0s autopkgtest [08:21:48]: starting date and time: 2024-11-13 08:21:48+0000
  0s autopkgtest [08:21:48]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [08:21:48]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s1mbld93/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade emperor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-19.secgroup --name adt-plucky-amd64-emperor-20241113-082147-juju-7f2275-prod-proposed-migration-environment-20-13c3820f-22f9-4617-81e5-c8c63d362863 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 43s autopkgtest [08:22:31]: testbed dpkg architecture: amd64
 44s autopkgtest [08:22:32]: testbed apt version: 2.9.8
 44s autopkgtest [08:22:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 45s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 45s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB]
 45s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB]
 45s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB]
 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB]
 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB]
 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB]
 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB]
 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB]
 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB]
 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB]
 45s Fetched 2173 kB in 1s (2682 kB/s)
 45s Reading package lists...
 48s Reading package lists...
 48s Building dependency tree...
 48s Reading state information...
 48s Calculating upgrade...
 48s The following NEW packages will be installed:
 48s   python3.13-gdbm
 48s The following packages will be upgraded:
 48s   libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal
 48s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 48s Need to get 253 kB of archives.
 48s After this operation, 147 kB of additional disk space will be used.
 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB]
 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB]
 48s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB]
 48s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB]
 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B]
 48s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB]
 49s Fetched 253 kB in 0s (596 kB/s)
 49s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
 49s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ...
 49s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
 49s Setting up python3-minimal (3.12.7-1) ...
 49s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75541 files and directories currently installed.)
 49s Preparing to unpack .../python3_3.12.7-1_amd64.deb ...
 49s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 49s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ...
 49s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
 49s Selecting previously unselected package python3.13-gdbm.
 49s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ...
 49s Unpacking python3.13-gdbm (3.13.0-2) ...
 49s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ...
 49s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ...
 49s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ...
 49s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ...
 49s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ...
 49s Setting up python3.13-gdbm (3.13.0-2) ...
 49s Setting up libpython3-stdlib:amd64 (3.12.7-1) ...
 49s Setting up python3 (3.12.7-1) ...
 50s Setting up python3-gdbm:amd64 (3.12.7-1) ...
 50s Processing triggers for man-db (2.12.1-3) ...
 50s Processing triggers for libc-bin (2.40-1ubuntu3) ...
 50s Reading package lists...
 50s Building dependency tree...
 50s Reading state information...
 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 51s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 52s Reading package lists...
 52s Reading package lists...
 52s Building dependency tree...
 52s Reading state information...
 52s Calculating upgrade...
 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 52s Reading package lists...
 52s Building dependency tree...
 52s Reading state information...
 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 55s autopkgtest [08:22:43]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024
 55s autopkgtest [08:22:43]: @@@@@@@@@@@@@@@@@@@@ apt-source emperor
 58s Get:1 http://ftpmaster.internal/ubuntu plucky/universe emperor 1.0.3+ds-9.1 (dsc) [2367 B]
 58s Get:2 http://ftpmaster.internal/ubuntu plucky/universe emperor 1.0.3+ds-9.1 (tar) [18.0 MB]
 58s Get:3 http://ftpmaster.internal/ubuntu plucky/universe emperor 1.0.3+ds-9.1 (diff) [9144 B]
 58s gpgv: Signature made Mon Jul  1 18:34:32 2024 UTC
 58s gpgv:                using RSA key 406220C8B8552802378CCE411F5C7A8B45564314
 58s gpgv:                issuer "bage@debian.org"
 58s gpgv: Can't check signature: No public key
 58s dpkg-source: warning: cannot verify inline signature for ./emperor_1.0.3+ds-9.1.dsc: no acceptable signature found
 59s autopkgtest [08:22:47]: testing package emperor version 1.0.3+ds-9.1
 59s autopkgtest [08:22:47]: build not needed
 61s autopkgtest [08:22:49]: test run-unit-test: preparing testbed
 68s Reading package lists...
 69s Building dependency tree...
 69s Reading state information...
 69s Starting pkgProblemResolver with broken count: 0
 69s Starting 2 pkgProblemResolver with broken count: 0
 69s Done
 69s The following additional packages will be installed:
 69s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdb libaec0
 69s   libargon2-1 libbabeltrace1 libblas3 libdebuginfod-common libdebuginfod1t64
 69s   libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libipt2
 69s   libjs-backbone libjs-bootstrap libjs-bootstrap-tour libjs-codemirror
 69s   libjs-es6-promise libjs-jed libjs-jquery libjs-jquery-typeahead
 69s   libjs-jquery-ui libjs-marked libjs-mathjax libjs-moment libjs-requirejs
 69s   libjs-requirejs-text libjs-text-encoding libjs-underscore libjs-xterm
 69s   liblapack3 liblbfgsb0 liblzf1 libnorm1t64 libpgm-5.3-0t64
 69s   libpython3.13-minimal libpython3.13-stdlib libsodium23
 69s   libsource-highlight-common libsource-highlight4t64 libssw0 libsz2 libzmq5
 69s   node-jed python-tinycss2-common python3-all python3-argon2 python3-asttokens
 69s   python3-biom-format python3-bleach python3-bs4 python3-click
 69s   python3-colorama python3-comm python3-coverage python3-dateutil
 69s   python3-debugpy python3-decorator python3-defusedxml python3-emperor
 69s   python3-emperor-doc python3-executing python3-fastjsonschema python3-h5py
 69s   python3-h5py-serial python3-hdmedians python3-html5lib python3-iniconfig
 69s   python3-ipykernel python3-ipython python3-ipython-genutils python3-jedi
 69s   python3-jupyter-client python3-jupyter-core python3-jupyterlab-pygments
 69s   python3-matplotlib-inline python3-mistune python3-natsort python3-nbclient
 69s   python3-nbconvert python3-nbformat python3-nest-asyncio python3-notebook
 69s   python3-numpy python3-packaging python3-pandas python3-pandas-lib
 69s   python3-pandocfilters python3-parso python3-patsy python3-pexpect
 69s   python3-platformdirs python3-pluggy python3-prometheus-client
 69s   python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval
 69s   python3-py python3-pytest python3-scipy python3-send2trash python3-six
 69s   python3-skbio python3-soupsieve python3-stack-data python3-statsmodels
 69s   python3-statsmodels-lib python3-terminado python3-tinycss2 python3-tornado
 69s   python3-traitlets python3-typeshed python3-tz python3-wcwidth
 69s   python3-webencodings python3-zmq python3.13 python3.13-minimal
 69s Suggested packages:
 69s   gdb-doc gdbserver libjs-jquery-lazyload libjs-json libjs-jquery-ui-docs
 69s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc python-argon2-doc
 69s   python-biom-format-doc python-bleach-doc python-coverage-doc
 69s   python-fastjsonschema-doc python-h5py-doc python3-genshi python3-lxml
 69s   python-ipython-doc python-jupyter-client-doc python3-pip python-natsort-doc
 69s   python-nbconvert-doc texlive-fonts-recommended texlive-plain-generic
 69s   texlive-xetex python-notebook-doc gcc gfortran python-numpy-doc python3-dev
 69s   python-pandas-doc python-patsy-doc python-pexpect-doc subversion
 69s   python-scipy-doc python-skbio-doc python-statsmodels-doc
 69s   python-terminado-doc python-tinycss2-doc python3-pycurl python-tornado-doc
 69s   python3-twisted python-traitlets-doc python3.13-venv python3.13-doc
 69s   binfmt-support
 69s Recommended packages:
 69s   libc-dbg javascript-common python3-lxml python3-matplotlib pandoc
 69s   python3-ipywidgets python3-bottleneck python3-numexpr python3-odf
 69s   python3-openpyxl python3-tables python3-numba g++ | c++-compiler python3-pil
 69s   python3-joblib python3-cvxopt
 69s The following NEW packages will be installed:
 69s   autopkgtest-satdep fonts-font-awesome fonts-glyphicons-halflings
 69s   fonts-mathjax gdb libaec0 libargon2-1 libbabeltrace1 libblas3
 69s   libdebuginfod-common libdebuginfod1t64 libgfortran5 libgomp1
 69s   libhdf5-103-1t64 libhdf5-hl-100t64 libipt2 libjs-backbone libjs-bootstrap
 69s   libjs-bootstrap-tour libjs-codemirror libjs-es6-promise libjs-jed
 69s   libjs-jquery libjs-jquery-typeahead libjs-jquery-ui libjs-marked
 69s   libjs-mathjax libjs-moment libjs-requirejs libjs-requirejs-text
 69s   libjs-text-encoding libjs-underscore libjs-xterm liblapack3 liblbfgsb0
 69s   liblzf1 libnorm1t64 libpgm-5.3-0t64 libpython3.13-minimal
 69s   libpython3.13-stdlib libsodium23 libsource-highlight-common
 69s   libsource-highlight4t64 libssw0 libsz2 libzmq5 node-jed
 69s   python-tinycss2-common python3-all python3-argon2 python3-asttokens
 69s   python3-biom-format python3-bleach python3-bs4 python3-click
 69s   python3-colorama python3-comm python3-coverage python3-dateutil
 69s   python3-debugpy python3-decorator python3-defusedxml python3-emperor
 69s   python3-emperor-doc python3-executing python3-fastjsonschema python3-h5py
 69s   python3-h5py-serial python3-hdmedians python3-html5lib python3-iniconfig
 69s   python3-ipykernel python3-ipython python3-ipython-genutils python3-jedi
 69s   python3-jupyter-client python3-jupyter-core python3-jupyterlab-pygments
 69s   python3-matplotlib-inline python3-mistune python3-natsort python3-nbclient
 69s   python3-nbconvert python3-nbformat python3-nest-asyncio python3-notebook
 69s   python3-numpy python3-packaging python3-pandas python3-pandas-lib
 69s   python3-pandocfilters python3-parso python3-patsy python3-pexpect
 69s   python3-platformdirs python3-pluggy python3-prometheus-client
 69s   python3-prompt-toolkit python3-psutil python3-ptyprocess python3-pure-eval
 69s   python3-py python3-pytest python3-scipy python3-send2trash python3-six
 69s   python3-skbio python3-soupsieve python3-stack-data python3-statsmodels
 69s   python3-statsmodels-lib python3-terminado python3-tinycss2 python3-tornado
 69s   python3-traitlets python3-typeshed python3-tz python3-wcwidth
 69s   python3-webencodings python3-zmq python3.13 python3.13-minimal
 69s 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded.
 69s Need to get 77.3 MB/77.3 MB of archives.
 69s After this operation, 380 MB of additional disk space will be used.
 69s Get:1 /tmp/autopkgtest.6uiH8m/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [740 B]
 69s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB]
 70s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB]
 70s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB]
 70s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
 70s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
 70s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
 70s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libbabeltrace1 amd64 1.5.11-4 [164 kB]
 70s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB]
 70s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libipt2 amd64 2.1.1-1 [58.9 kB]
 70s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight-common all 3.1.9-4.3build1 [64.2 kB]
 70s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight4t64 amd64 3.1.9-4.3build1 [258 kB]
 70s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 gdb amd64 15.1-1ubuntu2 [4119 kB]
 70s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
 70s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB]
 70s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB]
 70s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB]
 70s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB]
 70s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
 70s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB]
 71s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB]
 71s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
 71s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-backbone all 1.4.1~dfsg+~1.4.15-3 [185 kB]
 71s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
 71s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 71s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap-tour all 0.12.0+dfsg-5 [21.4 kB]
 71s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es6-promise all 4.2.8-12 [14.1 kB]
 71s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-jed all 1.1.1-4 [15.2 kB]
 71s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jed all 1.1.1-4 [2584 B]
 71s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-typeahead all 2.11.0+dfsg1-3 [48.9 kB]
 71s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
 71s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-moment all 2.29.4+ds-1 [147 kB]
 71s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-text-encoding all 0.7.0-5 [140 kB]
 71s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-xterm all 5.3.0-3 [476 kB]
 71s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB]
 71s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
 71s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
 71s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB]
 71s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB]
 71s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB]
 71s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB]
 71s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssw0 amd64 1.1-15 [22.5 kB]
 71s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB]
 71s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-tinycss2-common all 1.3.0-1 [34.1 kB]
 71s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB]
 71s Get:46 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B]
 71s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-argon2 amd64 21.1.0-2build1 [21.0 kB]
 71s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-asttokens all 2.4.1-2 [20.8 kB]
 71s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB]
 71s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB]
 71s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B]
 71s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-colorama all 0.4.6-4 [32.1 kB]
 71s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-click all 8.1.7-2 [79.5 kB]
 71s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB]
 71s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
 71s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB]
 71s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB]
 71s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB]
 71s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
 71s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB]
 72s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB]
 72s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-webencodings all 0.5.1-5 [11.5 kB]
 72s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-html5lib all 1.2-1 [90.8 kB]
 72s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bleach all 6.1.0-2 [49.6 kB]
 72s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-soupsieve all 2.6-1 [33.0 kB]
 72s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bs4 all 4.12.3-3 [109 kB]
 72s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB]
 72s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-comm all 0.2.1-1 [7016 B]
 72s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu2 [147 kB]
 72s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-debugpy amd64 1.8.8+ds-1ubuntu1 [936 kB]
 72s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB]
 72s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB]
 72s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB]
 72s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-patsy all 0.5.6-1 [181 kB]
 72s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1 [1783 kB]
 72s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-statsmodels all 0.14.4+dfsg-1 [5010 kB]
 72s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdmedians amd64 0.14.2-5.1build1 [124 kB]
 72s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-skbio amd64 0.6.2-3 [1407 kB]
 72s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-emperor all 1.0.3+ds-9.1 [133 kB]
 72s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-emperor-doc all 1.0.3+ds-9.1 [122 kB]
 72s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-executing all 2.1.0-0.1 [24.4 kB]
 72s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB]
 72s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
 72s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-parso all 0.8.3-1 [67.2 kB]
 72s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB]
 72s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB]
 72s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib-inline all 0.1.6-2 [8784 B]
 72s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ptyprocess all 0.7.0-6 [14.8 kB]
 72s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pexpect all 4.9-2 [48.1 kB]
 72s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB]
 72s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-prompt-toolkit all 3.0.48-1 [256 kB]
 72s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pure-eval all 0.2.3-1 [11.4 kB]
 72s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB]
 72s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipython all 8.20.0-1ubuntu1 [561 kB]
 72s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB]
 72s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB]
 73s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB]
 73s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tornado amd64 6.4.1-3 [299 kB]
 73s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-py all 1.11.0-2 [72.7 kB]
 73s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-zmq amd64 24.0.1-5build1 [286 kB]
 73s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-client all 8.6.2-3 [78.1 kB]
 73s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nest-asyncio all 1.5.4-1 [6256 B]
 73s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipykernel all 6.29.5-1 [82.5 kB]
 73s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipython-genutils all 0.2.0-7 [22.0 kB]
 73s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyterlab-pygments all 0.2.2-3 [6054 B]
 73s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mistune all 3.0.2-2 [32.9 kB]
 73s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB]
 73s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbclient all 0.8.0-1 [55.6 kB]
 73s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandocfilters all 1.5.1-1 [23.6 kB]
 73s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tinycss2 all 1.3.0-1 [19.6 kB]
 73s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbconvert all 7.16.4-2 [139 kB]
 73s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-codemirror all 5.65.0+~cs5.83.9-3 [755 kB]
 73s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-marked all 4.2.3+ds+~4.0.7-3 [36.2 kB]
 73s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
 73s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-requirejs all 2.3.7+ds+~2.1.37-1 [201 kB]
 73s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-requirejs-text all 2.0.12-1.1 [9056 B]
 73s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-terminado all 0.18.1-1 [13.2 kB]
 73s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-prometheus-client all 0.19.0+ds1-1 [41.7 kB]
 73s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-send2trash all 1.8.2-1 [15.5 kB]
 73s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-notebook all 6.4.13-2 [1618 kB]
 73s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
 73s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB]
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 75s Selecting previously unselected package libjs-es6-promise.
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 75s Selecting previously unselected package libpgm-5.3-0t64:amd64.
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 75s Unpacking libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ...
 75s Selecting previously unselected package libpython3.13-stdlib:amd64.
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 75s Selecting previously unselected package libsodium23:amd64.
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 75s Selecting previously unselected package python-tinycss2-common.
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 76s Selecting previously unselected package python3-colorama.
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 76s Unpacking python3-six (1.16.0-7) ...
 76s Selecting previously unselected package python3-dateutil.
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 76s Selecting previously unselected package python3-pandas-lib:amd64.
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 76s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ...
 76s Selecting previously unselected package python3-pandas.
 76s Preparing to unpack .../056-python3-pandas_2.2.3+dfsg-5_all.deb ...
 76s Unpacking python3-pandas (2.2.3+dfsg-5) ...
 76s Selecting previously unselected package python3-decorator.
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 76s Unpacking python3-decorator (5.1.1-5) ...
 76s Selecting previously unselected package python3-scipy.
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 76s Unpacking python3-scipy (1.13.1-5) ...
 77s Selecting previously unselected package python3-biom-format.
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 77s Unpacking python3-biom-format (2.1.16-1) ...
 77s Selecting previously unselected package python3-webencodings.
 77s Preparing to unpack .../060-python3-webencodings_0.5.1-5_all.deb ...
 77s Unpacking python3-webencodings (0.5.1-5) ...
 77s Selecting previously unselected package python3-html5lib.
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 77s Unpacking python3-html5lib (1.2-1) ...
 77s Selecting previously unselected package python3-bleach.
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 77s Unpacking python3-bleach (6.1.0-2) ...
 77s Selecting previously unselected package python3-soupsieve.
 77s Preparing to unpack .../063-python3-soupsieve_2.6-1_all.deb ...
 77s Unpacking python3-soupsieve (2.6-1) ...
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100s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ...
101s Setting up python3-debugpy (1.8.8+ds-1ubuntu1) ...
101s Setting up python3-nbclient (0.8.0-1) ...
102s Setting up python3-patsy (0.5.6-1) ...
102s Setting up python3-pandas (2.2.3+dfsg-5) ...
109s Setting up python3-ipython (8.20.0-1ubuntu1) ...
110s Setting up python3-ipykernel (6.29.5-1) ...
110s Setting up python3-h5py (3.11.0-5ubuntu1) ...
110s Setting up python3-nbconvert (7.16.4-2) ...
110s Setting up python3-statsmodels (0.14.4+dfsg-1) ...
114s Setting up python3-notebook (6.4.13-2) ...
115s Setting up python3-biom-format (2.1.16-1) ...
115s Setting up python3-skbio (0.6.2-3) ...
116s Setting up python3-emperor (1.0.3+ds-9.1) ...
116s Setting up autopkgtest-satdep (0) ...
116s Processing triggers for systemd (256.5-2ubuntu4) ...
116s Processing triggers for man-db (2.12.1-3) ...
117s Processing triggers for libc-bin (2.40-1ubuntu3) ...
121s (Reading database ... 99633 files and directories currently installed.)
121s Removing autopkgtest-satdep (0) ...
122s autopkgtest [08:23:50]: test run-unit-test: [-----------------------
122s /tmp/autopkgtest.6uiH8m/build.2uZ/src/debian/tests/run-unit-test: line 13: quilt: command not found
122s Running Tests
122s Testing with python3.13 in /tmp/autopkgtest.6uiH8m/autopkgtest_tmp:
123s ============================= test session starts ==============================
123s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
123s rootdir: /tmp/autopkgtest.6uiH8m/autopkgtest_tmp
123s plugins: typeguard-4.4.1
123s collected 0 items / 6 errors
123s 
123s ==================================== ERRORS ====================================
123s _____________________ ERROR collecting tests/test_core.py ______________________
123s ImportError while importing test module '/tmp/autopkgtest.6uiH8m/autopkgtest_tmp/tests/test_core.py'.
123s Hint: make sure your test modules/packages have valid Python names.
123s Traceback:
123s /usr/lib/python3/dist-packages/h5py/__init__.py:24: in <module>
123s     from . import _debian_h5py_serial as _h5py
123s /usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py:25: in <module>
123s     from . import _errors
123s E   ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py)
123s 
123s During handling of the above exception, another exception occurred:
123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
123s     return _bootstrap._gcd_import(name[level:], package, level)
123s tests/test_core.py:13: in <module>
123s     from skbio import OrdinationResults
123s /usr/lib/python3/dist-packages/skbio/__init__.py:12: in <module>
123s     import skbio.io  # noqa
123s /usr/lib/python3/dist-packages/skbio/io/__init__.py:251: in <module>
123s     from .registry import write, read, sniff, create_format, io_registry
123s /usr/lib/python3/dist-packages/skbio/io/registry.py:181: in <module>
123s     from .util import _resolve_file, open_file, open_files, _d as _open_kwargs
123s /usr/lib/python3/dist-packages/skbio/io/util.py:32: in <module>
123s     from skbio.io._iosources import get_io_sources, get_compression_handler
123s /usr/lib/python3/dist-packages/skbio/io/_iosources.py:18: in <module>
123s     from ._fileobject import (
123s /usr/lib/python3/dist-packages/skbio/io/_fileobject.py:10: in <module>
123s     import h5py
123s /usr/lib/python3/dist-packages/h5py/__init__.py:26: in <module>
123s     from . import _debian_h5py_mpi as _h5py
123s E   ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)
123s ____________________ ERROR collecting tests/test_format.py _____________________
123s ImportError while importing test module '/tmp/autopkgtest.6uiH8m/autopkgtest_tmp/tests/test_format.py'.
123s Hint: make sure your test modules/packages have valid Python names.
123s Traceback:
123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
123s     from . import multiarray
123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
123s     from . import overrides
123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
123s     from numpy.core._multiarray_umath import (
123s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
123s 
123s During handling of the above exception, another exception occurred:
123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
123s     from numpy.__config__ import show as show_config
123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
123s     from numpy.core._multiarray_umath import (
123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
123s     raise ImportError(msg)
123s E   ImportError: 
123s E   
123s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
123s E   
123s E   Importing the numpy C-extensions failed. This error can happen for
123s E   many reasons, often due to issues with your setup or how NumPy was
123s E   installed.
123s E   
123s E   We have compiled some common reasons and troubleshooting tips at:
123s E   
123s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
123s E   
123s E   Please note and check the following:
123s E   
123s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
123s E     * The NumPy version is: "1.26.4"
123s E   
123s E   and make sure that they are the versions you expect.
123s E   Please carefully study the documentation linked above for further help.
123s E   
123s E   Original error was: No module named 'numpy.core._multiarray_umath'
123s 
123s The above exception was the direct cause of the following exception:
123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
123s     return _bootstrap._gcd_import(name[level:], package, level)
123s tests/test_format.py:10: in <module>
123s     from emperor.format import format_emperor_autograph
123s /usr/lib/python3/dist-packages/emperor/__init__.py:12: in <module>
123s     from emperor.core import Emperor
123s /usr/lib/python3/dist-packages/emperor/core.py:14: in <module>
123s     import numpy as np
123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
123s     raise ImportError(msg) from e
123s E   ImportError: Error importing numpy: you should not try to import numpy from
123s E           its source directory; please exit the numpy source tree, and relaunch
123s E           your python interpreter from there.
123s ____________________ ERROR collecting tests/test_pandas.py _____________________
123s ImportError while importing test module '/tmp/autopkgtest.6uiH8m/autopkgtest_tmp/tests/test_pandas.py'.
123s Hint: make sure your test modules/packages have valid Python names.
123s Traceback:
123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
123s     return _bootstrap._gcd_import(name[level:], package, level)
123s tests/test_pandas.py:12: in <module>
123s     import pandas as pd
123s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
123s     raise ImportError(
123s E   ImportError: Unable to import required dependencies:
123s E   numpy: Error importing numpy: you should not try to import numpy from
123s E           its source directory; please exit the numpy source tree, and relaunch
123s E           your python interpreter from there.
123s ______ ERROR collecting tests/test_qiime_backports/test_make_3d_plots.py _______
123s ImportError while importing test module '/tmp/autopkgtest.6uiH8m/autopkgtest_tmp/tests/test_qiime_backports/test_make_3d_plots.py'.
123s Hint: make sure your test modules/packages have valid Python names.
123s Traceback:
123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
123s     from . import multiarray
123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
123s     from . import overrides
123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
123s     from numpy.core._multiarray_umath import (
123s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
123s 
123s During handling of the above exception, another exception occurred:
123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
123s     from numpy.__config__ import show as show_config
123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
123s     from numpy.core._multiarray_umath import (
123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
123s     raise ImportError(msg)
123s E   ImportError: 
123s E   
123s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
123s E   
123s E   Importing the numpy C-extensions failed. This error can happen for
123s E   many reasons, often due to issues with your setup or how NumPy was
123s E   installed.
123s E   
123s E   We have compiled some common reasons and troubleshooting tips at:
123s E   
123s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
123s E   
123s E   Please note and check the following:
123s E   
123s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
123s E     * The NumPy version is: "1.26.4"
123s E   
123s E   and make sure that they are the versions you expect.
123s E   Please carefully study the documentation linked above for further help.
123s E   
123s E   Original error was: No module named 'numpy.core._multiarray_umath'
123s 
123s The above exception was the direct cause of the following exception:
123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
123s     return _bootstrap._gcd_import(name[level:], package, level)
123s tests/test_qiime_backports/test_make_3d_plots.py:13: in <module>
123s     from numpy import array, nan
123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
123s     raise ImportError(msg) from e
123s E   ImportError: Error importing numpy: you should not try to import numpy from
123s E           its source directory; please exit the numpy source tree, and relaunch
123s E           your python interpreter from there.
123s ___________ ERROR collecting tests/test_qiime_backports/test_util.py ___________
123s ImportError while importing test module '/tmp/autopkgtest.6uiH8m/autopkgtest_tmp/tests/test_qiime_backports/test_util.py'.
123s Hint: make sure your test modules/packages have valid Python names.
123s Traceback:
123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
123s     from . import multiarray
123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
123s     from . import overrides
123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
123s     from numpy.core._multiarray_umath import (
123s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
123s 
123s During handling of the above exception, another exception occurred:
123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
123s     from numpy.__config__ import show as show_config
123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
123s     from numpy.core._multiarray_umath import (
123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
123s     raise ImportError(msg)
123s E   ImportError: 
123s E   
123s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
123s E   
123s E   Importing the numpy C-extensions failed. This error can happen for
123s E   many reasons, often due to issues with your setup or how NumPy was
123s E   installed.
123s E   
123s E   We have compiled some common reasons and troubleshooting tips at:
123s E   
123s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
123s E   
123s E   Please note and check the following:
123s E   
123s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
123s E     * The NumPy version is: "1.26.4"
123s E   
123s E   and make sure that they are the versions you expect.
123s E   Please carefully study the documentation linked above for further help.
123s E   
123s E   Original error was: No module named 'numpy.core._multiarray_umath'
123s 
123s The above exception was the direct cause of the following exception:
123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
123s     return _bootstrap._gcd_import(name[level:], package, level)
123s tests/test_qiime_backports/test_util.py:19: in <module>
123s     from numpy.testing import assert_almost_equal
123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
123s     raise ImportError(msg) from e
123s E   ImportError: Error importing numpy: you should not try to import numpy from
123s E           its source directory; please exit the numpy source tree, and relaunch
123s E           your python interpreter from there.
123s _____________________ ERROR collecting tests/test_util.py ______________________
123s ImportError while importing test module '/tmp/autopkgtest.6uiH8m/autopkgtest_tmp/tests/test_util.py'.
123s Hint: make sure your test modules/packages have valid Python names.
123s Traceback:
123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
123s     return _bootstrap._gcd_import(name[level:], package, level)
123s tests/test_util.py:15: in <module>
123s     import pandas as pd
123s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
123s     raise ImportError(
123s E   ImportError: Unable to import required dependencies:
123s E   numpy: Error importing numpy: you should not try to import numpy from
123s E           its source directory; please exit the numpy source tree, and relaunch
123s E           your python interpreter from there.
123s =============================== warnings summary ===============================
123s ../../../usr/lib/python3/dist-packages/emperor/__init__.py:9
123s   /usr/lib/python3/dist-packages/emperor/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
123s     import pkg_resources
123s 
123s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
123s =========================== short test summary info ============================
123s ERROR tests/test_core.py
123s ERROR tests/test_format.py
123s ERROR tests/test_pandas.py
123s ERROR tests/test_qiime_backports/test_make_3d_plots.py
123s ERROR tests/test_qiime_backports/test_util.py
123s ERROR tests/test_util.py
123s !!!!!!!!!!!!!!!!!!! Interrupted: 6 errors during collection !!!!!!!!!!!!!!!!!!!!
123s ========================= 1 warning, 6 errors in 0.89s =========================
123s autopkgtest [08:23:51]: test run-unit-test: -----------------------]
124s run-unit-test        FAIL non-zero exit status 2
124s autopkgtest [08:23:52]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
124s autopkgtest [08:23:52]: @@@@@@@@@@@@@@@@@@@@ summary
124s run-unit-test        FAIL non-zero exit status 2
136s nova [W] Skipping flock for amd64
136s Creating nova instance adt-plucky-amd64-emperor-20241113-082147-juju-7f2275-prod-proposed-migration-environment-20-13c3820f-22f9-4617-81e5-c8c63d362863 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...