:amd64 (1.21+ds-1) ...
170s Selecting previously unselected package libimagequant0:amd64.
170s Preparing to unpack .../037-libimagequant0_2.18.0-1build1_amd64.deb ...
170s Unpacking libimagequant0:amd64 (2.18.0-1build1) ...
170s Selecting previously unselected package libjpeg-turbo8:amd64.
170s Preparing to unpack .../038-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
170s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
170s Selecting previously unselected package libjpeg8:amd64.
170s Preparing to unpack .../039-libjpeg8_8c-2ubuntu11_amd64.deb ...
170s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
170s Selecting previously unselected package libjs-jquery.
170s Preparing to unpack .../040-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
170s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
170s Selecting previously unselected package libjs-jquery-ui.
170s Preparing to unpack .../041-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
170s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
170s Selecting previously unselected package liblbfgsb0:amd64.
170s Preparing to unpack .../042-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ...
170s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
170s Selecting previously unselected package liblcms2-2:amd64.
170s Preparing to unpack .../043-liblcms2-2_2.16-2_amd64.deb ...
170s Unpacking liblcms2-2:amd64 (2.16-2) ...
170s Selecting previously unselected package liblerc4:amd64.
170s Preparing to unpack .../044-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
170s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
170s Selecting previously unselected package liblzf1:amd64.
170s Preparing to unpack .../045-liblzf1_3.6-4_amd64.deb ...
170s Unpacking liblzf1:amd64 (3.6-4) ...
170s Selecting previously unselected package libqhull-r8.0:amd64.
170s Preparing to unpack .../046-libqhull-r8.0_2020.2-6build1_amd64.deb ...
170s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ...
170s Selecting previously unselected package libraqm0:amd64.
170s Preparing to unpack .../047-libraqm0_0.10.2-1_amd64.deb ...
170s Unpacking libraqm0:amd64 (0.10.2-1) ...
170s Selecting previously unselected package libsharpyuv0:amd64.
170s Preparing to unpack .../048-libsharpyuv0_1.5.0-0.1_amd64.deb ...
170s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
170s Selecting previously unselected package libjbig0:amd64.
170s Preparing to unpack .../049-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
170s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
170s Selecting previously unselected package libwebp7:amd64.
170s Preparing to unpack .../050-libwebp7_1.5.0-0.1_amd64.deb ...
170s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
170s Selecting previously unselected package libtiff6:amd64.
170s Preparing to unpack .../051-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
170s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
170s Selecting previously unselected package libwebpdemux2:amd64.
170s Preparing to unpack .../052-libwebpdemux2_1.5.0-0.1_amd64.deb ...
170s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ...
170s Selecting previously unselected package libwebpmux3:amd64.
170s Preparing to unpack .../053-libwebpmux3_1.5.0-0.1_amd64.deb ...
170s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ...
170s Selecting previously unselected package libxslt1.1:amd64.
170s Preparing to unpack .../054-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ...
170s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ...
170s Selecting previously unselected package python3-joblib.
170s Preparing to unpack .../055-python3-joblib_1.4.2-3_all.deb ...
170s Unpacking python3-joblib (1.4.2-3) ...
170s Selecting previously unselected package python3-decorator.
170s Preparing to unpack .../056-python3-decorator_5.1.1-5_all.deb ...
170s Unpacking python3-decorator (5.1.1-5) ...
170s Selecting previously unselected package python3-scipy.
170s Preparing to unpack .../057-python3-scipy_1.14.1-4ubuntu2_amd64.deb ...
170s Unpacking python3-scipy (1.14.1-4ubuntu2) ...
171s Selecting previously unselected package python3-threadpoolctl.
171s Preparing to unpack .../058-python3-threadpoolctl_3.1.0-1_all.deb ...
171s Unpacking python3-threadpoolctl (3.1.0-1) ...
171s Selecting previously unselected package python3-sklearn-lib:amd64.
171s Preparing to unpack .../059-python3-sklearn-lib_1.4.2+dfsg-8_amd64.deb ...
171s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ...
171s Selecting previously unselected package python3-sklearn.
171s Preparing to unpack .../060-python3-sklearn_1.4.2+dfsg-8_all.deb ...
171s Unpacking python3-sklearn (1.4.2+dfsg-8) ...
171s Selecting previously unselected package python3-h5py-serial.
171s Preparing to unpack .../061-python3-h5py-serial_3.13.0-1_amd64.deb ...
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171s Selecting previously unselected package python3-h5py.
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171s Selecting previously unselected package python3.12-tk.
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171s Selecting previously unselected package python3-pil.imagetk:amd64.
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171s Selecting previously unselected package libopenjp2-7:amd64.
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171s Selecting previously unselected package python3-pil:amd64.
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172s Unpacking python3-pil:amd64 (11.1.0-5build1) ...
172s Selecting previously unselected package python3-cairo.
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172s Selecting previously unselected package python3-freetype.
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172s Selecting previously unselected package python3-rlpycairo.
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172s Selecting previously unselected package python3-reportlab.
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172s Selecting previously unselected package xml-core.
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172s Selecting previously unselected package w3c-sgml-lib.
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172s Selecting previously unselected package python3-biopython.
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172s Selecting previously unselected package python3-dateutil.
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172s Selecting previously unselected package python3-contourpy.
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172s Selecting previously unselected package python3-cycler.
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172s Selecting previously unselected package python3-brotli.
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172s Selecting previously unselected package python3-fs.
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172s Unpacking python3-fs (2.4.16-7) ...
172s Selecting previously unselected package python3-lxml:amd64.
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172s Unpacking python3-lxml:amd64 (5.3.1-1build1) ...
172s Selecting previously unselected package python3-lz4.
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173s Selecting previously unselected package python3-ufolib2.
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175s Setting up libhtscodecs2:amd64 (1.6.1-2) ...
175s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
175s Setting up liblcms2-2:amd64 (2.16-2) ...
175s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
175s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
175s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
175s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
175s Setting up python3-joblib (1.4.2-3) ...
175s Setting up python3-lz4 (4.4.0+dfsg-1build1) ...
175s Setting up libxcb-render0:amd64 (1.17.0-2) ...
175s Setting up python3-unicodedata2 (15.1.0+ds-1build3) ...
175s Setting up fonts-lyx (2.4.3-1) ...
175s Setting up python3-threadpoolctl (3.1.0-1) ...
175s Setting up x11-common (1:7.7+23ubuntu3) ...
175s Setting up libdeflate0:amd64 (1.23-1) ...
175s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ...
175s Setting up python3-pytz (2025.1-3) ...
176s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
176s Setting up libgomp1:amd64 (15-20250222-0ubuntu1) ...
176s Setting up python3-freetype (2.5.1-1) ...
176s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
176s Setting up libaec0:amd64 (1.1.3-1) ...
176s Setting up python3-platformdirs (4.3.6-1) ...
176s Setting up python3-tz (2025.1-3) ...
176s Setting up python3-fs (2.4.16-7) ...
176s Setting up unicode-data (15.1.0-1) ...
176s Setting up python3-decorator (5.1.1-5) ...
176s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ...
176s Setting up libblas3:amd64 (3.12.1-2) ...
176s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
176s Setting up python3-packaging (24.2-1) ...
176s Setting up python3-brotli (1.1.0-2build4) ...
176s Setting up liblzf1:amd64 (3.6-4) ...
176s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
176s Setting up python3-cycler (0.12.1-1) ...
176s Setting up libimagequant0:amd64 (2.18.0-1build1) ...
176s Setting up fonts-dejavu-mono (2.37-8) ...
176s Setting up python3-kiwisolver (1.4.7-3build1) ...
177s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ...
177s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
177s Setting up fonts-dejavu-core (2.37-8) ...
177s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
177s Setting up libgfortran5:amd64 (15-20250222-0ubuntu1) ...
177s Setting up libwebp7:amd64 (1.5.0-0.1) ...
177s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ...
177s Setting up libhts3t64:amd64 (1.21+ds-1) ...
177s Setting up libopenjp2-7:amd64 (2.5.3-2) ...
177s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
177s Setting up python3-dateutil (2.9.0-3) ...
177s Setting up sgml-base (1.31) ...
177s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
177s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
177s Setting up python3-mpmath (1.3.0-1) ...
177s Setting up python-matplotlib-data (3.8.3-7build1) ...
177s Setting up libwebpmux3:amd64 (1.5.0-0.1) ...
177s Setting up libsz2:amd64 (1.1.3-1) ...
177s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
177s Setting up python3-sympy (1.13.3-5) ...
182s Setting up liblapack3:amd64 (3.12.1-2) ...
182s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
182s Setting up python3-pysam (0.23.0+ds-1build1) ...
182s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
183s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ...
183s Setting up xfonts-utils (1:7.7+7) ...
183s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
183s Setting up libraqm0:amd64 (0.10.2-1) ...
183s Setting up python3-numpy (1:2.2.3+ds-5) ...
184s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
184s Setting up python3-lxml:amd64 (5.3.1-1build1) ...
184s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
184s Setting up xml-core (0.19) ...
184s Setting up python3-contourpy (1.3.1-1build1) ...
185s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
185s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
185s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
185s Setting up libxft2:amd64 (2.3.6-1build1) ...
185s Setting up python3-scipy (1.14.1-4ubuntu2) ...
187s Setting up libtk8.6:amd64 (8.6.16-1) ...
187s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8build1) ...
187s Setting up python3.12-tk (3.12.9-1) ...
187s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ...
187s Setting up python3-h5py-serial (3.13.0-1) ...
188s Setting up fonts-urw-base35 (20200910-8) ...
188s Setting up libcairo2:amd64 (1.18.2-2) ...
188s Setting up python3.13-tk (3.13.2-2) ...
188s Setting up python3-pil:amd64 (11.1.0-5build1) ...
188s Setting up python3-pandas (2.2.3+dfsg-8build1) ...
192s Setting up python3-h5py (3.13.0-1) ...
192s Setting up python3-sklearn (1.4.2+dfsg-8) ...
194s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ...
194s Setting up python3-cairo (1.26.1-2build2) ...
194s Setting up blt (2.5.3+dfsg-8) ...
194s Setting up python3-tk:amd64 (3.13.1-1) ...
194s Setting up python3-pil.imagetk:amd64 (11.1.0-5build1) ...
194s Setting up python3-rlpycairo (0.3.0-3) ...
194s Setting up python3-reportlab (4.3.1-1) ...
195s Setting up python3-fonttools (4.55.3-2build1) ...
195s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
195s Setting up python3-matplotlib (3.8.3-7build1) ...
197s Setting up python3-seaborn (0.13.2-4.1) ...
197s Processing triggers for man-db (2.13.0-1) ...
198s Processing triggers for libc-bin (2.41-1ubuntu1) ...
198s Processing triggers for sgml-base (1.31) ...
198s Setting up w3c-sgml-lib (1.3-3) ...
225s Setting up python3-biopython (1.85+dfsg-2build1) ...
226s Setting up mcaller (1.0.3+git20210624.b415090-3) ...
227s autopkgtest [01:37:41]: test run-unit-test: [-----------------------
228s testdata/
228s 1 contigs
228s 1 threads
228s thread finished processing...:
228s 35 observations
228s 35 positions
228s 0 regions with multiple methylated bases
228s 0 observations with skips included
228s 8 observations with too many skips
228s Finished extracting signals
229s testdata/
229s 1 contigs
229s 1 threads
229s thread finished processing...:
229s 9 observations
229s 9 positions
229s 0 regions with multiple methylated bases
229s 0 observations with skips included
229s 2 observations with too many skips
229s Finished extracting signals
229s testdata/
229s 1 contigs
229s 4 threads
230s thread finished processing...:
230s 9 observations
230s 9 positions
230s 0 regions with multiple methylated bases
230s 0 observations with skips included
230s 4 observations with too many skips
230s thread finished processing...:
230s 28 observations
230s 28 positions
230s 0 regions with multiple methylated bases
230s 0 observations with skips included
230s 6 observations with too many skips
230s Error: could not find sequence for reference contig li
230s thread finished processing...:
230s 16 observations
230s 16 positions
230s 0 regions with multiple methylated bases
230s 0 observations with skips included
230s 6 observations with too many skips
230s thread finished processing...:
230s 44 observations
230s 44 positions
230s 1 regions with multiple methylated bases
230s 0 observations with skips included
230s 10 observations with too many skips
230s Finished extracting signals
230s Merging files...
230s Training...
230s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A']
230s [[np.float64(-0.18999999999999992), np.float64(-1.6799999999999997), np.float64(-2.3), np.float64(0.56), np.float64(-1.41), np.float64(1.48), np.float64(7.055265349382997)], [np.float64(-1.1300000000000001), np.float64(-1.67), np.float64(-1.1), np.float64(-0.5774999999999999), np.float64(0.42), np.float64(1.0225), np.float64(7.055265349382997)], [np.float64(0.0050000000000000044), np.float64(-0.29500000000000004), np.float64(-0.54), np.float64(3.96), np.float64(1.47), np.float64(0.06499999999999995), np.float64(7.055265349382997)], [np.float64(3.255), np.float64(3.925), np.float64(0.03999999999999998), np.float64(-0.15599999999999997), np.float64(-1.01), np.float64(1.3533333333333333), np.float64(7.055265349382997)], [np.float64(-0.07999999999999996), np.float64(-1.3666666666666665), np.float64(0.84), np.float64(-0.5449999999999999), np.float64(-3.22), np.float64(-1.53), np.float64(7.055265349382997)], [np.float64(-1.74), np.float64(-2.56), np.float64(-2.0774999999999997), np.float64(1.84), np.float64(-0.09999999999999998), np.float64(-0.3), np.float64(7.055265349382997)], [np.float64(1.92), np.float64(2.75), np.float64(1.59), np.float64(1.6433333333333333), np.float64(1.59), np.float64(1.27), np.float64(7.055265349382997)], [np.float64(-1.44), np.float64(-5.03), np.float64(1.4449999999999998), np.float64(0.4000000000000001), np.float64(-0.588), np.float64(-0.55), np.float64(7.055265349382997)], [np.float64(-1.4433333333333334), np.float64(-0.020000000000000018), np.float64(-0.0366666666666667), np.float64(-0.5499999999999999), np.float64(0.64), np.float64(-2.71), np.float64(7.055265349382997)], [np.float64(-1.23), np.float64(-1.635), np.float64(-0.24), np.float64(1.1033333333333333), np.float64(-2.215), np.float64(-2.93), np.float64(7.055265349382997)]]
230s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AAATGMGATTT', 'AGTAGMTTGAT', 'ACTTAMCCGGT']
230s NN general model scores: 0.5,0.25,0.625,0.625,0.75
230s Cross validation accuracy: 0.55 (+/- 0.34)
230s Finished training
230s PASS
231s autopkgtest [01:37:45]: test run-unit-test: -----------------------]
231s autopkgtest [01:37:45]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
231s run-unit-test        PASS
231s autopkgtest [01:37:45]: @@@@@@@@@@@@@@@@@@@@ summary
231s run-unit-test        PASS
247s nova [W] Skipping flock for amd64
247s Creating nova instance adt-plucky-amd64-mcaller-20250316-013353-juju-7f2275-prod-proposed-migration-environment-15-44f90168-2c59-425a-89cc-1f895beead6e from image adt/ubuntu-plucky-amd64-server-20250306.img (UUID 60d877d7-b74c-4f24-920d-f4570db0a338)...
247s nova [W] Timed out waiting for 2c1cda0a-96d1-4f01-8cca-11af87605740 to get deleted.