0s autopkgtest [08:23:29]: starting date and time: 2024-11-13 08:23:29+0000 0s autopkgtest [08:23:29]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [08:23:29]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.romc64aq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade fast5 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-27.secgroup --name adt-plucky-amd64-fast5-20241113-082329-juju-7f2275-prod-proposed-migration-environment-20-1449742e-c359-48eb-9c77-dabff544b4e2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 76s autopkgtest [08:24:45]: testbed dpkg architecture: amd64 76s autopkgtest [08:24:45]: testbed apt version: 2.9.8 76s autopkgtest [08:24:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 77s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 78s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 78s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 78s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 78s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 78s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 78s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 78s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 78s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 78s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 78s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 78s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 78s Fetched 2173 kB in 1s (1812 kB/s) 78s Reading package lists... 80s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 81s The following NEW packages will be installed: 81s python3.13-gdbm 81s The following packages will be upgraded: 81s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 81s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 253 kB of archives. 81s After this operation, 147 kB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 81s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 81s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 81s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 81s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 81s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 82s Fetched 253 kB in 0s (589 kB/s) 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 82s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 82s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 82s Setting up python3-minimal (3.12.7-1) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 82s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 82s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 82s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 82s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 82s Selecting previously unselected package python3.13-gdbm. 82s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 82s Unpacking python3.13-gdbm (3.13.0-2) ... 82s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 82s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 82s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 82s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 82s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 82s Setting up python3.13-gdbm (3.13.0-2) ... 82s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 82s Setting up python3 (3.12.7-1) ... 83s Setting up python3-gdbm:amd64 (3.12.7-1) ... 83s Processing triggers for man-db (2.12.1-3) ... 83s Processing triggers for libc-bin (2.40-1ubuntu3) ... 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 84s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 84s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 86s Reading package lists... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s autopkgtest [08:24:58]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 89s autopkgtest [08:24:58]: @@@@@@@@@@@@@@@@@@@@ apt-source fast5 92s Get:1 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-8 (dsc) [2339 B] 92s Get:2 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-8 (tar) [93.6 kB] 92s Get:3 http://ftpmaster.internal/ubuntu plucky/universe fast5 0.6.5-8 (diff) [5668 B] 92s gpgv: Signature made Wed Aug 21 15:10:31 2024 UTC 92s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 92s gpgv: issuer "emollier@debian.org" 92s gpgv: Can't check signature: No public key 92s dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-8.dsc: no acceptable signature found 92s autopkgtest [08:25:01]: testing package fast5 version 0.6.5-8 92s autopkgtest [08:25:01]: build not needed 93s autopkgtest [08:25:02]: test command1: preparing testbed 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s The following additional packages will be installed: 95s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 95s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 95s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-helpers libaec-dev libaec0 95s libasan8 libbrotli-dev libcc1-0 libcurl4-openssl-dev libevent-2.1-7t64 95s libfast5-dev libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl 95s libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgomp1 95s libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 95s libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 95s libidn2-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 95s libjpeg8 libjpeg8-dev liblsan0 libmpc3 libnghttp2-dev libp11-kit-dev 95s libpkgconf3 libpsl-dev libquadmath0 librtmp-dev libssh2-1-dev libssl-dev 95s libstdc++-14-dev libsz2 libtasn1-6-dev libtsan2 libubsan1 libunbound8 95s libzstd-dev nettle-dev pkgconf pkgconf-bin zlib1g-dev 95s Suggested packages: 95s cpp-doc gcc-14-locales cpp-14-doc g++-multilib g++-14-multilib gcc-14-doc 95s gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc 95s gcc-14-multilib gdb-x86-64-linux-gnu libcurl4-doc libidn-dev libkrb5-dev 95s libldap2-dev gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin 95s gnutls-doc libhdf5-doc libnghttp2-doc p11-kit-doc libssl-doc 95s libstdc++-14-doc 95s Recommended packages: 95s libtasn1-doc 95s The following NEW packages will be installed: 95s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu 95s cpp-x86-64-linux-gnu g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu 95s gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-helpers 95s libaec-dev libaec0 libasan8 libbrotli-dev libcc1-0 libcurl4-openssl-dev 95s libevent-2.1-7t64 libfast5-dev libgcc-14-dev libgfortran5 libgmp-dev 95s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 95s libgomp1 libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev 95s libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 95s libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev libisl23 libitm1 95s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblsan0 95s libmpc3 libnghttp2-dev libp11-kit-dev libpkgconf3 libpsl-dev libquadmath0 95s librtmp-dev libssh2-1-dev libssl-dev libstdc++-14-dev libsz2 libtasn1-6-dev 95s libtsan2 libubsan1 libunbound8 libzstd-dev nettle-dev pkgconf pkgconf-bin 95s zlib1g-dev 95s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 80.2 MB/80.2 MB of archives. 95s After this operation, 282 MB of additional disk space will be used. 95s Get:1 /tmp/autopkgtest.vTcYKB/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [720 B] 95s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 95s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 95s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 96s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 96s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 96s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 96s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 96s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 96s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 96s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 96s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 96s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 96s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 96s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 96s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 96s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 96s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 96s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 96s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 96s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 96s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 97s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 97s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 97s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 97s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 97s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-helpers amd64 1.10.10+repack-4ubuntu3 [16.2 kB] 97s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 97s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libbrotli-dev amd64 1.1.0-2build2 [353 kB] 97s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 97s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 97s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 97s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 97s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 97s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 97s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2ubuntu7 [10.0 kB] 97s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2ubuntu7 [341 kB] 97s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 97s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.20.0-1ubuntu2.1 [447 kB] 97s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.6-2ubuntu1 [24.0 kB] 97s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.6-2ubuntu1 [24.2 kB] 97s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu1 [22.7 kB] 97s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.19.0-3build1 [90.5 kB] 97s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10-1 [1172 kB] 97s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.6-2ubuntu1 [1069 kB] 97s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 97s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 97s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.3.1-2ubuntu2 [2686 kB] 97s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 97s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [371 kB] 97s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libcurl4-openssl-dev amd64 8.9.1-2ubuntu2 [483 kB] 97s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 97s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 97s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 97s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-4ubuntu3 [84.1 kB] 97s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 97s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-4ubuntu3 [31.3 kB] 97s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-4ubuntu3 [124 kB] 97s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-4ubuntu3 [11.2 kB] 97s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 97s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu2 [295 kB] 97s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 97s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 97s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 97s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 97s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-dev amd64 1.10.10+repack-4ubuntu3 [2784 kB] 97s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfast5-dev all 0.6.5-8 [50.3 kB] 98s Fetched 80.2 MB in 3s (30.6 MB/s) 98s Selecting previously unselected package libisl23:amd64. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 98s Preparing to unpack .../00-libisl23_0.27-1_amd64.deb ... 98s Unpacking libisl23:amd64 (0.27-1) ... 98s Selecting previously unselected package libmpc3:amd64. 98s Preparing to unpack .../01-libmpc3_1.3.1-1build2_amd64.deb ... 98s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 98s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 98s Preparing to unpack .../02-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package cpp-14. 98s Preparing to unpack .../03-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package cpp-x86-64-linux-gnu. 98s Preparing to unpack .../04-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 98s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 98s Selecting previously unselected package cpp. 98s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 98s Unpacking cpp (4:14.1.0-2ubuntu1) ... 98s Selecting previously unselected package libcc1-0:amd64. 98s Preparing to unpack .../06-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libgomp1:amd64. 98s Preparing to unpack .../07-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libgomp1:amd64 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.../18-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package gcc. 99s Preparing to unpack .../19-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking gcc (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package libstdc++-14-dev:amd64. 99s Preparing to unpack .../20-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package g++-14-x86-64-linux-gnu. 99s Preparing to unpack .../21-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package g++-14. 99s Preparing to unpack .../22-g++-14_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking g++-14 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package g++-x86-64-linux-gnu. 99s Preparing to unpack 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(1.1.0-2build2) ... 99s Selecting previously unselected package libidn2-dev:amd64. 100s Preparing to unpack .../29-libidn2-dev_2.3.7-2build2_amd64.deb ... 100s Unpacking libidn2-dev:amd64 (2.3.7-2build2) ... 100s Selecting previously unselected package libpkgconf3:amd64. 100s Preparing to unpack .../30-libpkgconf3_1.8.1-4_amd64.deb ... 100s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 100s Selecting previously unselected package pkgconf-bin. 100s Preparing to unpack .../31-pkgconf-bin_1.8.1-4_amd64.deb ... 100s Unpacking pkgconf-bin (1.8.1-4) ... 100s Selecting previously unselected package pkgconf:amd64. 100s Preparing to unpack .../32-pkgconf_1.8.1-4_amd64.deb ... 100s Unpacking pkgconf:amd64 (1.8.1-4) ... 100s Selecting previously unselected package libnghttp2-dev:amd64. 100s Preparing to unpack .../33-libnghttp2-dev_1.64.0-1_amd64.deb ... 100s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 100s Selecting previously unselected package libpsl-dev:amd64. 100s Preparing to unpack .../34-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 100s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 100s Selecting previously unselected package libgmpxx4ldbl:amd64. 100s Preparing to unpack .../35-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_amd64.deb ... 100s Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 100s Selecting previously unselected package libgmp-dev:amd64. 100s Preparing to unpack .../36-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_amd64.deb ... 100s Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 100s Selecting previously unselected package libevent-2.1-7t64:amd64. 100s Preparing to unpack .../37-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 100s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 100s Selecting previously unselected package libunbound8:amd64. 100s Preparing to unpack .../38-libunbound8_1.20.0-1ubuntu2.1_amd64.deb ... 100s Unpacking libunbound8:amd64 (1.20.0-1ubuntu2.1) ... 100s Selecting previously unselected package libgnutls-dane0t64:amd64. 100s Preparing to unpack .../39-libgnutls-dane0t64_3.8.6-2ubuntu1_amd64.deb ... 100s Unpacking libgnutls-dane0t64:amd64 (3.8.6-2ubuntu1) ... 100s Selecting previously unselected package libgnutls-openssl27t64:amd64. 100s Preparing to unpack .../40-libgnutls-openssl27t64_3.8.6-2ubuntu1_amd64.deb ... 100s Unpacking libgnutls-openssl27t64:amd64 (3.8.6-2ubuntu1) ... 100s Selecting previously unselected package libp11-kit-dev:amd64. 100s Preparing to unpack .../41-libp11-kit-dev_0.25.5-2ubuntu1_amd64.deb ... 100s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu1) ... 100s Selecting previously unselected package libtasn1-6-dev:amd64. 100s Preparing to unpack .../42-libtasn1-6-dev_4.19.0-3build1_amd64.deb ... 100s Unpacking libtasn1-6-dev:amd64 (4.19.0-3build1) ... 100s Selecting previously unselected package nettle-dev:amd64. 100s Preparing to unpack .../43-nettle-dev_3.10-1_amd64.deb ... 100s Unpacking nettle-dev:amd64 (3.10-1) ... 100s Selecting previously unselected package libgnutls28-dev:amd64. 100s Preparing to unpack .../44-libgnutls28-dev_3.8.6-2ubuntu1_amd64.deb ... 100s Unpacking libgnutls28-dev:amd64 (3.8.6-2ubuntu1) ... 100s Selecting previously unselected package zlib1g-dev:amd64. 100s Preparing to unpack .../45-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 100s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 100s Selecting previously unselected package librtmp-dev:amd64. 100s Preparing to unpack .../46-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 100s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 100s Selecting previously unselected package libssl-dev:amd64. 100s Preparing to unpack .../47-libssl-dev_3.3.1-2ubuntu2_amd64.deb ... 100s Unpacking libssl-dev:amd64 (3.3.1-2ubuntu2) ... 100s Selecting previously unselected package libssh2-1-dev:amd64. 100s Preparing to unpack .../48-libssh2-1-dev_1.11.1-1_amd64.deb ... 100s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 100s Selecting previously unselected package libzstd-dev:amd64. 100s Preparing to unpack .../49-libzstd-dev_1.5.6+dfsg-1_amd64.deb ... 100s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-1) ... 100s Selecting previously unselected package libcurl4-openssl-dev:amd64. 100s Preparing to unpack .../50-libcurl4-openssl-dev_8.9.1-2ubuntu2_amd64.deb ... 100s Unpacking libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu2) ... 100s Selecting previously unselected package libsz2:amd64. 100s Preparing to unpack .../51-libsz2_1.1.3-1_amd64.deb ... 100s Unpacking libsz2:amd64 (1.1.3-1) ... 100s Selecting previously unselected package libhdf5-103-1t64:amd64. 100s Preparing to unpack .../52-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libgfortran5:amd64. 100s Preparing to unpack .../53-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package libhdf5-fortran-102t64:amd64. 100s Preparing to unpack .../54-libhdf5-fortran-102t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-fortran-102t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-hl-100t64:amd64. 100s Preparing to unpack .../55-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-hl-fortran-100t64:amd64. 100s Preparing to unpack .../56-libhdf5-hl-fortran-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package libhdf5-cpp-103-1t64:amd64. 100s Preparing to unpack .../57-libhdf5-cpp-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 100s Unpacking libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 100s Selecting previously unselected package 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hdf5-helpers (1.10.10+repack-4ubuntu3) ... 101s Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 101s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libaec0:amd64 (1.1.3-1) ... 101s Setting up libpsl-dev:amd64 (0.21.2-1.1build1) ... 101s Setting up libunbound8:amd64 (1.20.0-1ubuntu2.1) ... 101s Setting up libpkgconf3:amd64 (1.8.1-4) ... 101s Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 101s Setting up libgnutls-dane0t64:amd64 (3.8.6-2ubuntu1) ... 101s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libssl-dev:amd64 (3.3.1-2ubuntu2) ... 101s Setting up libmpc3:amd64 (1.3.1-1build2) ... 101s Setting up pkgconf-bin (1.8.1-4) ... 101s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 101s Setting up libidn2-dev:amd64 (2.3.7-2build2) ... 101s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 101s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 101s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libisl23:amd64 (0.27-1) ... 101s Setting up libtasn1-6-dev:amd64 (4.19.0-3build1) ... 101s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libbrotli-dev:amd64 (1.1.0-2build2) ... 101s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libp11-kit-dev:amd64 (0.25.5-2ubuntu1) ... 101s Setting up libsz2:amd64 (1.1.3-1) ... 101s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 101s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ... 101s Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 101s Setting up nettle-dev:amd64 (3.10-1) ... 101s Setting up libaec-dev:amd64 (1.1.3-1) ... 101s Setting up pkgconf:amd64 (1.8.1-4) ... 101s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 101s Setting up libssh2-1-dev:amd64 (1.11.1-1) ... 101s Setting up cpp-14 (14.2.0-8ubuntu1) ... 101s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 101s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 101s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 101s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 101s Setting up libgnutls28-dev:amd64 (3.8.6-2ubuntu1) ... 101s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 101s Setting up libnghttp2-dev:amd64 (1.64.0-1) ... 101s Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 101s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 101s Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-4ubuntu3) ... 101s Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 101s Setting up cpp (4:14.1.0-2ubuntu1) ... 101s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 101s Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 101s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 101s Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 101s Setting up gcc-14 (14.2.0-8ubuntu1) ... 101s Setting up libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu2) ... 101s Setting up libhdf5-dev (1.10.10+repack-4ubuntu3) ... 101s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 101s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 101s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 101s Setting up g++-14 (14.2.0-8ubuntu1) ... 101s Setting up gcc (4:14.1.0-2ubuntu1) ... 101s Setting up libfast5-dev (0.6.5-8) ... 101s Setting up g++ (4:14.1.0-2ubuntu1) ... 101s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 101s Setting up build-essential (12.10ubuntu1) ... 101s Setting up autopkgtest-satdep (0) ... 101s Processing triggers for man-db (2.12.1-3) ... 102s Processing triggers for install-info (7.1.1-1) ... 102s Processing triggers for libc-bin (2.40-1ubuntu3) ... 105s (Reading database ... 77950 files and directories currently installed.) 105s Removing autopkgtest-satdep (0) ... 105s autopkgtest [08:25:14]: test command1: cp /usr/share/doc/libfast5-dev/examples/* $AUTOPKGTEST_TMP && cd $AUTOPKGTEST_TMP && make FAST5_DIR=/usr/include HDF5_INCLUDE_DIR=/usr/include/hdf5/serial HDF5_LIB_DIR=/usr/lib/$(gcc -print-multiarch)/hdf5/serial 105s autopkgtest [08:25:14]: test command1: [----------------------- 106s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5ls f5ls.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 111s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5ls-full f5ls-full.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 116s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 119s g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /usr/include -o f5-mod f5-mod.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl 123s autopkgtest [08:25:32]: test command1: -----------------------] 124s autopkgtest [08:25:33]: test command1: - - - - - - - - - - results - - - - - - - - - - 124s command1 PASS 124s autopkgtest [08:25:33]: test command2: preparing testbed 415s autopkgtest [08:30:24]: testbed dpkg architecture: amd64 415s autopkgtest [08:30:24]: testbed apt version: 2.9.8 415s autopkgtest [08:30:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 416s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 416s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 417s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 417s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 417s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 417s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 417s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 417s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 417s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 417s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 417s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 417s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 418s Fetched 2173 kB in 1s (1527 kB/s) 418s Reading package lists... 420s Reading package lists... 420s Building dependency tree... 420s Reading state information... 420s Calculating upgrade... 421s The following NEW packages will be installed: 421s python3.13-gdbm 421s The following packages will be upgraded: 421s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 421s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 421s Need to get 253 kB of archives. 421s After this operation, 147 kB of additional disk space will be used. 421s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 421s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 421s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 421s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 421s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 421s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 421s Fetched 253 kB in 0s (605 kB/s) 422s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 422s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 422s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 422s Setting up python3-minimal (3.12.7-1) ... 422s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 422s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 422s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 422s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 422s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 422s Selecting previously unselected package python3.13-gdbm. 422s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 422s Unpacking python3.13-gdbm (3.13.0-2) ... 422s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 422s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 422s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 422s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 422s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 422s Setting up python3.13-gdbm (3.13.0-2) ... 422s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 422s Setting up python3 (3.12.7-1) ... 422s Setting up python3-gdbm:amd64 (3.12.7-1) ... 422s Processing triggers for man-db (2.12.1-3) ... 423s Processing triggers for libc-bin (2.40-1ubuntu3) ... 423s Reading package lists... 423s Building dependency tree... 423s Reading state information... 423s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 424s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 424s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 424s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 424s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 425s Reading package lists... 425s Reading package lists... 425s Building dependency tree... 425s Reading state information... 425s Calculating upgrade... 425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s Reading package lists... 426s Building dependency tree... 426s Reading state information... 426s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 430s Reading package lists... 430s Building dependency tree... 430s Reading state information... 430s Starting pkgProblemResolver with broken count: 0 430s Starting 2 pkgProblemResolver with broken count: 0 430s Done 430s The following additional packages will be installed: 430s libaec0 libhdf5-103-1t64 libsz2 python3-fast5 430s The following NEW packages will be installed: 430s autopkgtest-satdep libaec0 libhdf5-103-1t64 libsz2 python3-fast5 430s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 430s Need to get 1596 kB/1596 kB of archives. 430s After this operation, 4884 kB of additional disk space will be used. 430s Get:1 /tmp/autopkgtest.vTcYKB/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [712 B] 430s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 431s Get:3 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 431s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 431s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fast5 amd64 0.6.5-8 [288 kB] 432s Fetched 1596 kB in 1s (1459 kB/s) 432s Selecting previously unselected package libaec0:amd64. 432s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 432s Preparing to unpack .../libaec0_1.1.3-1_amd64.deb ... 432s Unpacking libaec0:amd64 (1.1.3-1) ... 432s Selecting previously unselected package libsz2:amd64. 432s Preparing to unpack .../libsz2_1.1.3-1_amd64.deb ... 432s Unpacking libsz2:amd64 (1.1.3-1) ... 432s Selecting previously unselected package libhdf5-103-1t64:amd64. 432s Preparing to unpack .../libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 432s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 432s Selecting previously unselected package python3-fast5:amd64. 432s Preparing to unpack .../python3-fast5_0.6.5-8_amd64.deb ... 432s Unpacking python3-fast5:amd64 (0.6.5-8) ... 432s Selecting previously unselected package autopkgtest-satdep. 432s Preparing to unpack .../2-autopkgtest-satdep.deb ... 432s Unpacking autopkgtest-satdep (0) ... 432s Setting up libaec0:amd64 (1.1.3-1) ... 432s Setting up libsz2:amd64 (1.1.3-1) ... 432s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 432s Setting up python3-fast5:amd64 (0.6.5-8) ... 432s Setting up autopkgtest-satdep (0) ... 432s Processing triggers for libc-bin (2.40-1ubuntu3) ... 434s (Reading database ... 75579 files and directories currently installed.) 434s Removing autopkgtest-satdep (0) ... 436s autopkgtest [08:30:45]: test command2: python3 -c "import fast5" 436s autopkgtest [08:30:45]: test command2: [----------------------- 436s autopkgtest [08:30:45]: test command2: -----------------------] 437s command2 PASS 437s autopkgtest [08:30:46]: test command2: - - - - - - - - - - results - - - - - - - - - - 437s autopkgtest [08:30:46]: @@@@@@@@@@@@@@@@@@@@ summary 437s command1 PASS 437s command2 PASS 442s nova [W] Skipping flock for amd64 442s Creating nova instance adt-plucky-amd64-fast5-20241113-082329-juju-7f2275-prod-proposed-migration-environment-20-1449742e-c359-48eb-9c77-dabff544b4e2 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)... 442s nova [W] Skipping flock for amd64 442s Creating nova instance adt-plucky-amd64-fast5-20241113-082329-juju-7f2275-prod-proposed-migration-environment-20-1449742e-c359-48eb-9c77-dabff544b4e2 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...