0s autopkgtest [09:33:25]: starting date and time: 2024-11-26 09:33:25+0000 0s autopkgtest [09:33:25]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [09:33:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yti0xsss/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:astropy --apt-upgrade imexam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=astropy/7.0.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-7.secgroup --name adt-plucky-amd64-imexam-20241126-093324-juju-7f2275-prod-proposed-migration-environment-2-3cb79fed-c7ec-49e7-96cc-903a3ae8f25a --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 60s autopkgtest [09:34:25]: testbed dpkg architecture: amd64 60s autopkgtest [09:34:25]: testbed apt version: 2.9.8 60s autopkgtest [09:34:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 60s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 60s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 60s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.2 kB] 60s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [58.7 kB] 60s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [811 kB] 60s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [93.2 kB] 60s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [50.7 kB] 60s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.6 kB] 60s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2572 B] 60s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [670 kB] 60s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [253 kB] 60s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [20.4 kB] 60s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [5684 B] 60s Fetched 2104 kB in 0s (7757 kB/s) 60s Reading package lists... 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 63s Calculating upgrade... 63s The following package was automatically installed and is no longer required: 63s libsgutils2-1.46-2 63s Use 'sudo apt autoremove' to remove it. 63s The following NEW packages will be installed: 63s libsgutils2-1.48 63s The following packages will be upgraded: 63s amd64-microcode apt apt-utils bash bpftrace curl debconf debconf-i18n 63s distro-info dracut-install fwupd-signed gir1.2-girepository-2.0 63s gir1.2-glib-2.0 hostname init init-system-helpers intel-microcode 63s libapt-pkg6.0t64 libaudit-common libaudit1 libcurl3t64-gnutls libcurl4t64 63s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data liblzma5 63s libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth5 63s libpolkit-agent-1-0 libpolkit-gobject-1-0 libselinux1 libsemanage-common 63s libsemanage2 linux-base lto-disabled-list lxd-installer openssh-client 63s openssh-server openssh-sftp-server pinentry-curses plymouth 63s plymouth-theme-ubuntu-text python-apt-common python3-apt python3-blinker 63s python3-debconf python3-jsonschema-specifications python3-rpds-py sg3-utils 63s sg3-utils-udev vim-common vim-tiny xxd xz-utils 63s 57 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 63s Need to get 22.8 MB of archives. 63s After this operation, 3749 kB of additional disk space will be used. 63s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 bash amd64 5.2.32-1ubuntu2 [918 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 hostname amd64 3.25 [11.1 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 init-system-helpers all 1.67ubuntu1 [39.1 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma5 amd64 5.6.3-1 [156 kB] 63s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg6.0t64 amd64 2.9.14ubuntu1 [1122 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.14ubuntu1 [1385 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.14ubuntu1 [224 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit-common all 1:4.0.2-2ubuntu1 [6578 B] 63s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libaudit1 amd64 1:4.0.2-2ubuntu1 [53.9 kB] 63s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 debconf-i18n all 1.5.87ubuntu1 [204 kB] 63s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-debconf all 1.5.87ubuntu1 [4156 B] 63s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 debconf all 1.5.87ubuntu1 [124 kB] 63s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam0g amd64 1.5.3-7ubuntu4 [69.6 kB] 63s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libselinux1 amd64 3.7-3ubuntu1 [86.9 kB] 63s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-modules-bin amd64 1.5.3-7ubuntu4 [53.7 kB] 63s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-modules amd64 1.5.3-7ubuntu4 [294 kB] 63s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 init amd64 1.67ubuntu1 [6428 B] 63s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-sftp-server amd64 1:9.9p1-3ubuntu2 [41.2 kB] 63s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-server amd64 1:9.9p1-3ubuntu2 [625 kB] 63s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 openssh-client amd64 1:9.9p1-3ubuntu2 [1080 kB] 63s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpam-runtime all 1.5.3-7ubuntu4 [40.8 kB] 63s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage-common all 3.7-2build1 [7186 B] 63s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libsemanage2 amd64 3.7-2build1 [105 kB] 63s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 distro-info amd64 1.12 [20.0 kB] 63s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-girepository-2.0 amd64 1.82.0-2 [25.3 kB] 63s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gir1.2-glib-2.0 amd64 2.82.2-3 [182 kB] 63s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1655 kB] 63s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgirepository-1.0-1 amd64 1.82.0-2 [88.7 kB] 63s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libglib2.0-data all 2.82.2-3 [51.7 kB] 63s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 python-apt-common all 2.9.0ubuntu2 [20.3 kB] 63s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-apt amd64 2.9.0ubuntu2 [182 kB] 63s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 vim-tiny amd64 2:9.1.0861-1ubuntu1 [1037 kB] 63s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 vim-common all 2:9.1.0861-1ubuntu1 [395 kB] 63s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 xxd amd64 2:9.1.0861-1ubuntu1 [67.8 kB] 63s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libplymouth5 amd64 24.004.60-2ubuntu4 [145 kB] 63s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 plymouth-theme-ubuntu-text amd64 24.004.60-2ubuntu4 [10.2 kB] 63s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 plymouth amd64 24.004.60-2ubuntu4 [139 kB] 63s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 xz-utils amd64 5.6.3-1 [276 kB] 63s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 bpftrace amd64 0.21.2-2ubuntu3 [1787 kB] 63s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 curl amd64 8.11.0-1ubuntu2 [250 kB] 63s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4t64 amd64 8.11.0-1ubuntu2 [429 kB] 63s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 dracut-install amd64 105-2ubuntu2 [35.9 kB] 63s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 fwupd-signed amd64 1.55+1.7-1 [30.6 kB] 63s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl3t64-gnutls amd64 8.11.0-1ubuntu2 [423 kB] 63s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpolkit-agent-1-0 amd64 125-2ubuntu1 [18.2 kB] 63s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpolkit-gobject-1-0 amd64 125-2ubuntu1 [49.8 kB] 63s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libsgutils2-1.48 amd64 1.48-0ubuntu1 [124 kB] 63s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 linux-base all 4.10.1ubuntu1 [34.8 kB] 63s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 lto-disabled-list all 54 [12.2 kB] 63s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 10 [5264 B] 63s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 pinentry-curses amd64 1.3.1-0ubuntu2 [41.6 kB] 63s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-blinker all 1.9.0-1 [10.7 kB] 63s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-rpds-py amd64 0.21.0-2ubuntu1 [323 kB] 63s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jsonschema-specifications all 2023.12.1-2 [9116 B] 63s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 sg3-utils amd64 1.48-0ubuntu1 [1042 kB] 63s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 sg3-utils-udev all 1.48-0ubuntu1 [6608 B] 63s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 amd64-microcode amd64 3.20240820.1ubuntu1 [187 kB] 63s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intel-microcode amd64 3.20241112.1ubuntu2 [7055 kB] 64s Preconfiguring packages ... 64s Fetched 22.8 MB in 0s (54.3 MB/s) 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75624 files and directories currently installed.) 64s Preparing to unpack .../bash_5.2.32-1ubuntu2_amd64.deb ... 64s Unpacking bash (5.2.32-1ubuntu2) over (5.2.32-1ubuntu1) ... 64s Setting up bash (5.2.32-1ubuntu2) ... 64s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75624 files and directories currently installed.) 64s Preparing to unpack .../hostname_3.25_amd64.deb ... 64s Unpacking hostname (3.25) over (3.23+nmu2ubuntu2) ... 64s Setting up hostname (3.25) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75624 files and directories currently installed.) 64s Preparing to unpack .../init-system-helpers_1.67ubuntu1_all.deb ... 64s Unpacking init-system-helpers (1.67ubuntu1) over (1.66ubuntu1) ... 64s Setting up init-system-helpers (1.67ubuntu1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75624 files and directories currently installed.) 64s Preparing to unpack .../liblzma5_5.6.3-1_amd64.deb ... 64s Unpacking liblzma5:amd64 (5.6.3-1) over (5.6.2-2) ... 64s Setting up liblzma5:amd64 (5.6.3-1) ... 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75624 files and directories currently installed.) 64s Preparing to unpack .../libapt-pkg6.0t64_2.9.14ubuntu1_amd64.deb ... 64s Unpacking libapt-pkg6.0t64:amd64 (2.9.14ubuntu1) over (2.9.8) ... 65s Setting up libapt-pkg6.0t64:amd64 (2.9.14ubuntu1) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75624 files and directories currently installed.) 65s Preparing to unpack .../apt_2.9.14ubuntu1_amd64.deb ... 65s Unpacking apt (2.9.14ubuntu1) over (2.9.8) ... 65s Setting up apt (2.9.14ubuntu1) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 65s Preparing to unpack .../apt-utils_2.9.14ubuntu1_amd64.deb ... 65s Unpacking apt-utils (2.9.14ubuntu1) over (2.9.8) ... 66s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu1_all.deb ... 66s Unpacking libaudit-common (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 66s Setting up libaudit-common (1:4.0.2-2ubuntu1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 66s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu1_amd64.deb ... 66s Unpacking libaudit1:amd64 (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ... 66s Setting up libaudit1:amd64 (1:4.0.2-2ubuntu1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 66s Preparing to unpack .../debconf-i18n_1.5.87ubuntu1_all.deb ... 66s Unpacking debconf-i18n (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 66s Preparing to unpack .../python3-debconf_1.5.87ubuntu1_all.deb ... 66s Unpacking python3-debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 66s Preparing to unpack .../debconf_1.5.87ubuntu1_all.deb ... 66s Unpacking debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ... 66s Setting up debconf (1.5.87ubuntu1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 66s Preparing to unpack .../libpam0g_1.5.3-7ubuntu4_amd64.deb ... 66s Unpacking libpam0g:amd64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 66s Setting up libpam0g:amd64 (1.5.3-7ubuntu4) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 66s Preparing to unpack .../libselinux1_3.7-3ubuntu1_amd64.deb ... 66s Unpacking libselinux1:amd64 (3.7-3ubuntu1) over (3.5-2ubuntu5) ... 66s Setting up libselinux1:amd64 (3.7-3ubuntu1) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 66s Preparing to unpack .../libpam-modules-bin_1.5.3-7ubuntu4_amd64.deb ... 66s Unpacking libpam-modules-bin (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 66s Setting up libpam-modules-bin (1.5.3-7ubuntu4) ... 67s pam_namespace.service is a disabled or a static unit not running, not starting it. 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 67s Preparing to unpack .../libpam-modules_1.5.3-7ubuntu4_amd64.deb ... 67s Unpacking libpam-modules:amd64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 67s Setting up libpam-modules:amd64 (1.5.3-7ubuntu4) ... 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75616 files and directories currently installed.) 67s Preparing to unpack .../init_1.67ubuntu1_amd64.deb ... 67s Unpacking init (1.67ubuntu1) over (1.66ubuntu1) ... 67s Preparing to unpack .../openssh-sftp-server_1%3a9.9p1-3ubuntu2_amd64.deb ... 67s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 67s Preparing to unpack .../openssh-server_1%3a9.9p1-3ubuntu2_amd64.deb ... 67s Unpacking openssh-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 67s Preparing to unpack .../openssh-client_1%3a9.9p1-3ubuntu2_amd64.deb ... 67s Unpacking openssh-client (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ... 67s Preparing to unpack .../libpam-runtime_1.5.3-7ubuntu4_all.deb ... 67s Unpacking libpam-runtime (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ... 68s Setting up libpam-runtime (1.5.3-7ubuntu4) ... 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75618 files and directories currently installed.) 68s Preparing to unpack .../libsemanage-common_3.7-2build1_all.deb ... 68s Unpacking libsemanage-common (3.7-2build1) over (3.5-1build6) ... 68s Setting up libsemanage-common (3.7-2build1) ... 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75617 files and directories currently installed.) 68s Preparing to unpack .../libsemanage2_3.7-2build1_amd64.deb ... 68s Unpacking libsemanage2:amd64 (3.7-2build1) over (3.5-1build6) ... 68s Setting up libsemanage2:amd64 (3.7-2build1) ... 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75617 files and directories currently installed.) 68s Preparing to unpack .../00-distro-info_1.12_amd64.deb ... 68s Unpacking distro-info (1.12) over (1.9) ... 68s Preparing to unpack .../01-gir1.2-girepository-2.0_1.82.0-2_amd64.deb ... 68s Unpacking gir1.2-girepository-2.0:amd64 (1.82.0-2) over (1.80.1-4) ... 68s Preparing to unpack .../02-gir1.2-glib-2.0_2.82.2-3_amd64.deb ... 68s Unpacking gir1.2-glib-2.0:amd64 (2.82.2-3) over (2.82.1-0ubuntu1) ... 68s Preparing to unpack .../03-libglib2.0-0t64_2.82.2-3_amd64.deb ... 68s Unpacking libglib2.0-0t64:amd64 (2.82.2-3) over (2.82.1-0ubuntu1) ... 68s Preparing to unpack .../04-libgirepository-1.0-1_1.82.0-2_amd64.deb ... 68s Unpacking libgirepository-1.0-1:amd64 (1.82.0-2) over (1.80.1-4) ... 68s Preparing to unpack .../05-libglib2.0-data_2.82.2-3_all.deb ... 68s Unpacking libglib2.0-data (2.82.2-3) over (2.82.1-0ubuntu1) ... 68s Preparing to unpack .../06-python-apt-common_2.9.0ubuntu2_all.deb ... 68s Unpacking python-apt-common (2.9.0ubuntu2) over (2.9.0ubuntu1) ... 68s Preparing to unpack .../07-python3-apt_2.9.0ubuntu2_amd64.deb ... 68s Unpacking python3-apt (2.9.0ubuntu2) over (2.9.0ubuntu1) ... 68s Preparing to unpack .../08-vim-tiny_2%3a9.1.0861-1ubuntu1_amd64.deb ... 68s Unpacking vim-tiny (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 68s Preparing to unpack .../09-vim-common_2%3a9.1.0861-1ubuntu1_all.deb ... 68s Unpacking vim-common (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 68s Preparing to unpack .../10-xxd_2%3a9.1.0861-1ubuntu1_amd64.deb ... 68s Unpacking xxd (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ... 68s Preparing to unpack .../11-libplymouth5_24.004.60-2ubuntu4_amd64.deb ... 68s Unpacking libplymouth5:amd64 (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 68s Preparing to unpack .../12-plymouth-theme-ubuntu-text_24.004.60-2ubuntu4_amd64.deb ... 68s Unpacking plymouth-theme-ubuntu-text (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 69s Preparing to unpack .../13-plymouth_24.004.60-2ubuntu4_amd64.deb ... 69s Unpacking plymouth (24.004.60-2ubuntu4) over (24.004.60-1ubuntu11) ... 69s Preparing to unpack .../14-xz-utils_5.6.3-1_amd64.deb ... 69s Unpacking xz-utils (5.6.3-1) over (5.6.2-2) ... 69s Preparing to unpack .../15-bpftrace_0.21.2-2ubuntu3_amd64.deb ... 69s Unpacking bpftrace (0.21.2-2ubuntu3) over (0.21.2-2ubuntu2) ... 69s Preparing to unpack .../16-curl_8.11.0-1ubuntu2_amd64.deb ... 69s Unpacking curl (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 69s Preparing to unpack .../17-libcurl4t64_8.11.0-1ubuntu2_amd64.deb ... 69s Unpacking libcurl4t64:amd64 (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 69s Preparing to unpack .../18-dracut-install_105-2ubuntu2_amd64.deb ... 69s Unpacking dracut-install (105-2ubuntu2) over (105-1ubuntu1) ... 69s Preparing to unpack .../19-fwupd-signed_1.55+1.7-1_amd64.deb ... 69s Unpacking fwupd-signed (1.55+1.7-1) over (1.54+1.6-1build1) ... 69s Preparing to unpack .../20-libcurl3t64-gnutls_8.11.0-1ubuntu2_amd64.deb ... 69s Unpacking libcurl3t64-gnutls:amd64 (8.11.0-1ubuntu2) over (8.9.1-2ubuntu2) ... 69s Preparing to unpack .../21-libpolkit-agent-1-0_125-2ubuntu1_amd64.deb ... 69s Unpacking libpolkit-agent-1-0:amd64 (125-2ubuntu1) over (124-2ubuntu1) ... 69s Preparing to unpack .../22-libpolkit-gobject-1-0_125-2ubuntu1_amd64.deb ... 69s Unpacking libpolkit-gobject-1-0:amd64 (125-2ubuntu1) over (124-2ubuntu1) ... 69s Selecting previously unselected package libsgutils2-1.48:amd64. 69s Preparing to unpack .../23-libsgutils2-1.48_1.48-0ubuntu1_amd64.deb ... 69s Unpacking libsgutils2-1.48:amd64 (1.48-0ubuntu1) ... 69s Preparing to unpack .../24-linux-base_4.10.1ubuntu1_all.deb ... 69s Unpacking linux-base (4.10.1ubuntu1) over (4.5ubuntu9) ... 69s Preparing to unpack .../25-lto-disabled-list_54_all.deb ... 69s Unpacking lto-disabled-list (54) over (53) ... 69s Preparing to unpack .../26-lxd-installer_10_all.deb ... 69s Unpacking lxd-installer (10) over (9) ... 69s Preparing to unpack .../27-pinentry-curses_1.3.1-0ubuntu2_amd64.deb ... 69s Unpacking pinentry-curses (1.3.1-0ubuntu2) over (1.2.1-3ubuntu5) ... 69s Preparing to unpack .../28-python3-blinker_1.9.0-1_all.deb ... 69s Unpacking python3-blinker (1.9.0-1) over (1.8.2-1) ... 69s Preparing to unpack .../29-python3-rpds-py_0.21.0-2ubuntu1_amd64.deb ... 69s Unpacking python3-rpds-py (0.21.0-2ubuntu1) over (0.20.0-0ubuntu3) ... 69s Preparing to unpack .../30-python3-jsonschema-specifications_2023.12.1-2_all.deb ... 69s Unpacking python3-jsonschema-specifications (2023.12.1-2) over (2023.12.1-1ubuntu1) ... 69s Preparing to unpack .../31-sg3-utils_1.48-0ubuntu1_amd64.deb ... 69s Unpacking sg3-utils (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 70s Preparing to unpack .../32-sg3-utils-udev_1.48-0ubuntu1_all.deb ... 70s Unpacking sg3-utils-udev (1.48-0ubuntu1) over (1.46-3ubuntu5) ... 70s Preparing to unpack .../33-amd64-microcode_3.20240820.1ubuntu1_amd64.deb ... 70s Unpacking amd64-microcode (3.20240820.1ubuntu1) over (3.20240116.2+nmu1ubuntu1.1) ... 70s Preparing to unpack .../34-intel-microcode_3.20241112.1ubuntu2_amd64.deb ... 70s Unpacking intel-microcode (3.20241112.1ubuntu2) over (3.20241112.1ubuntu1) ... 70s Setting up pinentry-curses (1.3.1-0ubuntu2) ... 70s Setting up distro-info (1.12) ... 70s Setting up lto-disabled-list (54) ... 70s Setting up apt-utils (2.9.14ubuntu1) ... 70s Setting up linux-base (4.10.1ubuntu1) ... 70s Setting up init (1.67ubuntu1) ... 70s Setting up libcurl4t64:amd64 (8.11.0-1ubuntu2) ... 70s Setting up bpftrace (0.21.2-2ubuntu3) ... 70s Setting up openssh-client (1:9.9p1-3ubuntu2) ... 70s Setting up intel-microcode (3.20241112.1ubuntu2) ... 70s intel-microcode: microcode will be updated at next boot 70s Setting up python3-debconf (1.5.87ubuntu1) ... 70s Setting up libcurl3t64-gnutls:amd64 (8.11.0-1ubuntu2) ... 70s Setting up fwupd-signed (1.55+1.7-1) ... 70s Setting up libsgutils2-1.48:amd64 (1.48-0ubuntu1) ... 70s Setting up debconf-i18n (1.5.87ubuntu1) ... 70s Setting up amd64-microcode (3.20240820.1ubuntu1) ... 70s amd64-microcode: microcode will be updated at next boot 70s Setting up xxd (2:9.1.0861-1ubuntu1) ... 70s Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... 70s No schema files found: doing nothing. 70s Setting up libglib2.0-data (2.82.2-3) ... 70s Setting up vim-common (2:9.1.0861-1ubuntu1) ... 70s Setting up xz-utils (5.6.3-1) ... 70s Setting up gir1.2-glib-2.0:amd64 (2.82.2-3) ... 70s Setting up lxd-installer (10) ... 70s Setting up python3-rpds-py (0.21.0-2ubuntu1) ... 71s Setting up python-apt-common (2.9.0ubuntu2) ... 71s Setting up dracut-install (105-2ubuntu2) ... 71s Setting up libplymouth5:amd64 (24.004.60-2ubuntu4) ... 71s Setting up libgirepository-1.0-1:amd64 (1.82.0-2) ... 71s Setting up curl (8.11.0-1ubuntu2) ... 71s Setting up python3-jsonschema-specifications (2023.12.1-2) ... 71s Setting up libpolkit-gobject-1-0:amd64 (125-2ubuntu1) ... 71s Setting up sg3-utils (1.48-0ubuntu1) ... 71s Setting up python3-blinker (1.9.0-1) ... 71s Setting up openssh-sftp-server (1:9.9p1-3ubuntu2) ... 71s Setting up openssh-server (1:9.9p1-3ubuntu2) ... 71s Installing new version of config file /etc/ssh/moduli ... 71s Replacing config file /etc/ssh/sshd_config with new version 72s Setting up plymouth (24.004.60-2ubuntu4) ... 72s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 72s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 72s Setting up python3-apt (2.9.0ubuntu2) ... 73s Setting up vim-tiny (2:9.1.0861-1ubuntu1) ... 73s Setting up sg3-utils-udev (1.48-0ubuntu1) ... 73s update-initramfs: deferring update (trigger activated) 73s Setting up gir1.2-girepository-2.0:amd64 (1.82.0-2) ... 73s Setting up libpolkit-agent-1-0:amd64 (125-2ubuntu1) ... 73s Processing triggers for debianutils (5.21) ... 73s Processing triggers for install-info (7.1.1-1) ... 73s Processing triggers for initramfs-tools (0.142ubuntu35) ... 73s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 73s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 81s Processing triggers for libc-bin (2.40-1ubuntu3) ... 81s Processing triggers for ufw (0.36.2-8) ... 81s Processing triggers for man-db (2.13.0-1) ... 83s Setting up plymouth-theme-ubuntu-text (24.004.60-2ubuntu4) ... 83s Processing triggers for initramfs-tools (0.142ubuntu35) ... 83s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 83s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s The following packages will be REMOVED: 93s libsgutils2-1.46-2* 93s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 93s After this operation, 294 kB disk space will be freed. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75649 files and directories currently installed.) 93s Removing libsgutils2-1.46-2:amd64 (1.46-3ubuntu5) ... 93s Processing triggers for libc-bin (2.40-1ubuntu3) ... 93s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 93s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 93s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 93s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 94s Reading package lists... 94s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade... 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s autopkgtest [09:35:01]: rebooting testbed after setup commands that affected boot 99s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 111s autopkgtest [09:35:16]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 112s autopkgtest [09:35:17]: @@@@@@@@@@@@@@@@@@@@ apt-source imexam 114s Get:1 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (dsc) [2361 B] 114s Get:2 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (tar) [21.4 MB] 114s Get:3 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (diff) [7756 B] 114s gpgv: Signature made Tue Nov 28 09:16:30 2023 UTC 114s gpgv: using RSA key BAFC6C85F7CB143FEEB6FB157115AFD07710DCF7 114s gpgv: Can't check signature: No public key 114s dpkg-source: warning: cannot verify inline signature for ./imexam_0.9.1-6.dsc: no acceptable signature found 115s autopkgtest [09:35:20]: testing package imexam version 0.9.1-6 115s autopkgtest [09:35:20]: build not needed 116s autopkgtest [09:35:21]: test command1: preparing testbed 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 117s The following additional packages will be installed: 117s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx ipython3 117s libblas3 libdeflate0 liberfa1 libfontconfig1 libgfortran5 libgomp1 117s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 117s libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen 117s libjs-jquery-metadata libjs-jquery-tablesorter 117s libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc 117s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 117s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 117s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 libwebp7 libwebpdemux2 117s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 117s python3-appdirs python3-astropy python3-astropy-iers-data python3-asttokens 117s python3-brotli python3-contourpy python3-coverage python3-cycler 117s python3-dateutil python3-decorator python3-erfa python3-executing 117s python3-fonttools python3-fs python3-hypothesis python3-imexam 117s python3-iniconfig python3-ipython python3-jedi python3-kiwisolver 117s python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline 117s python3-mpmath python3-numpy python3-packaging python3-parso python3-pexpect 117s python3-pil python3-pil.imagetk python3-pluggy python3-ply 117s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 117s python3-pytest-arraydiff python3-pytest-astropy 117s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 117s python3-pytest-filter-subpackage python3-pytest-mock 117s python3-pytest-remotedata python3-scipy python3-six python3-sortedcontainers 117s python3-stack-data python3-sympy python3-tk python3-traitlets 117s python3-typeshed python3-tz python3-ufolib2 python3-unicodedata2 117s python3-wcwidth python3.12-tk python3.13 python3.13-minimal python3.13-tk 117s tk8.6-blt2.5 unicode-data x11-common 117s Suggested packages: 117s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libxml2-utils 117s python-astropy-doc python3-astropy-affiliated python3-bs4 python3-h5py 117s python3-pandas python-coverage-doc python-cycler-doc python-hypothesis-doc 117s python-imexam-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 117s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape librsvg2-common 117s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 117s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 117s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran 117s python-numpy-doc python3-dev python-pexpect-doc python-pil-doc 117s python-ply-doc python-pytest-mock-doc python-scipy-doc 117s python-sortedcontainers-doc texlive-fonts-extra python-sympy-doc tix 117s python3-tk-dbg python-traitlets-doc python3.13-venv python3.13-doc 117s binfmt-support 117s Recommended packages: 117s javascript-common libjs-jquery-datatables python3-click python3-ginga 117s | saods9 python3-ginga | xpa-tools python3-bs4 python3-cssselect 117s python3-html5lib python3-olefile g++ | c++-compiler isympy-common 117s The following NEW packages will be installed: 117s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 117s fonts-lyx ipython3 libblas3 libdeflate0 liberfa1 libfontconfig1 libgfortran5 117s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 117s libjpeg8 libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen 117s libjs-jquery-metadata libjs-jquery-tablesorter 117s libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc 117s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 117s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 117s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 libwebp7 libwebpdemux2 117s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 117s python3-appdirs python3-astropy python3-astropy-iers-data python3-asttokens 117s python3-brotli python3-contourpy python3-coverage python3-cycler 117s python3-dateutil python3-decorator python3-erfa python3-executing 117s python3-fonttools python3-fs python3-hypothesis python3-imexam 117s python3-iniconfig python3-ipython python3-jedi python3-kiwisolver 117s python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline 117s python3-mpmath python3-numpy python3-packaging python3-parso python3-pexpect 117s python3-pil python3-pil.imagetk python3-pluggy python3-ply 117s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 117s python3-pytest-arraydiff python3-pytest-astropy 117s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 117s python3-pytest-filter-subpackage python3-pytest-mock 117s python3-pytest-remotedata python3-scipy python3-six python3-sortedcontainers 117s python3-stack-data python3-sympy python3-tk python3-traitlets 117s python3-typeshed python3-tz python3-ufolib2 python3-unicodedata2 117s python3-wcwidth python3.12-tk python3.13 python3.13-minimal python3.13-tk 117s tk8.6-blt2.5 unicode-data x11-common 117s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 82.6 MB/82.6 MB of archives. 117s After this operation, 412 MB of additional disk space will be used. 117s Get:1 /tmp/autopkgtest.QjaKVd/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 118s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 118s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 118s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 118s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 118s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 118s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 118s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 118s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 118s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 118s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 118s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 118s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 118s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 118s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 118s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-parso all 0.8.4-1 [67.6 kB] 118s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 118s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB] 118s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 118s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 118s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 118s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-prompt-toolkit all 3.0.48-1 [256 kB] 118s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-asttokens all 2.4.1-2 [20.8 kB] 118s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-executing all 2.1.0-0.1 [24.4 kB] 118s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pure-eval all 0.2.3-1 [11.4 kB] 118s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB] 118s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ptyprocess all 0.7.0-6 [14.8 kB] 118s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pexpect all 4.9-3 [48.1 kB] 118s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipython all 8.29.0-1 [569 kB] 118s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 ipython3 all 8.29.0-1 [4938 B] 118s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 118s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 118s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 118s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 118s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 118s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 118s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 118s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 118s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 118s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 118s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 118s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 118s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 118s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 118s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 118s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 118s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 118s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 118s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 118s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 118s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 118s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 118s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 118s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 118s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 118s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 118s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libwcs8 amd64 8.4+ds-1 [310 kB] 118s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 118s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 118s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 118s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 118s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 118s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 118s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 118s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 118s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 118s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 118s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sortedcontainers all 2.4.0-2 [27.6 kB] 118s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hypothesis all 6.119.3-1 [329 kB] 118s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 118s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-arraydiff all 0.6.1-3 [10.2 kB] 118s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-astropy-header all 0.2.2-2 [8620 B] 118s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 118s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu3 [150 kB] 118s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 118s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 118s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-doctestplus all 1.2.1-2 [23.5 kB] 118s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-filter-subpackage all 0.2.0-1 [6094 B] 118s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-mock all 3.14.0-2 [11.7 kB] 118s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-remotedata all 0.4.1-1 [8650 B] 118s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-astropy all 0.11.0-1 [5902 B] 118s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ply all 3.11-7 [45.4 kB] 118s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-astropy-iers-data all 0.2024.07.22.00.34.13-1 [1198 kB] 118s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 liberfa1 amd64 2.0.1-1build1 [139 kB] 118s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-erfa amd64 2.0.1.5+ds-1 [321 kB] 118s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-astropy amd64 7.0.0-1 [4108 kB] 118s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 118s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2build1 [271 kB] 118s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 118s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 118s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 118s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 118s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1build1 [1834 kB] 119s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build5 [27.5 kB] 119s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5ubuntu1 [21.7 MB] 119s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 119s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 119s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 119s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 119s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 119s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.0-3 [1759 kB] 119s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 119s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu2 [580 kB] 119s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 119s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 119s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 119s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu2 [9568 B] 119s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 119s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu1 [4691 kB] 119s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-imexam amd64 0.9.1-6 [50.5 kB] 119s Fetched 82.6 MB in 2s (54.8 MB/s) 119s Selecting previously unselected package libpython3.13-minimal:amd64. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75644 files and directories currently installed.) 120s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 120s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 120s Selecting previously unselected package python3.13-minimal. 120s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 120s Unpacking python3.13-minimal (3.13.0-2) ... 120s Selecting previously unselected package libjs-jquery. 120s Preparing to unpack .../002-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 120s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 120s Selecting previously unselected package libjs-jquery-hotkeys. 120s Preparing to unpack .../003-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 120s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 120s Selecting previously unselected package libtcl8.6:amd64. 120s Preparing to unpack .../004-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 120s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 120s Selecting previously unselected package fonts-dejavu-mono. 120s Preparing to unpack .../005-fonts-dejavu-mono_2.37-8_all.deb ... 120s Unpacking fonts-dejavu-mono (2.37-8) ... 120s Selecting previously unselected package fonts-dejavu-core. 120s Preparing to unpack .../006-fonts-dejavu-core_2.37-8_all.deb ... 120s Unpacking fonts-dejavu-core (2.37-8) ... 120s Selecting previously unselected package fontconfig-config. 120s Preparing to unpack .../007-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 120s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 120s Selecting previously unselected package libfontconfig1:amd64. 120s Preparing to unpack .../008-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 120s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 120s Selecting previously unselected package libxrender1:amd64. 120s Preparing to unpack .../009-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 120s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 120s Selecting previously unselected package libxft2:amd64. 120s Preparing to unpack .../010-libxft2_2.3.6-1build1_amd64.deb ... 120s Unpacking libxft2:amd64 (2.3.6-1build1) ... 120s Selecting previously unselected package x11-common. 120s Preparing to unpack .../011-x11-common_1%3a7.7+23ubuntu3_all.deb ... 120s Unpacking x11-common (1:7.7+23ubuntu3) ... 120s Selecting previously unselected package libxss1:amd64. 120s Preparing to unpack .../012-libxss1_1%3a1.2.3-1build3_amd64.deb ... 120s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 120s Selecting previously unselected package libtk8.6:amd64. 120s Preparing to unpack .../013-libtk8.6_8.6.15-1_amd64.deb ... 120s Unpacking libtk8.6:amd64 (8.6.15-1) ... 120s Selecting previously unselected package tk8.6-blt2.5. 120s Preparing to unpack .../014-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 120s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 121s Selecting previously unselected package blt. 121s Preparing to unpack .../015-blt_2.5.3+dfsg-7build1_amd64.deb ... 121s Unpacking blt (2.5.3+dfsg-7build1) ... 121s Selecting previously unselected package fonts-lyx. 121s Preparing to unpack .../016-fonts-lyx_2.4.2.1-1_all.deb ... 121s Unpacking fonts-lyx (2.4.2.1-1) ... 121s Selecting previously unselected package python3-decorator. 121s Preparing to unpack .../017-python3-decorator_5.1.1-5_all.deb ... 121s Unpacking python3-decorator (5.1.1-5) ... 121s Selecting previously unselected package python3-parso. 121s Preparing to unpack .../018-python3-parso_0.8.4-1_all.deb ... 121s Unpacking python3-parso (0.8.4-1) ... 121s Selecting previously unselected package python3-typeshed. 121s Preparing to unpack .../019-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 121s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 121s Selecting previously unselected package python3-jedi. 121s Preparing to unpack .../020-python3-jedi_0.19.1+ds1-1_all.deb ... 121s Unpacking python3-jedi (0.19.1+ds1-1) ... 121s Selecting previously unselected package python3-traitlets. 121s Preparing to unpack .../021-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 121s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 121s Selecting previously unselected package python3-matplotlib-inline. 121s Preparing to unpack .../022-python3-matplotlib-inline_0.1.6-2_all.deb ... 121s Unpacking python3-matplotlib-inline (0.1.6-2) ... 121s Selecting previously unselected package python3-wcwidth. 122s Preparing to unpack .../023-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 122s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 122s Selecting previously unselected package python3-prompt-toolkit. 122s Preparing to unpack .../024-python3-prompt-toolkit_3.0.48-1_all.deb ... 122s Unpacking python3-prompt-toolkit (3.0.48-1) ... 122s Selecting previously unselected package python3-asttokens. 122s Preparing to unpack .../025-python3-asttokens_2.4.1-2_all.deb ... 122s Unpacking python3-asttokens (2.4.1-2) ... 122s Selecting previously unselected package python3-executing. 122s Preparing to unpack .../026-python3-executing_2.1.0-0.1_all.deb ... 122s Unpacking python3-executing (2.1.0-0.1) ... 122s Selecting previously unselected package python3-pure-eval. 122s Preparing to unpack .../027-python3-pure-eval_0.2.3-1_all.deb ... 122s Unpacking python3-pure-eval (0.2.3-1) ... 122s Selecting previously unselected package python3-stack-data. 122s Preparing to unpack .../028-python3-stack-data_0.6.3-1_all.deb ... 122s Unpacking python3-stack-data (0.6.3-1) ... 122s Selecting previously unselected package python3-ptyprocess. 122s Preparing to unpack .../029-python3-ptyprocess_0.7.0-6_all.deb ... 122s Unpacking python3-ptyprocess (0.7.0-6) ... 122s Selecting previously unselected package python3-pexpect. 122s Preparing to unpack .../030-python3-pexpect_4.9-3_all.deb ... 122s Unpacking python3-pexpect (4.9-3) ... 122s Selecting previously unselected package python3-ipython. 122s Preparing to unpack .../031-python3-ipython_8.29.0-1_all.deb ... 122s Unpacking python3-ipython (8.29.0-1) ... 122s Selecting previously unselected package ipython3. 122s Preparing to unpack .../032-ipython3_8.29.0-1_all.deb ... 122s Unpacking ipython3 (8.29.0-1) ... 122s Selecting previously unselected package libblas3:amd64. 122s Preparing to unpack .../033-libblas3_3.12.0-4_amd64.deb ... 122s Unpacking libblas3:amd64 (3.12.0-4) ... 122s Selecting previously unselected package libdeflate0:amd64. 122s Preparing to unpack .../034-libdeflate0_1.22-1_amd64.deb ... 122s Unpacking libdeflate0:amd64 (1.22-1) ... 122s Selecting previously unselected package libgfortran5:amd64. 122s Preparing to unpack .../035-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 122s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 122s Selecting previously unselected package libgomp1:amd64. 122s Preparing to unpack .../036-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 122s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 122s Selecting previously unselected package libgraphite2-3:amd64. 122s Preparing to unpack .../037-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 122s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 122s Selecting previously unselected package libharfbuzz0b:amd64. 122s Preparing to unpack .../038-libharfbuzz0b_10.0.1-1_amd64.deb ... 122s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 122s Selecting previously unselected package libimagequant0:amd64. 122s Preparing to unpack .../039-libimagequant0_2.18.0-1build1_amd64.deb ... 122s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 122s Selecting previously unselected package libjpeg-turbo8:amd64. 122s Preparing to unpack .../040-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 122s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 122s Selecting previously unselected package libjpeg8:amd64. 122s Preparing to unpack .../041-libjpeg8_8c-2ubuntu11_amd64.deb ... 122s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 122s Selecting previously unselected package libjs-jquery-metadata. 122s Preparing to unpack .../042-libjs-jquery-metadata_12-4_all.deb ... 122s Unpacking libjs-jquery-metadata (12-4) ... 122s Selecting previously unselected package libjs-jquery-tablesorter. 122s Preparing to unpack .../043-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 122s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 122s Selecting previously unselected package libjs-jquery-throttle-debounce. 122s Preparing to unpack .../044-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 122s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 122s Selecting previously unselected package libjs-jquery-ui. 122s Preparing to unpack .../045-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 122s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 122s Selecting previously unselected package libjs-underscore. 122s Preparing to unpack .../046-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 122s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 122s Selecting previously unselected package libjs-sphinxdoc. 122s Preparing to unpack .../047-libjs-sphinxdoc_7.4.7-4_all.deb ... 122s Unpacking libjs-sphinxdoc (7.4.7-4) ... 122s Selecting previously unselected package liblapack3:amd64. 122s Preparing to unpack .../048-liblapack3_3.12.0-4_amd64.deb ... 122s Unpacking liblapack3:amd64 (3.12.0-4) ... 122s Selecting previously unselected package liblbfgsb0:amd64. 122s Preparing to unpack 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python3-unicodedata2 (15.1.0+ds-1build2) ... 127s Setting up fonts-lyx (2.4.2.1-1) ... 127s Setting up python3-ply (3.11-7) ... 128s Setting up x11-common (1:7.7+23ubuntu3) ... 128s Setting up libdeflate0:amd64 (1.22-1) ... 128s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 128s Setting up python3-sortedcontainers (2.4.0-2) ... 128s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 128s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 128s Setting up python3-astropy-iers-data (0.2024.07.22.00.34.13-1) ... 128s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 128s Setting up python3-tz (2024.1-2) ... 128s Setting up unicode-data (15.1.0-1) ... 128s Setting up python3-six (1.16.0-7) ... 128s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 128s Setting up python3-decorator (5.1.1-5) ... 128s Setting up libblas3:amd64 (3.12.0-4) ... 129s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 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[09:36:02]: test command1: cd $AUTOPKGTEST_TMP && MPLBACKEND=Agg python3 -m pytest --pyargs imexam 157s autopkgtest [09:36:02]: test command1: [----------------------- 159s ============================= test session starts ============================== 159s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 159s rootdir: /tmp/autopkgtest.QjaKVd/autopkgtest_tmp 159s plugins: cov-5.0.0, mock-3.14.0, filter-subpackage-0.2.0, hypothesis-6.119.3, doctestplus-1.2.1, arraydiff-0.6.1, astropy-0.11.0, remotedata-0.4.1, astropy-header-0.2.2, typeguard-4.4.1 159s collected 21 items 159s 160s tests/test_imexamine.py ..sFFxFFs [ 42%] 160s tests/test_util.py ............ [100%] 160s 160s =================================== FAILURES =================================== 160s ________________________________ test_line_fit _________________________________ 160s 160s def test_line_fit(): 160s """Fit a Gaussian1D line to the data.""" 160s plots = Imexamine() 160s in_amp = 3. 160s in_mean = 50. 160s in_stddev = 2. 160s in_const = 20. 160s 160s # Set all the lines to be Gaussians 160s line_gauss = in_const + in_amp * np.exp(-0.5 * ((xx - in_mean) / in_stddev)**2) 160s plots.set_data(line_gauss) 160s > fit = plots.line_fit(50, 50, form='Gaussian1D', genplot=False) 160s 160s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:86: 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 160s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 160s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 160s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 160s results = fit(model, xx, yy, data) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 160s return func(self, model, x, y, z=z, **kwargs) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 160s init_values, fitparams, cov_x = self._run_fitter( 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 160s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 160s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 160s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s 160s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 160s model = 160s weights = 1.0 160s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 160s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 160s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 160s 26., 27., 28., 29.]]) 160s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 160s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 160s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 160s 29., 29., 29., 29.]]) 160s z = array([[20. , 20. , 20. , 20.00000005, 20.00000081, 160s 20.00001118, 20.0001202 , 20.00100639...2699, 20.00656247, 20.00100639, 20.0001202 , 160s 20.00001118, 20.00000081, 20.00000005, 20. , 20. ]]) 160s fit_param_indices = None 160s 160s @staticmethod 160s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 160s """ 160s Wraps the method calculating the Jacobian of the function to account 160s for model constraints. 160s `scipy.optimize.leastsq` expects the function derivative to have the 160s above signature (parlist, (argtuple)). In order to accommodate model 160s constraints, instead of using p directly, we set the parameter list in 160s this function. 160s """ 160s if weights is None: 160s weights = 1.0 160s 160s if model.has_fixed or model.has_tied: 160s # update the parameters with the current values from the fitter 160s fitter_to_model_params(model, params) 160s if z is None: 160s full = np.array(model.fit_deriv(x, *model.parameters)) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s else: 160s full = np.array( 160s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 160s ) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s 160s pars = [getattr(model, name) for name in model.param_names] 160s fixed = [par.fixed for par in pars] 160s tied = [par.tied for par in pars] 160s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 160s fix_and_tie = np.logical_or(fixed, tied) 160s ind = np.logical_not(fix_and_tie) 160s 160s if not model.col_fit_deriv: 160s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 160s else: 160s residues = full_deriv[np.nonzero(ind)] 160s 160s return [np.ravel(_) for _ in residues] 160s else: 160s if z is None: 160s fit_deriv = np.array(model.fit_deriv(x, *params)) 160s try: 160s output = np.array( 160s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 160s ) 160s if output.shape != fit_deriv.shape: 160s output = np.array( 160s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 160s ) 160s return output 160s except ValueError: 160s return np.array( 160s [ 160s np.ravel(_) 160s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 160s ] 160s ).transpose() 160s else: 160s if not model.col_fit_deriv: 160s return [ 160s np.ravel(_) 160s for _ in ( 160s np.ravel(weights) 160s * np.array(model.fit_deriv(x, y, *params)).T 160s ).T 160s ] 160s return [ 160s np.ravel(_) 160s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 160s ] 160s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 160s 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 160s ----------------------------- Captured stdout call ----------------------------- 160s using model: 160s Name: Gaussian1D 160s N_inputs: 1 160s N_outputs: 1 160s Fittable parameters: ('amplitude', 'mean', 'stddev') 160s ------------------------------ Captured log call ------------------------------- 160s INFO imexam.util:imexamine.py:749 using model: 160s Name: Gaussian1D 160s N_inputs: 1 160s N_outputs: 1 160s Fittable parameters: ('amplitude', 'mean', 'stddev') 160s _______________________________ test_column_fit ________________________________ 160s 160s def test_column_fit(): 160s """Fit a Gaussian1D column to the data.""" 160s plots = Imexamine() 160s in_amp = 3. 160s in_mean = 50. 160s in_stddev = 2. 160s in_const = 20. 160s # Set all the columns to be Gaussians 160s col_gauss = in_const + in_amp * np.exp(-0.5 * ((yy - in_mean) / in_stddev)**2) 160s plots.set_data(col_gauss) 160s > fit = plots.column_fit(50, 50, form='Gaussian1D', genplot=False) 160s 160s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:104: 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:917: in column_fit 160s result = self.line_fit(x, y, data=data, form=form, 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 160s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 160s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 160s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 160s results = fit(model, xx, yy, data) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 160s return func(self, model, x, y, z=z, **kwargs) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 160s init_values, fitparams, cov_x = self._run_fitter( 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 160s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 160s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 160s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s 160s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 160s model = 160s weights = 1.0 160s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 160s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 160s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 160s 26., 27., 28., 29.]]) 160s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 160s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 160s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 160s 29., 29., 29., 29.]]) 160s z = array([[20. , 20. , 20. , 20. , 20. , 160s 20. , 20. , 20. ... , 20. , 20. , 20. , 160s 20. , 20. , 20. , 20. , 20. ]]) 160s fit_param_indices = None 160s 160s @staticmethod 160s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 160s """ 160s Wraps the method calculating the Jacobian of the function to account 160s for model constraints. 160s `scipy.optimize.leastsq` expects the function derivative to have the 160s above signature (parlist, (argtuple)). In order to accommodate model 160s constraints, instead of using p directly, we set the parameter list in 160s this function. 160s """ 160s if weights is None: 160s weights = 1.0 160s 160s if model.has_fixed or model.has_tied: 160s # update the parameters with the current values from the fitter 160s fitter_to_model_params(model, params) 160s if z is None: 160s full = np.array(model.fit_deriv(x, *model.parameters)) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s else: 160s full = np.array( 160s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 160s ) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s 160s pars = [getattr(model, name) for name in model.param_names] 160s fixed = [par.fixed for par in pars] 160s tied = [par.tied for par in pars] 160s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 160s fix_and_tie = np.logical_or(fixed, tied) 160s ind = np.logical_not(fix_and_tie) 160s 160s if not model.col_fit_deriv: 160s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 160s else: 160s residues = full_deriv[np.nonzero(ind)] 160s 160s return [np.ravel(_) for _ in residues] 160s else: 160s if z is None: 160s fit_deriv = np.array(model.fit_deriv(x, *params)) 160s try: 160s output = np.array( 160s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 160s ) 160s if output.shape != fit_deriv.shape: 160s output = np.array( 160s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 160s ) 160s return output 160s except ValueError: 160s return np.array( 160s [ 160s np.ravel(_) 160s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 160s ] 160s ).transpose() 160s else: 160s if not model.col_fit_deriv: 160s return [ 160s np.ravel(_) 160s for _ in ( 160s np.ravel(weights) 160s * np.array(model.fit_deriv(x, y, *params)).T 160s ).T 160s ] 160s return [ 160s np.ravel(_) 160s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 160s ] 160s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 160s 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 160s ----------------------------- Captured stdout call ----------------------------- 160s using model: 160s Name: Gaussian1D 160s N_inputs: 1 160s N_outputs: 1 160s Fittable parameters: ('amplitude', 'mean', 'stddev') 160s ------------------------------ Captured log call ------------------------------- 160s INFO imexam.util:imexamine.py:749 using model: 160s Name: Gaussian1D 160s N_inputs: 1 160s N_outputs: 1 160s Fittable parameters: ('amplitude', 'mean', 'stddev') 160s _____________________________ test_radial_profile ______________________________ 160s 160s def test_radial_profile(): 160s """Test the radial profile function 160s No background subtraction 160s individual pixel results used 160s """ 160s from astropy.convolution import Gaussian2DKernel 160s data = Gaussian2DKernel(1.5, x_size=25, y_size=25) 160s xx, yy = np.meshgrid(np.arange(25), np.arange(25)) 160s x0, y0 = np.where(data.array == data.array.max()) 160s 160s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 160s rad_in = rad_in.ravel() 160s flux_in = data.array.ravel() 160s 160s order = np.argsort(rad_in) 160s rad_in = rad_in[order] 160s flux_in = flux_in[order] 160s 160s plots = Imexamine() 160s plots.set_data(data.array) 160s 160s plots.radial_profile_pars['pixels'][0] = True 160s plots.radial_profile_pars['background'][0] = False 160s plots.radial_profile_pars['clip'][0] = False 160s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 160s 160s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:160: 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 160s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 160s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 160s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 160s results = fit(model, xx, yy, data) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 160s return func(self, model, x, y, z=z, **kwargs) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 160s init_values, fitparams, cov_x = self._run_fitter( 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 160s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 160s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 160s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s 160s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 160s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 160s model = 160s weights = 1.0 160s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., 7.]]) 160s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 160s [1., 1., 1., 1., 1., 1., 1., 1.], 160s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 160s [6., 6., 6., 6., 6., 6., 6., 6.], 160s [7., 7., 7., 7., 7., 7., 7., 7.]]) 160s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 160s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 160s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 160s fit_param_indices = None 160s 160s @staticmethod 160s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 160s """ 160s Wraps the method calculating the Jacobian of the function to account 160s for model constraints. 160s `scipy.optimize.leastsq` expects the function derivative to have the 160s above signature (parlist, (argtuple)). In order to accommodate model 160s constraints, instead of using p directly, we set the parameter list in 160s this function. 160s """ 160s if weights is None: 160s weights = 1.0 160s 160s if model.has_fixed or model.has_tied: 160s # update the parameters with the current values from the fitter 160s fitter_to_model_params(model, params) 160s if z is None: 160s full = np.array(model.fit_deriv(x, *model.parameters)) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s else: 160s full = np.array( 160s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 160s ) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s 160s pars = [getattr(model, name) for name in model.param_names] 160s fixed = [par.fixed for par in pars] 160s tied = [par.tied for par in pars] 160s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 160s fix_and_tie = np.logical_or(fixed, tied) 160s ind = np.logical_not(fix_and_tie) 160s 160s if not model.col_fit_deriv: 160s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 160s else: 160s residues = full_deriv[np.nonzero(ind)] 160s 160s return [np.ravel(_) for _ in residues] 160s else: 160s if z is None: 160s fit_deriv = np.array(model.fit_deriv(x, *params)) 160s try: 160s output = np.array( 160s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 160s ) 160s if output.shape != fit_deriv.shape: 160s output = np.array( 160s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 160s ) 160s return output 160s except ValueError: 160s return np.array( 160s [ 160s np.ravel(_) 160s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 160s ] 160s ).transpose() 160s else: 160s if not model.col_fit_deriv: 160s return [ 160s np.ravel(_) 160s for _ in ( 160s np.ravel(weights) 160s * np.array(model.fit_deriv(x, y, *params)).T 160s ).T 160s ] 160s return [ 160s np.ravel(_) 160s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 160s ] 160s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 160s 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 160s ________________________ test_radial_profile_cumulative ________________________ 160s 160s def test_radial_profile_cumulative(): 160s """Test the radial profile function 160s without background subtraction 160s with each pixel integer binned 160s """ 160s from astropy.convolution import Gaussian2DKernel 160s ksize = 25 160s data = Gaussian2DKernel(1.5, x_size=ksize, y_size=ksize) 160s xx, yy = np.meshgrid(np.arange(ksize), np.arange(ksize)) 160s x0, y0 = np.where(data.array == data.array.max()) 160s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 160s 160s rad_in = rad_in.ravel() 160s flux_in = data.array.ravel() 160s 160s indices = np.argsort(rad_in) 160s rad_in = rad_in[indices] 160s flux_in = flux_in[indices] 160s 160s # now bin the radflux like we expect 160s rad_in = rad_in.astype(int) 160s flux_in = np.bincount(rad_in, flux_in) / np.bincount(rad_in) 160s rad_in = np.arange(len(flux_in)) 160s assert (data.array[x0, y0] == flux_in[0]) 160s 160s # check the binned results 160s plots = Imexamine() 160s plots.set_data(data.array) 160s plots.radial_profile_pars['pixels'][0] = False 160s plots.radial_profile_pars['background'][0] = False 160s plots.radial_profile_pars['clip'][0] = False 160s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 160s 160s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:206: 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 160s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 160s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 160s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 160s results = fit(model, xx, yy, data) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 160s return func(self, model, x, y, z=z, **kwargs) 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 160s init_values, fitparams, cov_x = self._run_fitter( 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 160s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 160s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 160s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 160s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 160s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 160s 160s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 160s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 160s model = 160s weights = 1.0 160s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., 7.], 160s [0., 1., 2., 3., 4., 5., 6., 7.]]) 160s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 160s [1., 1., 1., 1., 1., 1., 1., 1.], 160s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 160s [6., 6., 6., 6., 6., 6., 6., 6.], 160s [7., 7., 7., 7., 7., 7., 7., 7.]]) 160s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 160s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 160s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 160s fit_param_indices = None 160s 160s @staticmethod 160s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 160s """ 160s Wraps the method calculating the Jacobian of the function to account 160s for model constraints. 160s `scipy.optimize.leastsq` expects the function derivative to have the 160s above signature (parlist, (argtuple)). In order to accommodate model 160s constraints, instead of using p directly, we set the parameter list in 160s this function. 160s """ 160s if weights is None: 160s weights = 1.0 160s 160s if model.has_fixed or model.has_tied: 160s # update the parameters with the current values from the fitter 160s fitter_to_model_params(model, params) 160s if z is None: 160s full = np.array(model.fit_deriv(x, *model.parameters)) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s else: 160s full = np.array( 160s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 160s ) 160s if not model.col_fit_deriv: 160s full_deriv = np.ravel(weights) * full.T 160s else: 160s full_deriv = np.ravel(weights) * full 160s 160s pars = [getattr(model, name) for name in model.param_names] 160s fixed = [par.fixed for par in pars] 160s tied = [par.tied for par in pars] 160s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 160s fix_and_tie = np.logical_or(fixed, tied) 160s ind = np.logical_not(fix_and_tie) 160s 160s if not model.col_fit_deriv: 160s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 160s else: 160s residues = full_deriv[np.nonzero(ind)] 160s 160s return [np.ravel(_) for _ in residues] 160s else: 160s if z is None: 160s fit_deriv = np.array(model.fit_deriv(x, *params)) 160s try: 160s output = np.array( 160s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 160s ) 160s if output.shape != fit_deriv.shape: 160s output = np.array( 160s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 160s ) 160s return output 160s except ValueError: 160s return np.array( 160s [ 160s np.ravel(_) 160s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 160s ] 160s ).transpose() 160s else: 160s if not model.col_fit_deriv: 160s return [ 160s np.ravel(_) 160s for _ in ( 160s np.ravel(weights) 160s * np.array(model.fit_deriv(x, y, *params)).T 160s ).T 160s ] 160s return [ 160s np.ravel(_) 160s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 160s ] 160s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 160s 160s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 160s =============================== warnings summary =============================== 160s ../../../usr/lib/python3/dist-packages/imexam/__init__.py:12 160s /usr/lib/python3/dist-packages/imexam/__init__.py:12: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 160s from pkg_resources import get_distribution, DistributionNotFound 160s 160s tests/test_imexamine.py::test_radial_profile 160s tests/test_imexamine.py::test_radial_profile_cumulative 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1097: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 160s xx = int(x) 160s 160s tests/test_imexamine.py::test_radial_profile 160s tests/test_imexamine.py::test_radial_profile_cumulative 160s /usr/lib/python3/dist-packages/imexam/imexamine.py:1098: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 160s yy = int(y) 160s 160s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 160s =========================== short test summary info ============================ 160s FAILED tests/test_imexamine.py::test_line_fit - ValueError: setting an array ... 160s FAILED tests/test_imexamine.py::test_column_fit - ValueError: setting an arra... 160s FAILED tests/test_imexamine.py::test_radial_profile - ValueError: setting an ... 160s FAILED tests/test_imexamine.py::test_radial_profile_cumulative - ValueError: ... 160s ======== 4 failed, 14 passed, 2 skipped, 1 xfailed, 5 warnings in 2.65s ======== 161s autopkgtest [09:36:06]: test command1: -----------------------] 161s command1 FAIL non-zero exit status 1 161s autopkgtest [09:36:06]: test command1: - - - - - - - - - - results - - - - - - - - - - 161s autopkgtest [09:36:06]: @@@@@@@@@@@@@@@@@@@@ summary 161s command1 FAIL non-zero exit status 1 172s virt: nova [W] Skipping flock for amd64 172s virt: Creating nova instance adt-plucky-amd64-imexam-20241126-093324-juju-7f2275-prod-proposed-migration-environment-2-3cb79fed-c7ec-49e7-96cc-903a3ae8f25a from image adt/ubuntu-plucky-amd64-server-20241119.img (UUID 2f2a410e-3f09-433d-912b-264888c6382a)...