0s autopkgtest [11:05:04]: starting date and time: 2024-11-15 11:05:04+0000 0s autopkgtest [11:05:04]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [11:05:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._r2yzmkz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade esda --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-2.secgroup --name adt-plucky-amd64-esda-20241115-110504-juju-7f2275-prod-proposed-migration-environment-2-dd27ff71-d344-4125-8f46-16b8c5bf075b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 42s autopkgtest [11:05:46]: testbed dpkg architecture: amd64 43s autopkgtest [11:05:47]: testbed apt version: 2.9.8 43s autopkgtest [11:05:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 43s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.5 kB] 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1056 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [176 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 44s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 44s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [297 kB] 44s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [833 kB] 44s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 44s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 44s Fetched 2704 kB in 1s (3283 kB/s) 44s Reading package lists... 46s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Calculating upgrade... 47s The following packages will be upgraded: 47s firmware-sof-signed grub-common grub-pc grub-pc-bin grub2-common libcap-ng0 47s libexpat1 lxd-installer man-db pastebinit python3-systemd xfsprogs 47s 12 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 47s Need to get 13.6 MB of archives. 47s After this operation, 477 kB of additional disk space will be used. 47s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 48s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 48s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 48s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 grub2-common amd64 2.12-5ubuntu7 [672 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc amd64 2.12-5ubuntu7 [137 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc-bin amd64 2.12-5ubuntu7 [1127 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-common amd64 2.12-5ubuntu7 [2110 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 48s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 48s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 48s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 48s Preconfiguring packages ... 48s Fetched 13.6 MB in 1s (12.0 MB/s) 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 49s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 49s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 49s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 49s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 49s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 49s Preparing to unpack .../0-libexpat1_2.6.4-1_amd64.deb ... 49s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 49s Preparing to unpack .../1-man-db_2.13.0-1_amd64.deb ... 49s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 49s Preparing to unpack .../2-grub2-common_2.12-5ubuntu7_amd64.deb ... 49s Unpacking grub2-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 49s Preparing to unpack .../3-grub-pc_2.12-5ubuntu7_amd64.deb ... 49s Unpacking grub-pc (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 49s Preparing to unpack .../4-grub-pc-bin_2.12-5ubuntu7_amd64.deb ... 49s Unpacking grub-pc-bin (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 49s Preparing to unpack .../5-grub-common_2.12-5ubuntu7_amd64.deb ... 49s Unpacking grub-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 49s Preparing to unpack .../6-lxd-installer_9_all.deb ... 49s Unpacking lxd-installer (9) over (8) ... 49s Preparing to unpack .../7-pastebinit_1.7.1-1_all.deb ... 49s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 49s Preparing to unpack .../8-python3-systemd_235-1build5_amd64.deb ... 50s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 50s Preparing to unpack .../9-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 50s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 50s Setting up libexpat1:amd64 (2.6.4-1) ... 50s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 50s Setting up pastebinit (1.7.1-1) ... 50s Setting up man-db (2.13.0-1) ... 50s Updating database of manual pages ... 51s man-db.service is a disabled or a static unit not running, not starting it. 51s Setting up grub-common (2.12-5ubuntu7) ... 52s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 52s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 52s update-initramfs: deferring update (trigger activated) 53s Setting up lxd-installer (9) ... 53s Setting up python3-systemd (235-1build5) ... 53s Setting up grub2-common (2.12-5ubuntu7) ... 53s Setting up grub-pc-bin (2.12-5ubuntu7) ... 53s Setting up grub-pc (2.12-5ubuntu7) ... 53s Installing for i386-pc platform. 54s Installation finished. No error reported. 54s Sourcing file `/etc/default/grub' 54s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 54s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 54s Generating grub configuration file ... 54s Found linux image: /boot/vmlinuz-6.11.0-8-generic 54s Found initrd image: /boot/initrd.img-6.11.0-8-generic 54s Warning: os-prober will not be executed to detect other bootable partitions. 54s Systems on them will not be added to the GRUB boot configuration. 54s Check GRUB_DISABLE_OS_PROBER documentation entry. 54s Adding boot menu entry for UEFI Firmware Settings ... 54s done 54s Processing triggers for libc-bin (2.40-1ubuntu3) ... 54s Processing triggers for install-info (7.1.1-1) ... 54s Processing triggers for initramfs-tools (0.142ubuntu34) ... 54s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 54s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 63s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 63s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 63s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 64s Reading package lists... 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Reading package lists... 64s Building dependency tree... 64s Reading state information... 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s autopkgtest [11:06:09]: rebooting testbed after setup commands that affected boot 69s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 82s autopkgtest [11:06:26]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 85s autopkgtest [11:06:29]: @@@@@@@@@@@@@@@@@@@@ apt-source esda 88s Get:1 http://ftpmaster.internal/ubuntu plucky/universe esda 2.6.0-3 (dsc) [2708 B] 88s Get:2 http://ftpmaster.internal/ubuntu plucky/universe esda 2.6.0-3 (tar) [44.4 MB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky/universe esda 2.6.0-3 (diff) [7880 B] 89s gpgv: Signature made Fri Oct 18 01:35:56 2024 UTC 89s gpgv: using RSA key A8194D5D117E2D02DF30D30D07A9F562313446CD 89s gpgv: Can't check signature: No public key 89s dpkg-source: warning: cannot verify inline signature for ./esda_2.6.0-3.dsc: no acceptable signature found 90s autopkgtest [11:06:34]: testing package esda version 2.6.0-3 90s autopkgtest [11:06:34]: build not needed 96s autopkgtest [11:06:40]: test command1: preparing testbed 97s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Starting pkgProblemResolver with broken count: 0 98s Starting 2 pkgProblemResolver with broken count: 0 98s Done 98s The following additional packages will be installed: 98s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 98s gdal-data gdal-plugins libaec0 libaom3 libarmadillo14 libarpack2t64 libblas3 98s libblosc1 libcfitsio10t64 libde265-0 libdeflate0 libfontconfig1 libfreexl1 98s libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.13.0 libgeotiff5 libgfortran5 98s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 98s libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 98s libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 98s libjs-jquery-ui libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 98s liblbfgsb0 liblcms2-2 liblerc4 libllvm14t64 libltdl7 libminizip1t64 98s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 98s libopenjp2-7 libpfm4 libpoppler140 libpq5 libproj25 libqhull-r8.0 libraqm0 98s librttopo1 libsharpyuv0 libsnappy1v5 libspatialite8t64 libsz2 libtbb12 98s libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 liburiparser1 98s libwebp7 libwebpdemux2 libwebpmux3 libxerces-c3.2t64 libxft2 libxrender1 98s libxslt1.1 libxss1 llvm-14 llvm-14-linker-tools llvm-14-runtime mysql-common 98s proj-data python-esda-doc python-matplotlib-data python3-all python3-appdirs 98s python3-brotli python3-bs4 python3-click python3-click-plugins python3-cligj 98s python3-colorama python3-contourpy python3-cycler python3-dateutil 98s python3-decorator python3-esda python3-fiona python3-fonttools python3-fs 98s python3-geopandas python3-iniconfig python3-joblib python3-kiwisolver 98s python3-libpysal python3-llvmlite python3-lxml python3-lz4 98s python3-matplotlib python3-mpmath python3-numba python3-numpy 98s python3-packaging python3-pandas python3-pandas-lib python3-pil 98s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pyproj 98s python3-pytest python3-scipy python3-shapely python3-six python3-sklearn 98s python3-sklearn-lib python3-soupsieve python3-sympy python3-threadpoolctl 98s python3-tk python3-tz python3-ufolib2 python3.12-tk tk8.6-blt2.5 98s unicode-data unixodbc-common x11-common 98s Suggested packages: 98s blt-demo geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools 98s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 98s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 98s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 98s libhwloc-contrib-plugins libjs-jquery-ui-docs liblcms2-utils odbc-postgresql 98s tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 llvm-14-doc python-cycler-doc 98s python-joblib-doc python-libpysal-doc llvmlite-doc python-lxml-doc 98s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 98s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 98s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 98s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 98s nvidia-cuda-toolkit gcc gfortran python-numpy-doc python3-dev 98s python-pandas-doc python3-statsmodels python-pil-doc python-scipy-doc 98s python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc tix 98s python3-tk-dbg python3.13-tk 98s Recommended packages: 98s proj-bin libheif-plugin-aomenc libhwloc-plugins javascript-common 98s poppler-data llvm-14-dev python3-geopy python3-psycopg2 python3-rtree 98s python3-simplejson python3-psutil python3-networkx python3-sqlalchemy 98s python3-xarray python3-zstd python3-cssselect python3-html5lib numba-doc 98s python3-pip python3-bottleneck python3-numexpr python3-odf python3-openpyxl 98s python3-tables python3-olefile g++ | c++-compiler isympy-common 98s The following NEW packages will be installed: 98s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 98s fonts-lyx gdal-data gdal-plugins libaec0 libaom3 libarmadillo14 98s libarpack2t64 libblas3 libblosc1 libcfitsio10t64 libde265-0 libdeflate0 98s libfontconfig1 libfreexl1 libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.13.0 98s libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b 98s libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec 98s libheif-plugin-libde265 libheif1 libhwloc15 libimagequant0 libjbig0 98s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libkmlbase1t64 98s libkmldom1t64 libkmlengine1t64 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 98s libllvm14t64 libltdl7 libminizip1t64 libmysqlclient21 libnetcdf19t64 98s libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpfm4 libpoppler140 libpq5 98s libproj25 libqhull-r8.0 libraqm0 librttopo1 libsharpyuv0 libsnappy1v5 98s libspatialite8t64 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 98s libtiff6 libtk8.6 liburiparser1 libwebp7 libwebpdemux2 libwebpmux3 98s libxerces-c3.2t64 libxft2 libxrender1 libxslt1.1 libxss1 llvm-14 98s llvm-14-linker-tools llvm-14-runtime mysql-common proj-data python-esda-doc 98s python-matplotlib-data python3-all python3-appdirs python3-brotli 98s python3-bs4 python3-click python3-click-plugins python3-cligj 98s python3-colorama python3-contourpy python3-cycler python3-dateutil 98s python3-decorator python3-esda python3-fiona python3-fonttools python3-fs 98s python3-geopandas python3-iniconfig python3-joblib python3-kiwisolver 98s python3-libpysal python3-llvmlite python3-lxml python3-lz4 98s python3-matplotlib python3-mpmath python3-numba python3-numpy 98s python3-packaging python3-pandas python3-pandas-lib python3-pil 98s python3-pil.imagetk python3-platformdirs python3-pluggy python3-pyproj 98s python3-pytest python3-scipy python3-shapely python3-six python3-sklearn 98s python3-sklearn-lib python3-soupsieve python3-sympy python3-threadpoolctl 98s python3-tk python3-tz python3-ufolib2 python3.12-tk tk8.6-blt2.5 98s unicode-data unixodbc-common x11-common 98s 0 upgraded, 144 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 167 MB/167 MB of archives. 98s After this operation, 691 MB of additional disk space will be used. 98s Get:1 /tmp/autopkgtest.9Fgyiz/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [760 B] 98s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 99s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 99s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 99s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 99s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 99s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 99s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 99s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 99s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 99s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 99s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 99s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 99s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 100s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.9.3+dfsg-1 [269 kB] 100s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.9.3+dfsg-1 [25.2 kB] 100s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 100s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0~rc1-1 [2762 kB] 100s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 100s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 100s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 100s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-1.1ubuntu1 [107 kB] 100s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.0.1+dfsg-2build1 [104 kB] 100s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 100s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 100s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.4.1-2 [524 kB] 100s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 100s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 100s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 100s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 100s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 100s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB] 100s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB] 100s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.0-1 [7919 kB] 101s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 101s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 101s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 101s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 101s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 101s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 101s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 101s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.0-1 [1500 kB] 101s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 101s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 101s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 101s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 101s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 101s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.3-1 [11.5 kB] 101s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [8968 B] 101s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.3-1 [415 kB] 101s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-1 [35.9 kB] 101s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 101s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 101s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 101s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B] 101s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient21 amd64 8.0.40-1 [1250 kB] 101s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 101s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 101s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.4.7-7build1 [40.3 kB] 101s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-1ubuntu1 [158 kB] 101s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-1ubuntu1 [8796 B] 101s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-1ubuntu1 [30.7 kB] 101s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 101s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 101s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 101s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler140 amd64 24.08.0-1 [1168 kB] 101s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.0-1 [249 kB] 101s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 101s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 101s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 101s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [917 kB] 102s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal35 amd64 3.9.3+dfsg-1 [10.0 MB] 102s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 102s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 102s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 102s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 102s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 102s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 102s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 102s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 102s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm14t64 amd64 1:14.0.6-20 [24.0 MB] 102s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 102s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbmalloc2 amd64 2021.12.0-1ubuntu2 [52.5 kB] 102s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbbbind-2-5 amd64 2021.12.0-1ubuntu2 [15.4 kB] 102s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libtbb12 amd64 2021.12.0-1ubuntu2 [89.3 kB] 102s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 102s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 102s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 102s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-14-runtime amd64 1:14.0.6-20 [481 kB] 102s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-14-linker-tools amd64 1:14.0.6-20 [1342 kB] 103s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpfm4 amd64 4.13.0+git83-g91970fe-1 [429 kB] 103s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-14 amd64 1:14.0.6-20 [12.7 MB] 103s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-esda-doc all 2.6.0-3 [11.8 MB] 103s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 103s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 103s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 103s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 103s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB] 103s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.12.3-3 [109 kB] 103s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 103s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-click all 8.1.7-2 [79.5 kB] 103s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-click-plugins all 1.1.1-4 [9288 B] 103s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cligj all 0.7.2-2 [7788 B] 103s Get:104 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 104s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 104s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 104s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 104s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 104s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 104s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fiona amd64 1.10.1-2 [831 kB] 104s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 104s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 104s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 104s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproj amd64 3.7.0-1 [456 kB] 104s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-shapely amd64 2.0.6-4 [317 kB] 104s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 104s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-geopandas all 0.14.4-1 [1643 kB] 104s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 104s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 105s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 105s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 105s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3920 kB] 105s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 105s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-libpysal all 4.12.1-1 [1819 kB] 105s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-esda all 2.6.0-3 [90.6 kB] 105s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 105s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 105s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 105s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 105s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 105s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 105s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 106s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 106s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 106s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 106s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-llvmlite amd64 0.42.0-1build3 [165 kB] 106s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 106s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 106s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.6-1ubuntu1 [9806 B] 106s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 106s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 106s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-numba amd64 0.59.1+dfsg-1 [1770 kB] 106s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 106s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 106s Fetched 167 MB in 8s (21.6 MB/s) 106s Selecting previously unselected package libtcl8.6:amd64. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75575 files and directories currently installed.) 107s Preparing to unpack .../000-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 107s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 107s Selecting previously unselected package fonts-dejavu-mono. 107s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 107s Unpacking fonts-dejavu-mono (2.37-8) ... 107s Selecting previously unselected package fonts-dejavu-core. 107s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 107s Unpacking fonts-dejavu-core (2.37-8) ... 107s Selecting previously unselected package fontconfig-config. 107s Preparing to unpack .../003-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 107s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 107s Selecting previously unselected package libfontconfig1:amd64. 107s Preparing to unpack .../004-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 107s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 107s Selecting previously unselected package libxrender1:amd64. 107s Preparing to unpack .../005-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 107s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 107s Selecting previously unselected package libxft2:amd64. 107s Preparing to unpack .../006-libxft2_2.3.6-1build1_amd64.deb ... 107s Unpacking libxft2:amd64 (2.3.6-1build1) ... 107s Selecting previously unselected package x11-common. 107s Preparing to unpack .../007-x11-common_1%3a7.7+23ubuntu3_all.deb ... 107s Unpacking x11-common (1:7.7+23ubuntu3) ... 107s Selecting previously unselected package libxss1:amd64. 107s Preparing to unpack .../008-libxss1_1%3a1.2.3-1build3_amd64.deb ... 107s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 107s Selecting previously unselected package libtk8.6:amd64. 107s Preparing to unpack .../009-libtk8.6_8.6.15-1_amd64.deb ... 107s Unpacking libtk8.6:amd64 (8.6.15-1) ... 107s Selecting previously unselected package tk8.6-blt2.5. 107s Preparing to unpack .../010-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 107s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 107s Selecting previously unselected package blt. 107s Preparing to unpack .../011-blt_2.5.3+dfsg-7build1_amd64.deb ... 107s Unpacking blt (2.5.3+dfsg-7build1) ... 107s Selecting previously unselected package fonts-lyx. 107s Preparing to unpack .../012-fonts-lyx_2.4.2.1-1_all.deb ... 107s Unpacking fonts-lyx (2.4.2.1-1) ... 107s Selecting previously unselected package gdal-data. 107s Preparing to unpack .../013-gdal-data_3.9.3+dfsg-1_all.deb ... 107s Unpacking gdal-data (3.9.3+dfsg-1) ... 107s Selecting previously unselected package gdal-plugins:amd64. 107s Preparing to unpack .../014-gdal-plugins_3.9.3+dfsg-1_amd64.deb ... 107s Unpacking gdal-plugins:amd64 (3.9.3+dfsg-1) ... 107s Selecting previously unselected package libaec0:amd64. 107s Preparing to unpack .../015-libaec0_1.1.3-1_amd64.deb ... 107s Unpacking libaec0:amd64 (1.1.3-1) ... 107s Selecting previously unselected package libaom3:amd64. 107s Preparing to unpack .../016-libaom3_3.11.0~rc1-1_amd64.deb ... 107s Unpacking libaom3:amd64 (3.11.0~rc1-1) ... 107s Selecting previously unselected package libblas3:amd64. 107s Preparing to unpack .../017-libblas3_3.12.0-3build2_amd64.deb ... 107s Unpacking libblas3:amd64 (3.12.0-3build2) ... 107s Selecting previously unselected package libgfortran5:amd64. 107s Preparing to unpack .../018-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 107s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 107s Selecting previously unselected package liblapack3:amd64. 107s Preparing to unpack .../019-liblapack3_3.12.0-3build2_amd64.deb ... 107s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 107s Selecting previously unselected package libarpack2t64:amd64. 107s Preparing to unpack .../020-libarpack2t64_3.9.1-1.1ubuntu1_amd64.deb ... 107s Unpacking libarpack2t64:amd64 (3.9.1-1.1ubuntu1) ... 107s Selecting previously unselected package libarmadillo14. 107s Preparing to unpack .../021-libarmadillo14_1%3a14.0.1+dfsg-2build1_amd64.deb ... 107s Unpacking libarmadillo14 (1:14.0.1+dfsg-2build1) ... 108s Selecting previously unselected package libsnappy1v5:amd64. 108s Preparing to unpack .../022-libsnappy1v5_1.2.1-1_amd64.deb ... 108s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 108s Selecting previously unselected package libblosc1:amd64. 108s Preparing to unpack .../023-libblosc1_1.21.5+ds-1build1_amd64.deb ... 108s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 108s Selecting previously unselected package libcfitsio10t64:amd64. 108s Preparing to unpack .../024-libcfitsio10t64_4.4.1-2_amd64.deb ... 108s Unpacking libcfitsio10t64:amd64 (4.4.1-2) ... 108s Selecting previously unselected package libde265-0:amd64. 108s Preparing to unpack .../025-libde265-0_1.0.15-1build4_amd64.deb ... 108s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 108s Selecting previously unselected package libdeflate0:amd64. 108s Preparing to unpack .../026-libdeflate0_1.22-1_amd64.deb ... 108s Unpacking libdeflate0:amd64 (1.22-1) ... 108s Selecting previously unselected package libfyba0t64:amd64. 108s Preparing to unpack .../027-libfyba0t64_4.1.1-11build1_amd64.deb ... 108s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 108s Selecting previously unselected package libminizip1t64:amd64. 108s Preparing to unpack .../028-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 108s Unpacking libminizip1t64:amd64 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previously unselected package libxslt1.1:amd64. 110s Preparing to unpack .../086-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 110s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 110s Selecting previously unselected package llvm-14-runtime. 110s Preparing to unpack .../087-llvm-14-runtime_1%3a14.0.6-20_amd64.deb ... 110s Unpacking llvm-14-runtime (1:14.0.6-20) ... 110s Selecting previously unselected package llvm-14-linker-tools. 110s Preparing to unpack .../088-llvm-14-linker-tools_1%3a14.0.6-20_amd64.deb ... 110s Unpacking llvm-14-linker-tools (1:14.0.6-20) ... 110s Selecting previously unselected package libpfm4:amd64. 110s Preparing to unpack .../089-libpfm4_4.13.0+git83-g91970fe-1_amd64.deb ... 110s Unpacking libpfm4:amd64 (4.13.0+git83-g91970fe-1) ... 110s Selecting previously unselected package llvm-14. 110s Preparing to unpack .../090-llvm-14_1%3a14.0.6-20_amd64.deb ... 110s Unpacking llvm-14 (1:14.0.6-20) ... 110s Selecting previously unselected package python-esda-doc. 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unpack .../102-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 111s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 111s Selecting previously unselected package python3-contourpy. 111s Preparing to unpack .../103-python3-contourpy_1.3.0-2_amd64.deb ... 111s Unpacking python3-contourpy (1.3.0-2) ... 111s Selecting previously unselected package python3-cycler. 111s Preparing to unpack .../104-python3-cycler_0.12.1-1_all.deb ... 111s Unpacking python3-cycler (0.12.1-1) ... 111s Selecting previously unselected package python3-six. 111s Preparing to unpack .../105-python3-six_1.16.0-7_all.deb ... 111s Unpacking python3-six (1.16.0-7) ... 111s Selecting previously unselected package python3-dateutil. 111s Preparing to unpack .../106-python3-dateutil_2.9.0-2_all.deb ... 111s Unpacking python3-dateutil (2.9.0-2) ... 111s Selecting previously unselected package python3-decorator. 111s Preparing to unpack .../107-python3-decorator_5.1.1-5_all.deb ... 111s Unpacking python3-decorator 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112s Selecting previously unselected package python3-threadpoolctl. 112s Preparing to unpack .../119-python3-threadpoolctl_3.1.0-1_all.deb ... 112s Unpacking python3-threadpoolctl (3.1.0-1) ... 112s Selecting previously unselected package python3-sklearn-lib:amd64. 112s Preparing to unpack .../120-python3-sklearn-lib_1.4.2+dfsg-6_amd64.deb ... 112s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 112s Selecting previously unselected package python3-sklearn. 113s Preparing to unpack .../121-python3-sklearn_1.4.2+dfsg-6_all.deb ... 113s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 113s Selecting previously unselected package python3-libpysal. 113s Preparing to unpack .../122-python3-libpysal_4.12.1-1_all.deb ... 113s Unpacking python3-libpysal (4.12.1-1) ... 113s Selecting previously unselected package python3-esda. 113s Preparing to unpack .../123-python3-esda_2.6.0-3_all.deb ... 113s Unpacking python3-esda (2.6.0-3) ... 113s Selecting previously unselected package python3-ufolib2. 113s Preparing to unpack .../124-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 113s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 113s Selecting previously unselected package python3-mpmath. 113s Preparing to unpack .../125-python3-mpmath_1.3.0-1_all.deb ... 113s Unpacking python3-mpmath (1.3.0-1) ... 113s Selecting previously unselected package python3-sympy. 113s Preparing to unpack .../126-python3-sympy_1.13.3-1_all.deb ... 113s Unpacking python3-sympy (1.13.3-1) ... 113s Selecting previously unselected package python3-fs. 113s Preparing to unpack .../127-python3-fs_2.4.16-4_all.deb ... 113s Unpacking python3-fs (2.4.16-4) ... 113s Selecting previously unselected package python3-lxml:amd64. 113s Preparing to unpack .../128-python3-lxml_5.3.0-1_amd64.deb ... 113s Unpacking python3-lxml:amd64 (5.3.0-1) ... 113s Selecting previously unselected package python3-lz4. 113s Preparing to unpack .../129-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 113s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 113s Selecting previously unselected package unicode-data. 113s Preparing to unpack .../130-unicode-data_15.1.0-1_all.deb ... 113s Unpacking unicode-data (15.1.0-1) ... 113s Selecting previously unselected package python3-fonttools. 113s Preparing to unpack .../131-python3-fonttools_4.46.0-1build2_amd64.deb ... 113s Unpacking python3-fonttools (4.46.0-1build2) ... 113s Selecting previously unselected package python3-iniconfig. 113s Preparing to unpack .../132-python3-iniconfig_1.1.1-2_all.deb ... 113s Unpacking python3-iniconfig (1.1.1-2) ... 113s Selecting previously unselected package python3-kiwisolver. 113s Preparing to unpack .../133-python3-kiwisolver_1.4.7-2build1_amd64.deb ... 113s Unpacking python3-kiwisolver (1.4.7-2build1) ... 114s Selecting previously unselected package python3-llvmlite. 114s Preparing to unpack .../134-python3-llvmlite_0.42.0-1build3_amd64.deb ... 114s Unpacking python3-llvmlite (0.42.0-1build3) ... 114s Selecting previously unselected package python3-pil:amd64. 114s Preparing to unpack .../135-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 114s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 114s Selecting previously unselected package python3.12-tk. 114s Preparing to unpack .../136-python3.12-tk_3.12.7-3_amd64.deb ... 114s Unpacking python3.12-tk (3.12.7-3) ... 114s Selecting previously unselected package python3-tk:amd64. 114s Preparing to unpack .../137-python3-tk_3.12.6-1ubuntu1_amd64.deb ... 114s Unpacking python3-tk:amd64 (3.12.6-1ubuntu1) ... 114s Selecting previously unselected package python3-pil.imagetk:amd64. 114s Preparing to unpack .../138-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 114s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 114s Selecting previously unselected package python3-matplotlib. 114s Preparing to unpack .../139-python3-matplotlib_3.8.3-3_amd64.deb ... 114s Unpacking python3-matplotlib (3.8.3-3) ... 114s Selecting previously unselected package python3-numba. 114s Preparing to unpack .../140-python3-numba_0.59.1+dfsg-1_amd64.deb ... 114s Unpacking python3-numba (0.59.1+dfsg-1) ... 114s Selecting previously unselected package python3-pluggy. 114s Preparing to unpack .../141-python3-pluggy_1.5.0-1_all.deb ... 114s Unpacking python3-pluggy (1.5.0-1) ... 114s Selecting previously unselected package python3-pytest. 114s Preparing to unpack .../142-python3-pytest_8.3.3-1_all.deb ... 114s Unpacking python3-pytest (8.3.3-1) ... 114s Selecting previously unselected package autopkgtest-satdep. 114s Preparing to unpack .../143-1-autopkgtest-satdep.deb ... 114s Unpacking autopkgtest-satdep (0) ... 114s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 114s Setting up liblcms2-2:amd64 (2.16-2) ... 114s Setting up python3-iniconfig (1.1.1-2) ... 114s Setting up libtbbmalloc2:amd64 (2021.12.0-1ubuntu2) ... 114s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 114s Setting up libaom3:amd64 (3.11.0~rc1-1) ... 114s Setting up mysql-common (5.8+1.1.1) ... 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libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 116s Setting up libblosc1:amd64 (1.21.5+ds-1build1) ... 116s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 116s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 116s Setting up python3-dateutil (2.9.0-2) ... 116s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 116s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 116s Setting up python3-mpmath (1.3.0-1) ... 117s Setting up libde265-0:amd64 (1.0.15-1build4) ... 117s Setting up libkmlbase1t64:amd64 (1.3.0-12build1) ... 117s Setting up llvm-14-linker-tools (1:14.0.6-20) ... 117s Setting up python-matplotlib-data (3.8.3-3) ... 117s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 117s Setting up python3-appdirs (1.4.4-4) ... 117s Setting up python3-soupsieve (2.6-1) ... 117s Setting up libsz2:amd64 (1.1.3-1) ... 117s Setting up python-esda-doc (2.6.0-3) ... 117s Setting up gdal-plugins:amd64 (3.9.3+dfsg-1) ... 117s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 117s Setting up python3-sympy 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autopkgtest [11:07:27]: test command1: python3 -m pytest -v -k 'not test_map_comparison.py and not test_moran.py' esda/tests/ 143s autopkgtest [11:07:27]: test command1: [----------------------- 144s ============================= test session starts ============================== 144s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3 144s cachedir: .pytest_cache 144s rootdir: /tmp/autopkgtest.9Fgyiz/build.rJQ/src 144s configfile: pyproject.toml 144s plugins: typeguard-4.4.1 147s collecting ... collected 161 items / 35 deselected / 126 selected 147s 147s esda/tests/test_adbscan.py::TestADBSCAN::test_adbscan PASSED [ 0%] 147s esda/tests/test_adbscan.py::TestRemapLBLS::test_remap_lbls PASSED [ 1%] 147s esda/tests/test_adbscan.py::TestEnsemble::test_ensemble PASSED [ 2%] 149s esda/tests/test_adbscan.py::TestGetClusterBoundary::test_get_cluster_boundary PASSED [ 3%] 150s esda/tests/test_crand.py::test_vec_permutations_basic PASSED [ 3%] 150s 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[ 35%] 162s esda/tests/test_ljc.py::TestJoinCountsLocal::test_Join_Counts_Locals[W] PASSED [ 36%] 162s esda/tests/test_ljc.py::TestJoinCountsLocal::test_Join_Counts_Locals[Graph] PASSED [ 37%] 164s esda/tests/test_ljc_bv.py::TestLocalJoinCountsBV::test_Local_Join_Counts_BV[W] PASSED [ 38%] 164s esda/tests/test_ljc_bv.py::TestLocalJoinCountsBV::test_Local_Join_Counts_BV[Graph] PASSED [ 38%] 164s esda/tests/test_ljc_mv.py::TestLocalJoinCountsMV::test_Local_Join_Counts_MV[W] PASSED [ 39%] 164s esda/tests/test_ljc_mv.py::TestLocalJoinCountsMV::test_Local_Join_Counts_MV[Graph] PASSED [ 40%] 165s esda/tests/test_local_geary.py::TestGearyLocal::test_local_geary[W] PASSED [ 41%] 165s esda/tests/test_local_geary.py::TestGearyLocal::test_local_geary[Graph] PASSED [ 42%] 165s esda/tests/test_local_geary_mv.py::TestGearyLocalMV::test_local_geary_mv[W] PASSED [ 42%] 165s esda/tests/test_local_geary_mv.py::TestGearyLocalMV::test_local_geary_mv[Graph] PASSED [ 43%] 165s esda/tests/test_losh.py::TestLosh::test_losh[W] PASSED [ 44%] 165s esda/tests/test_losh.py::TestLosh::test_losh[Graph] PASSED [ 45%] 165s esda/tests/test_mixture_smoothing.py::MS_Tester::test_NP_Mixture_Smoother PASSED [ 46%] 165s esda/tests/test_shape.py::test_boundary_amplitude PASSED [ 46%] 165s esda/tests/test_shape.py::test_convex_hull_ratio PASSED [ 47%] 165s esda/tests/test_shape.py::test_length_width_diff PASSED [ 48%] 165s esda/tests/test_shape.py::test_radii_ratio PASSED [ 49%] 165s esda/tests/test_shape.py::test_diameter_ratio PASSED [ 50%] 165s esda/tests/test_shape.py::test_iaq PASSED [ 50%] 165s esda/tests/test_shape.py::test_ipq PASSED [ 51%] 165s esda/tests/test_shape.py::test_moment_of_interia PASSED [ 52%] 165s esda/tests/test_shape.py::test_second_areal_moment PASSED [ 53%] 165s esda/tests/test_shape.py::test_moa PASSED [ 53%] 165s esda/tests/test_shape.py::test_nmi PASSED [ 54%] 165s esda/tests/test_shape.py::test_mbc PASSED [ 55%] 166s esda/tests/test_shape.py::test_reflexive_angle_ratio PASSED [ 56%] 166s esda/tests/test_shape.py::test_fractal_dimension PASSED [ 57%] 166s esda/tests/test_shape.py::test_squareness PASSED [ 57%] 166s esda/tests/test_shape.py::test_rectangularity PASSED [ 58%] 166s esda/tests/test_shape.py::test_shape_index PASSED [ 59%] 166s esda/tests/test_shape.py::test_equivalent_rectangular_index PASSED [ 60%] 166s esda/tests/test_shape.py::test_form_factor PASSED [ 61%] 166s esda/tests/test_silhouette.py::TestSilhouette::test_boundary[W] PASSED [ 61%] 166s esda/tests/test_silhouette.py::TestSilhouette::test_boundary[Graph] PASSED [ 62%] 166s esda/tests/test_silhouette.py::TestSilhouette::test_path[W] PASSED [ 63%] 166s esda/tests/test_silhouette.py::TestSilhouette::test_path[Graph] PASSED [ 64%] 166s esda/tests/test_silhouette.py::TestSilhouette::test_nearest_label PASSED [ 65%] 166s esda/tests/test_silhouette.py::TestSilhouette::test_silhouette_alist[W] PASSED [ 65%] 166s esda/tests/test_silhouette.py::TestSilhouette::test_silhouette_alist[Graph] PASSED [ 66%] 166s esda/tests/test_smaup.py::Smaup_Tester::test_by_col PASSED [ 67%] 166s esda/tests/test_smaup.py::Smaup_Tester::test_sids PASSED [ 68%] 166s esda/tests/test_smaup.py::Smaup_Tester::test_smaup PASSED [ 69%] 166s esda/tests/test_smoothing.py::TestFlatten::test_flatten PASSED [ 69%] 166s esda/tests/test_smoothing.py::TestWMean::test_weighted_median PASSED [ 70%] 166s esda/tests/test_smoothing.py::TestAgeStd::test_crude_age_standardization PASSED [ 71%] 166s esda/tests/test_smoothing.py::TestAgeStd::test_direct_age_standardization PASSED [ 72%] 166s esda/tests/test_smoothing.py::TestAgeStd::test_indirect_age_standardization PASSED [ 73%] 166s esda/tests/test_smoothing.py::TestSRate::test_Empirical_Bayes PASSED [ 73%] 166s esda/tests/test_smoothing.py::TestSRate::test_Empirical_Bayes_tabular PASSED [ 74%] 166s esda/tests/test_smoothing.py::TestSRate::test_Excess_Risk PASSED [ 75%] 166s esda/tests/test_smoothing.py::TestSRate::test_Excess_Risk_tabular PASSED [ 76%] 166s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Empirical_Bayes SKIPPED [ 76%] 166s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Empirical_Bayes_tabular PASSED [ 77%] 166s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate PASSED [ 78%] 166s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate_tabular PASSED [ 79%] 166s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Rate PASSED [ 80%] 166s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Rate_tabular PASSED [ 80%] 166s esda/tests/test_smoothing.py::TestHB::test_Headbanging_Median_Rate SKIPPED [ 81%] 166s esda/tests/test_smoothing.py::TestHB::test_Headbanging_Median_Rate_tabular SKIPPED [ 82%] 166s esda/tests/test_smoothing.py::TestHB::test_Headbanging_Triples SKIPPED [ 83%] 166s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Age_Adjusted_Smoother PASSED [ 84%] 166s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Age_Adjusted_Smoother_tabular PASSED [ 84%] 166s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Disk_Smoother PASSED [ 85%] 166s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Disk_Smoother_tabular PASSED [ 86%] 166s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Kernel_Smoother PASSED [ 87%] 166s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Kernel_Smoother_tabular PASSED [ 88%] 166s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Spatial_Filtering PASSED [ 88%] 166s esda/tests/test_smoothing.py::TestUtils::test_assuncao_rate PASSED [ 89%] 166s esda/tests/test_smoothing.py::TestUtils::test_choynowski PASSED [ 90%] 166s esda/tests/test_smoothing.py::TestUtils::test_standardized_mortality_ratio PASSED [ 91%] 166s esda/tests/test_smoothing.py::TestUtils::test_sum_by_n PASSED [ 92%] 166s esda/tests/test_smoothing.py::i::test_assuncao_rate PASSED [ 92%] 166s esda/tests/test_smoothing.py::i::test_choynowski PASSED [ 93%] 166s esda/tests/test_smoothing.py::i::test_standardized_mortality_ratio PASSED [ 94%] 166s esda/tests/test_smoothing.py::i::test_sum_by_n PASSED [ 95%] 166s esda/tests/test_topo.py::TestTopo::test_prominence_valid PASSED [ 96%] 166s esda/tests/test_topo.py::TestTopo::test_prominence_options PASSED [ 96%] 166s esda/tests/test_topo.py::TestTopo::test_isolation_options SKIPPED (c...) [ 97%] 166s esda/tests/test_topo.py::TestTopo::test_isolation_valid SKIPPED (cou...) [ 98%] 166s esda/tests/test_topo.py::TestTopo::test_to_elevation PASSED [ 99%] 167s esda/tests/test_util.py::TestFdr::test_fdr PASSED [100%] 167s 167s =============================== warnings summary =============================== 167s ../../../../usr/lib/python3/dist-packages/libpysal/io/iohandlers/pyShpIO.py:247 167s esda/tests/test_smaup.py::Smaup_Tester::test_by_col 167s /usr/lib/python3/dist-packages/libpysal/io/iohandlers/pyShpIO.py:247: FutureWarning: Objects based on the `Geometry` class will deprecated and removed in a future version of libpysal. 167s shp = self.type(vertices) 167s 167s ../../../../usr/lib/python3/dist-packages/libpysal/cg/shapes.py:1408 167s esda/tests/test_smaup.py::Smaup_Tester::test_by_col 167s /usr/lib/python3/dist-packages/libpysal/cg/shapes.py:1408: FutureWarning: Objects based on the `Geometry` class will deprecated and removed in a future version of libpysal. 167s self._part_rings = [Ring(vertices)] 167s 167s esda/tests/test_moran.py:69 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_moran.py:69: FutureWarning: `use_index` defaults to False but will default to True in future. Set True/False directly to control this behavior and silence this warning 167s libpysal.weights.Queen.from_dataframe(sac1), 167s 167s esda/tests/test_adbscan.py::TestADBSCAN::test_adbscan 167s esda/tests/test_adbscan.py::TestADBSCAN::test_adbscan 167s esda/tests/test_adbscan.py::TestRemapLBLS::test_remap_lbls 167s esda/tests/test_adbscan.py::TestRemapLBLS::test_remap_lbls 167s esda/tests/test_adbscan.py::TestGetClusterBoundary::test_get_cluster_boundary 167s esda/tests/test_adbscan.py::TestGetClusterBoundary::test_get_cluster_boundary 167s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=3431) is multi-threaded, use of fork() may lead to deadlocks in the child. 167s self.pid = os.fork() 167s 167s esda/tests/test_adbscan.py::TestRemapLBLS::test_remap_lbls 167s esda/tests/test_adbscan.py::TestEnsemble::test_ensemble 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/adbscan.py:347: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ 0. 0. nan 7. 7.]' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 167s remapped_solus.loc[:, s] = solus[s].map(remap_ids) 167s 167s esda/tests/test_adbscan.py::TestRemapLBLS::test_remap_lbls 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/adbscan.py:340: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '[ 0. 0. nan 7. 7.]' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 167s remapped_solus.loc[:, s_ids] = remapped_df 167s 167s esda/tests/test_gamma.py::TestGamma::test_by_col[W] 167s esda/tests/test_gamma.py::TestGamma::test_by_col[Graph] 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_gamma.py:94: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s r1 = Gamma.by_col(df, ["y"], w=w) 167s 167s esda/tests/test_gamma.py::TestGamma::test_by_col[W] 167s esda/tests/test_gamma.py::TestGamma::test_by_col[Graph] 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_gamma.py:102: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s Gamma.by_col(df, ["y"], inplace=True, operation="s", w=w) 167s 167s esda/tests/test_geary.py::TestGeary::test_by_col[W] 167s esda/tests/test_geary.py::TestGeary::test_by_col[Graph] 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_geary.py:75: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s r1 = geary.Geary.by_col(df, ["y"], w=w, permutations=999) 167s 167s esda/tests/test_getisord.py::TestGetisG::test_by_col[W] 167s esda/tests/test_getisord.py::TestGetisG::test_by_col[Graph] 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_getisord.py:38: FutureWarning: The `.by_cols()` methods are deprecated and will be removed in a future version of `esda`. 167s r1 = getisord.G.by_col(df, ["y"], w=w) 167s 167s esda/tests/test_getisord.py::TestGLocal::test_G_Local_Binary[W] 167s esda/tests/test_getisord.py::TestGLocal::test_G_Local_Binary[W] 167s esda/tests/test_getisord.py::TestGLocal::test_G_Local_Binary[W] 167s /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: This process (pid=3431) is multi-threaded, use of fork() may lead to deadlocks in the child. 167s pid = os.fork() 167s 167s esda/tests/test_getisord.py::TestGLocal::test_G_star_Row_Standardized_values[W] 167s esda/tests/test_getisord.py::TestGLocal::test_G_star_Row_Standardized_values[Graph] 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/getisord.py:421: UserWarning: Gi* requested, but (a) weights are already row-standardized, (b) no weights are on the diagonal, and (c) no default value supplied to star. Assuming that the self-weight is equivalent to the maximum weight in the row. To use a different default (like, .5), set `star=.5`, or use libpysal.weights.fill_diagonal() to set the diagonal values of your weights matrix and use `star=None` in Gi_Local. 167s w, star = _infer_star_and_structure_w(w, star, transform) 167s 167s esda/tests/test_getisord.py::TestGLocal::test_by_col[W] 167s esda/tests/test_getisord.py::TestGLocal::test_by_col[Graph] 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_getisord.py:90: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s r1 = getisord.G_Local.by_col(df, ["y"], w=w, seed=12345) 167s 167s esda/tests/test_join_counts.py::TestJoinCounts::test_by_col[W] 167s esda/tests/test_join_counts.py::TestJoinCounts::test_by_col[Graph] 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_join_counts.py:60: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s r1 = Join_Counts.by_col( 167s 167s esda/tests/test_lee.py::Lee_Tester::test_global 167s esda/tests/test_lee.py::i::test_global 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_lee.py:16: FutureWarning: `use_index` defaults to False but will default to True in future. Set True/False directly to control this behavior and silence this warning 167s self.w = libpysal.weights.Queen.from_dataframe(self.data) 167s 167s esda/tests/test_shape.py::test_second_areal_moment 167s esda/tests/test_shape.py::test_moa 167s esda/tests/test_shape.py::test_nmi 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/shape.py:562: DeprecationWarning: DataFrameGroupBy.apply operated on the grouping columns. This behavior is deprecated, and in a future version of pandas the grouping columns will be excluded from the operation. Either pass `include_groups=False` to exclude the groupings or explicitly select the grouping columns after groupby to silence this warning. 167s .apply( 167s 167s esda/tests/test_smaup.py::Smaup_Tester::test_by_col 167s /usr/lib/python3/dist-packages/libpysal/io/iohandlers/pyShpIO.py:232: FutureWarning: Objects based on the `Geometry` class will deprecated and removed in a future version of libpysal. 167s shp = self.type(vertices, holes) 167s 167s esda/tests/test_smaup.py::Smaup_Tester::test_by_col 167s /usr/lib/python3/dist-packages/libpysal/cg/shapes.py:1405: FutureWarning: Objects based on the `Geometry` class will deprecated and removed in a future version of libpysal. 167s self._part_rings = list(map(Ring, vertices)) 167s 167s esda/tests/test_smoothing.py::TestSRate::test_Empirical_Bayes_tabular 167s esda/tests/test_smoothing.py::TestSRate::test_Excess_Risk_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/smoothing.py:661: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s warnings.warn(msg, FutureWarning, stacklevel=True) 167s 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Empirical_Bayes_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:164: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s s_eb = sm.Spatial_Empirical_Bayes.by_col( 167s 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Empirical_Bayes_tabular 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate_tabular 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate_tabular 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate_tabular 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Rate_tabular 167s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Disk_Smoother_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/smoothing.py:867: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s cls.by_col(new, e, b, w=w, inplace=True, **kwargs) 167s 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:228: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s out_smr = sm.Spatial_Median_Rate.by_col(self.df, self.ename, self.bname, self.w) 167s 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:229: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s out_smr_w = sm.Spatial_Median_Rate.by_col( 167s 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Median_Rate_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:232: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s out_smr2 = sm.Spatial_Median_Rate.by_col( 167s 167s esda/tests/test_smoothing.py::TestSRate::test_Spatial_Rate_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:182: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s out_sr = sm.Spatial_Rate.by_col(self.df, self.ename, self.bname, w=self.w) 167s 167s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Age_Adjusted_Smoother_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:486: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s kr = sm.Age_Adjusted_Smoother.by_col(dfb, "e", "b", w=self.kw, s="s") 167s 167s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Disk_Smoother_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:505: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s disk = sm.Disk_Smoother.by_col(dfa, "e", "b", self.kw) 167s 167s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Kernel_Smoother_tabular 167s /tmp/autopkgtest.9Fgyiz/build.rJQ/src/esda/tests/test_smoothing.py:527: FutureWarning: The `.by_col()` methods are deprecated and will be removed in a future version of `esda`. 167s sf = sm.Spatial_Filtering.by_col(dfa, "e", "b", 3, 3, r=30) 167s 167s esda/tests/test_smoothing.py::TestKernel_AgeAdj_SM::test_Kernel_Smoother_tabular 167s /usr/lib/python3/dist-packages/libpysal/cg/standalone.py:155: FutureWarning: Objects based on the `Geometry` class will deprecated and removed in a future version of libpysal. 167s rect = Rectangle( 167s 167s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 167s ==== 115 passed, 9 skipped, 35 deselected, 2 xpassed, 55 warnings in 22.82s ==== 168s autopkgtest [11:07:52]: test command1: -----------------------] 168s command1 PASS 168s autopkgtest [11:07:52]: test command1: - - - - - - - - - - results - - - - - - - - - - 169s autopkgtest [11:07:53]: @@@@@@@@@@@@@@@@@@@@ summary 169s command1 PASS 180s virt: nova [W] Skipping flock for amd64 180s virt: Creating nova instance adt-plucky-amd64-esda-20241115-110504-juju-7f2275-prod-proposed-migration-environment-2-dd27ff71-d344-4125-8f46-16b8c5bf075b from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...