0s autopkgtest [08:56:47]: starting date and time: 2024-11-13 08:56:47+0000 0s autopkgtest [08:56:47]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [08:56:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0ckgdl4z/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade hdmf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-29.secgroup --name adt-plucky-amd64-hdmf-20241113-083313-juju-7f2275-prod-proposed-migration-environment-2-021c7a88-538e-4eec-936a-856b23410d73 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 54s autopkgtest [08:57:41]: testbed dpkg architecture: amd64 54s autopkgtest [08:57:41]: testbed apt version: 2.9.8 54s autopkgtest [08:57:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 54s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 54s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 54s Fetched 2173 kB in 0s (6888 kB/s) 54s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s Calculating upgrade... 57s The following NEW packages will be installed: 57s python3.13-gdbm 57s The following packages will be upgraded: 57s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 57s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 253 kB of archives. 57s After this operation, 147 kB of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 57s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 57s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 57s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 57s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 57s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 57s Fetched 253 kB in 0s (8096 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 58s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 58s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 58s Setting up python3-minimal (3.12.7-1) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 58s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 58s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 58s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 58s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 58s Selecting previously unselected package python3.13-gdbm. 58s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 58s Unpacking python3.13-gdbm (3.13.0-2) ... 58s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 58s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 58s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 58s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 58s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 58s Setting up python3.13-gdbm (3.13.0-2) ... 58s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 58s Setting up python3 (3.12.7-1) ... 58s Setting up python3-gdbm:amd64 (3.12.7-1) ... 58s Processing triggers for man-db (2.12.1-3) ... 59s Processing triggers for libc-bin (2.40-1ubuntu3) ... 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 60s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 60s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 60s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 62s Reading package lists... 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s Calculating upgrade... 63s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [08:57:51]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 64s autopkgtest [08:57:51]: @@@@@@@@@@@@@@@@@@@@ apt-source hdmf 65s Get:1 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (dsc) [2399 B] 65s Get:2 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (tar) [15.8 MB] 65s Get:3 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (diff) [6460 B] 65s gpgv: Signature made Sat Nov 2 15:04:50 2024 UTC 65s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 65s gpgv: issuer "emollier@debian.org" 65s gpgv: Can't check signature: No public key 65s dpkg-source: warning: cannot verify inline signature for ./hdmf_3.14.5-1.dsc: no acceptable signature found 66s autopkgtest [08:57:53]: testing package hdmf version 3.14.5-1 66s autopkgtest [08:57:53]: build not needed 66s autopkgtest [08:57:53]: test run-unit-test: preparing testbed 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 68s Starting pkgProblemResolver with broken count: 0 68s Starting 2 pkgProblemResolver with broken count: 0 68s Done 68s The following additional packages will be installed: 68s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 68s liblbfgsb0 liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 68s python3-all python3-dateutil python3-decorator python3-h5py 68s python3-h5py-serial python3-hdmf python3-numpy python3-pandas 68s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 68s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 68s Suggested packages: 68s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 68s python-pandas-doc python3-statsmodels python-scipy-doc python3.13-venv 68s python3.13-doc binfmt-support 68s Recommended packages: 68s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 68s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 68s python3-numba g++ | c++-compiler python3-pil 68s The following NEW packages will be installed: 68s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 68s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libpython3.13-minimal 68s libpython3.13-stdlib libsz2 python3-all python3-dateutil python3-decorator 68s python3-h5py python3-h5py-serial python3-hdmf python3-numpy python3-pandas 68s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 68s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 68s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 43.7 MB/43.7 MB of archives. 68s After this operation, 191 MB of additional disk space will be used. 68s Get:1 /tmp/autopkgtest.ndm1xY/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B] 68s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 68s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 68s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 68s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 68s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 68s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 68s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 69s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 69s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 69s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 69s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 69s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 69s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 69s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 69s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 69s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 69s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 69s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 69s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 69s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 69s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [138 kB] 69s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 69s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdmf all 3.14.5-1 [235 kB] 69s Fetched 43.7 MB in 0s (95.2 MB/s) 69s Selecting previously unselected package libpython3.13-minimal:amd64. 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 69s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 69s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 69s Selecting previously unselected package python3.13-minimal. 69s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 69s Unpacking python3.13-minimal (3.13.0-2) ... 69s Selecting previously unselected package libaec0:amd64. 69s Preparing to unpack .../02-libaec0_1.1.3-1_amd64.deb ... 69s Unpacking libaec0:amd64 (1.1.3-1) ... 69s Selecting previously unselected package libblas3:amd64. 69s Preparing to unpack .../03-libblas3_3.12.0-3build2_amd64.deb ... 69s Unpacking libblas3:amd64 (3.12.0-3build2) ... 69s Selecting previously unselected package libgfortran5:amd64. 69s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libsz2:amd64. 69s Preparing to unpack .../05-libsz2_1.1.3-1_amd64.deb ... 69s Unpacking libsz2:amd64 (1.1.3-1) ... 69s Selecting previously unselected package libhdf5-103-1t64:amd64. 69s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 69s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 70s Selecting previously unselected package libhdf5-hl-100t64:amd64. 70s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 70s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 70s Selecting previously unselected package liblapack3:amd64. 70s Preparing to unpack .../08-liblapack3_3.12.0-3build2_amd64.deb ... 70s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 70s Selecting previously unselected package liblbfgsb0:amd64. 70s Preparing to unpack .../09-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 70s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 70s Selecting previously unselected package liblzf1:amd64. 70s Preparing to unpack .../10-liblzf1_3.6-4_amd64.deb ... 70s Unpacking liblzf1:amd64 (3.6-4) ... 70s Selecting previously unselected package libpython3.13-stdlib:amd64. 70s Preparing to unpack .../11-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 70s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 70s Selecting previously unselected package python3.13. 70s Preparing to unpack .../12-python3.13_3.13.0-2_amd64.deb ... 70s Unpacking python3.13 (3.13.0-2) ... 70s Selecting previously unselected package python3-all. 70s Preparing to unpack .../13-python3-all_3.12.7-1_amd64.deb ... 70s Unpacking python3-all (3.12.7-1) ... 70s Selecting previously unselected package python3-six. 70s Preparing to unpack .../14-python3-six_1.16.0-7_all.deb ... 70s Unpacking python3-six (1.16.0-7) ... 70s Selecting previously unselected package python3-dateutil. 70s Preparing to unpack .../15-python3-dateutil_2.9.0-2_all.deb ... 70s Unpacking python3-dateutil (2.9.0-2) ... 70s Selecting previously unselected package python3-decorator. 70s Preparing to unpack .../16-python3-decorator_5.1.1-5_all.deb ... 70s Unpacking python3-decorator (5.1.1-5) ... 70s Selecting previously unselected package python3-numpy. 70s Preparing to unpack .../17-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 70s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 70s Selecting previously unselected package python3-h5py-serial. 70s Preparing to unpack .../18-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 70s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 70s Selecting previously unselected package python3-h5py. 70s Preparing to unpack .../19-python3-h5py_3.11.0-5ubuntu1_all.deb ... 70s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 70s Selecting previously unselected package python3-tz. 70s Preparing to unpack .../20-python3-tz_2024.1-2_all.deb ... 70s Unpacking python3-tz (2024.1-2) ... 70s Selecting previously unselected package python3-pandas-lib:amd64. 70s Preparing to unpack .../21-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 70s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 70s Selecting previously unselected package python3-pandas. 70s Preparing to unpack .../22-python3-pandas_2.2.3+dfsg-5_all.deb ... 70s Unpacking python3-pandas (2.2.3+dfsg-5) ... 71s Selecting previously unselected package python3-scipy. 71s Preparing to unpack .../23-python3-scipy_1.13.1-5_amd64.deb ... 71s Unpacking python3-scipy (1.13.1-5) ... 71s Selecting previously unselected package python3-ruamel.yaml.clib:amd64. 71s Preparing to unpack .../24-python3-ruamel.yaml.clib_0.2.8+ds-2_amd64.deb ... 71s Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2) ... 71s Selecting previously unselected package python3-ruamel.yaml. 71s Preparing to unpack .../25-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 71s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 71s Selecting previously unselected package python3-hdmf. 71s Preparing to unpack .../26-python3-hdmf_3.14.5-1_all.deb ... 71s Unpacking python3-hdmf (3.14.5-1) ... 71s Selecting previously unselected package autopkgtest-satdep. 71s Preparing to unpack .../27-1-autopkgtest-satdep.deb ... 71s Unpacking autopkgtest-satdep (0) ... 71s Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2) ... 71s Setting up libaec0:amd64 (1.1.3-1) ... 71s Setting up python3-tz (2024.1-2) ... 72s Setting up python3-six (1.16.0-7) ... 72s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 72s Setting up python3-decorator (5.1.1-5) ... 72s Setting up libblas3:amd64 (3.12.0-3build2) ... 72s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 72s Setting up liblzf1:amd64 (3.6-4) ... 72s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 72s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 72s Setting up python3.13-minimal (3.13.0-2) ... 73s Setting up python3-dateutil (2.9.0-2) ... 73s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 73s Setting up libsz2:amd64 (1.1.3-1) ... 73s Setting up liblapack3:amd64 (3.12.0-3build2) ... 73s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 73s Setting up python3.13 (3.13.0-2) ... 74s Setting up python3-all (3.12.7-1) ... 74s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 78s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 78s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 78s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 78s Setting up python3-scipy (1.13.1-5) ... 84s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 84s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 84s Setting up python3-pandas (2.2.3+dfsg-5) ... 92s Setting up python3-h5py (3.11.0-5ubuntu1) ... 93s Setting up python3-hdmf (3.14.5-1) ... 93s Setting up autopkgtest-satdep (0) ... 93s Processing triggers for systemd (256.5-2ubuntu4) ... 93s Processing triggers for man-db (2.12.1-3) ... 93s Processing triggers for libc-bin (2.40-1ubuntu3) ... 96s (Reading database ... 80762 files and directories currently installed.) 96s Removing autopkgtest-satdep (0) ... 96s autopkgtest [08:58:23]: test run-unit-test: [----------------------- 96s Testing with python3.13 in /tmp/autopkgtest.ndm1xY/autopkgtest_tmp: 97s tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) ... ERROR 97s tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) ... ERROR 97s tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) ... ERROR 97s tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) ... ERROR 97s tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) ... ERROR 97s tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) ... ERROR 97s tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) ... ERROR 97s tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) ... ERROR 97s tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) ... ERROR 97s tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) ... ERROR 97s tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) ... ERROR 97s tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) ... ERROR 97s tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) ... ERROR 97s tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) ... ERROR 97s tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) ... ERROR 97s tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) ... ERROR 97s tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) ... ERROR 97s tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) ... ERROR 97s tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) ... ERROR 97s tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) ... ERROR 97s tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) ... ERROR 97s tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) ... ERROR 97s tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) ... ERROR 97s tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) ... ERROR 97s tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) ... ERROR 97s tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) ... ERROR 97s tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) ... ERROR 97s tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) ... ERROR 97s tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) ... ERROR 97s tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) ... ERROR 97s tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) ... ERROR 97s tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) ... ERROR 97s tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) ... ERROR 97s tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) ... ERROR 97s tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) ... ERROR 97s tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) ... ERROR 97s tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) ... ERROR 97s tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) ... ERROR 97s tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) ... ERROR 97s tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) ... ERROR 97s tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) ... ERROR 97s tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) ... ERROR 97s tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) ... ERROR 97s tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) ... ERROR 97s tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) ... ERROR 97s tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) ... ERROR 97s tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) ... ERROR 97s 97s ====================================================================== 97s ERROR: tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.back_compat_tests.test_1_1_0 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/back_compat_tests/test_1_1_0.py", line 4, in 97s from hdmf.backends.hdf5.h5tools import HDF5IO 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_datetime 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_datetime.py", line 1, in 97s from hdmf.utils import docval, getargs 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_quantity 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_quantity.py", line 1, in 97s from hdmf import Container, Data 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.test_builder 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/test_builder.py", line 1, in 97s from hdmf.build import GroupBuilder, DatasetBuilder, LinkBuilder, ReferenceBuilder, RegionBuilder 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.test_classgenerator 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/test_classgenerator.py", line 1, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.test_convert_dtype 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/test_convert_dtype.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.test_io_manager 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/test_io_manager.py", line 3, in 97s from hdmf.build import GroupBuilder, DatasetBuilder, ObjectMapper, BuildManager, TypeMap, ContainerConfigurationError 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/test_io_map.py", line 1, in 97s from hdmf.utils import StrDataset, docval, getargs 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map_data 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 97s from . import _debian_h5py_serial as _h5py 97s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 97s from . import _errors 97s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/build_tests/test_io_map_data.py", line 3, in 97s import h5py 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 97s from . import _debian_h5py_mpi as _h5py 97s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_alignedtable 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_alignedtable.py", line 1, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_common 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_common.py", line 1, in 97s from hdmf import Data, Container 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_common_io 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 97s from . import _debian_h5py_serial as _h5py 97s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 97s from . import _errors 97s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_common_io.py", line 1, in 97s from h5py import File 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 97s from . import _debian_h5py_mpi as _h5py 97s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_generate_table 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_generate_table.py", line 1, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_linkedtables 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_linkedtables.py", line 6, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_multi 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_multi.py", line 1, in 97s from hdmf.common import SimpleMultiContainer 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_resources 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_resources.py", line 1, in 97s import pandas as pd 97s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 97s raise ImportError( 97s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 97s ) 97s ImportError: Unable to import required dependencies: 97s numpy: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_sparse 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_sparse.py", line 1, in 97s from hdmf.common import CSRMatrix 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.common.test_table 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 97s from . import _debian_h5py_serial as _h5py 97s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 97s from . import _errors 97s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/common/test_table.py", line 2, in 97s import h5py 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 97s from . import _debian_h5py_mpi as _h5py 97s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_attribute_spec 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_attribute_spec.py", line 3, in 97s from hdmf.spec import AttributeSpec, RefSpec 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_dataset_spec 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_dataset_spec.py", line 3, in 97s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, DtypeSpec, RefSpec 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_dtype_spec 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_dtype_spec.py", line 1, in 97s from hdmf.spec import DtypeSpec, DtypeHelper, RefSpec 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_group_spec 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_group_spec.py", line 3, in 97s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, LinkSpec 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_link_spec 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_link_spec.py", line 3, in 97s from hdmf.spec import GroupSpec, LinkSpec 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_load_namespace 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_load_namespace.py", line 7, in 97s from hdmf.common import get_type_map 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_ref_spec 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_ref_spec.py", line 3, in 97s from hdmf.spec import RefSpec 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_catalog 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_spec_catalog.py", line 3, in 97s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, SpecCatalog 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_write 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/spec_tests/test_spec_write.py", line 4, in 97s from hdmf.spec.namespace import SpecNamespace, NamespaceCatalog 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_container 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_container.py", line 1, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_io_hdf5 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_io_hdf5.py", line 5, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_io_hdf5_h5tools 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 97s from . import _debian_h5py_serial as _h5py 97s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 97s from . import _errors 97s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_io_hdf5_h5tools.py", line 12, in 97s import h5py 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 97s from . import _debian_h5py_mpi as _h5py 97s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_io_hdf5_streaming 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 97s from . import _debian_h5py_serial as _h5py 97s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 97s from . import _errors 97s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_io_hdf5_streaming.py", line 4, in 97s import h5py 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 97s from . import _debian_h5py_mpi as _h5py 97s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_multicontainerinterface 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_multicontainerinterface.py", line 3, in 97s from hdmf.container import Container, Data, MultiContainerInterface 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_query 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_query.py", line 4, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_table 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_table.py", line 1, in 97s import pandas as pd 97s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 97s raise ImportError( 97s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 97s ) 97s ImportError: Unable to import required dependencies: 97s numpy: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.test_term_set 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/test_term_set.py", line 2, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunk 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunk.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunkIterator 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunkIterator.py", line 1, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataIO 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_core_DataIO.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_core_GenericDataChunkIterator 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_core_GenericDataChunkIterator.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_core_ShapeValidator 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_core_ShapeValidator.py", line 1, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_data_utils 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_data_utils.py", line 1, in 97s from hdmf.data_utils import append_data 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_docval 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_docval.py", line 1, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_labelleddict 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_labelleddict.py", line 1, in 97s from hdmf.testing import TestCase 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.utils_test.test_utils 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 97s from . import _debian_h5py_serial as _h5py 97s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 97s from . import _errors 97s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/utils_test/test_utils.py", line 3, in 97s import h5py 97s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 97s from . import _debian_h5py_mpi as _h5py 97s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.validator_tests.test_errors 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/validator_tests/test_errors.py", line 3, in 97s from hdmf.validate.errors import Error 97s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 97s from . import query 97s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ====================================================================== 97s ERROR: tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) 97s ---------------------------------------------------------------------- 97s ImportError: Failed to import test module: tests.unit.validator_tests.test_validate 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 97s from . import multiarray 97s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 97s from . import overrides 97s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 97s from numpy.core._multiarray_umath import ( 97s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 97s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 97s 97s During handling of the above exception, another exception occurred: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 97s from numpy.__config__ import show as show_config 97s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 97s from numpy.core._multiarray_umath import ( 97s ...<3 lines>... 97s ) 97s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 97s raise ImportError(msg) 97s ImportError: 97s 97s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 97s 97s Importing the numpy C-extensions failed. This error can happen for 97s many reasons, often due to issues with your setup or how NumPy was 97s installed. 97s 97s We have compiled some common reasons and troubleshooting tips at: 97s 97s https://numpy.org/devdocs/user/troubleshooting-importerror.html 97s 97s Please note and check the following: 97s 97s * The Python version is: Python3.13 from "/usr/bin/python3.13" 97s * The NumPy version is: "1.26.4" 97s 97s and make sure that they are the versions you expect. 97s Please carefully study the documentation linked above for further help. 97s 97s Original error was: No module named 'numpy.core._multiarray_umath' 97s 97s 97s The above exception was the direct cause of the following exception: 97s 97s Traceback (most recent call last): 97s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 97s module = self._get_module_from_name(name) 97s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 97s __import__(name) 97s ~~~~~~~~~~^^^^^^ 97s File "/tmp/autopkgtest.ndm1xY/autopkgtest_tmp/tests/unit/validator_tests/test_validate.py", line 5, in 97s import numpy as np 97s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 97s raise ImportError(msg) from e 97s ImportError: Error importing numpy: you should not try to import numpy from 97s its source directory; please exit the numpy source tree, and relaunch 97s your python interpreter from there. 97s 97s 97s ---------------------------------------------------------------------- 97s Ran 47 tests in 0.004s 97s 97s FAILED (errors=47) 97s autopkgtest [08:58:24]: test run-unit-test: -----------------------] 97s autopkgtest [08:58:24]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 97s run-unit-test FAIL non-zero exit status 1 97s autopkgtest [08:58:24]: test autodep8-python3: preparing testbed 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Starting pkgProblemResolver with broken count: 0 98s Starting 2 pkgProblemResolver with broken count: 0 98s Done 99s The following NEW packages will be installed: 99s autopkgtest-satdep 99s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 0 B/712 B of archives. 99s After this operation, 0 B of additional disk space will be used. 99s Get:1 /tmp/autopkgtest.ndm1xY/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B] 99s Selecting previously unselected package autopkgtest-satdep. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80762 files and directories currently installed.) 99s Preparing to unpack .../2-autopkgtest-satdep.deb ... 99s Unpacking autopkgtest-satdep (0) ... 99s Setting up autopkgtest-satdep (0) ... 101s (Reading database ... 80762 files and directories currently installed.) 101s Removing autopkgtest-satdep (0) ... 102s autopkgtest [08:58:29]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import hdmf; print(hdmf)" ; done 102s autopkgtest [08:58:29]: test autodep8-python3: [----------------------- 102s Testing with python3.13: 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "", line 1, in 102s import hdmf; print(hdmf) 102s ^^^^^^^^^^^ 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s autopkgtest [08:58:29]: test autodep8-python3: -----------------------] 102s autopkgtest [08:58:29]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 102s autodep8-python3 FAIL non-zero exit status 1 102s autopkgtest [08:58:29]: @@@@@@@@@@@@@@@@@@@@ summary 102s run-unit-test FAIL non-zero exit status 1 102s autodep8-python3 FAIL non-zero exit status 1 120s virt: nova [W] Skipping flock for amd64 120s virt: Creating nova instance adt-plucky-amd64-hdmf-20241113-083313-juju-7f2275-prod-proposed-migration-environment-2-021c7a88-538e-4eec-936a-856b23410d73 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...