0s autopkgtest [20:48:36]: starting date and time: 2024-11-16 20:48:36+0000 0s autopkgtest [20:48:36]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [20:48:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.veub_zmi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mpi4py,src:openmpi --apt-upgrade dolfin --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=mpi4py/4.0.0-9 openmpi/5.0.5-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-26.secgroup --name adt-plucky-amd64-dolfin-20241116-204836-juju-7f2275-prod-proposed-migration-environment-2-79af4fff-bd84-4f07-b701-a11c9b8a735b --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 49s autopkgtest [20:49:25]: testbed dpkg architecture: amd64 50s autopkgtest [20:49:26]: testbed apt version: 2.9.8 50s autopkgtest [20:49:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 51s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 51s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.7 kB] 51s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1005 kB] 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [172 kB] 51s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 51s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [819 kB] 51s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [301 kB] 51s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 51s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 51s Fetched 2636 kB in 1s (3252 kB/s) 51s Reading package lists... 53s Reading package lists... 53s Building dependency tree... 53s Reading state information... 54s Calculating upgrade... 54s The following NEW packages will be installed: 54s python3.13-gdbm 54s The following packages will be upgraded: 54s debianutils libftdi1-2 libnvme1t64 python3-gdbm 54s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 252 kB of archives. 54s After this operation, 104 kB of additional disk space will be used. 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 debianutils amd64 5.21 [92.9 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 54s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-7build1 [30.2 kB] 54s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11-2 [88.7 kB] 54s Fetched 252 kB in 0s (631 kB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 55s Preparing to unpack .../debianutils_5.21_amd64.deb ... 55s Unpacking debianutils (5.21) over (5.20) ... 55s Setting up debianutils (5.21) ... 55s Selecting previously unselected package python3.13-gdbm. 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 55s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 55s Unpacking python3.13-gdbm (3.13.0-2) ... 55s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 55s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 55s Preparing to unpack .../libftdi1-2_1.5-7build1_amd64.deb ... 55s Unpacking libftdi1-2:amd64 (1.5-7build1) over (1.5-7) ... 55s Preparing to unpack .../libnvme1t64_1.11-2_amd64.deb ... 55s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 55s Setting up libftdi1-2:amd64 (1.5-7build1) ... 55s Setting up libnvme1t64 (1.11-2) ... 55s Setting up python3.13-gdbm (3.13.0-2) ... 55s Setting up python3-gdbm:amd64 (3.12.7-1) ... 55s Processing triggers for man-db (2.13.0-1) ... 56s Processing triggers for libc-bin (2.40-1ubuntu3) ... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 57s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 58s Reading package lists... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 58s Calculating upgrade... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s autopkgtest [20:49:37]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 61s autopkgtest [20:49:37]: @@@@@@@@@@@@@@@@@@@@ apt-source dolfin 68s Get:1 http://ftpmaster.internal/ubuntu plucky/universe dolfin 2019.2.0~legacy20240219.1c52e83-10ubuntu1 (dsc) [4216 B] 68s Get:2 http://ftpmaster.internal/ubuntu plucky/universe dolfin 2019.2.0~legacy20240219.1c52e83-10ubuntu1 (tar) [10.9 MB] 68s Get:3 http://ftpmaster.internal/ubuntu plucky/universe dolfin 2019.2.0~legacy20240219.1c52e83-10ubuntu1 (diff) [51.3 kB] 68s gpgv: Signature made Tue Oct 8 20:32:28 2024 UTC 68s gpgv: using RSA key 13F9DEC79451BFBBFEE4271D715918026626D3D2 68s gpgv: Can't check signature: No public key 68s dpkg-source: warning: cannot verify inline signature for ./dolfin_2019.2.0~legacy20240219.1c52e83-10ubuntu1.dsc: no acceptable signature found 68s autopkgtest [20:49:44]: testing package dolfin version 2019.2.0~legacy20240219.1c52e83-10ubuntu1 69s autopkgtest [20:49:45]: build not needed 70s autopkgtest [20:49:46]: test test-dolfin-cpp: preparing testbed 71s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s Starting pkgProblemResolver with broken count: 2 72s Starting 2 pkgProblemResolver with broken count: 2 72s Investigating (0) libpetsc-real3.20-dev:amd64 < none -> 3.20.6+dfsg1-3ubuntu3 @un puN Ib > 72s Broken libpetsc-real3.20-dev:amd64 Depends on libpetsc3.20-dev-common:amd64 < none | 3.20.6+dfsg1-3ubuntu3 @un uH > (= 3.20.6+dfsg1-3ubuntu3) 72s Considering libpetsc3.20-dev-common:amd64 0 as a solution to libpetsc-real3.20-dev:amd64 6 72s Re-Instated libptscotch-dev:amd64 72s Re-Instated libscalapack-openmpi-dev:amd64 72s Re-Instated libscalapack-mpi-dev:amd64 72s Re-Instated libfftw3-quad3:amd64 72s Re-Instated libfftw3-bin:amd64 72s Re-Instated libfftw3-dev:amd64 72s Re-Instated libfftw3-mpi-dev:amd64 72s Re-Instated opencl-c-headers:amd64 72s Re-Instated opencl-clhpp-headers:amd64 72s Re-Instated ocl-icd-opencl-dev:amd64 72s Re-Instated libsuperlu7:amd64 72s Re-Instated libsuperlu-dev:amd64 72s Re-Instated libsuperlu-dist-dev:amd64 72s Re-Instated xorg-sgml-doctools:amd64 72s Re-Instated x11proto-dev:amd64 72s Re-Instated libxau-dev:amd64 72s Re-Instated libxdmcp-dev:amd64 72s Re-Instated xtrans-dev:amd64 72s Re-Instated libxcb1-dev:amd64 72s Re-Instated libx11-dev:amd64 72s Re-Instated libyaml-dev:amd64 72s Re-Instated libpetsc3.20-dev-common:amd64 72s Broken libpetsc-real3.20-dev:amd64 Depends on libopenmpi-dev:amd64 < none -> 5.0.5-6 @un puN > (< 4.2) 72s Considering libopenmpi-dev:amd64 13 as a solution to libpetsc-real3.20-dev:amd64 6 72s Re-Instated libopenmpi-dev:amd64 72s Broken libpetsc-real3.20-dev:amd64 Depends on libhypre-dev:amd64 < none | 2.31.0-1exp2 @un uH > (>= 2.15.1) 72s Considering libhypre-dev:amd64 0 as a solution to libpetsc-real3.20-dev:amd64 6 72s Re-Instated libhypre-dev:amd64 72s Broken libpetsc-real3.20-dev:amd64 Depends on libmumps-dev:amd64 < none | 5.6.2-2.1build3 @un uH > 72s Considering libmumps-dev:amd64 1 as a solution to libpetsc-real3.20-dev:amd64 6 72s Re-Instated libmumps-headers-dev:amd64 72s Re-Instated libmumps-dev:amd64 72s Broken libpetsc-real3.20-dev:amd64 Depends on libtrilinos-ml-dev:amd64 < none | 13.2.0-6 @un uH > 72s Considering libtrilinos-ml-dev:amd64 1 as a solution to libpetsc-real3.20-dev:amd64 6 72s Re-Instated trilinos-dev:amd64 72s Re-Instated libtrilinos-aztecoo-dev:amd64 72s Re-Instated libtrilinos-trilinosss-dev:amd64 72s Re-Instated libtrilinos-ml-dev:amd64 72s Broken libpetsc-real3.20-dev:amd64 Depends on libtrilinos-zoltan-dev:amd64 < none | 13.2.0-6 @un uH > 72s Considering libtrilinos-zoltan-dev:amd64 2 as a solution to libpetsc-real3.20-dev:amd64 6 72s Re-Instated libtrilinos-zoltan-dev:amd64 72s Broken libpetsc-real3.20-dev:amd64 Depends on valgrind-mpi:amd64 < none | 1:3.23.0-0ubuntu2 @un uH > 72s Considering valgrind-mpi:amd64 2 as a solution to libpetsc-real3.20-dev:amd64 6 72s Re-Instated libc6-dbg:amd64 72s Re-Instated valgrind:amd64 72s Re-Instated valgrind-mpi:amd64 72s Investigating (0) libpetsc64-real3.20-dev:amd64 < none -> 3.20.6+dfsg1-3ubuntu3 @un puN Ib > 72s Broken libpetsc64-real3.20-dev:amd64 Depends on libopenmpi-dev:amd64 < none -> 5.0.5-6 @un puN > (< 4.2) 72s Considering libopenmpi-dev:amd64 6 as a solution to libpetsc64-real3.20-dev:amd64 4 72s Broken libpetsc64-real3.20-dev:amd64 Depends on libhypre64m-dev:amd64 < none | 2.31.0-1exp2 @un uH > (>= 2.21.0) 72s Considering libhypre64m-dev:amd64 0 as a solution to libpetsc64-real3.20-dev:amd64 4 72s Re-Instated libopenblas64-0-pthread:amd64 72s Re-Instated libopenblas64-0:amd64 72s Re-Instated libopenblas64-pthread-dev:amd64 72s Re-Instated libopenblas64-dev:amd64 72s Re-Instated libhypre64m-dev:amd64 72s Broken libpetsc64-real3.20-dev:amd64 Depends on libmumps64-dev:amd64 < none | 5.6.2-2.1build3 @un uH > 72s Considering libmumps64-dev:amd64 1 as a solution to libpetsc64-real3.20-dev:amd64 4 72s Re-Instated libmumps64-dev:amd64 72s Done 72s Some packages could not be installed. This may mean that you have 72s requested an impossible situation or if you are using the unstable 72s distribution that some required packages have not yet been created 72s or been moved out of Incoming. 72s The following information may help to resolve the situation: 72s 72s The following packages have unmet dependencies: 72s libpetsc-real3.20-dev : Depends: libopenmpi-dev (< 4.2) but 5.0.5-6 is to be installed 72s libpetsc64-real3.20-dev : Depends: libopenmpi-dev (< 4.2) but 5.0.5-6 is to be installed 72s E: Unable to correct problems, you have held broken packages. 72s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 72s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Starting pkgProblemResolver with broken count: 0 73s Starting 2 pkgProblemResolver with broken count: 0 73s Done 73s The following additional packages will be installed: 73s autoconf automake autopoint autotools-dev build-essential chrpath cmake 73s cmake-data cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu curl 73s debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 73s docutils-common dolfin-bin dolfin-doc doxygen dwz fontconfig 73s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 73s fonts-lato fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu 73s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 73s gettext gfortran gfortran-14 gfortran-14-x86-64-linux-gnu 73s gfortran-x86-64-linux-gnu graphviz icu-devtools intltool-debian libaec-dev 73s libaec0 libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 73s libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 libblas-dev 73s libblas3 libblas64-3 libblis-pthread-dev libblis4-pthread 73s libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev 73s libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev 73s libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev 73s libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev 73s libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-math-dev 73s libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev 73s libboost-mpi1.83-dev libboost-mpi1.83.0 libboost-program-options-dev 73s libboost-program-options1.83-dev libboost-program-options1.83.0 73s libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev 73s libboost-serialization1.83-dev libboost-serialization1.83.0 73s libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev 73s libboost-thread1.83-dev libboost-thread1.83.0 libboost-timer-dev 73s libboost-timer1.83-dev libboost-timer1.83.0 libboost1.83-dev libbrotli-dev 73s libbrotli1 libbtf2 libc6-dbg libcairo2 libcamd3 libcc1-0 libccolamd3 libcdt5 73s libcgraph6 libcholmod5 libcolamd3 libcombblas2.0.0t64 libcurl3t64-gnutls 73s libcurl4-openssl-dev libcurl4t64 libcxsparse4 libdatrie1 libde265-0 73s libdebhelper-perl libdeflate0 libdolfin-dev libdolfin-dev-common 73s libdolfin2019.2t64 libdolfin64-2019.2t64 libdolfin64-dev libdrm-amdgpu1 73s libeigen3-dev libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 73s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1-dev 73s libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 73s libfftw3-mpi-dev libfftw3-mpi3 libfftw3-quad3 libfftw3-single3 73s libfile-stripnondeterminism-perl libfmt10 libfontconfig1 libgcc-14-dev 73s libgd3 libgfortran-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl 73s libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgomp1 73s libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b 73s libhdf5-mpi-dev libhdf5-openmpi-103-1t64 libhdf5-openmpi-cpp-103-1t64 73s libhdf5-openmpi-dev libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 73s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 73s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 73s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 73s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 73s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 73s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 73s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 73s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26 73s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 73s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 libmetis5 libmpc3 73s libmumps-5.7 libmumps-64pord-5.7 libmumps-dev libmumps-headers-dev 73s libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev libnl-route-3-dev 73s libnuma-dev libopenblas64-0 libopenblas64-0-pthread libopenblas64-dev 73s libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 libp11-kit-dev 73s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparpack2-dev 73s libparpack2t64 libparu1 libpathplan4 libpciaccess0 libpetsc-real-dev 73s libpetsc-real3.21 libpetsc-real3.21-dev libpetsc3.21-dev-common 73s libpetsc64-real-dev libpetsc64-real3.21 libpetsc64-real3.21-dev 73s libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 libpsl-dev 73s libpsm-infinipath1 libpsm2-2 libptscotch-7.0 libptscotch-dev 73s libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev 73s libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 73s libquadmath0 libraqm0 librbio4 librdmacm1t64 librhash1 librtmp-dev 73s libscalapack-mpi-dev libscalapack-openmpi-dev libscalapack-openmpi2.2 73s libscotch-7.0 libscotch-dev libsharpyuv0 libslepc-real3.21 73s libslepc-real3.21-dev libslepc64-real3.21 libslepc64-real3.21-dev libsm6 73s libspex3 libspqr4 libssh2-1-dev libssl-dev libstdc++-14-dev 73s libsuitesparse-dev libsuitesparse-mongoose3 libsuitesparseconfig7 73s libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 libsuperlu7 libsz2 73s libtasn1-6-dev libthai-data libthai0 libtiff6 libtool libtsan2 libubsan1 73s libucx0 libumfpack6 libunbound8 libwebp7 libx11-dev libxapian30 libxau-dev 73s libxaw7 libxcb-render0 libxcb-shm0 libxcb1-dev libxdmcp-dev libxml2 73s libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6t64 libyaml-dev 73s libzstd-dev m4 mpi-default-bin mpi-default-dev nettle-dev ocl-icd-libopencl1 73s ocl-icd-opencl-dev opencl-c-headers opencl-clhpp-headers openmpi-bin 73s openmpi-common petsc-dev petsc64-dev pkg-config pkgconf pkgconf-bin 73s po-debconf pybind11-dev python-petsc4py-doc python3 python3-alabaster 73s python3-all python3-all-dev python3-defusedxml python3-dev python3-dijitso 73s python3-docutils python3-dolfin python3-dolfin-real python3-dolfin64-real 73s python3-ffc python3-fiat python3-imagesize python3-minimal python3-mpi4py 73s python3-mpmath python3-numpy python3-packaging python3-petsc4py 73s python3-petsc4py-64-real python3-petsc4py-64-real3.21 python3-petsc4py-real 73s python3-petsc4py-real3.21 python3-pkgconfig python3-ply python3-pusimp 73s python3-pybind11 python3-roman python3-six python3-slepc4py 73s python3-slepc4py-64-real python3-slepc4py-64-real3.21 python3-slepc4py-real 73s python3-slepc4py-real3.21 python3-snowballstemmer python3-sphinx 73s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 73s python3-ufl-legacy python3.12-dev python3.13 python3.13-dev 73s python3.13-minimal sgml-base slepc-dev slepc64-dev sphinx-common 73s sphinx-rtd-theme-common swig valgrind valgrind-mpi x11-common x11proto-dev 73s xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 73s Suggested packages: 73s autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format 73s elpa-cmake-mode ninja-build cpp-doc gcc-14-locales cpp-14-doc dh-make flit 73s python3-build python3-installer python3-wheel doxygen-latex doxygen-doc 73s doxygen-gui g++-multilib g++-14-multilib gcc-14-doc gcc-multilib 73s manpages-dev flex bison gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu 73s gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc 73s gfortran-14-multilib gfortran-14-doc libcoarrays-dev gsfonts graphviz-doc 73s liblapack-doc libboost-doc libboost-graph1.83-dev libboost1.83-doc 73s libboost-container1.83-dev libboost-context1.83-dev 73s libboost-contract1.83-dev libboost-coroutine1.83-dev 73s libboost-exception1.83-dev libboost-fiber1.83-dev 73s libboost-graph-parallel1.83-dev libboost-json1.83-dev 73s libboost-locale1.83-dev libboost-log1.83-dev libboost-mpi-python1.83-dev 73s libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev 73s libboost-random1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev 73s libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev 73s libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libidn-dev 73s libkrb5-dev libldap2-dev libeigen3-doc libfftw3-doc libgd-tools gmp-doc 73s libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc 73s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 73s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 73s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 73s libhwloc-contrib-plugins icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 73s fonts-stix libjs-mathjax-doc libtool-doc libnghttp2-doc openmpi-doc 73s p11-kit-doc libpetsc-real3.21-dbg petsc3.21-doc libluminate-dev 73s libpetsc64-real3.21-dbg scalapack-doc libslepc3.21-dev-examples 73s slepc3.21-doc libssl-doc libstdc++-14-doc libsuperlu-doc gcj-jdk libx11-doc 73s xapian-tools libxcb-doc libyaml-doc m4-doc opencl-icd 73s opencl-clhpp-headers-doc libmail-box-perl pybind11-doc python-dijitso-doc 73s docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 73s texlive-latex-base texlive-latex-recommended python-mpmath-doc python3-gmpy2 73s python3-matplotlib python-numpy-doc python3-pytest python-ply-doc 73s python-slepc4py-doc python3-stemmer dvipng dvisvgm fonts-freefont-otf 73s imagemagick-6.q16 latexmk sphinx-doc tex-gyre texlive-fonts-extra 73s texlive-fonts-recommended texlive-latex-extra texlive-plain-generic 73s python-sympy-doc python-ufl-legacy-doc python3.13-venv python3.13-doc 73s binfmt-support sgml-base-doc swig-doc swig-examples valgrind-dbg kcachegrind 73s alleyoop valkyrie 73s Recommended packages: 73s python3-matplotlib fonts-liberation libarchive-cpio-perl libgts-bin 73s libheif-plugin-aomenc javascript-common libjson-xs-perl 73s libcoarrays-openmpi-dev libpetsc3.21-dev-examples ksh | mksh | pdksh | zsh 73s libgraphblas-dev libtasn1-doc libgl-dev libmail-sendmail-perl libpaper-utils 73s python3-pil isympy-common gdb 73s The following NEW packages will be installed: 73s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 73s chrpath cmake cmake-data cpp cpp-14 cpp-14-x86-64-linux-gnu 73s cpp-x86-64-linux-gnu debhelper debugedit dh-autoreconf dh-python 73s dh-strip-nondeterminism docutils-common dolfin-bin dolfin-doc doxygen dwz 73s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 73s fonts-font-awesome fonts-lato fonts-mathjax g++ g++-14 73s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 73s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext gfortran gfortran-14 73s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu graphviz icu-devtools 73s intltool-debian libaec-dev libaec0 libamd-comgr2 libamd3 libamdhip64-5 73s libann0 libaom3 libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 73s libblas-dev libblas3 libblas64-3 libblis-pthread-dev libblis4-pthread 73s libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-chrono-dev 73s libboost-chrono1.83-dev libboost-chrono1.83.0t64 libboost-date-time1.83-dev 73s libboost-date-time1.83.0 libboost-dev libboost-filesystem-dev 73s libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev 73s libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-math-dev 73s libboost-math1.83-dev libboost-math1.83.0 libboost-mpi-dev 73s libboost-mpi1.83-dev libboost-mpi1.83.0 libboost-program-options-dev 73s libboost-program-options1.83-dev libboost-program-options1.83.0 73s libboost-regex1.83-dev libboost-regex1.83.0 libboost-serialization-dev 73s libboost-serialization1.83-dev libboost-serialization1.83.0 73s libboost-system1.83-dev libboost-system1.83.0 libboost-thread-dev 73s libboost-thread1.83-dev libboost-thread1.83.0 libboost-timer-dev 73s libboost-timer1.83-dev libboost-timer1.83.0 libboost1.83-dev libbrotli-dev 73s libbtf2 libc6-dbg libcairo2 libcamd3 libcc1-0 libccolamd3 libcdt5 libcgraph6 73s libcholmod5 libcolamd3 libcombblas2.0.0t64 libcurl4-openssl-dev libcxsparse4 73s libdatrie1 libde265-0 libdebhelper-perl libdeflate0 libdolfin-dev 73s libdolfin-dev-common libdolfin2019.2t64 libdolfin64-2019.2t64 73s libdolfin64-dev libdrm-amdgpu1 libeigen3-dev libevent-2.1-7t64 libevent-dev 73s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 73s libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 73s libfftw3-long3 libfftw3-mpi-dev libfftw3-mpi3 libfftw3-quad3 73s libfftw3-single3 libfile-stripnondeterminism-perl libfmt10 libfontconfig1 73s libgcc-14-dev libgd3 libgfortran-14-dev libgfortran5 libgmp-dev 73s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 73s libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b 73s libhdf5-mpi-dev libhdf5-openmpi-103-1t64 libhdf5-openmpi-cpp-103-1t64 73s libhdf5-openmpi-dev libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 73s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 73s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 73s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 73s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 73s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 73s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 73s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 73s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26 73s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 73s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 libmetis5 libmpc3 73s libmumps-5.7 libmumps-64pord-5.7 libmumps-dev libmumps-headers-dev 73s libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev libnl-route-3-dev 73s libnuma-dev libopenblas64-0 libopenblas64-0-pthread libopenblas64-dev 73s libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 libp11-kit-dev 73s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparpack2-dev 73s libparpack2t64 libparu1 libpathplan4 libpciaccess0 libpetsc-real-dev 73s libpetsc-real3.21 libpetsc-real3.21-dev libpetsc3.21-dev-common 73s libpetsc64-real-dev libpetsc64-real3.21 libpetsc64-real3.21-dev 73s libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 libpsl-dev 73s libpsm-infinipath1 libpsm2-2 libptscotch-7.0 libptscotch-dev 73s libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 73s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libquadmath0 73s libraqm0 librbio4 librdmacm1t64 librhash1 librtmp-dev libscalapack-mpi-dev 73s libscalapack-openmpi-dev libscalapack-openmpi2.2 libscotch-7.0 libscotch-dev 73s libsharpyuv0 libslepc-real3.21 libslepc-real3.21-dev libslepc64-real3.21 73s libslepc64-real3.21-dev libsm6 libspex3 libspqr4 libssh2-1-dev libssl-dev 73s libstdc++-14-dev libsuitesparse-dev libsuitesparse-mongoose3 73s libsuitesparseconfig7 libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 73s libsuperlu7 libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool 73s libtsan2 libubsan1 libucx0 libumfpack6 libunbound8 libwebp7 libx11-dev 73s libxapian30 libxau-dev libxaw7 libxcb-render0 libxcb-shm0 libxcb1-dev 73s libxdmcp-dev libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6t64 73s libyaml-dev libzstd-dev m4 mpi-default-bin mpi-default-dev nettle-dev 73s ocl-icd-libopencl1 ocl-icd-opencl-dev opencl-c-headers opencl-clhpp-headers 73s openmpi-bin openmpi-common petsc-dev petsc64-dev pkg-config pkgconf 73s pkgconf-bin po-debconf pybind11-dev python-petsc4py-doc python3-alabaster 73s python3-all python3-all-dev python3-defusedxml python3-dev python3-dijitso 73s python3-docutils python3-dolfin python3-dolfin-real python3-dolfin64-real 73s python3-ffc python3-fiat python3-imagesize python3-mpi4py python3-mpmath 73s python3-numpy python3-packaging python3-petsc4py python3-petsc4py-64-real 73s python3-petsc4py-64-real3.21 python3-petsc4py-real python3-petsc4py-real3.21 73s python3-pkgconfig python3-ply python3-pusimp python3-pybind11 python3-roman 73s python3-six python3-slepc4py python3-slepc4py-64-real 73s python3-slepc4py-64-real3.21 python3-slepc4py-real python3-slepc4py-real3.21 73s python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme 73s python3-sphinxcontrib.jquery python3-sympy python3-ufl-legacy python3.12-dev 73s python3.13 python3.13-dev python3.13-minimal sgml-base slepc-dev slepc64-dev 73s sphinx-common sphinx-rtd-theme-common swig valgrind valgrind-mpi x11-common 73s x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 73s The following packages will be upgraded: 73s curl libbrotli1 libcurl3t64-gnutls libcurl4t64 libpython3-stdlib libxml2 73s python3 python3-minimal 73s 8 upgraded, 394 newly installed, 0 to remove and 69 not upgraded. 73s Need to get 444 MB/444 MB of archives. 73s After this operation, 1953 MB of additional disk space will be used. 73s Get:1 /tmp/autopkgtest.8KRSRk/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [1196 B] 74s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 74s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 74s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 74s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 74s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 74s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 74s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 74s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2build1 [772 kB] 74s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 74s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 74s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 74s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 74s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 74s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 74s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 74s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 75s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 75s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 75s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 75s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 75s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 75s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 75s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 75s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 75s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 75s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 75s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 75s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 75s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 75s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 75s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 76s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 76s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 76s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 76s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 76s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 76s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 76s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 76s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 76s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 chrpath amd64 0.18-1 [13.4 kB] 76s Get:42 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cmake-data all 3.31.0-1 [2290 kB] 76s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 curl amd64 8.9.1-2ubuntu3 [243 kB] 76s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libbrotli1 amd64 1.1.0-2build3 [365 kB] 76s Get:45 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcurl4t64 amd64 8.9.1-2ubuntu3 [420 kB] 76s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-2 [89.9 kB] 76s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 librhash1 amd64 1.4.5-1 [132 kB] 76s Get:48 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cmake amd64 3.31.0-1 [12.6 MB] 76s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 76s Get:50 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtool all 2.4.7-8 [166 kB] 76s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 76s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 76s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 76s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 76s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 76s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 76s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 76s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 76s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 76s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 76s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 76s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 76s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 76s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfmt10 amd64 10.1.1+ds1-4 [79.0 kB] 76s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxapian30 amd64 1.4.25-1 [718 kB] 76s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 doxygen amd64 1.9.8+ds-2ubuntu2 [5915 kB] 77s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 77s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 77s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 77s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 77s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 77s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 77s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 77s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 77s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-8ubuntu1 [965 kB] 77s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [12.5 MB] 77s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-8ubuntu1 [11.9 kB] 77s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 77s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 77s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann0 amd64 1.1.2+doc-9build1 [25.5 kB] 77s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcdt5 amd64 2.42.4-2build3 [22.3 kB] 77s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcgraph6 amd64 2.42.4-2build3 [45.1 kB] 77s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 77s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0~rc1-1 [2762 kB] 77s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.3-1 [11.5 kB] 77s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 77s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [8968 B] 77s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.3-1 [415 kB] 77s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 77s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu1 [179 kB] 77s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 77s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 77s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 77s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 77s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 77s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 77s Get:97 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblerc4 amd64 4.0.0+ds-5 [271 kB] 77s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 77s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 77s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 77s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libgd3 amd64 2.3.3-12ubuntu3 [127 kB] 77s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2build1 [161 kB] 77s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 78s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 78s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 78s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 78s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 78s Get:108 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.4.7-8 [43.9 kB] 78s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 78s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 78s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 78s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [252 kB] 78s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [51.6 kB] 78s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [29.1 kB] 78s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpathplan4 amd64 2.42.4-2build3 [24.5 kB] 78s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgvc6 amd64 2.42.4-2build3 [721 kB] 78s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgvpr2 amd64 2.42.4-2build3 [189 kB] 78s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblab-gamut1 amd64 2.42.4-2build3 [1898 kB] 78s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 78s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 78s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 78s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 78s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 78s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 78s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 graphviz amd64 2.42.4-2build3 [649 kB] 78s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 74.2-1ubuntu4 [213 kB] 78s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 78s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 79s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 80s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 80s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 80s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 80s Get:133 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libhsakmt1 amd64 6.1.2+ds-1 [65.2 kB] 80s Get:134 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libhsa-runtime64-1 amd64 6.1.2-2 [563 kB] 80s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 80s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 80s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblis4-pthread amd64 0.9.0-1 [4669 kB] 81s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 81s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-1.1ubuntu1 [107 kB] 81s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-3build2 [172 kB] 81s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblis-pthread-dev amd64 0.9.0-1 [2550 kB] 81s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-3build2 [5249 kB] 81s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2-dev amd64 3.9.1-1.1ubuntu1 [123 kB] 81s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas64-3 amd64 3.12.0-3build2 [231 kB] 81s Get:145 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-3.2ubuntu3 [10.7 MB] 82s Get:146 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2ubuntu3 [240 kB] 82s Get:147 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2ubuntu3 [235 kB] 82s Get:148 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2ubuntu3 [245 kB] 82s Get:149 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2ubuntu3 [247 kB] 82s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-chrono-dev amd64 1.83.0.2ubuntu1 [4832 B] 82s Get:151 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2ubuntu3 [236 kB] 82s Get:152 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2ubuntu3 [343 kB] 82s Get:153 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2ubuntu3 [387 kB] 82s Get:154 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2ubuntu3 [239 kB] 82s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 82s Get:156 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2ubuntu3 [286 kB] 82s Get:157 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-system1.83.0 amd64 1.83.0-3.2ubuntu3 [237 kB] 82s Get:158 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-system1.83-dev amd64 1.83.0-3.2ubuntu3 [231 kB] 82s Get:159 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2ubuntu3 [304 kB] 82s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-filesystem-dev amd64 1.83.0.2ubuntu1 [4256 B] 82s Get:161 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2ubuntu3 [342 kB] 82s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 74.2-1ubuntu4 [11.9 MB] 83s Get:163 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2ubuntu3 [359 kB] 83s Get:164 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3.2ubuntu3 [260 kB] 83s Get:165 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2ubuntu3 [264 kB] 83s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-iostreams-dev amd64 1.83.0.2ubuntu1 [4212 B] 83s Get:167 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-math1.83.0 amd64 1.83.0-3.2ubuntu3 [442 kB] 83s Get:168 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-math1.83-dev amd64 1.83.0-3.2ubuntu3 [607 kB] 83s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-math-dev amd64 1.83.0.2ubuntu1 [4434 B] 83s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 83s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 83s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 83s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 83s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 83s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 83s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 83s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 83s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 83s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 83s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 83s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 83s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 83s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 83s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 83s Get:185 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 83s Get:186 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2ubuntu3 [271 kB] 83s Get:187 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-common all 5.0.5-6 [95.6 kB] 83s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-dev amd64 3.7.0-0.3build2 [99.9 kB] 83s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-dev amd64 3.7.0-0.3build2 [216 kB] 83s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 libibverbs-dev amd64 52.0-2ubuntu1 [682 kB] 83s Get:191 http://ftpmaster.internal/ubuntu plucky/main amd64 libnuma-dev amd64 2.0.18-1build1 [37.0 kB] 83s Get:192 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl-dev amd64 2.4.7-8 [172 kB] 83s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-dev amd64 2.11.2-1 [286 kB] 83s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 83s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10 [64.2 kB] 83s Get:196 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10 [15.7 kB] 83s Get:197 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-dev amd64 2.1.12-stable-10 [274 kB] 83s Get:198 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 84s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix-dev amd64 5.0.3-2 [4042 kB] 84s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 84s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 84s Get:202 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-bin amd64 5.0.5-6 [169 kB] 84s Get:203 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi-dev amd64 5.0.5-6 [1085 kB] 84s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-dev amd64 1.17 [3106 B] 84s Get:205 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-mpi1.83-dev amd64 1.83.0-3.2ubuntu3 [296 kB] 84s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-mpi-dev amd64 1.83.0.2ubuntu1 [4304 B] 84s Get:207 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2ubuntu3 [322 kB] 85s Get:208 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2ubuntu3 [390 kB] 85s Get:209 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-program-options-dev amd64 1.83.0.2ubuntu1 [4250 B] 85s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-serialization-dev amd64 1.83.0.2ubuntu1 [4442 B] 85s Get:211 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2ubuntu3 [278 kB] 85s Get:212 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-thread1.83-dev amd64 1.83.0-3.2ubuntu3 [281 kB] 85s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-thread-dev amd64 1.83.0.2ubuntu1 [4246 B] 85s Get:214 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-timer1.83.0 amd64 1.83.0-3.2ubuntu3 [241 kB] 85s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-timer1.83-dev amd64 1.83.0-3.2ubuntu3 [236 kB] 85s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-timer-dev amd64 1.83.0.2ubuntu1 [4352 B] 85s Get:217 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libbrotli-dev amd64 1.1.0-2build3 [381 kB] 85s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [15.1 kB] 85s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [27.6 kB] 85s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [27.5 kB] 85s Get:221 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 85s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [876 kB] 85s Get:223 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcombblas2.0.0t64 amd64 2.0.0-6 [249 kB] 85s Get:224 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcurl3t64-gnutls amd64 8.9.1-2ubuntu3 [412 kB] 85s Get:225 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 85s Get:226 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 85s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 85s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 85s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 85s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 85s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2ubuntu7 [10.0 kB] 85s Get:232 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2ubuntu7 [341 kB] 85s Get:233 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.20.0-1ubuntu2.1 [447 kB] 85s Get:234 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.8-2ubuntu1 [24.3 kB] 85s Get:235 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2ubuntu1 [24.5 kB] 85s Get:236 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu1 [22.7 kB] 85s Get:237 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.19.0-3build1 [90.5 kB] 85s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10-1 [1172 kB] 85s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.8-2ubuntu1 [1108 kB] 85s Get:240 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 85s Get:241 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.3.1-2ubuntu2 [2686 kB] 85s Get:242 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 85s Get:243 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [371 kB] 85s Get:244 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcurl4-openssl-dev amd64 8.9.1-2ubuntu3 [512 kB] 85s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [83.9 kB] 85s Get:246 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [196 kB] 85s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 85s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1337 kB] 85s Get:249 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1 [839 kB] 85s Get:250 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-long3 amd64 3.3.10-2fakesync1 [377 kB] 85s Get:251 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-single3 amd64 3.3.10-2fakesync1 [871 kB] 85s Get:252 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libfftw3-mpi3 amd64 3.3.10-2fakesync1 [52.6 kB] 85s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmetis5 amd64 5.1.0.dfsg-7build3 [181 kB] 85s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 libptscotch-7.0 amd64 7.0.5-1ubuntu1 [681 kB] 85s Get:255 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5 [771 kB] 86s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre-2.31.0 amd64 2.31.0-1exp2 [1762 kB] 86s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 libklu2 amd64 1:7.8.3+dfsg-2 [98.9 kB] 86s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 86s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1ubuntu2 [1758 kB] 86s Get:260 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-5.7 amd64 5.7.3-3 [2264 kB] 86s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [169 kB] 86s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [220 kB] 86s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [337 kB] 86s Get:264 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc-real3.21 amd64 3.21.6+dfsg1-2ubuntu2 [7917 kB] 86s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 libparpack2t64 amd64 3.9.1-1.1ubuntu1 [98.9 kB] 86s Get:266 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc-real3.21 amd64 3.21.2+dfsg1-2 [1322 kB] 86s Get:267 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [2055 kB] 86s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-0-pthread amd64 0.3.28+ds-3 [8558 kB] 87s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack64-3 amd64 3.12.0-3build2 [2525 kB] 87s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre64m-2.31.0 amd64 2.31.0-1exp2 [1621 kB] 87s Get:271 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-64pord-5.7 amd64 5.7.3-3 [2262 kB] 87s Get:272 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc64-real3.21 amd64 3.21.6+dfsg1-2ubuntu2 [7793 kB] 87s Get:273 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc64-real3.21 amd64 3.21.2+dfsg1-2 [1318 kB] 87s Get:274 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin64-2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [2053 kB] 87s Get:275 http://ftpmaster.internal/ubuntu plucky/main amd64 pkg-config amd64 1.8.1-4 [7362 B] 87s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 libeigen3-dev all 3.4.0-4build1 [1055 kB] 87s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-fortran-102t64 amd64 1.10.10+repack-4ubuntu3 [84.7 kB] 88s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.7 kB] 88s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-hl-fortran-100t64 amd64 1.10.10+repack-4ubuntu3 [31.3 kB] 88s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-cpp-103-1t64 amd64 1.10.10+repack-4ubuntu3 [124 kB] 88s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-hl-cpp-100t64 amd64 1.10.10+repack-4ubuntu3 [11.2 kB] 88s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 88s Get:283 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu1 [324 kB] 88s Get:284 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 88s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 88s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-dev amd64 1.10.10+repack-4ubuntu3 [2854 kB] 88s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-mpi-dev amd64 1.10.10+repack-4ubuntu3 [4616 B] 88s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 libldl3 amd64 1:7.8.3+dfsg-2 [14.4 kB] 88s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [37.8 kB] 88s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 librbio4 amd64 1:7.8.3+dfsg-2 [30.5 kB] 88s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspex3 amd64 1:7.8.3+dfsg-2 [49.1 kB] 88s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 libparu1 amd64 1:7.8.3+dfsg-2 [57.1 kB] 88s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1939 kB] 88s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscotch-7.0 amd64 7.0.5-1ubuntu1 [449 kB] 88s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscotch-dev amd64 7.0.5-1ubuntu1 [1607 kB] 88s Get:296 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2build1 [786 kB] 88s Get:297 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 88s Get:298 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-mpi4py amd64 4.0.0-9 [1686 kB] 88s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-4 [24.3 kB] 88s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 88s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 89s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fiat all 2019.2.0~git20210419.7d418fa-5 [69.2 kB] 89s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufl-legacy all 1:2022.3.0-3 [154 kB] 89s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ffc all 2019.2.0~legacy20230509.35df986-3 [227 kB] 89s Get:305 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 90s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 libptscotch-dev amd64 7.0.5-1ubuntu1 [1382 kB] 90s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-openmpi-dev amd64 2.2.1-3.1ubuntu2 [7504 B] 90s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-mpi-dev amd64 2.2.1-3.1ubuntu2 [2324 B] 90s Get:309 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-quad3 amd64 3.3.10-2fakesync1 [669 kB] 90s Get:310 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-bin amd64 3.3.10-2fakesync1 [39.3 kB] 90s Get:311 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-dev amd64 3.3.10-2fakesync1 [2345 kB] 90s Get:312 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libfftw3-mpi-dev amd64 3.3.10-2fakesync1 [59.8 kB] 90s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 opencl-c-headers all 3.0~2024.05.08-1 [47.6 kB] 90s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 opencl-clhpp-headers all 3.0~2024.05.08-1ubuntu1 [50.9 kB] 90s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-opencl-dev amd64 2.3.2-1build1 [2448 B] 90s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [20.8 kB] 90s Get:317 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5 [1096 kB] 90s Get:318 http://ftpmaster.internal/ubuntu plucky/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] 90s Get:319 http://ftpmaster.internal/ubuntu plucky/main amd64 x11proto-dev all 2024.1-1 [606 kB] 90s Get:320 http://ftpmaster.internal/ubuntu plucky/main amd64 libxau-dev amd64 1:1.0.11-1 [9798 B] 90s Get:321 http://ftpmaster.internal/ubuntu plucky/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu6 [26.5 kB] 90s Get:322 http://ftpmaster.internal/ubuntu plucky/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB] 90s Get:323 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb1-dev amd64 1.17.0-2 [86.4 kB] 90s Get:324 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-dev amd64 2:1.8.10-2 [777 kB] 90s Get:325 http://ftpmaster.internal/ubuntu plucky/main amd64 libyaml-dev amd64 0.2.5-1build1 [62.2 kB] 90s Get:326 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc3.21-dev-common all 3.21.6+dfsg1-2ubuntu2 [316 kB] 90s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre-dev amd64 2.31.0-1exp2 [2100 kB] 90s Get:328 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-headers-dev all 5.7.3-3 [21.8 kB] 90s Get:329 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-dev amd64 5.7.3-3 [2210 kB] 90s Get:330 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dbg amd64 2.40-1ubuntu3 [7627 kB] 90s Get:331 http://ftpmaster.internal/ubuntu plucky/main amd64 valgrind amd64 1:3.23.0-0ubuntu2 [14.7 MB] 91s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 valgrind-mpi amd64 1:3.23.0-0ubuntu2 [44.2 kB] 91s Get:333 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc-real3.21-dev amd64 3.21.6+dfsg1-2ubuntu2 [7112 kB] 91s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 libparpack2-dev amd64 3.9.1-1.1ubuntu1 [113 kB] 91s Get:335 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc-real3.21-dev amd64 3.21.2+dfsg1-2 [6002 kB] 91s Get:336 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin-dev amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [14.8 kB] 91s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-0 amd64 0.3.28+ds-3 [5040 B] 91s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-pthread-dev amd64 0.3.28+ds-3 [6419 kB] 91s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-dev amd64 0.3.28+ds-3 [5106 B] 91s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre64m-dev amd64 2.31.0-1exp2 [1929 kB] 91s Get:341 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps64-dev amd64 5.7.3-3 [2208 kB] 91s Get:342 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc64-real3.21-dev amd64 3.21.6+dfsg1-2ubuntu2 [7121 kB] 91s Get:343 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc64-real3.21-dev amd64 3.21.2+dfsg1-2 [6028 kB] 92s Get:344 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin64-dev amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [6814 B] 92s Get:345 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 92s Get:346 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 92s Get:347 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 92s Get:348 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 92s Get:349 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc-real-dev all 3.21.6+dfsg1-2ubuntu2 [3922 B] 92s Get:350 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc64-real-dev all 3.21.6+dfsg1-2ubuntu2 [3938 B] 92s Get:351 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 92s Get:352 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 92s Get:353 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 92s Get:354 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 92s Get:355 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 92s Get:356 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 92s Get:357 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 petsc64-dev all 3.21.6+dfsg1-2ubuntu2 [3962 B] 92s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybind11-dev all 2.13.6-1 [168 kB] 92s Get:359 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 92s Get:360 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-petsc4py-doc all 3.21.6-2ubuntu2 [747 kB] 92s Get:361 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 92s Get:362 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 92s Get:363 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 92s Get:364 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 92s Get:365 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 92s Get:366 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 92s Get:367 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 92s Get:368 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 92s Get:369 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 92s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 swig amd64 4.2.1-1 [1182 kB] 92s Get:371 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-real3.21 amd64 3.21.6-2ubuntu2 [2219 kB] 92s Get:372 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-real all 3.21.6-2ubuntu2 [2658 B] 92s Get:373 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-real3.21 amd64 3.21.2-1ubuntu2 [544 kB] 92s Get:374 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-real all 3.21.2-1ubuntu2 [2574 B] 92s Get:375 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dolfin-real amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [1248 kB] 92s Get:376 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-64-real3.21 amd64 3.21.6-2ubuntu2 [2178 kB] 92s Get:377 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-64-real all 3.21.6-2ubuntu2 [2510 B] 92s Get:378 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-64-real3.21 amd64 3.21.2-1ubuntu2 [540 kB] 92s Get:379 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-64-real all 3.21.2-1ubuntu2 [2556 B] 92s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pkgconfig all 1.5.5-2 [7888 B] 92s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybind11 all 2.13.6-1 [176 kB] 92s Get:382 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dolfin64-real amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [1260 kB] 92s Get:383 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 92s Get:384 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 92s Get:385 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ply all 3.11-7 [45.4 kB] 92s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pusimp all 0.1.1-1 [10.3 kB] 92s Get:387 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 92s Get:388 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 92s Get:389 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 92s Get:390 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 92s Get:391 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 92s Get:392 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 92s Get:393 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 92s Get:394 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 slepc64-dev amd64 3.21.2+dfsg1-2 [2230 B] 92s Get:395 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py all 3.21.6-2ubuntu2 [2308 B] 92s Get:396 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py all 3.21.2-1ubuntu2 [2248 B] 92s Get:397 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dolfin amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [26.9 kB] 92s Get:398 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 dolfin-doc all 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [13.0 MB] 93s Get:399 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 dolfin-bin all 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [12.1 kB] 93s Get:400 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 petsc-dev all 3.21.6+dfsg1-2ubuntu2 [7482 B] 93s Get:401 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 slepc-dev amd64 3.21.2+dfsg1-2 [4824 B] 93s Get:402 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 93s Fetched 444 MB in 19s (23.0 MB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 93s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 93s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 93s Setting up python3-minimal (3.12.7-1) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 94s Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... 94s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 94s Preparing to unpack .../001-libpython3-stdlib_3.12.7-1_amd64.deb ... 94s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 94s Selecting previously unselected package fonts-lato. 94s Preparing to unpack .../002-fonts-lato_2.015-1_all.deb ... 94s Unpacking fonts-lato (2.015-1) ... 94s Selecting previously unselected package libpython3.13-minimal:amd64. 94s Preparing to unpack .../003-libpython3.13-minimal_3.13.0-2_amd64.deb ... 94s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 94s Selecting previously unselected package python3.13-minimal. 94s Preparing to unpack .../004-python3.13-minimal_3.13.0-2_amd64.deb ... 94s Unpacking python3.13-minimal (3.13.0-2) ... 94s Selecting previously unselected package sgml-base. 94s Preparing to unpack .../005-sgml-base_1.31_all.deb ... 94s Unpacking sgml-base (1.31) ... 94s Preparing to unpack .../006-libxml2_2.12.7+dfsg+really2.9.14-0.2build1_amd64.deb ... 94s Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) over (2.12.7+dfsg-3) ... 94s Selecting previously unselected package m4. 94s Preparing to unpack .../007-m4_1.4.19-4build1_amd64.deb ... 94s Unpacking m4 (1.4.19-4build1) ... 94s Selecting previously unselected package autoconf. 94s Preparing to unpack .../008-autoconf_2.72-3_all.deb ... 94s Unpacking autoconf (2.72-3) ... 94s Selecting previously unselected package autotools-dev. 94s Preparing to unpack .../009-autotools-dev_20220109.1_all.deb ... 94s Unpacking autotools-dev (20220109.1) ... 94s Selecting previously unselected package automake. 94s Preparing to unpack .../010-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 94s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 94s Selecting previously unselected package autopoint. 94s Preparing to unpack .../011-autopoint_0.22.5-2_all.deb ... 94s Unpacking autopoint (0.22.5-2) ... 94s Selecting previously unselected package libisl23:amd64. 94s Preparing to unpack .../012-libisl23_0.27-1_amd64.deb ... 94s Unpacking libisl23:amd64 (0.27-1) ... 94s Selecting previously unselected package libmpc3:amd64. 94s Preparing to unpack .../013-libmpc3_1.3.1-1build2_amd64.deb ... 94s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 94s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 94s Preparing to unpack .../014-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 94s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package cpp-14. 95s Preparing to unpack .../015-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package cpp-x86-64-linux-gnu. 95s Preparing to unpack .../016-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 95s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 95s Selecting previously unselected package cpp. 95s Preparing to unpack .../017-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 95s Unpacking cpp (4:14.1.0-2ubuntu1) ... 95s Selecting previously unselected package libcc1-0:amd64. 95s Preparing to unpack .../018-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libgomp1:amd64. 95s Preparing to unpack .../019-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libitm1:amd64. 95s Preparing to unpack .../020-libitm1_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libasan8:amd64. 95s Preparing to unpack .../021-libasan8_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package liblsan0:amd64. 95s Preparing to unpack .../022-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libtsan2:amd64. 95s Preparing to unpack .../023-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libubsan1:amd64. 95s Preparing to unpack .../024-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libhwasan0:amd64. 95s Preparing to unpack .../025-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libquadmath0:amd64. 95s Preparing to unpack .../026-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package libgcc-14-dev:amd64. 95s Preparing to unpack .../027-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 95s Preparing to unpack .../028-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package gcc-14. 95s Preparing to unpack .../029-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 95s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 95s Selecting previously unselected package gcc-x86-64-linux-gnu. 95s Preparing to unpack .../030-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 95s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 95s Selecting previously unselected package gcc. 95s Preparing to unpack .../031-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 95s Unpacking gcc (4:14.1.0-2ubuntu1) ... 96s Selecting previously unselected package libstdc++-14-dev:amd64. 96s Preparing to unpack .../032-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package g++-14-x86-64-linux-gnu. 96s Preparing to unpack .../033-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package g++-14. 96s Preparing to unpack .../034-g++-14_14.2.0-8ubuntu1_amd64.deb ... 96s Unpacking g++-14 (14.2.0-8ubuntu1) ... 96s Selecting previously unselected package g++-x86-64-linux-gnu. 96s Preparing to unpack .../035-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 96s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 96s Selecting previously unselected package g++. 96s Preparing to unpack .../036-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 96s Unpacking g++ (4:14.1.0-2ubuntu1) ... 96s Selecting previously unselected package build-essential. 96s Preparing to unpack .../037-build-essential_12.10ubuntu1_amd64.deb ... 96s Unpacking build-essential (12.10ubuntu1) ... 96s Selecting previously unselected package chrpath. 96s Preparing to unpack .../038-chrpath_0.18-1_amd64.deb ... 96s Unpacking chrpath (0.18-1) ... 96s Selecting previously unselected package cmake-data. 96s Preparing to unpack .../039-cmake-data_3.31.0-1_all.deb ... 96s Unpacking cmake-data (3.31.0-1) ... 97s Preparing to unpack .../040-curl_8.9.1-2ubuntu3_amd64.deb ... 97s Unpacking curl (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ... 97s Preparing to unpack .../041-libbrotli1_1.1.0-2build3_amd64.deb ... 97s Unpacking libbrotli1:amd64 (1.1.0-2build3) over (1.1.0-2build2) ... 97s Preparing to unpack .../042-libcurl4t64_8.9.1-2ubuntu3_amd64.deb ... 97s Unpacking libcurl4t64:amd64 (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ... 97s Selecting previously unselected package libjsoncpp26:amd64. 97s Preparing to unpack .../043-libjsoncpp26_1.9.6-2_amd64.deb ... 97s Unpacking libjsoncpp26:amd64 (1.9.6-2) ... 97s Selecting previously unselected package librhash1:amd64. 97s Preparing to unpack .../044-librhash1_1.4.5-1_amd64.deb ... 97s Unpacking librhash1:amd64 (1.4.5-1) ... 97s Selecting previously unselected package cmake. 97s Preparing to unpack .../045-cmake_3.31.0-1_amd64.deb ... 97s Unpacking cmake (3.31.0-1) ... 97s Selecting previously unselected package libdebhelper-perl. 97s Preparing to unpack .../046-libdebhelper-perl_13.20ubuntu1_all.deb ... 97s Unpacking libdebhelper-perl (13.20ubuntu1) ... 97s Selecting previously unselected package libtool. 97s Preparing to unpack .../047-libtool_2.4.7-8_all.deb ... 97s Unpacking libtool (2.4.7-8) ... 97s Selecting previously unselected package dh-autoreconf. 97s Preparing to unpack .../048-dh-autoreconf_20_all.deb ... 97s Unpacking dh-autoreconf (20) ... 97s Selecting previously unselected package libarchive-zip-perl. 97s Preparing to unpack .../049-libarchive-zip-perl_1.68-1_all.deb ... 97s Unpacking libarchive-zip-perl (1.68-1) ... 97s Selecting previously unselected package libfile-stripnondeterminism-perl. 97s Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 97s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 97s Selecting previously unselected package dh-strip-nondeterminism. 97s Preparing to unpack .../051-dh-strip-nondeterminism_1.14.0-1_all.deb ... 97s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 97s Selecting previously unselected package debugedit. 97s Preparing to unpack .../052-debugedit_1%3a5.1-1_amd64.deb ... 97s Unpacking debugedit (1:5.1-1) ... 97s Selecting previously unselected package dwz. 97s Preparing to unpack .../053-dwz_0.15-1build6_amd64.deb ... 97s Unpacking dwz (0.15-1build6) ... 97s Selecting previously unselected package gettext. 97s Preparing to unpack .../054-gettext_0.22.5-2_amd64.deb ... 97s Unpacking gettext (0.22.5-2) ... 97s Selecting previously unselected package intltool-debian. 97s Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ... 97s Unpacking intltool-debian (0.35.0+20060710.6) ... 97s Selecting previously unselected package po-debconf. 97s Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... 97s Unpacking po-debconf (1.0.21+nmu1) ... 97s Selecting previously unselected package debhelper. 97s Preparing to unpack .../057-debhelper_13.20ubuntu1_all.deb ... 97s Unpacking debhelper (13.20ubuntu1) ... 97s Selecting previously unselected package dh-python. 97s Preparing to unpack .../058-dh-python_6.20241024_all.deb ... 97s Unpacking dh-python (6.20241024) ... 97s Selecting previously unselected package xml-core. 97s Preparing to unpack .../059-xml-core_0.19_all.deb ... 97s Unpacking xml-core (0.19) ... 97s Selecting previously unselected package docutils-common. 97s Preparing to unpack .../060-docutils-common_0.21.2+dfsg-2_all.deb ... 97s Unpacking docutils-common (0.21.2+dfsg-2) ... 98s Selecting previously unselected package libfmt10:amd64. 98s Preparing to unpack .../061-libfmt10_10.1.1+ds1-4_amd64.deb ... 98s Unpacking libfmt10:amd64 (10.1.1+ds1-4) ... 98s Selecting previously unselected package libxapian30:amd64. 98s Preparing to unpack .../062-libxapian30_1.4.25-1_amd64.deb ... 98s Unpacking libxapian30:amd64 (1.4.25-1) ... 98s Selecting previously unselected package doxygen. 98s Preparing to unpack .../063-doxygen_1.9.8+ds-2ubuntu2_amd64.deb ... 98s Unpacking doxygen (1.9.8+ds-2ubuntu2) ... 98s Selecting previously unselected package fonts-dejavu-mono. 98s Preparing to unpack .../064-fonts-dejavu-mono_2.37-8_all.deb ... 98s Unpacking fonts-dejavu-mono (2.37-8) ... 98s Selecting previously unselected package fonts-dejavu-core. 98s Preparing to unpack .../065-fonts-dejavu-core_2.37-8_all.deb ... 98s Unpacking fonts-dejavu-core (2.37-8) ... 98s Selecting previously unselected package fontconfig-config. 98s Preparing to unpack .../066-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 98s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 98s Selecting previously unselected package libfontconfig1:amd64. 98s Preparing to unpack .../067-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 98s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 98s Selecting previously unselected package fontconfig. 98s Preparing to unpack .../068-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 98s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 98s Selecting previously unselected package fonts-font-awesome. 98s Preparing to unpack .../069-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 98s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 98s Selecting previously unselected package fonts-mathjax. 98s Preparing to unpack .../070-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 98s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 98s Selecting previously unselected package libgfortran5:amd64. 98s Preparing to unpack .../071-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package libgfortran-14-dev:amd64. 98s Preparing to unpack .../072-libgfortran-14-dev_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking libgfortran-14-dev:amd64 (14.2.0-8ubuntu1) ... 98s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 98s Preparing to unpack .../073-gfortran-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package gfortran-14. 99s Preparing to unpack .../074-gfortran-14_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking gfortran-14 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package gfortran-x86-64-linux-gnu. 99s Preparing to unpack .../075-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package gfortran. 99s Preparing to unpack .../076-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package libann0. 99s Preparing to unpack .../077-libann0_1.1.2+doc-9build1_amd64.deb ... 99s Unpacking libann0 (1.1.2+doc-9build1) ... 99s Selecting previously unselected package libcdt5:amd64. 99s Preparing to unpack .../078-libcdt5_2.42.4-2build3_amd64.deb ... 99s Unpacking libcdt5:amd64 (2.42.4-2build3) ... 99s Selecting previously unselected package libcgraph6:amd64. 99s Preparing to unpack .../079-libcgraph6_2.42.4-2build3_amd64.deb ... 99s Unpacking libcgraph6:amd64 (2.42.4-2build3) ... 99s Selecting previously unselected package libsharpyuv0:amd64. 99s Preparing to unpack .../080-libsharpyuv0_1.4.0-0.1_amd64.deb ... 99s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 99s Selecting previously unselected package libaom3:amd64. 99s Preparing to unpack .../081-libaom3_3.11.0~rc1-1_amd64.deb ... 99s Unpacking libaom3:amd64 (3.11.0~rc1-1) ... 99s Selecting previously unselected package libheif-plugin-aomdec:amd64. 99s Preparing to unpack .../082-libheif-plugin-aomdec_1.19.3-1_amd64.deb ... 99s Unpacking libheif-plugin-aomdec:amd64 (1.19.3-1) ... 99s Selecting previously unselected package libde265-0:amd64. 99s Preparing to unpack .../083-libde265-0_1.0.15-1build4_amd64.deb ... 99s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 99s Selecting previously unselected package libheif-plugin-libde265:amd64. 99s Preparing to unpack .../084-libheif-plugin-libde265_1.19.3-1_amd64.deb ... 99s Unpacking libheif-plugin-libde265:amd64 (1.19.3-1) ... 99s Selecting previously unselected package libheif1:amd64. 99s Preparing to unpack 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libpciaccess0:amd64. 105s Preparing to unpack .../174-libpciaccess0_0.17-3build1_amd64.deb ... 105s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 105s Selecting previously unselected package libxnvctrl0:amd64. 105s Preparing to unpack .../175-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 105s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 105s Selecting previously unselected package ocl-icd-libopencl1:amd64. 105s Preparing to unpack .../176-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 105s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 105s Selecting previously unselected package libhwloc-plugins:amd64. 105s Preparing to unpack .../177-libhwloc-plugins_2.11.2-1_amd64.deb ... 105s Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... 105s Selecting previously unselected package libpmix2t64:amd64. 105s Preparing to unpack .../178-libpmix2t64_5.0.3-2_amd64.deb ... 105s Unpacking libpmix2t64:amd64 (5.0.3-2) ... 105s Selecting previously unselected package libibumad3:amd64. 105s 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libevent-dev. 106s Preparing to unpack .../194-libevent-dev_2.1.12-stable-10_amd64.deb ... 106s Unpacking libevent-dev (2.1.12-stable-10) ... 106s Selecting previously unselected package zlib1g-dev:amd64. 106s Preparing to unpack .../195-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 106s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 106s Selecting previously unselected package libpmix-dev:amd64. 106s Preparing to unpack .../196-libpmix-dev_5.0.3-2_amd64.deb ... 106s Unpacking libpmix-dev:amd64 (5.0.3-2) ... 106s Selecting previously unselected package libjs-jquery. 106s Preparing to unpack .../197-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 106s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 106s Selecting previously unselected package libjs-jquery-ui. 106s Preparing to unpack .../198-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 106s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 106s Selecting previously unselected package openmpi-bin. 106s Preparing 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libboost-timer1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 107s Selecting previously unselected package libboost-timer-dev:amd64. 107s Preparing to unpack .../213-libboost-timer-dev_1.83.0.2ubuntu1_amd64.deb ... 107s Unpacking libboost-timer-dev:amd64 (1.83.0.2ubuntu1) ... 107s Selecting previously unselected package libbrotli-dev:amd64. 107s Preparing to unpack .../214-libbrotli-dev_1.1.0-2build3_amd64.deb ... 107s Unpacking libbrotli-dev:amd64 (1.1.0-2build3) ... 107s Selecting previously unselected package libbtf2:amd64. 107s Preparing to unpack .../215-libbtf2_1%3a7.8.3+dfsg-2_amd64.deb ... 107s Unpacking libbtf2:amd64 (1:7.8.3+dfsg-2) ... 107s Selecting previously unselected package libcamd3:amd64. 107s Preparing to unpack .../216-libcamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 107s Unpacking libcamd3:amd64 (1:7.8.3+dfsg-2) ... 107s Selecting previously unselected package libccolamd3:amd64. 107s Preparing to unpack .../217-libccolamd3_1%3a7.8.3+dfsg-2_amd64.deb ... 107s Unpacking 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previously unselected package libpkgconf3:amd64. 107s Preparing to unpack .../223-libpkgconf3_1.8.1-4_amd64.deb ... 107s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 107s Selecting previously unselected package pkgconf-bin. 107s Preparing to unpack .../224-pkgconf-bin_1.8.1-4_amd64.deb ... 107s Unpacking pkgconf-bin (1.8.1-4) ... 107s Selecting previously unselected package pkgconf:amd64. 107s Preparing to unpack .../225-pkgconf_1.8.1-4_amd64.deb ... 107s Unpacking pkgconf:amd64 (1.8.1-4) ... 107s Selecting previously unselected package libnghttp2-dev:amd64. 107s Preparing to unpack .../226-libnghttp2-dev_1.64.0-1_amd64.deb ... 107s Unpacking libnghttp2-dev:amd64 (1.64.0-1) ... 107s Selecting previously unselected package libpsl-dev:amd64. 107s Preparing to unpack .../227-libpsl-dev_0.21.2-1.1build1_amd64.deb ... 107s Unpacking libpsl-dev:amd64 (0.21.2-1.1build1) ... 107s Selecting previously unselected package libgmpxx4ldbl:amd64. 107s Preparing to unpack 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package libp11-kit-dev:amd64. 108s Preparing to unpack .../233-libp11-kit-dev_0.25.5-2ubuntu1_amd64.deb ... 108s Unpacking libp11-kit-dev:amd64 (0.25.5-2ubuntu1) ... 108s Selecting previously unselected package libtasn1-6-dev:amd64. 108s Preparing to unpack .../234-libtasn1-6-dev_4.19.0-3build1_amd64.deb ... 108s Unpacking libtasn1-6-dev:amd64 (4.19.0-3build1) ... 108s Selecting previously unselected package nettle-dev:amd64. 108s Preparing to unpack .../235-nettle-dev_3.10-1_amd64.deb ... 108s Unpacking nettle-dev:amd64 (3.10-1) ... 108s Selecting previously unselected package libgnutls28-dev:amd64. 108s Preparing to unpack .../236-libgnutls28-dev_3.8.8-2ubuntu1_amd64.deb ... 108s Unpacking libgnutls28-dev:amd64 (3.8.8-2ubuntu1) ... 108s Selecting previously unselected package librtmp-dev:amd64. 108s Preparing to unpack .../237-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 108s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 108s Selecting previously unselected package libssl-dev:amd64. 108s Preparing to unpack .../238-libssl-dev_3.3.1-2ubuntu2_amd64.deb ... 108s Unpacking libssl-dev:amd64 (3.3.1-2ubuntu2) ... 108s Selecting previously unselected package libssh2-1-dev:amd64. 108s Preparing to unpack .../239-libssh2-1-dev_1.11.1-1_amd64.deb ... 108s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 108s Selecting previously unselected package libzstd-dev:amd64. 108s Preparing to unpack .../240-libzstd-dev_1.5.6+dfsg-1_amd64.deb ... 108s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-1) ... 108s Selecting previously unselected package libcurl4-openssl-dev:amd64. 108s Preparing to unpack .../241-libcurl4-openssl-dev_8.9.1-2ubuntu3_amd64.deb ... 108s Unpacking libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu3) ... 108s Selecting previously unselected package libcxsparse4:amd64. 108s Preparing to unpack .../242-libcxsparse4_1%3a7.8.3+dfsg-2_amd64.deb ... 108s Unpacking libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... 108s Selecting previously unselected package libdolfin-dev-common. 108s Preparing to unpack .../243-libdolfin-dev-common_2019.2.0~legacy20240219.1c52e83-10ubuntu2_all.deb ... 108s Unpacking libdolfin-dev-common (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 108s Selecting previously unselected package libsz2:amd64. 108s Preparing to unpack .../244-libsz2_1.1.3-1_amd64.deb ... 108s Unpacking libsz2:amd64 (1.1.3-1) ... 108s Selecting previously unselected package libhdf5-openmpi-103-1t64:amd64. 108s Preparing to unpack .../245-libhdf5-openmpi-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 108s Unpacking libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 108s Selecting previously unselected package libfftw3-double3:amd64. 108s Preparing to unpack .../246-libfftw3-double3_3.3.10-2fakesync1_amd64.deb ... 108s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1) ... 108s Selecting previously unselected package libfftw3-long3:amd64. 108s Preparing to unpack .../247-libfftw3-long3_3.3.10-2fakesync1_amd64.deb ... 108s Unpacking libfftw3-long3:amd64 (3.3.10-2fakesync1) ... 108s Selecting previously unselected package libfftw3-single3:amd64. 108s Preparing to unpack .../248-libfftw3-single3_3.3.10-2fakesync1_amd64.deb ... 108s Unpacking libfftw3-single3:amd64 (3.3.10-2fakesync1) ... 108s Selecting previously unselected package libfftw3-mpi3:amd64. 108s Preparing to unpack .../249-libfftw3-mpi3_3.3.10-2fakesync1_amd64.deb ... 108s Unpacking libfftw3-mpi3:amd64 (3.3.10-2fakesync1) ... 108s Selecting previously unselected package libmetis5:amd64. 109s Preparing to unpack .../250-libmetis5_5.1.0.dfsg-7build3_amd64.deb ... 109s Unpacking libmetis5:amd64 (5.1.0.dfsg-7build3) ... 109s Selecting previously unselected package libptscotch-7.0:amd64. 109s Preparing to unpack .../251-libptscotch-7.0_7.0.5-1ubuntu1_amd64.deb ... 109s Unpacking libptscotch-7.0:amd64 (7.0.5-1ubuntu1) ... 109s Selecting previously unselected package libsuperlu-dist8:amd64. 109s Preparing to unpack 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.../262-libparpack2t64_3.9.1-1.1ubuntu1_amd64.deb ... 109s Unpacking libparpack2t64:amd64 (3.9.1-1.1ubuntu1) ... 109s Selecting previously unselected package libslepc-real3.21. 109s Preparing to unpack .../263-libslepc-real3.21_3.21.2+dfsg1-2_amd64.deb ... 109s Unpacking libslepc-real3.21 (3.21.2+dfsg1-2) ... 109s Selecting previously unselected package libdolfin2019.2t64:amd64. 109s Preparing to unpack .../264-libdolfin2019.2t64_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 109s Unpacking libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 109s Selecting previously unselected package libopenblas64-0-pthread:amd64. 109s Preparing to unpack .../265-libopenblas64-0-pthread_0.3.28+ds-3_amd64.deb ... 109s Unpacking libopenblas64-0-pthread:amd64 (0.3.28+ds-3) ... 110s Selecting previously unselected package liblapack64-3:amd64. 110s Preparing to unpack .../266-liblapack64-3_3.12.0-3build2_amd64.deb ... 110s Unpacking liblapack64-3:amd64 (3.12.0-3build2) ... 110s Selecting previously unselected package libhypre64m-2.31.0:amd64. 110s Preparing to unpack .../267-libhypre64m-2.31.0_2.31.0-1exp2_amd64.deb ... 110s Unpacking libhypre64m-2.31.0:amd64 (2.31.0-1exp2) ... 110s Selecting previously unselected package libmumps-64pord-5.7:amd64. 110s Preparing to unpack .../268-libmumps-64pord-5.7_5.7.3-3_amd64.deb ... 110s Unpacking libmumps-64pord-5.7:amd64 (5.7.3-3) ... 110s Selecting previously unselected package libpetsc64-real3.21:amd64. 110s Preparing to unpack .../269-libpetsc64-real3.21_3.21.6+dfsg1-2ubuntu2_amd64.deb ... 110s Unpacking libpetsc64-real3.21:amd64 (3.21.6+dfsg1-2ubuntu2) ... 110s Selecting previously unselected package libslepc64-real3.21. 110s Preparing to unpack .../270-libslepc64-real3.21_3.21.2+dfsg1-2_amd64.deb ... 110s Unpacking libslepc64-real3.21 (3.21.2+dfsg1-2) ... 110s Selecting previously unselected package libdolfin64-2019.2t64:amd64. 110s Preparing to unpack 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libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package libhdf5-openmpi-hl-fortran-100t64:amd64. 110s Preparing to unpack .../276-libhdf5-openmpi-hl-fortran-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 110s Unpacking libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package libhdf5-openmpi-cpp-103-1t64:amd64. 110s Preparing to unpack .../277-libhdf5-openmpi-cpp-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 110s Unpacking libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package libhdf5-openmpi-hl-cpp-100t64:amd64. 110s Preparing to unpack .../278-libhdf5-openmpi-hl-cpp-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 110s Unpacking libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package libaec-dev:amd64. 110s Preparing to unpack .../279-libaec-dev_1.1.3-1_amd64.deb ... 110s Unpacking libaec-dev:amd64 (1.1.3-1) ... 110s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 110s Preparing to unpack .../280-libjpeg-turbo8-dev_2.1.5-3ubuntu1_amd64.deb ... 110s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu1) ... 110s Selecting previously unselected package libjpeg8-dev:amd64. 110s Preparing to unpack .../281-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 110s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 110s Selecting previously unselected package libjpeg-dev:amd64. 110s Preparing to unpack .../282-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 110s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 110s Selecting previously unselected package libhdf5-openmpi-dev. 110s Preparing to unpack .../283-libhdf5-openmpi-dev_1.10.10+repack-4ubuntu3_amd64.deb ... 110s Unpacking libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package libhdf5-mpi-dev. 110s Preparing to unpack .../284-libhdf5-mpi-dev_1.10.10+repack-4ubuntu3_amd64.deb ... 110s Unpacking libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 110s Selecting previously unselected package libldl3:amd64. 111s Preparing to unpack .../285-libldl3_1%3a7.8.3+dfsg-2_amd64.deb ... 111s Unpacking libldl3:amd64 (1:7.8.3+dfsg-2) ... 111s Selecting previously unselected package libsuitesparse-mongoose3:amd64. 111s Preparing to unpack .../286-libsuitesparse-mongoose3_1%3a7.8.3+dfsg-2_amd64.deb ... 111s Unpacking libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... 111s Selecting previously unselected package librbio4:amd64. 111s Preparing to unpack .../287-librbio4_1%3a7.8.3+dfsg-2_amd64.deb ... 111s Unpacking librbio4:amd64 (1:7.8.3+dfsg-2) ... 111s Selecting previously unselected package libspex3:amd64. 111s Preparing to unpack .../288-libspex3_1%3a7.8.3+dfsg-2_amd64.deb ... 111s Unpacking libspex3:amd64 (1:7.8.3+dfsg-2) ... 111s Selecting previously unselected package libparu1:amd64. 111s Preparing to unpack .../289-libparu1_1%3a7.8.3+dfsg-2_amd64.deb ... 111s Unpacking libparu1:amd64 (1:7.8.3+dfsg-2) ... 111s Selecting previously unselected package libsuitesparse-dev:amd64. 111s Preparing to unpack .../290-libsuitesparse-dev_1%3a7.8.3+dfsg-2_amd64.deb ... 111s Unpacking libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... 111s Selecting previously unselected package libscotch-7.0:amd64. 111s Preparing to unpack .../291-libscotch-7.0_7.0.5-1ubuntu1_amd64.deb ... 111s Unpacking libscotch-7.0:amd64 (7.0.5-1ubuntu1) ... 111s Selecting previously unselected package libscotch-dev. 111s Preparing to unpack .../292-libscotch-dev_7.0.5-1ubuntu1_amd64.deb ... 111s Unpacking libscotch-dev (7.0.5-1ubuntu1) ... 111s Selecting previously unselected package libxml2-dev:amd64. 111s Preparing to unpack .../293-libxml2-dev_2.12.7+dfsg+really2.9.14-0.2build1_amd64.deb ... 111s Unpacking libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 111s Selecting previously unselected package python3-numpy. 111s Preparing to unpack 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Preparing to unpack .../304-libscalapack-openmpi-dev_2.2.1-3.1ubuntu2_amd64.deb ... 113s Unpacking libscalapack-openmpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 113s Selecting previously unselected package libscalapack-mpi-dev:amd64. 113s Preparing to unpack .../305-libscalapack-mpi-dev_2.2.1-3.1ubuntu2_amd64.deb ... 113s Unpacking libscalapack-mpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 113s Selecting previously unselected package libfftw3-quad3:amd64. 113s Preparing to unpack .../306-libfftw3-quad3_3.3.10-2fakesync1_amd64.deb ... 113s Unpacking libfftw3-quad3:amd64 (3.3.10-2fakesync1) ... 113s Selecting previously unselected package libfftw3-bin. 113s Preparing to unpack .../307-libfftw3-bin_3.3.10-2fakesync1_amd64.deb ... 113s Unpacking libfftw3-bin (3.3.10-2fakesync1) ... 113s Selecting previously unselected package libfftw3-dev:amd64. 113s Preparing to unpack .../308-libfftw3-dev_3.3.10-2fakesync1_amd64.deb ... 113s Unpacking libfftw3-dev:amd64 (3.3.10-2fakesync1) ... 113s Selecting previously unselected package libfftw3-mpi-dev:amd64. 113s Preparing to unpack .../309-libfftw3-mpi-dev_3.3.10-2fakesync1_amd64.deb ... 113s Unpacking libfftw3-mpi-dev:amd64 (3.3.10-2fakesync1) ... 113s Selecting previously unselected package opencl-c-headers. 113s Preparing to unpack .../310-opencl-c-headers_3.0~2024.05.08-1_all.deb ... 113s Unpacking opencl-c-headers (3.0~2024.05.08-1) ... 113s Selecting previously unselected package opencl-clhpp-headers. 113s Preparing to unpack .../311-opencl-clhpp-headers_3.0~2024.05.08-1ubuntu1_all.deb ... 113s Unpacking opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 113s Selecting previously unselected package ocl-icd-opencl-dev:amd64. 113s Preparing to unpack .../312-ocl-icd-opencl-dev_2.3.2-1build1_amd64.deb ... 113s Unpacking ocl-icd-opencl-dev:amd64 (2.3.2-1build1) ... 113s Selecting previously unselected package libsuperlu-dev:amd64. 113s Preparing to unpack .../313-libsuperlu-dev_7.0.0+dfsg1-2_amd64.deb ... 113s Unpacking libsuperlu-dev:amd64 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previously unselected package xtrans-dev. 113s Preparing to unpack .../319-xtrans-dev_1.4.0-1_all.deb ... 113s Unpacking xtrans-dev (1.4.0-1) ... 113s Selecting previously unselected package libxcb1-dev:amd64. 113s Preparing to unpack .../320-libxcb1-dev_1.17.0-2_amd64.deb ... 113s Unpacking libxcb1-dev:amd64 (1.17.0-2) ... 113s Selecting previously unselected package libx11-dev:amd64. 113s Preparing to unpack .../321-libx11-dev_2%3a1.8.10-2_amd64.deb ... 113s Unpacking libx11-dev:amd64 (2:1.8.10-2) ... 113s Selecting previously unselected package libyaml-dev:amd64. 113s Preparing to unpack .../322-libyaml-dev_0.2.5-1build1_amd64.deb ... 113s Unpacking libyaml-dev:amd64 (0.2.5-1build1) ... 113s Selecting previously unselected package libpetsc3.21-dev-common. 113s Preparing to unpack .../323-libpetsc3.21-dev-common_3.21.6+dfsg1-2ubuntu2_all.deb ... 113s Unpacking libpetsc3.21-dev-common (3.21.6+dfsg1-2ubuntu2) ... 113s Selecting previously unselected package libhypre-dev:amd64. 113s Preparing to unpack .../324-libhypre-dev_2.31.0-1exp2_amd64.deb ... 113s Unpacking libhypre-dev:amd64 (2.31.0-1exp2) ... 114s Selecting previously unselected package libmumps-headers-dev. 114s Preparing to unpack .../325-libmumps-headers-dev_5.7.3-3_all.deb ... 114s Unpacking libmumps-headers-dev (5.7.3-3) ... 114s Selecting previously unselected package libmumps-dev:amd64. 114s Preparing to unpack .../326-libmumps-dev_5.7.3-3_amd64.deb ... 114s Unpacking libmumps-dev:amd64 (5.7.3-3) ... 114s Selecting previously unselected package libc6-dbg:amd64. 114s Preparing to unpack .../327-libc6-dbg_2.40-1ubuntu3_amd64.deb ... 114s Unpacking libc6-dbg:amd64 (2.40-1ubuntu3) ... 114s Selecting previously unselected package valgrind. 114s Preparing to unpack .../328-valgrind_1%3a3.23.0-0ubuntu2_amd64.deb ... 114s Unpacking valgrind (1:3.23.0-0ubuntu2) ... 114s Selecting previously unselected package valgrind-mpi. 114s Preparing to unpack .../329-valgrind-mpi_1%3a3.23.0-0ubuntu2_amd64.deb ... 114s Unpacking valgrind-mpi (1:3.23.0-0ubuntu2) ... 114s Selecting previously unselected package libpetsc-real3.21-dev:amd64. 114s Preparing to unpack .../330-libpetsc-real3.21-dev_3.21.6+dfsg1-2ubuntu2_amd64.deb ... 114s Unpacking libpetsc-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 114s Selecting previously unselected package libparpack2-dev:amd64. 114s Preparing to unpack .../331-libparpack2-dev_3.9.1-1.1ubuntu1_amd64.deb ... 114s Unpacking libparpack2-dev:amd64 (3.9.1-1.1ubuntu1) ... 114s Selecting previously unselected package libslepc-real3.21-dev. 114s Preparing to unpack .../332-libslepc-real3.21-dev_3.21.2+dfsg1-2_amd64.deb ... 114s Unpacking libslepc-real3.21-dev (3.21.2+dfsg1-2) ... 114s Selecting previously unselected package libdolfin-dev:amd64. 114s Preparing to unpack .../333-libdolfin-dev_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 114s Unpacking libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 114s Selecting previously unselected package libopenblas64-0:amd64. 114s Preparing to unpack .../334-libopenblas64-0_0.3.28+ds-3_amd64.deb ... 114s Unpacking libopenblas64-0:amd64 (0.3.28+ds-3) ... 114s Selecting previously unselected package libopenblas64-pthread-dev:amd64. 114s Preparing to unpack .../335-libopenblas64-pthread-dev_0.3.28+ds-3_amd64.deb ... 114s Unpacking libopenblas64-pthread-dev:amd64 (0.3.28+ds-3) ... 115s Selecting previously unselected package libopenblas64-dev:amd64. 115s Preparing to unpack .../336-libopenblas64-dev_0.3.28+ds-3_amd64.deb ... 115s Unpacking libopenblas64-dev:amd64 (0.3.28+ds-3) ... 115s Selecting previously unselected package libhypre64m-dev:amd64. 115s Preparing to unpack .../337-libhypre64m-dev_2.31.0-1exp2_amd64.deb ... 115s Unpacking libhypre64m-dev:amd64 (2.31.0-1exp2) ... 115s Selecting previously unselected package libmumps64-dev:amd64. 115s Preparing to unpack .../338-libmumps64-dev_5.7.3-3_amd64.deb ... 115s Unpacking libmumps64-dev:amd64 (5.7.3-3) ... 115s Selecting previously unselected package libpetsc64-real3.21-dev:amd64. 115s Preparing to unpack .../339-libpetsc64-real3.21-dev_3.21.6+dfsg1-2ubuntu2_amd64.deb ... 115s Unpacking libpetsc64-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 115s Selecting previously unselected package libslepc64-real3.21-dev. 115s Preparing to unpack .../340-libslepc64-real3.21-dev_3.21.2+dfsg1-2_amd64.deb ... 115s Unpacking libslepc64-real3.21-dev (3.21.2+dfsg1-2) ... 115s Selecting previously unselected package libdolfin64-dev:amd64. 115s Preparing to unpack .../341-libdolfin64-dev_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 115s Unpacking libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 115s Selecting previously unselected package libexpat1-dev:amd64. 115s Preparing to unpack .../342-libexpat1-dev_2.6.4-1_amd64.deb ... 115s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 115s Selecting previously unselected package libjs-underscore. 115s Preparing to unpack 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.../353-libpython3-all-dev_3.12.7-1_amd64.deb ... 116s Unpacking libpython3-all-dev:amd64 (3.12.7-1) ... 116s Selecting previously unselected package petsc64-dev. 116s Preparing to unpack .../354-petsc64-dev_3.21.6+dfsg1-2ubuntu2_all.deb ... 116s Unpacking petsc64-dev (3.21.6+dfsg1-2ubuntu2) ... 116s Selecting previously unselected package pybind11-dev. 116s Preparing to unpack .../355-pybind11-dev_2.13.6-1_all.deb ... 116s Unpacking pybind11-dev (2.13.6-1) ... 116s Selecting previously unselected package sphinx-common. 116s Preparing to unpack .../356-sphinx-common_7.4.7-4_all.deb ... 116s Unpacking sphinx-common (7.4.7-4) ... 116s Selecting previously unselected package python-petsc4py-doc. 116s Preparing to unpack .../357-python-petsc4py-doc_3.21.6-2ubuntu2_all.deb ... 116s Unpacking python-petsc4py-doc (3.21.6-2ubuntu2) ... 116s Selecting previously unselected package python3.13. 116s Preparing to unpack .../358-python3.13_3.13.0-2_amd64.deb ... 116s Unpacking python3.13 (3.13.0-2) ... 116s Selecting previously unselected package python3-all. 116s Preparing to unpack .../359-python3-all_3.12.7-1_amd64.deb ... 116s Unpacking python3-all (3.12.7-1) ... 116s Selecting previously unselected package python3.12-dev. 116s Preparing to unpack .../360-python3.12-dev_3.12.7-3_amd64.deb ... 116s Unpacking python3.12-dev (3.12.7-3) ... 116s Selecting previously unselected package python3-dev. 116s Preparing to unpack .../361-python3-dev_3.12.7-1_amd64.deb ... 116s Unpacking python3-dev (3.12.7-1) ... 116s Selecting previously unselected package python3.13-dev. 116s Preparing to unpack .../362-python3.13-dev_3.13.0-2_amd64.deb ... 116s Unpacking python3.13-dev (3.13.0-2) ... 116s Selecting previously unselected package python3-all-dev. 116s Preparing to unpack .../363-python3-all-dev_3.12.7-1_amd64.deb ... 116s Unpacking python3-all-dev (3.12.7-1) ... 116s Selecting previously unselected package python3-defusedxml. 116s Preparing to unpack .../364-python3-defusedxml_0.7.1-2_all.deb ... 116s Unpacking python3-defusedxml (0.7.1-2) ... 116s Selecting previously unselected package python3-roman. 116s Preparing to unpack .../365-python3-roman_4.2-1_all.deb ... 116s Unpacking python3-roman (4.2-1) ... 116s Selecting previously unselected package python3-docutils. 116s Preparing to unpack .../366-python3-docutils_0.21.2+dfsg-2_all.deb ... 116s Unpacking python3-docutils (0.21.2+dfsg-2) ... 116s Selecting previously unselected package swig. 116s Preparing to unpack .../367-swig_4.2.1-1_amd64.deb ... 116s Unpacking swig (4.2.1-1) ... 117s Selecting previously unselected package python3-petsc4py-real3.21. 117s Preparing to unpack .../368-python3-petsc4py-real3.21_3.21.6-2ubuntu2_amd64.deb ... 117s Unpacking python3-petsc4py-real3.21 (3.21.6-2ubuntu2) ... 117s Selecting previously unselected package python3-petsc4py-real. 117s Preparing to unpack .../369-python3-petsc4py-real_3.21.6-2ubuntu2_all.deb ... 117s Unpacking python3-petsc4py-real (3.21.6-2ubuntu2) ... 117s Selecting previously unselected package python3-slepc4py-real3.21. 117s Preparing to unpack .../370-python3-slepc4py-real3.21_3.21.2-1ubuntu2_amd64.deb ... 117s Unpacking python3-slepc4py-real3.21 (3.21.2-1ubuntu2) ... 117s Selecting previously unselected package python3-slepc4py-real. 117s Preparing to unpack .../371-python3-slepc4py-real_3.21.2-1ubuntu2_all.deb ... 117s Unpacking python3-slepc4py-real (3.21.2-1ubuntu2) ... 117s Selecting previously unselected package python3-dolfin-real. 117s Preparing to unpack .../372-python3-dolfin-real_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 117s Unpacking python3-dolfin-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 117s Selecting previously unselected package python3-petsc4py-64-real3.21. 117s Preparing to unpack .../373-python3-petsc4py-64-real3.21_3.21.6-2ubuntu2_amd64.deb ... 117s Unpacking python3-petsc4py-64-real3.21 (3.21.6-2ubuntu2) ... 117s Selecting previously unselected package python3-petsc4py-64-real. 117s Preparing to unpack .../374-python3-petsc4py-64-real_3.21.6-2ubuntu2_all.deb ... 117s Unpacking python3-petsc4py-64-real (3.21.6-2ubuntu2) ... 117s Selecting previously unselected package python3-slepc4py-64-real3.21. 117s Preparing to unpack .../375-python3-slepc4py-64-real3.21_3.21.2-1ubuntu2_amd64.deb ... 117s Unpacking python3-slepc4py-64-real3.21 (3.21.2-1ubuntu2) ... 117s Selecting previously unselected package python3-slepc4py-64-real. 117s Preparing to unpack .../376-python3-slepc4py-64-real_3.21.2-1ubuntu2_all.deb ... 117s Unpacking python3-slepc4py-64-real (3.21.2-1ubuntu2) ... 117s Selecting previously unselected package python3-pkgconfig. 117s Preparing to unpack .../377-python3-pkgconfig_1.5.5-2_all.deb ... 117s Unpacking python3-pkgconfig (1.5.5-2) ... 117s Selecting previously unselected package python3-pybind11. 117s Preparing to unpack .../378-python3-pybind11_2.13.6-1_all.deb ... 117s Unpacking python3-pybind11 (2.13.6-1) ... 117s Selecting previously unselected package python3-dolfin64-real. 117s Preparing to unpack .../379-python3-dolfin64-real_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 117s Unpacking python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 117s Selecting previously unselected package python3-imagesize. 117s Preparing to unpack .../380-python3-imagesize_1.4.1-1_all.deb ... 117s Unpacking python3-imagesize (1.4.1-1) ... 117s Selecting previously unselected package python3-packaging. 117s Preparing to unpack .../381-python3-packaging_24.1-1_all.deb ... 117s Unpacking python3-packaging (24.1-1) ... 117s Selecting previously unselected package python3-ply. 117s Preparing to unpack .../382-python3-ply_3.11-7_all.deb ... 117s Unpacking python3-ply (3.11-7) ... 117s Selecting previously unselected package python3-pusimp. 117s Preparing to unpack .../383-python3-pusimp_0.1.1-1_all.deb ... 117s Unpacking python3-pusimp (0.1.1-1) ... 117s Selecting previously unselected package python3-six. 117s Preparing to unpack .../384-python3-six_1.16.0-7_all.deb ... 117s Unpacking python3-six (1.16.0-7) ... 117s Selecting previously unselected package python3-snowballstemmer. 117s Preparing to unpack .../385-python3-snowballstemmer_2.2.0-4build1_all.deb ... 117s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 117s Selecting previously unselected package python3-alabaster. 117s Preparing to unpack .../386-python3-alabaster_0.7.16-0.1_all.deb ... 117s Unpacking python3-alabaster (0.7.16-0.1) ... 117s Selecting previously unselected package python3-sphinx. 117s Preparing to unpack .../387-python3-sphinx_7.4.7-4_all.deb ... 117s Unpacking python3-sphinx (7.4.7-4) ... 117s Selecting previously unselected package sphinx-rtd-theme-common. 117s Preparing to unpack .../388-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 117s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 117s Selecting previously unselected package python3-sphinxcontrib.jquery. 117s Preparing to unpack .../389-python3-sphinxcontrib.jquery_4.1-5_all.deb ... 117s Unpacking python3-sphinxcontrib.jquery (4.1-5) ... 117s Selecting previously unselected package python3-sphinx-rtd-theme. 117s Preparing to unpack .../390-python3-sphinx-rtd-theme_3.0.1+dfsg-1_all.deb ... 117s Unpacking python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 117s Selecting previously unselected package slepc64-dev. 118s Preparing to unpack .../391-slepc64-dev_3.21.2+dfsg1-2_amd64.deb ... 118s Unpacking slepc64-dev (3.21.2+dfsg1-2) ... 118s Selecting previously unselected package python3-petsc4py. 118s Preparing to unpack .../392-python3-petsc4py_3.21.6-2ubuntu2_all.deb ... 118s Unpacking python3-petsc4py (3.21.6-2ubuntu2) ... 118s Selecting previously unselected package python3-slepc4py. 118s Preparing to unpack .../393-python3-slepc4py_3.21.2-1ubuntu2_all.deb ... 118s Unpacking python3-slepc4py (3.21.2-1ubuntu2) ... 118s Selecting previously unselected package python3-dolfin. 118s Preparing to unpack .../394-python3-dolfin_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 118s Unpacking python3-dolfin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 118s Selecting previously unselected package dolfin-doc. 118s Preparing to unpack .../395-dolfin-doc_2019.2.0~legacy20240219.1c52e83-10ubuntu2_all.deb ... 118s Unpacking dolfin-doc (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 118s Selecting previously unselected package dolfin-bin. 118s Preparing to unpack .../396-dolfin-bin_2019.2.0~legacy20240219.1c52e83-10ubuntu2_all.deb ... 118s Unpacking dolfin-bin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 118s Selecting previously unselected package petsc-dev. 118s Preparing to unpack .../397-petsc-dev_3.21.6+dfsg1-2ubuntu2_all.deb ... 118s Unpacking petsc-dev (3.21.6+dfsg1-2ubuntu2) ... 118s Selecting previously unselected package slepc-dev. 118s Preparing to unpack .../398-slepc-dev_3.21.2+dfsg1-2_amd64.deb ... 118s Unpacking slepc-dev (3.21.2+dfsg1-2) ... 118s Selecting previously unselected package libjs-modernizr. 118s Preparing to unpack .../399-libjs-modernizr_3.13.0-0.1_all.deb ... 118s Unpacking libjs-modernizr (3.13.0-0.1) ... 118s Selecting previously unselected package autopkgtest-satdep. 118s Preparing to unpack .../400-1-autopkgtest-satdep.deb ... 118s Unpacking autopkgtest-satdep (0) ... 118s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 118s Setting up libgnutls-openssl27t64:amd64 (3.8.8-2ubuntu1) ... 118s Setting up libboost-program-options1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 118s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 118s Setting up libxapian30:amd64 (1.4.25-1) ... 118s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 118s Setting up libaom3:amd64 (3.11.0~rc1-1) ... 118s Setting up libpciaccess0:amd64 (0.17-3build1) ... 118s Setting up fonts-lato (2.015-1) ... 118s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 118s Setting up swig (4.2.1-1) ... 118s Setting up libzstd-dev:amd64 (1.5.6+dfsg-1) ... 118s Setting up liblerc4:amd64 (4.0.0+ds-5) ... 118s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 118s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 118s Setting up libboost-date-time1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 118s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 118s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 118s Setting up libyaml-dev:amd64 (0.2.5-1build1) ... 118s Setting up libboost-timer1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 118s Setting up libxcb-render0:amd64 (1.17.0-2) ... 118s Setting up libarchive-zip-perl (1.68-1) ... 118s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 118s Setting up libscotch-7.0:amd64 (7.0.5-1ubuntu1) ... 118s Setting up libboost-regex1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 118s Setting up libdebhelper-perl (13.20ubuntu1) ... 118s Setting up libbrotli1:amd64 (1.1.0-2build3) ... 118s Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10) ... 118s Setting up libboost-system1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 118s Setting up liblab-gamut1:amd64 (2.42.4-2build3) ... 118s Setting up x11-common (1:7.7+23ubuntu3) ... 119s Setting up libibumad3:amd64 (52.0-2ubuntu1) ... 119s Setting up libdeflate0:amd64 (1.22-1) ... 119s Setting up libcurl3t64-gnutls:amd64 (8.9.1-2ubuntu3) ... 119s Setting up libboost-thread1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 119s Setting up m4 (1.4.19-4build1) ... 119s Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 119s Setting up libmetis5:amd64 (5.1.0.dfsg-7build3) ... 119s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 119s Setting up libibmad5:amd64 (52.0-2ubuntu1) ... 119s Setting up libldl3:amd64 (1:7.8.3+dfsg-2) ... 119s Setting up libboost-filesystem1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 119s Setting up libdolfin-dev-common (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 119s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 119s Setting up libjs-modernizr (3.13.0-0.1) ... 119s Setting up libblis4-pthread:amd64 (0.9.0-1) ... 119s update-alternatives: using /usr/lib/x86_64-linux-gnu/blis-pthread/libblis.so.4 to provide /usr/lib/x86_64-linux-gnu/libblis.so.4 (libblis.so.4-x86_64-linux-gnu) in auto mode 119s update-alternatives: using /usr/lib/x86_64-linux-gnu/blis-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 119s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 119s Setting up libaec0:amd64 (1.1.3-1) ... 119s Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... 119s Setting up libpsl-dev:amd64 (0.21.2-1.1build1) ... 119s Setting up libc6-dbg:amd64 (2.40-1ubuntu3) ... 119s Setting up libnuma-dev:amd64 (2.0.18-1build1) ... 119s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 119s Setting up libboost-atomic1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 119s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 119s Setting up libboost-serialization1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 119s Setting up libbtf2:amd64 (1:7.8.3+dfsg-2) ... 119s Setting up libblis-pthread-dev:amd64 (0.9.0-1) ... 119s update-alternatives: using /usr/lib/x86_64-linux-gnu/blis-pthread/libblis.so to provide /usr/lib/x86_64-linux-gnu/libblis.so (libblis.so-x86_64-linux-gnu) in auto mode 119s update-alternatives: using /usr/lib/x86_64-linux-gnu/blis-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 119s Setting up xtrans-dev (1.4.0-1) ... 119s Setting up autotools-dev (20220109.1) ... 119s Setting up libblas3:amd64 (3.12.0-3build2) ... 119s Setting up libunbound8:amd64 (1.20.0-1ubuntu2.1) ... 119s Setting up libpkgconf3:amd64 (1.8.1-4) ... 119s Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 119s Setting up libmunge2:amd64 (0.5.15-4build1) ... 119s Setting up libexpat1-dev:amd64 (2.6.4-1) ... 119s Setting up libgnutls-dane0t64:amd64 (3.8.8-2ubuntu1) ... 119s Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-3.2ubuntu3) ... 119s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 119s Setting up libjsoncpp26:amd64 (1.9.6-2) ... 119s Setting up libpathplan4:amd64 (2.42.4-2build3) ... 119s Setting up libann0 (1.1.2+doc-9build1) ... 119s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 119s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 119s Setting up fonts-dejavu-mono (2.37-8) ... 119s Setting up libssl-dev:amd64 (3.3.1-2ubuntu2) ... 119s Setting up libhwloc15:amd64 (2.11.2-1) ... 119s Setting up libmpc3:amd64 (1.3.1-1build2) ... 119s Setting up autopoint (0.22.5-2) ... 119s Setting up icu-devtools (74.2-1ubuntu4) ... 119s Setting up fonts-dejavu-core (2.37-8) ... 119s Setting up pkgconf-bin (1.8.1-4) ... 119s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu1) ... 119s Setting up libltdl7:amd64 (2.4.7-8) ... 119s Setting up opencl-c-headers (3.0~2024.05.08-1) ... 119s Setting up libidn2-dev:amd64 (2.3.7-2build2) ... 119s Setting up libfftw3-double3:amd64 (3.3.10-2fakesync1) ... 119s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 119s Setting up autoconf (2.72-3) ... 119s Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10) ... 119s Setting up libwebp7:amd64 (1.4.0-0.1) ... 119s Setting up libmumps-headers-dev (5.7.3-3) ... 119s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 119s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 119s Setting up dwz (0.15-1build6) ... 119s Setting up libnl-3-dev:amd64 (3.7.0-0.3build2) ... 119s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 119s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 119s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 119s Setting up libjson-perl (4.10000-1) ... 119s Setting up libpsm2-2 (11.2.185-2.1) ... 119s Setting up openmpi-common (5.0.5-6) ... 119s Setting up debugedit (1:5.1-1) ... 119s Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ... 119s Setting up librdmacm1t64:amd64 (52.0-2ubuntu1) ... 119s Setting up python3.13-minimal (3.13.0-2) ... 120s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 120s Setting up libthai-data (0.1.29-2build1) ... 120s Setting up xorg-sgml-doctools (1:1.11-1.1) ... 120s Setting up libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2build1) ... 120s Setting up sgml-base (1.31) ... 120s Setting up cmake-data (3.31.0-1) ... 120s Setting up librhash1:amd64 (1.4.5-1) ... 120s Setting up libcdt5:amd64 (2.42.4-2build3) ... 120s Setting up libcgraph6:amd64 (2.42.4-2build3) ... 120s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 120s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 120s Setting up libboost-math1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 120s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 120s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 120s Setting up libisl23:amd64 (0.27-1) ... 120s Setting up libde265-0:amd64 (1.0.15-1build4) ... 120s Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... 120s Setting up valgrind (1:3.23.0-0ubuntu2) ... 120s Setting up libtasn1-6-dev:amd64 (4.19.0-3build1) ... 120s Setting up valgrind-mpi (1:3.23.0-0ubuntu2) ... 120s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 120s Setting up libicu-dev:amd64 (74.2-1ubuntu4) ... 120s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 120s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 120s Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 120s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 120s Setting up libbrotli-dev:amd64 (1.1.0-2build3) ... 120s Setting up libfmt10:amd64 (10.1.1+ds1-4) ... 120s Setting up chrpath (0.18-1) ... 120s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 120s Setting up libp11-kit-dev:amd64 (0.25.5-2ubuntu1) ... 120s Setting up libblas-dev:amd64 (3.12.0-3build2) ... 120s Setting up libsz2:amd64 (1.1.3-1) ... 120s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 120s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 120s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 120s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 120s Setting up libblas64-3:amd64 (3.12.0-3build2) ... 120s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode 120s Setting up libpython3.13:amd64 (3.13.0-2) ... 120s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 120s Setting up automake (1:1.16.5-1.3ubuntu1) ... 120s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 120s Setting up x11proto-dev (2024.1-1) ... 120s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 120s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 120s Setting up libice6:amd64 (2:1.1.1-1) ... 120s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu1) ... 120s Setting up liblapack3:amd64 (3.12.0-3build2) ... 120s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 120s Setting up gettext (0.22.5-2) ... 120s Setting up libarpack2t64:amd64 (3.9.1-1.1ubuntu1) ... 120s Setting up libfftw3-single3:amd64 (3.3.10-2fakesync1) ... 120s Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 120s Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... 120s Setting up libxau-dev:amd64 (1:1.0.11-1) ... 120s Setting up nettle-dev:amd64 (3.10-1) ... 120s Setting up libcurl4t64:amd64 (8.9.1-2ubuntu3) ... 120s Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 120s Setting up python3.13 (3.13.0-2) ... 121s Setting up libspex3:amd64 (1:7.8.3+dfsg-2) ... 121s Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... 121s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 121s Setting up libopenblas64-0-pthread:amd64 (0.3.28+ds-3) ... 121s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode 121s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode 121s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-x86_64-linux-gnu) in auto mode 121s Setting up libaec-dev:amd64 (1.1.3-1) ... 121s Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... 121s Setting up libfftw3-long3:amd64 (3.3.10-2fakesync1) ... 121s Setting up python3 (3.12.7-1) ... 121s /usr/share/petsc/3.21/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' 121s axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') 121s /usr/share/petsc/3.21/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' 121s axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') 121s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' 121s print("\documentclass{article}") 121s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' 121s print("\centering") 121s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' 121s print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") 121s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' 121s print("\hline") 121s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' 121s print("\end{tabular}") 121s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' 121s print("\end{table}") 121s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' 121s print("\end{document}") 121s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 121s Setting up libopenblas64-pthread-dev:amd64 (0.3.28+ds-3) ... 121s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode 121s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode 121s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so (libopenblas64.so-x86_64-linux-gnu) in auto mode 121s Setting up liblapack64-3:amd64 (3.12.0-3build2) ... 121s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 121s Setting up libcamd3:amd64 (1:7.8.3+dfsg-2) ... 121s Setting up pkgconf:amd64 (1.8.1-4) ... 121s Setting up intltool-debian (0.35.0+20060710.6) ... 121s Setting up python3-six (1.16.0-7) ... 122s Setting up libnl-route-3-dev:amd64 (3.7.0-0.3build2) ... 122s Setting up libltdl-dev:amd64 (2.4.7-8) ... 122s Setting up libthai0:amd64 (0.1.29-2build1) ... 122s Setting up libxdmcp-dev:amd64 (1:1.1.3-0ubuntu6) ... 122s Setting up python3-roman (4.2-1) ... 122s Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 122s Setting up doxygen (1.9.8+ds-2ubuntu2) ... 122s Setting up python3-packaging (24.1-1) ... 122s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 122s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 122s Setting up python3-snowballstemmer (2.2.0-4build1) ... 122s Setting up librbio4:amd64 (1:7.8.3+dfsg-2) ... 122s Setting up libraqm0:amd64 (0.10.1-1build1) ... 122s Setting up libpython3.13-dev:amd64 (3.13.0-2) ... 122s Setting up libfftw3-quad3:amd64 (3.3.10-2fakesync1) ... 122s Setting up opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 122s Setting up libevent-dev (2.1.12-stable-10) ... 122s Setting up liblapack-dev:amd64 (3.12.0-3build2) ... 122s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 122s Setting up libeigen3-dev (3.4.0-4build1) ... 122s Setting up python3.12-dev (3.12.7-3) ... 122s Setting up pkg-config:amd64 (1.8.1-4) ... 122s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 122s Setting up libpmix2t64:amd64 (5.0.3-2) ... 122s Setting up libssh2-1-dev:amd64 (1.11.1-1) ... 122s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 125s Setting up libjs-sphinxdoc (7.4.7-4) ... 125s Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1build1) ... 125s Setting up cpp-14 (14.2.0-8ubuntu1) ... 125s Setting up libccolamd3:amd64 (1:7.8.3+dfsg-2) ... 125s Setting up dh-strip-nondeterminism (1.14.0-1) ... 125s Setting up libopenblas64-0:amd64 (0.3.28+ds-3) ... 125s Setting up libgvpr2:amd64 (2.42.4-2build3) ... 125s Setting up python3-ufl-legacy (1:2022.3.0-3) ... 125s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 125s Setting up xml-core (0.19) ... 125s Setting up cmake (3.31.0-1) ... 125s Setting up libhwloc-dev:amd64 (2.11.2-1) ... 125s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 125s Setting up curl (8.9.1-2ubuntu3) ... 125s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 126s Setting up python3-pkgconfig (1.5.5-2) ... 126s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 126s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 126s Setting up python3-mpmath (1.3.0-1) ... 126s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 126s Setting up libsm6:amd64 (2:1.2.4-1) ... 126s Setting up python3-pusimp (0.1.1-1) ... 127s Setting up libpmix-dev:amd64 (5.0.3-2) ... 127s Setting up libhsakmt1:amd64 (6.1.2+ds-1) ... 127s Setting up python3-imagesize (1.4.1-1) ... 127s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 127s Setting up dh-python (6.20241024) ... 127s Setting up libgfortran-14-dev:amd64 (14.2.0-8ubuntu1) ... 127s Setting up libgnutls28-dev:amd64 (3.8.8-2ubuntu1) ... 127s Setting up python3-sympy (1.13.3-1) ... 136s Setting up libnghttp2-dev:amd64 (1.64.0-1) ... 136s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 138s Regenerating fonts cache... done. 138s Setting up libcholmod5:amd64 (1:7.8.3+dfsg-2) ... 138s Setting up libboost1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 138s Setting up python3-fiat (2019.2.0~git20210419.7d418fa-5) ... 138s Setting up libarpack2-dev:amd64 (3.9.1-1.1ubuntu1) ... 138s Setting up libpython3-dev:amd64 (3.12.7-1) ... 139s Setting up libxcb1-dev:amd64 (1.17.0-2) ... 139s Setting up libopenblas64-dev:amd64 (0.3.28+ds-3) ... 139s Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libboost-math1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libspqr4:amd64 (1:7.8.3+dfsg-2) ... 139s Setting up libboost-chrono-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up libfftw3-bin (3.3.10-2fakesync1) ... 139s Setting up python3-defusedxml (0.7.1-2) ... 139s Setting up python3.13-dev (3.13.0-2) ... 139s Setting up python3-alabaster (0.7.16-0.1) ... 139s Setting up libboost-math-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up po-debconf (1.0.21+nmu1) ... 139s Setting up python3-ply (3.11-7) ... 139s Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... 139s Setting up libboost-program-options1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 139s Setting up libx11-dev:amd64 (2:1.8.10-2) ... 139s Setting up python3-all (3.12.7-1) ... 139s Setting up libibverbs-dev:amd64 (52.0-2ubuntu1) ... 139s Setting up pybind11-dev (2.13.6-1) ... 139s Setting up libcairo2:amd64 (1.18.2-2) ... 139s Setting up libboost-timer1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libboost-program-options-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up libklu2:amd64 (1:7.8.3+dfsg-2) ... 139s Setting up libpython3-all-dev:amd64 (3.12.7-1) ... 139s Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up sphinx-common (7.4.7-4) ... 139s Setting up python3-dev (3.12.7-1) ... 139s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 139s Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 139s Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libboost-serialization-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up libboost-atomic1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libumfpack6:amd64 (1:7.8.3+dfsg-2) ... 139s Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ... 139s Setting up cpp (4:14.1.0-2ubuntu1) ... 139s Setting up libboost-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up libboost-system1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 139s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... 139s Setting up libfftw3-dev:amd64 (3.3.10-2fakesync1) ... 139s Setting up libboost-timer-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up python3-pybind11 (2.13.6-1) ... 139s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... 139s Setting up python3-all-dev (3.12.7-1) ... 139s Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 139s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 139s Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 139s Setting up libxaw7:amd64 (2:1.0.16-1) ... 139s Setting up libboost-iostreams-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up python-petsc4py-doc (3.21.6-2ubuntu2) ... 139s Setting up libparu1:amd64 (1:7.8.3+dfsg-2) ... 139s Setting up gcc-14 (14.2.0-8ubuntu1) ... 139s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 139s Setting up libamdhip64-5 (5.7.1-5) ... 139s Setting up libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu3) ... 139s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 139s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 139s Setting up g++-14 (14.2.0-8ubuntu1) ... 139s Setting up gfortran-14 (14.2.0-8ubuntu1) ... 139s Setting up libboost-filesystem-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up libboost-thread-dev:amd64 (1.83.0.2ubuntu1) ... 139s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 139s Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... 139s Setting up libtool (2.4.7-8) ... 139s Setting up gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 139s Setting up gcc (4:14.1.0-2ubuntu1) ... 139s Setting up dh-autoreconf (20) ... 139s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 139s Setting up g++ (4:14.1.0-2ubuntu1) ... 139s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 139s Setting up libparpack2t64:amd64 (3.9.1-1.1ubuntu1) ... 139s Setting up build-essential (12.10ubuntu1) ... 139s Setting up libboost-mpi1.83.0 (1.83.0-3.2ubuntu3) ... 139s Setting up openmpi-bin (5.0.5-6) ... 139s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 139s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 139s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 139s Setting up libptscotch-7.0:amd64 (7.0.5-1ubuntu1) ... 139s Setting up mpi-default-bin (1.17) ... 139s Setting up debhelper (13.20ubuntu1) ... 139s Setting up libcombblas2.0.0t64:amd64 (2.0.0-6) ... 139s Setting up libfftw3-mpi3:amd64 (3.3.10-2fakesync1) ... 139s Setting up python3-mpi4py (4.0.0-9) ... 139s Setting up gfortran (4:14.1.0-2ubuntu1) ... 139s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 139s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 139s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 139s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 139s Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 139s Setting up libhdf5-openmpi-fortran-102t64:amd64 (1.10.10+repack-4ubuntu3) ... 139s Setting up libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 139s Setting up libopenmpi-dev:amd64 (5.0.5-6) ... 139s update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode 139s update-alternatives: warning: skip creation of /usr/lib/x86_64-linux-gnu/libmpi.so because associated file /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (of link group mpi-x86_64-linux-gnu) doesn't exist 139s Setting up libscalapack-openmpi2.2:amd64 (2.2.1-3.1ubuntu2) ... 139s Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... 139s Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5) ... 139s Setting up python3-ffc (2019.2.0~legacy20230509.35df986-3) ... 140s Setting up libfftw3-mpi-dev:amd64 (3.3.10-2fakesync1) ... 140s Setting up libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 140s Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5) ... 140s Setting up libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 140s Setting up libmumps-64pord-5.7:amd64 (5.7.3-3) ... 140s Setting up libmumps-5.7:amd64 (5.7.3-3) ... 140s Setting up libhypre-2.31.0:amd64 (2.31.0-1exp2) ... 140s Setting up libhypre64m-2.31.0:amd64 (2.31.0-1exp2) ... 140s Setting up libscalapack-openmpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 140s Setting up mpi-default-dev (1.17) ... 140s Setting up libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 140s Setting up libhypre64m-dev:amd64 (2.31.0-1exp2) ... 140s Setting up libscalapack-mpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 140s Setting up libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 140s update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 140s update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 140s Setting up libmumps64-dev:amd64 (5.7.3-3) ... 140s Setting up libmumps-dev:amd64 (5.7.3-3) ... 140s Setting up libscotch-dev (7.0.5-1ubuntu1) ... 140s Setting up libparpack2-dev:amd64 (3.9.1-1.1ubuntu1) ... 140s Setting up libpetsc-real3.21:amd64 (3.21.6+dfsg1-2ubuntu2) ... 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.21 (libpetsc.so.3.21) in auto mode 140s Setting up libhypre-dev:amd64 (2.31.0-1exp2) ... 140s Setting up libptscotch-dev (7.0.5-1ubuntu1) ... 140s Setting up libpetsc64-real3.21:amd64 (3.21.6+dfsg1-2ubuntu2) ... 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc64.so.3.21 (libpetsc64.so.3.21) in auto mode 140s Setting up libboost-mpi1.83-dev (1.83.0-3.2ubuntu3) ... 140s Setting up libboost-mpi-dev (1.83.0.2ubuntu1) ... 140s Setting up libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 140s Setting up python3-petsc4py-64-real3.21 (3.21.6-2ubuntu2) ... 140s Setting up libslepc64-real3.21 (3.21.2+dfsg1-2) ... 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64.so.3.21 (libslepc64.so.3.21) in auto mode 140s Setting up python3-petsc4py (3.21.6-2ubuntu2) ... 140s Setting up libslepc-real3.21 (3.21.2+dfsg1-2) ... 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.21 (libslepc.so.3.21) in auto mode 140s Setting up python3-petsc4py-real3.21 (3.21.6-2ubuntu2) ... 140s Setting up python3-petsc4py-real (3.21.6-2ubuntu2) ... 140s Setting up libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 140s Setting up libpetsc3.21-dev-common (3.21.6+dfsg1-2ubuntu2) ... 140s Setting up python3-slepc4py-real3.21 (3.21.2-1ubuntu2) ... 140s Setting up python3-petsc4py-64-real (3.21.6-2ubuntu2) ... 140s Setting up libpetsc64-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 140s update-alternatives: using /usr/lib/petscdir/petsc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode 140s update-alternatives: using /usr/lib/petscdir/petsc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/petscdir/64-3.21 (petsc64-3.21) in auto mode 140s Setting up libdolfin64-2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 140s Setting up python3-slepc4py-64-real3.21 (3.21.2-1ubuntu2) ... 140s Setting up libpetsc-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 140s update-alternatives: error: no alternatives for petsc 140s update-alternatives: using /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode 140s update-alternatives: using /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.21 (petsc3.21) in auto mode 140s Setting up libpetsc-real-dev (3.21.6+dfsg1-2ubuntu2) ... 140s Setting up python3-slepc4py (3.21.2-1ubuntu2) ... 140s Setting up python3-slepc4py-real (3.21.2-1ubuntu2) ... 140s Setting up python3-slepc4py-64-real (3.21.2-1ubuntu2) ... 140s Setting up libpetsc64-real-dev (3.21.6+dfsg1-2ubuntu2) ... 140s Setting up petsc64-dev (3.21.6+dfsg1-2ubuntu2) ... 140s Setting up libslepc-real3.21-dev (3.21.2+dfsg1-2) ... 140s update-alternatives: error: no alternatives for slepc 140s update-alternatives: using /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode 140s update-alternatives: using /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.21 (slepc3.21) in auto mode 140s Setting up libslepc64-real3.21-dev (3.21.2+dfsg1-2) ... 140s update-alternatives: using /usr/lib/slepcdir/slepc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode 140s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode 140s update-alternatives: using /usr/lib/slepcdir/slepc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.21 (slepc64-3.21) in auto mode 140s Setting up petsc-dev (3.21.6+dfsg1-2ubuntu2) ... 140s Setting up slepc-dev (3.21.2+dfsg1-2) ... 140s Setting up libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 140s Setting up slepc64-dev (3.21.2+dfsg1-2) ... 140s Setting up libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 140s Setting up python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 141s Setting up python3-dolfin-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 141s Setting up python3-dolfin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 141s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 141s x = list(map(float, re.split("[\s,]+", m.group(1)))) 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 141s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 141s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 141s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 141s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 141s x = list(map(float, re.split("[\s,]+", m.group(1)))) 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 141s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 141s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 141s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 141s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 141s Setting up dolfin-doc (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 141s Setting up dolfin-bin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 141s Setting up libheif-plugin-aomdec:amd64 (1.19.3-1) ... 141s Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ... 141s Setting up libheif1:amd64 (1.19.3-1) ... 141s Setting up libgd3:amd64 (2.3.3-12ubuntu3) ... 141s Setting up libgvc6 (2.42.4-2build3) ... 141s Setting up graphviz (2.42.4-2build3) ... 141s Processing triggers for libc-bin (2.40-1ubuntu3) ... 141s Processing triggers for systemd (256.5-2ubuntu4) ... 141s Processing triggers for man-db (2.13.0-1) ... 142s Processing triggers for install-info (7.1.1-1) ... 142s Processing triggers for sgml-base (1.31) ... 142s Setting up docutils-common (0.21.2+dfsg-2) ... 142s Processing triggers for sgml-base (1.31) ... 142s Setting up python3-docutils (0.21.2+dfsg-2) ... 143s Setting up python3-sphinx (7.4.7-4) ... 144s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 144s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 144s Setting up autopkgtest-satdep (0) ... 157s (Reading database ... 124620 files and directories currently installed.) 157s Removing autopkgtest-satdep (0) ... 158s autopkgtest [20:51:14]: test test-dolfin-cpp: [----------------------- 158s CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): 158s Compatibility with CMake < 3.10 will be removed from a future version of 158s CMake. 158s 158s Update the VERSION argument value or use a ... suffix to tell 158s CMake that the project does not need compatibility with older versions. 158s 158s 158s -- The C compiler identification is GNU 14.2.0 158s -- The CXX compiler identification is GNU 14.2.0 158s -- Detecting C compiler ABI info 158s -- Detecting C compiler ABI info - done 158s -- Check for working C compiler: /usr/bin/mpicc - skipped 158s -- Detecting C compile features 158s -- Detecting C compile features - done 158s -- Detecting CXX compiler ABI info 158s -- Detecting CXX compiler ABI info - done 158s -- Check for working CXX compiler: /usr/bin/c++ - skipped 158s -- Detecting CXX compile features 158s -- Detecting CXX compile features - done 158s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 158s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 158s --help-policy CMP0167" for policy details. Use the cmake_policy command to 158s set the policy and suppress this warning. 158s 158s Call Stack (most recent call first): 158s CMakeLists.txt:5 (include) 158s This warning is for project developers. Use -Wno-dev to suppress it. 158s 158s -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 158s -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' 158s -- Looking for sys/types.h 159s -- Looking for sys/types.h - found 159s -- Looking for stdint.h 159s -- Looking for stdint.h - found 159s -- Looking for stddef.h 159s -- Looking for stddef.h - found 159s -- Check size of PetscInt 159s -- Check size of PetscInt - done 159s -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' 159s CMake Warning (dev) at CMakeLists.txt:39 (find_package): 159s Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules 159s are removed. Run "cmake --help-policy CMP0148" for policy details. Use 159s the cmake_policy command to set the policy and suppress this warning. 159s 159s This warning is for project developers. Use -Wno-dev to suppress it. 159s 159s -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.7", minimum required is "3") 160s -- Found UFC: /usr/lib/python3/dist-packages/ffc/backends/ufc (Required is at least version "2019.2") 160s -- Generating form files in test directories. May take some time... 180s -- Configuring done (21.8s) 180s -- Generating done (0.0s) 180s -- Build files have been written to: /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests 180s /usr/bin/cmake -S/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp -B/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests --check-build-system CMakeFiles/Makefile.cmake 0 180s make -f CMakeFiles/Makefile2 unittests 180s make[1]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests' 180s /usr/bin/cmake -S/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp -B/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests --check-build-system CMakeFiles/Makefile.cmake 0 180s /usr/bin/cmake -E cmake_progress_start /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests/CMakeFiles 16 180s make -f CMakeFiles/Makefile2 CMakeFiles/unittests.dir/all 180s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests' 180s make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/depend 180s make[3]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests' 180s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" 180s make[3]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests' 180s make -f CMakeFiles/unittests.dir/build.make CMakeFiles/unittests.dir/build 180s make[3]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-unittests' 180s [ 6%] Building CXX object CMakeFiles/unittests.dir/function/Expression.cpp.o 180s [ 25%] Building CXX object CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o 180s [ 25%] Building CXX object CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o 180s [ 25%] Building CXX object CMakeFiles/unittests.dir/main.cpp.o 180s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/function/Expression.cpp.o -MF CMakeFiles/unittests.dir/function/Expression.cpp.o.d -o CMakeFiles/unittests.dir/function/Expression.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/function/Expression.cpp 180s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o -MF CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o.d -o CMakeFiles/unittests.dir/common/SubSystemsManager.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/common/SubSystemsManager.cpp 180s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/main.cpp 180s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o -MF CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o.d -o CMakeFiles/unittests.dir/geometry/ConvexTriangulation.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/geometry/ConvexTriangulation.cpp 180s [ 31%] Building CXX object CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o 180s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o -MF CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o.d -o CMakeFiles/unittests.dir/geometry/IntersectionConstruction.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/geometry/IntersectionConstruction.cpp 181s [ 37%] Building CXX object CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o 181s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o -MF CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o.d -o CMakeFiles/unittests.dir/io/XMLMeshData.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/io/XMLMeshData.cpp 183s [ 43%] Building CXX object CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o 183s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -std=c++11 -MD -MT CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o -MF CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o.d -o CMakeFiles/unittests.dir/io/XMLMeshValueCollection.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/io/XMLMeshValueCollection.cpp 184s [ 50%] Building CXX object CMakeFiles/unittests.dir/la/LinearOperator.cpp.o 184s /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -I/tmp/autopkgtest.8KRSRk/build.52a/src/test/unit/cpp/catch -isystem 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Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/mixed-poisson/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/navier-stokes/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/navier-stokes/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/neumann-poisson/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/neumann-poisson/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/nonlinear-poisson/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/nonlinear-poisson/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/nonmatching-interpolation/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/nonmatching-interpolation/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/periodic/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/periodic/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/poisson/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/poisson/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/singular-poisson/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/singular-poisson/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/stokes-iterative/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/stokes-iterative/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/stokes-taylor-hood/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/stokes-taylor-hood/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at documented/subdomains/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s documented/subdomains/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at undocumented/advection-diffusion/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s undocumented/advection-diffusion/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at undocumented/ale/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s undocumented/ale/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at undocumented/auto-adaptive-navier-stokes/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s undocumented/auto-adaptive-navier-stokes/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at undocumented/block-matrix/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s undocumented/block-matrix/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at undocumented/conditional/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s undocumented/conditional/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at undocumented/contact-vi-snes/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s undocumented/contact-vi-snes/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 198s CMake Deprecation Warning at undocumented/contact-vi-tao/cpp/CMakeLists.txt:6 (cmake_minimum_required): 198s Compatibility with CMake < 3.10 will be removed from a future version of 198s CMake. 198s 198s Update the VERSION argument value or use a ... suffix to tell 198s CMake that the project does not need compatibility with older versions. 198s 198s 198s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 198s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 198s --help-policy CMP0167" for policy details. Use the cmake_policy command to 198s set the policy and suppress this warning. 198s 198s Call Stack (most recent call first): 198s undocumented/contact-vi-tao/cpp/CMakeLists.txt:18 (include) 198s This warning is for project developers. Use -Wno-dev to suppress it. 198s 199s CMake Deprecation Warning at undocumented/curl-curl/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/curl-curl/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/dg-advection-diffusion/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/dg-advection-diffusion/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/dg-poisson/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/dg-poisson/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/elasticity/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/elasticity/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/elastodynamics/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/elastodynamics/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/eval/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/eval/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/extrapolation/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/extrapolation/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/functional/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/functional/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/gmg-poisson/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/gmg-poisson/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/lift-drag/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/lift-drag/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/mesh-quality/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/mesh-quality/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/meshfunction-refinement/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/meshfunction-refinement/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/multimesh-poisson/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/multimesh-poisson/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/multimesh-stokes/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/multimesh-stokes/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/nonmatching-projection/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/nonmatching-projection/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/parallel-refinement/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/parallel-refinement/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/parameters/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/parameters/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/poisson1D/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/poisson1D/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/poisson1D-in-2D/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/poisson1D-in-2D/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/poisson-disc/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/poisson-disc/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/refinement/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/refinement/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/spatial-coordinates/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/spatial-coordinates/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/submesh/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/submesh/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/sym-dirichlet-bc/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/sym-dirichlet-bc/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/time-series/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/time-series/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s CMake Deprecation Warning at undocumented/waveguide/cpp/CMakeLists.txt:6 (cmake_minimum_required): 199s Compatibility with CMake < 3.10 will be removed from a future version of 199s CMake. 199s 199s Update the VERSION argument value or use a ... suffix to tell 199s CMake that the project does not need compatibility with older versions. 199s 199s 199s CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): 199s Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake 199s --help-policy CMP0167" for policy details. Use the cmake_policy command to 199s set the policy and suppress this warning. 199s 199s Call Stack (most recent call first): 199s undocumented/waveguide/cpp/CMakeLists.txt:18 (include) 199s This warning is for project developers. Use -Wno-dev to suppress it. 199s 199s -- Configuring done (2.8s) 200s -- Generating done (0.2s) 200s -- Build files have been written to: /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo 200s /usr/bin/cmake -S/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo -B/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo --check-build-system CMakeFiles/Makefile.cmake 0 200s /usr/bin/cmake -E cmake_progress_start /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/CMakeFiles /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo//CMakeFiles/progress.marks 200s make -f CMakeFiles/Makefile2 all 200s make[1]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make -f documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/build.make documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/depend 200s make -f documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build.make documented/bcs/cpp/CMakeFiles/demo_bcs.dir/depend 200s make -f documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/build.make documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/depend 200s make -f documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/build.make documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/depend 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/auto-adaptive-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/auto-adaptive-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/DependInfo.cmake "--color=" 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/bcs/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/bcs/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/bcs/cpp/CMakeFiles/demo_bcs.dir/DependInfo.cmake "--color=" 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/biharmonic/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/biharmonic/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/DependInfo.cmake "--color=" 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/built-in-meshes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/built-in-meshes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/DependInfo.cmake "--color=" 200s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make -f documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build.make documented/bcs/cpp/CMakeFiles/demo_bcs.dir/build 200s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make -f documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/build.make documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/build 200s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make -f documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/build.make documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/build 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s make -f documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/build.make documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/build 200s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 200s [ 1%] Building CXX object documented/bcs/cpp/CMakeFiles/demo_bcs.dir/main.cpp.o 200s [ 2%] Building CXX object documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o 200s [ 3%] Building CXX object documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/main.cpp.o 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/bcs/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/bcs/cpp/CMakeFiles/demo_bcs.dir/main.cpp.o -MF CMakeFiles/demo_bcs.dir/main.cpp.o.d -o CMakeFiles/demo_bcs.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/bcs/cpp/main.cpp 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/auto-adaptive-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/auto-adaptive-poisson/cpp/CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o -MF CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/auto-adaptive-poisson/cpp/main.cpp 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/biharmonic/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/biharmonic/cpp/CMakeFiles/demo_biharmonic.dir/main.cpp.o -MF CMakeFiles/demo_biharmonic.dir/main.cpp.o.d -o CMakeFiles/demo_biharmonic.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/biharmonic/cpp/main.cpp 200s [ 4%] Building CXX object documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/main.cpp.o 200s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/built-in-meshes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/built-in-meshes/cpp/CMakeFiles/demo_built-in-meshes.dir/main.cpp.o -MF CMakeFiles/demo_built-in-meshes.dir/main.cpp.o.d -o CMakeFiles/demo_built-in-meshes.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/built-in-meshes/cpp/main.cpp 204s [ 5%] Linking CXX executable demo_built-in-meshes 204s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/built-in-meshes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_built-in-meshes.dir/link.txt --verbose=1 204s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_built-in-meshes.dir/link.d "CMakeFiles/demo_built-in-meshes.dir/main.cpp.o" -o demo_built-in-meshes -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 204s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 204s [ 5%] Built target demo_built-in-meshes 204s make -f documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build.make documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/depend 204s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 204s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/DependInfo.cmake "--color=" 204s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 204s make -f documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build.make documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/build 204s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 204s [ 6%] Building CXX object documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o 204s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o -MF CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o.d -o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp/CahnHilliard2D.cpp 207s [ 7%] Linking CXX executable demo_bcs 207s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/bcs/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_bcs.dir/link.txt --verbose=1 207s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_bcs.dir/link.d CMakeFiles/demo_bcs.dir/main.cpp.o -o demo_bcs -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 207s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 207s [ 7%] Built target demo_bcs 207s make -f documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/build.make documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/depend 207s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 207s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/eigenvalue/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/eigenvalue/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/DependInfo.cmake "--color=" 207s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 207s make -f documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/build.make documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/build 207s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 207s [ 8%] Building CXX object documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/main.cpp.o 207s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/eigenvalue/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/eigenvalue/cpp/CMakeFiles/demo_eigenvalue.dir/main.cpp.o -MF CMakeFiles/demo_eigenvalue.dir/main.cpp.o.d -o CMakeFiles/demo_eigenvalue.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/eigenvalue/cpp/main.cpp 208s [ 9%] Building CXX object documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o 208s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o -MF CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o.d -o CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp/CahnHilliard3D.cpp 208s [ 10%] Linking CXX executable demo_biharmonic 208s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/biharmonic/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_biharmonic.dir/link.txt --verbose=1 208s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_biharmonic.dir/link.d CMakeFiles/demo_biharmonic.dir/main.cpp.o -o demo_biharmonic -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 208s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 208s [ 10%] Built target demo_biharmonic 208s [ 11%] Building CXX object documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o 208s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/cahn-hilliard/cpp/CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o -MF CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o.d -o CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp/main.cpp 212s [ 12%] Linking CXX executable demo_auto-adaptive-poisson 212s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/auto-adaptive-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-poisson.dir/link.txt --verbose=1 212s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_auto-adaptive-poisson.dir/link.d "CMakeFiles/demo_auto-adaptive-poisson.dir/main.cpp.o" -o demo_auto-adaptive-poisson -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 212s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 212s [ 12%] Built target demo_auto-adaptive-poisson 212s make -f documented/hyperelasticity/cpp/CMakeFiles/demo_hyperelasticity.dir/build.make 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'/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 212s [ 13%] Building CXX object documented/hyperelasticity/cpp/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o 212s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/hyperelasticity/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/hyperelasticity/cpp/CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -MF CMakeFiles/demo_hyperelasticity.dir/main.cpp.o.d -o CMakeFiles/demo_hyperelasticity.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/hyperelasticity/cpp/main.cpp 213s make -f documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/build.make documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/depend 213s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 213s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/mixed-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/mixed-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/DependInfo.cmake "--color=" 213s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 213s make -f documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/build.make documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/build 213s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 213s [ 14%] Building CXX object documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/main.cpp.o 213s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/mixed-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/mixed-poisson/cpp/CMakeFiles/demo_mixed-poisson.dir/main.cpp.o -MF CMakeFiles/demo_mixed-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_mixed-poisson.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/mixed-poisson/cpp/main.cpp 214s [ 15%] Linking CXX executable demo_eigenvalue 214s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/eigenvalue/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_eigenvalue.dir/link.txt --verbose=1 214s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_eigenvalue.dir/link.d CMakeFiles/demo_eigenvalue.dir/main.cpp.o -o demo_eigenvalue -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 214s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 214s [ 15%] Built target demo_eigenvalue 214s make -f documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/build.make documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/depend 214s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 214s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/navier-stokes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/navier-stokes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/DependInfo.cmake "--color=" 214s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 214s make -f documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/build.make documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/build 214s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 214s [ 16%] Building CXX object documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/main.cpp.o 214s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/navier-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/navier-stokes/cpp/CMakeFiles/demo_navier-stokes.dir/main.cpp.o -MF CMakeFiles/demo_navier-stokes.dir/main.cpp.o.d -o CMakeFiles/demo_navier-stokes.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/navier-stokes/cpp/main.cpp 214s [ 17%] Linking CXX executable demo_cahn-hilliard 214s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/cahn-hilliard/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_cahn-hilliard.dir/link.txt --verbose=1 215s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_cahn-hilliard.dir/link.d "CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard2D.cpp.o" "CMakeFiles/demo_cahn-hilliard.dir/CahnHilliard3D.cpp.o" "CMakeFiles/demo_cahn-hilliard.dir/main.cpp.o" -o demo_cahn-hilliard -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 215s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 215s [ 17%] Built target demo_cahn-hilliard 215s make -f documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/build.make documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/depend 215s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 215s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/neumann-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/neumann-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/neumann-poisson/cpp/CMakeFiles/demo_neumann-poisson.dir/DependInfo.cmake "--color=" 215s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 215s make -f 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/usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 220s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 220s [ 19%] Built target demo_hyperelasticity 220s make -f documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/build.make documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/depend 220s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 220s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonlinear-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonlinear-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/DependInfo.cmake "--color=" 220s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 220s make -f documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/build.make documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/build 220s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 220s [ 20%] Building CXX object documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o 220s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonlinear-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/nonlinear-poisson/cpp/CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o -MF CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonlinear-poisson/cpp/main.cpp 220s [ 21%] Linking CXX executable demo_mixed-poisson 220s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/mixed-poisson/cpp && 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/usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 221s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 221s [ 22%] Built target demo_mixed-poisson 221s make -f documented/nonmatching-interpolation/cpp/CMakeFiles/demo_nonmatching-interpolation.dir/build.make documented/nonmatching-interpolation/cpp/CMakeFiles/demo_nonmatching-interpolation.dir/depend 221s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 221s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonmatching-interpolation/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo 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-DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/nonmatching-interpolation/cpp/CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o -MF CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o.d -o CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonmatching-interpolation/cpp/main.cpp 221s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_neumann-poisson.dir/link.d "CMakeFiles/demo_neumann-poisson.dir/main.cpp.o" -o demo_neumann-poisson -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 221s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 221s [ 23%] Built target demo_neumann-poisson 221s make -f documented/periodic/cpp/CMakeFiles/demo_periodic.dir/build.make documented/periodic/cpp/CMakeFiles/demo_periodic.dir/depend 221s make[2]: 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/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/periodic/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/periodic/cpp/CMakeFiles/demo_periodic.dir/main.cpp.o -MF CMakeFiles/demo_periodic.dir/main.cpp.o.d -o CMakeFiles/demo_periodic.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/periodic/cpp/main.cpp 227s [ 25%] Linking CXX executable demo_nonlinear-poisson 227s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonlinear-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonlinear-poisson.dir/link.txt --verbose=1 227s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_nonlinear-poisson.dir/link.d "CMakeFiles/demo_nonlinear-poisson.dir/main.cpp.o" -o demo_nonlinear-poisson -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 227s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s [ 25%] Built target demo_nonlinear-poisson 227s make -f documented/poisson/cpp/CMakeFiles/demo_poisson.dir/build.make documented/poisson/cpp/CMakeFiles/demo_poisson.dir/depend 227s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/poisson/cpp/CMakeFiles/demo_poisson.dir/DependInfo.cmake "--color=" 227s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s make -f documented/poisson/cpp/CMakeFiles/demo_poisson.dir/build.make documented/poisson/cpp/CMakeFiles/demo_poisson.dir/build 227s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s [ 26%] Building CXX object documented/poisson/cpp/CMakeFiles/demo_poisson.dir/main.cpp.o 227s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/poisson/cpp/CMakeFiles/demo_poisson.dir/main.cpp.o -MF CMakeFiles/demo_poisson.dir/main.cpp.o.d -o CMakeFiles/demo_poisson.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/poisson/cpp/main.cpp 227s [ 27%] Linking CXX executable demo_nonmatching-interpolation 227s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/nonmatching-interpolation/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_nonmatching-interpolation.dir/link.txt --verbose=1 227s [ 28%] Linking CXX executable demo_periodic 227s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/periodic/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_periodic.dir/link.txt --verbose=1 227s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_nonmatching-interpolation.dir/link.d "CMakeFiles/demo_nonmatching-interpolation.dir/main.cpp.o" -o demo_nonmatching-interpolation -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 227s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s [ 28%] Built target demo_nonmatching-interpolation 227s make -f documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/build.make documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/depend 227s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/singular-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/singular-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/DependInfo.cmake "--color=" 227s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s make -f documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/build.make documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/build 227s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 227s [ 29%] Building CXX object documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/main.cpp.o 227s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/singular-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/singular-poisson/cpp/CMakeFiles/demo_singular-poisson.dir/main.cpp.o -MF CMakeFiles/demo_singular-poisson.dir/main.cpp.o.d -o 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/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 228s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 228s [ 29%] Built target demo_periodic 228s make -f documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/build.make documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/depend 228s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 228s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-iterative/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-iterative/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/DependInfo.cmake "--color=" 228s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 228s make -f documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/build.make documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/build 228s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 228s [ 30%] Building CXX object documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/main.cpp.o 228s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-iterative/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/stokes-iterative/cpp/CMakeFiles/demo_stokes-iterative.dir/main.cpp.o -MF CMakeFiles/demo_stokes-iterative.dir/main.cpp.o.d -o CMakeFiles/demo_stokes-iterative.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-iterative/cpp/main.cpp 231s [ 31%] Linking CXX executable demo_navier-stokes 231s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_navier-stokes.dir/link.txt --verbose=1 231s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_navier-stokes.dir/link.d "CMakeFiles/demo_navier-stokes.dir/main.cpp.o" -o demo_navier-stokes -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 231s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 231s [ 31%] Built target demo_navier-stokes 231s make -f documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/build.make documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/depend 231s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 231s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-taylor-hood/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-taylor-hood/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/DependInfo.cmake "--color=" 231s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 231s make -f documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/build.make documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/build 231s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 231s [ 32%] Building CXX object documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o 231s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-taylor-hood/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/stokes-taylor-hood/cpp/CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o -MF CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o.d -o CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-taylor-hood/cpp/main.cpp 233s [ 33%] Linking CXX executable demo_poisson 233s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson.dir/link.txt --verbose=1 234s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_poisson.dir/link.d CMakeFiles/demo_poisson.dir/main.cpp.o -o demo_poisson -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so 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'/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 234s make -f documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/build.make documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/build 234s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 234s [ 34%] Building CXX object documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/main.cpp.o 234s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/subdomains/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT documented/subdomains/cpp/CMakeFiles/demo_subdomains.dir/main.cpp.o -MF CMakeFiles/demo_subdomains.dir/main.cpp.o.d -o CMakeFiles/demo_subdomains.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/subdomains/cpp/main.cpp 234s [ 35%] Linking CXX executable demo_singular-poisson 234s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/singular-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_singular-poisson.dir/link.txt --verbose=1 234s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_singular-poisson.dir/link.d "CMakeFiles/demo_singular-poisson.dir/main.cpp.o" -o demo_singular-poisson -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 234s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 234s [ 35%] Built target demo_singular-poisson 234s make -f undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/build.make undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/depend 234s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 234s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/advection-diffusion/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/advection-diffusion/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/DependInfo.cmake "--color=" 234s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 234s make -f undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/build.make undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/build 234s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 234s [ 35%] Building CXX object undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/main.cpp.o 234s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/advection-diffusion/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/advection-diffusion/cpp/CMakeFiles/demo_advection-diffusion.dir/main.cpp.o -MF CMakeFiles/demo_advection-diffusion.dir/main.cpp.o.d -o CMakeFiles/demo_advection-diffusion.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/advection-diffusion/cpp/main.cpp 239s [ 36%] Linking CXX executable demo_stokes-iterative 239s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-iterative/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_stokes-iterative.dir/link.txt --verbose=1 239s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_stokes-iterative.dir/link.d "CMakeFiles/demo_stokes-iterative.dir/main.cpp.o" -o demo_stokes-iterative -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 239s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s [ 36%] Built target demo_stokes-iterative 239s make -f undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build.make undocumented/ale/cpp/CMakeFiles/demo_ale.dir/depend 239s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/ale/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/ale/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/ale/cpp/CMakeFiles/demo_ale.dir/DependInfo.cmake "--color=" 239s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s make -f undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build.make undocumented/ale/cpp/CMakeFiles/demo_ale.dir/build 239s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s [ 37%] Building CXX object undocumented/ale/cpp/CMakeFiles/demo_ale.dir/main.cpp.o 239s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/ale/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/ale/cpp/CMakeFiles/demo_ale.dir/main.cpp.o -MF CMakeFiles/demo_ale.dir/main.cpp.o.d -o CMakeFiles/demo_ale.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/ale/cpp/main.cpp 239s [ 38%] Linking CXX executable demo_subdomains 239s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/subdomains/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_subdomains.dir/link.txt --verbose=1 239s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_subdomains.dir/link.d CMakeFiles/demo_subdomains.dir/main.cpp.o -o demo_subdomains -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 239s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s [ 38%] Built target demo_subdomains 239s make -f undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build.make undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/depend 239s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/DependInfo.cmake "--color=" 239s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s make -f undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build.make undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/build 239s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 239s [ 39%] Building CXX object undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o 239s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/auto-adaptive-navier-stokes/cpp/CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o -MF CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o.d -o CMakeFiles/demo_auto-adaptive-navier-stokes.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp/main.cpp 241s [ 40%] Linking CXX executable demo_stokes-taylor-hood 241s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/documented/stokes-taylor-hood/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_stokes-taylor-hood.dir/link.txt --verbose=1 241s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_stokes-taylor-hood.dir/link.d "CMakeFiles/demo_stokes-taylor-hood.dir/main.cpp.o" -o demo_stokes-taylor-hood -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 241s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 241s [ 40%] Built target demo_stokes-taylor-hood 241s make -f undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/build.make undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/depend 241s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 241s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/block-matrix/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/block-matrix/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/DependInfo.cmake "--color=" 241s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 241s make -f undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/build.make undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/build 241s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 241s [ 41%] Building CXX object undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/main.cpp.o 241s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/block-matrix/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/block-matrix/cpp/CMakeFiles/demo_block-matrix.dir/main.cpp.o -MF CMakeFiles/demo_block-matrix.dir/main.cpp.o.d -o CMakeFiles/demo_block-matrix.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/block-matrix/cpp/main.cpp 243s [ 42%] Linking CXX executable demo_ale 243s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/ale/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_ale.dir/link.txt --verbose=1 244s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_ale.dir/link.d CMakeFiles/demo_ale.dir/main.cpp.o -o demo_ale 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make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 244s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/conditional/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/conditional/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/DependInfo.cmake "--color=" 244s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 244s make -f undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build.make undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/build 244s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 244s [ 43%] Building CXX object undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/main.cpp.o 244s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/conditional/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/conditional/cpp/CMakeFiles/demo_conditional.dir/main.cpp.o -MF CMakeFiles/demo_conditional.dir/main.cpp.o.d -o CMakeFiles/demo_conditional.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/conditional/cpp/main.cpp 245s [ 44%] Linking CXX executable demo_advection-diffusion 245s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_advection-diffusion.dir/link.txt --verbose=1 246s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_advection-diffusion.dir/link.d "CMakeFiles/demo_advection-diffusion.dir/main.cpp.o" -o demo_advection-diffusion -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 246s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 246s [ 44%] Built target demo_advection-diffusion 246s make -f undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build.make undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/depend 246s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 246s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-snes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-snes/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/DependInfo.cmake "--color=" 246s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 246s make -f undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build.make undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/build 246s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 246s [ 45%] Building CXX object undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o 246s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-snes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/contact-vi-snes/cpp/CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o -MF CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o.d -o CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-snes/cpp/main.cpp 248s [ 46%] Linking CXX executable demo_block-matrix 248s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/block-matrix/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_block-matrix.dir/link.txt --verbose=1 248s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_block-matrix.dir/link.d "CMakeFiles/demo_block-matrix.dir/main.cpp.o" -o demo_block-matrix -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 248s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 248s [ 46%] Built target demo_block-matrix 248s make -f undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build.make undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/depend 248s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 248s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-tao/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-tao/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/DependInfo.cmake "--color=" 248s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 248s make -f undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build.make undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/build 248s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 248s [ 47%] Building CXX object undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o 248s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-tao/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/contact-vi-tao/cpp/CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o -MF CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o.d -o CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-tao/cpp/main.cpp 251s [ 48%] Linking CXX executable demo_conditional 251s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/conditional/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_conditional.dir/link.txt --verbose=1 251s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_conditional.dir/link.d CMakeFiles/demo_conditional.dir/main.cpp.o -o demo_conditional -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 251s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 251s [ 48%] Built target demo_conditional 251s make -f undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build.make undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/depend 251s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 251s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/curl-curl/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/curl-curl/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/DependInfo.cmake "--color=" 251s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 251s make -f undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build.make undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/build 251s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 251s [ 48%] Building CXX object undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/main.cpp.o 251s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/curl-curl/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/curl-curl/cpp/CMakeFiles/demo_curl-curl.dir/main.cpp.o -MF CMakeFiles/demo_curl-curl.dir/main.cpp.o.d -o CMakeFiles/demo_curl-curl.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/curl-curl/cpp/main.cpp 252s [ 49%] Linking CXX executable demo_contact-vi-snes 252s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-snes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_contact-vi-snes.dir/link.txt --verbose=1 253s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_contact-vi-snes.dir/link.d "CMakeFiles/demo_contact-vi-snes.dir/main.cpp.o" -o demo_contact-vi-snes -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 253s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 253s [ 49%] Built target demo_contact-vi-snes 253s make -f undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build.make undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/depend 253s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 253s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/DependInfo.cmake "--color=" 253s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 253s make -f undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build.make undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/build 253s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 253s [ 50%] Building CXX object undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o 253s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/dg-advection-diffusion/cpp/CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o -MF CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o.d -o CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp/main.cpp 255s [ 51%] Linking CXX executable demo_contact-vi-tao 255s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/contact-vi-tao/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_contact-vi-tao.dir/link.txt --verbose=1 255s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_contact-vi-tao.dir/link.d "CMakeFiles/demo_contact-vi-tao.dir/main.cpp.o" -o demo_contact-vi-tao -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 255s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 255s [ 51%] Built target demo_contact-vi-tao 255s make -f undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build.make undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/depend 255s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 255s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/DependInfo.cmake "--color=" 255s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 255s make -f undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build.make undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/build 255s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 255s [ 52%] Building CXX object undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/main.cpp.o 255s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/dg-poisson/cpp/CMakeFiles/demo_dg-poisson.dir/main.cpp.o -MF CMakeFiles/demo_dg-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_dg-poisson.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-poisson/cpp/main.cpp 262s [ 53%] Linking CXX executable demo_dg-poisson 262s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-poisson/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-poisson.dir/link.txt --verbose=1 262s [ 54%] Linking CXX executable demo_curl-curl 262s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/curl-curl/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_curl-curl.dir/link.txt --verbose=1 263s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_dg-poisson.dir/link.d "CMakeFiles/demo_dg-poisson.dir/main.cpp.o" -o demo_dg-poisson -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 263s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s [ 54%] Built target demo_dg-poisson 263s make -f undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build.make undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/depend 263s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elasticity/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elasticity/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/DependInfo.cmake "--color=" 263s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s make -f undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build.make undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/build 263s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s [ 55%] Building CXX object undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/main.cpp.o 263s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elasticity/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/elasticity/cpp/CMakeFiles/demo_elasticity.dir/main.cpp.o -MF CMakeFiles/demo_elasticity.dir/main.cpp.o.d -o CMakeFiles/demo_elasticity.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elasticity/cpp/main.cpp 263s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_curl-curl.dir/link.d "CMakeFiles/demo_curl-curl.dir/main.cpp.o" -o demo_curl-curl -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 263s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s [ 55%] Built target demo_curl-curl 263s make -f undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/depend 263s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elastodynamics/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elastodynamics/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/DependInfo.cmake "--color=" 263s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s make -f undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build.make undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/build 263s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 263s [ 56%] Building CXX object undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/main.cpp.o 263s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elastodynamics/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/elastodynamics/cpp/CMakeFiles/demo_elastodynamics.dir/main.cpp.o -MF CMakeFiles/demo_elastodynamics.dir/main.cpp.o.d -o CMakeFiles/demo_elastodynamics.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elastodynamics/cpp/main.cpp 264s [ 57%] Linking CXX executable demo_auto-adaptive-navier-stokes 264s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/auto-adaptive-navier-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_auto-adaptive-navier-stokes.dir/link.txt --verbose=1 264s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG 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target demo_auto-adaptive-navier-stokes 264s make -f undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make undocumented/eval/cpp/CMakeFiles/demo_eval.dir/depend 264s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 264s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/eval/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/eval/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/eval/cpp/CMakeFiles/demo_eval.dir/DependInfo.cmake "--color=" 264s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 264s make -f undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build.make undocumented/eval/cpp/CMakeFiles/demo_eval.dir/build 264s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 264s [ 58%] Building CXX object undocumented/eval/cpp/CMakeFiles/demo_eval.dir/main.cpp.o 264s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/eval/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/eval/cpp/CMakeFiles/demo_eval.dir/main.cpp.o -MF CMakeFiles/demo_eval.dir/main.cpp.o.d -o CMakeFiles/demo_eval.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/eval/cpp/main.cpp 265s [ 59%] Linking CXX executable demo_dg-advection-diffusion 265s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/dg-advection-diffusion/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_dg-advection-diffusion.dir/link.txt --verbose=1 266s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_dg-advection-diffusion.dir/link.d "CMakeFiles/demo_dg-advection-diffusion.dir/main.cpp.o" -o demo_dg-advection-diffusion -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 266s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 266s [ 59%] Built target demo_dg-advection-diffusion 266s make -f undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build.make undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/depend 266s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 266s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/extrapolation/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/extrapolation/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/DependInfo.cmake "--color=" 266s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 266s make -f undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build.make undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/build 266s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 266s [ 60%] Building CXX object undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/main.cpp.o 266s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/extrapolation/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/extrapolation/cpp/CMakeFiles/demo_extrapolation.dir/main.cpp.o -MF CMakeFiles/demo_extrapolation.dir/main.cpp.o.d -o CMakeFiles/demo_extrapolation.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/extrapolation/cpp/main.cpp 271s [ 61%] Linking CXX executable demo_elastodynamics 271s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elastodynamics/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_elastodynamics.dir/link.txt --verbose=1 272s [ 62%] Linking CXX executable demo_elasticity 272s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/elasticity/cpp && 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Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s [ 62%] Built target demo_elastodynamics 272s make -f undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build.make undocumented/functional/cpp/CMakeFiles/demo_functional.dir/depend 272s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/functional/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/functional/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/functional/cpp/CMakeFiles/demo_functional.dir/DependInfo.cmake "--color=" 272s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s make -f undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build.make undocumented/functional/cpp/CMakeFiles/demo_functional.dir/build 272s [ 63%] Linking CXX executable demo_extrapolation 272s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/extrapolation/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_extrapolation.dir/link.txt --verbose=1 272s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s [ 64%] Building CXX object undocumented/functional/cpp/CMakeFiles/demo_functional.dir/main.cpp.o 272s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/functional/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/functional/cpp/CMakeFiles/demo_functional.dir/main.cpp.o -MF CMakeFiles/demo_functional.dir/main.cpp.o.d -o CMakeFiles/demo_functional.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/functional/cpp/main.cpp 272s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_elasticity.dir/link.d CMakeFiles/demo_elasticity.dir/main.cpp.o -o demo_elasticity -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so 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/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/gmg-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/DependInfo.cmake "--color=" 272s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s make -f undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build.make undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/build 272s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s [ 65%] Building CXX object undocumented/gmg-poisson/cpp/CMakeFiles/demo_gmg-poisson.dir/main.cpp.o 272s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/gmg-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem 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undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/depend 272s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/lift-drag/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/lift-drag/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/DependInfo.cmake "--color=" 272s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s make -f undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build.make undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/build 272s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s [ 67%] Building CXX object undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/main.cpp.o 272s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/lift-drag/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/lift-drag/cpp/CMakeFiles/demo_lift-drag.dir/main.cpp.o -MF CMakeFiles/demo_lift-drag.dir/main.cpp.o.d -o CMakeFiles/demo_lift-drag.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/lift-drag/cpp/main.cpp 272s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_eval.dir/link.d CMakeFiles/demo_eval.dir/main.cpp.o -o demo_eval -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 272s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 272s [ 67%] Built target demo_eval 272s make -f 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/usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 277s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 277s [ 69%] Built target demo_mesh-quality 277s make -f undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/depend 277s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 277s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/meshfunction-refinement/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/meshfunction-refinement/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/DependInfo.cmake "--color=" 277s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 277s make -f undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build.make undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/build 277s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 277s [ 69%] Building CXX object undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o 277s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/meshfunction-refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/meshfunction-refinement/cpp/CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -MF CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o.d -o CMakeFiles/demo_meshfunction-refinement.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/meshfunction-refinement/cpp/main.cpp 278s [ 70%] Linking CXX executable demo_functional 278s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/functional/cpp && /usr/bin/cmake -E cmake_link_script 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/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 279s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 279s [ 72%] Built target demo_functional 279s make -f undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build.make undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/depend 279s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 279s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/multimesh-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/multimesh-poisson/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/DependInfo.cmake "--color=" 279s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 279s make -f undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build.make undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/build 279s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 279s [ 73%] Building CXX object undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o 279s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/multimesh-poisson/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/multimesh-poisson/cpp/CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -MF CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o.d -o CMakeFiles/demo_multimesh-poisson.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/multimesh-poisson/cpp/main.cpp 279s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_lift-drag.dir/link.d "CMakeFiles/demo_lift-drag.dir/main.cpp.o" -o demo_lift-drag 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'/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 279s [ 74%] Building CXX object undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o 279s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/multimesh-stokes/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/multimesh-stokes/cpp/CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o -MF CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o.d -o 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"--color=" 279s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 279s make -f undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build.make undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/build 279s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 279s [ 75%] Building CXX object undocumented/nonmatching-projection/cpp/CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o 279s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/nonmatching-projection/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi 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-isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/parameters/cpp/CMakeFiles/demo_parameters.dir/main.cpp.o -MF CMakeFiles/demo_parameters.dir/main.cpp.o.d -o CMakeFiles/demo_parameters.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/parameters/cpp/main.cpp 288s [ 80%] Linking CXX executable demo_parallel-refinement 288s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/parallel-refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parallel-refinement.dir/link.txt --verbose=1 288s [ 81%] Linking CXX executable demo_nonmatching-projection 288s cd 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/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 288s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s [ 81%] Built target demo_parallel-refinement 288s make -f undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build.make undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/depend 288s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/DependInfo.cmake "--color=" 288s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s make -f undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build.make undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/build 288s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s [ 82%] Building CXX object undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/main.cpp.o 288s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/poisson1D/cpp/CMakeFiles/demo_poisson1D.dir/main.cpp.o -MF CMakeFiles/demo_poisson1D.dir/main.cpp.o.d -o CMakeFiles/demo_poisson1D.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D/cpp/main.cpp 288s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_nonmatching-projection.dir/link.d "CMakeFiles/demo_nonmatching-projection.dir/main.cpp.o" -o demo_nonmatching-projection -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 288s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s [ 82%] Built target demo_nonmatching-projection 288s make -f undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/depend 288s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/DependInfo.cmake "--color=" 288s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s make -f undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build.make undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/build 288s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 288s [ 83%] Building CXX object undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o 288s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/poisson1D-in-2D/cpp/CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -MF CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o.d -o CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp/main.cpp 291s [ 84%] Linking CXX executable demo_multimesh-stokes 291s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/multimesh-stokes/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_multimesh-stokes.dir/link.txt --verbose=1 291s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_multimesh-stokes.dir/link.d "CMakeFiles/demo_multimesh-stokes.dir/main.cpp.o" -o demo_multimesh-stokes -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 291s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 291s [ 84%] Built target demo_multimesh-stokes 291s make -f 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Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 291s [ 84%] Building CXX object undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/main.cpp.o 291s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson-disc/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/poisson-disc/cpp/CMakeFiles/demo_poisson-disc.dir/main.cpp.o -MF CMakeFiles/demo_poisson-disc.dir/main.cpp.o.d -o CMakeFiles/demo_poisson-disc.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson-disc/cpp/main.cpp 291s [ 85%] Linking CXX executable demo_parameters 291s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/parameters/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_parameters.dir/link.txt --verbose=1 291s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_parameters.dir/link.d CMakeFiles/demo_parameters.dir/main.cpp.o -o demo_parameters -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 291s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 291s [ 85%] Built target demo_parameters 291s make -f undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/depend 291s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 291s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/refinement/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/refinement/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/DependInfo.cmake "--color=" 291s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 291s make -f undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build.make undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/build 291s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 291s [ 86%] Building CXX object undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/main.cpp.o 291s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/refinement/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/refinement/cpp/CMakeFiles/demo_refinement.dir/main.cpp.o -MF CMakeFiles/demo_refinement.dir/main.cpp.o.d -o CMakeFiles/demo_refinement.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/refinement/cpp/main.cpp 294s [ 87%] Linking CXX executable demo_poisson1D 294s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D.dir/link.txt --verbose=1 294s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_poisson1D.dir/link.d CMakeFiles/demo_poisson1D.dir/main.cpp.o -o demo_poisson1D -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 294s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s [ 87%] Built target demo_poisson1D 294s make -f undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/depend 294s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/spatial-coordinates/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/spatial-coordinates/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/DependInfo.cmake "--color=" 294s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s make -f undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build.make undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/build 294s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s [ 88%] Building CXX object undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o 294s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/spatial-coordinates/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/spatial-coordinates/cpp/CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -MF CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o.d -o CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/spatial-coordinates/cpp/main.cpp 294s [ 89%] Linking CXX executable demo_poisson1D-in-2D 294s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson1D-in-2D/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson1D-in-2D.dir/link.txt --verbose=1 294s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_poisson1D-in-2D.dir/link.d "CMakeFiles/demo_poisson1D-in-2D.dir/main.cpp.o" -o demo_poisson1D-in-2D -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 294s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s [ 89%] Built target demo_poisson1D-in-2D 294s make -f undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/depend 294s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/submesh/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/submesh/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/DependInfo.cmake "--color=" 294s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s make -f undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build.make undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/build 294s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 294s [ 90%] Building CXX object undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/main.cpp.o 294s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/submesh/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/submesh/cpp/CMakeFiles/demo_submesh.dir/main.cpp.o -MF CMakeFiles/demo_submesh.dir/main.cpp.o.d -o CMakeFiles/demo_submesh.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/submesh/cpp/main.cpp 296s [ 91%] Linking CXX executable demo_refinement 296s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/refinement/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_refinement.dir/link.txt --verbose=1 297s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_refinement.dir/link.d CMakeFiles/demo_refinement.dir/main.cpp.o -o demo_refinement -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 297s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 297s [ 91%] Built target demo_refinement 297s make -f undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/depend 297s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 297s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/DependInfo.cmake "--color=" 297s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 297s make -f undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build.make undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/build 297s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 297s [ 92%] Building CXX object undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o 297s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/sym-dirichlet-bc/cpp/CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -MF CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o.d -o CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp/main.cpp 299s [ 93%] Linking CXX executable demo_poisson-disc 299s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/poisson-disc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_poisson-disc.dir/link.txt --verbose=1 299s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_poisson-disc.dir/link.d "CMakeFiles/demo_poisson-disc.dir/main.cpp.o" -o demo_poisson-disc -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 299s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 299s [ 93%] Built target demo_poisson-disc 299s make -f undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/depend 299s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 299s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/time-series/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/time-series/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/DependInfo.cmake "--color=" 299s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 299s make -f undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build.make undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/build 299s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 299s [ 94%] Building CXX object undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/main.cpp.o 299s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/time-series/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/time-series/cpp/CMakeFiles/demo_time-series.dir/main.cpp.o -MF CMakeFiles/demo_time-series.dir/main.cpp.o.d -o CMakeFiles/demo_time-series.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/time-series/cpp/main.cpp 299s [ 95%] Linking CXX executable demo_submesh 299s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/submesh/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_submesh.dir/link.txt --verbose=1 300s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_submesh.dir/link.d CMakeFiles/demo_submesh.dir/main.cpp.o -o demo_submesh -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 300s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 300s [ 95%] Built target demo_submesh 300s make -f undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/depend 300s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 300s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/waveguide/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/waveguide/cpp /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/DependInfo.cmake "--color=" 300s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 300s make -f undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build.make undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/build 300s make[2]: Entering directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 300s [ 96%] Building CXX object undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/main.cpp.o 300s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/waveguide/cpp && /usr/bin/c++ -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -I/dolfin -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -Wno-comment -O2 -g -DNDEBUG -std=c++11 -MD -MT undocumented/waveguide/cpp/CMakeFiles/demo_waveguide.dir/main.cpp.o -MF CMakeFiles/demo_waveguide.dir/main.cpp.o.d -o CMakeFiles/demo_waveguide.dir/main.cpp.o -c /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/waveguide/cpp/main.cpp 301s [ 97%] Linking CXX executable demo_spatial-coordinates 301s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/spatial-coordinates/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_spatial-coordinates.dir/link.txt --verbose=1 302s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_spatial-coordinates.dir/link.d "CMakeFiles/demo_spatial-coordinates.dir/main.cpp.o" -o demo_spatial-coordinates -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 302s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 302s [ 97%] Built target demo_spatial-coordinates 304s [ 98%] Linking CXX executable demo_sym-dirichlet-bc 304s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/sym-dirichlet-bc/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_sym-dirichlet-bc.dir/link.txt --verbose=1 304s [ 99%] Linking CXX executable demo_time-series 304s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/time-series/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_time-series.dir/link.txt --verbose=1 304s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_sym-dirichlet-bc.dir/link.d "CMakeFiles/demo_sym-dirichlet-bc.dir/main.cpp.o" -o demo_sym-dirichlet-bc -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 304s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 304s [ 99%] Built target demo_sym-dirichlet-bc 304s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_time-series.dir/link.d "CMakeFiles/demo_time-series.dir/main.cpp.o" -o demo_time-series -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 304s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 304s [ 99%] Built target demo_time-series 311s [100%] Linking CXX executable demo_waveguide 311s cd /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/undocumented/waveguide/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/demo_waveguide.dir/link.txt --verbose=1 311s /usr/bin/c++ -Wno-comment -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/demo_waveguide.dir/link.d CMakeFiles/demo_waveguide.dir/main.cpp.o -o demo_waveguide -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/openmpi:/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib:/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib:/usr/lib/x86_64-linux-gnu/openmpi/lib /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so 311s make[2]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 311s [100%] Built target demo_waveguide 311s make[1]: Leaving directory '/tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo' 311s /usr/bin/cmake -E cmake_progress_start /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo/CMakeFiles 0 311s running C++ demos (serial) 311s Test project /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo 311s Start 2: demo_nonmatching-interpolation_serial 311s Start 4: demo_eigenvalue_serial 311s Start 6: demo_nonlinear-poisson_serial 311s Start 8: demo_biharmonic_serial 311s 1/49 Test #6: demo_nonlinear-poisson_serial ............. Passed 0.31 sec 311s Start 10: demo_auto-adaptive-poisson_serial 311s 2/49 Test #2: demo_nonmatching-interpolation_serial ..... Passed 0.34 sec 311s Start 12: demo_subdomains_serial 311s 3/49 Test #4: demo_eigenvalue_serial .................... Passed 0.35 sec 311s Start 13: demo_mixed-poisson_serial 311s 4/49 Test #8: demo_biharmonic_serial .................... Passed 0.36 sec 311s Start 14: demo_hyperelasticity_serial 312s 5/49 Test #12: demo_subdomains_serial .................... Passed 0.33 sec 312s Start 16: demo_bcs_serial 312s 6/49 Test #13: demo_mixed-poisson_serial ................. Passed 0.36 sec 312s Start 18: demo_neumann-poisson_serial 312s 7/49 Test #18: demo_neumann-poisson_serial ............... Passed 0.33 sec 312s Start 20: demo_navier-stokes_serial 312s 8/49 Test #16: demo_bcs_serial ........................... Passed 0.53 sec 312s Start 22: demo_stokes-iterative_serial 313s 9/49 Test #20: demo_navier-stokes_serial ................. Passed 1.21 sec 313s Start 24: demo_poisson_serial 314s 10/49 Test #10: demo_auto-adaptive-poisson_serial ......... Passed 2.24 sec 314s Start 26: demo_singular-poisson_serial 314s 11/49 Test #24: demo_poisson_serial ....................... Passed 0.30 sec 314s Start 28: demo_built-in-meshes_serial 314s 12/49 Test #28: demo_built-in-meshes_serial ............... Passed 0.29 sec 314s Start 30: demo_periodic_serial 314s 13/49 Test #26: demo_singular-poisson_serial .............. Passed 0.40 sec 314s Start 32: demo_elastodynamics_serial 314s 14/49 Test #30: demo_periodic_serial ...................... Passed 0.31 sec 314s Start 34: demo_functional_serial 315s 15/49 Test #34: demo_functional_serial .................... Passed 0.29 sec 315s Start 36: demo_elasticity_serial 317s 16/49 Test #36: demo_elasticity_serial .................... Passed 2.32 sec 317s Start 38: demo_parameters_serial 317s 17/49 Test #38: demo_parameters_serial .................... Passed 0.29 sec 317s Start 40: demo_contact-vi-tao_serial 318s 18/49 Test #40: demo_contact-vi-tao_serial ................ Passed 0.34 sec 318s Start 42: demo_extrapolation_serial 318s 19/49 Test #42: demo_extrapolation_serial ................. Passed 0.30 sec 318s Start 44: demo_parallel-refinement_serial 318s 20/49 Test #44: demo_parallel-refinement_serial ........... Passed 0.29 sec 318s Start 46: demo_conditional_serial 318s 21/49 Test #46: demo_conditional_serial ................... Passed 0.39 sec 318s Start 48: demo_curl-curl_serial 321s 22/49 Test #14: demo_hyperelasticity_serial ............... Passed 9.38 sec 321s Start 50: demo_sym-dirichlet-bc_serial 321s 23/49 Test #48: demo_curl-curl_serial ..................... Passed 2.56 sec 321s Start 52: demo_block-matrix_serial 321s 24/49 Test #52: demo_block-matrix_serial .................. Passed 0.29 sec 321s Start 54: demo_submesh_serial 322s 25/49 Test #54: demo_submesh_serial ....................... Passed 0.30 sec 322s Start 56: demo_mesh-quality_serial 322s 26/49 Test #56: demo_mesh-quality_serial .................. Passed 0.30 sec 322s Start 58: demo_ale_serial 322s 27/49 Test #50: demo_sym-dirichlet-bc_serial .............. Passed 1.20 sec 322s Start 60: demo_eval_serial 322s 28/49 Test #58: demo_ale_serial ........................... Passed 0.31 sec 322s Start 62: demo_dg-advection-diffusion_serial 322s 29/49 Test #60: demo_eval_serial .......................... Passed 0.43 sec 322s Start 64: demo_dg-poisson_serial 323s 30/49 Test #62: demo_dg-advection-diffusion_serial ........ Passed 0.50 sec 323s Start 66: demo_time-series_serial 323s 31/49 Test #64: demo_dg-poisson_serial .................... Passed 0.30 sec 323s Start 68: demo_spatial-coordinates_serial 323s 32/49 Test #66: demo_time-series_serial ................... Passed 0.32 sec 323s Start 70: demo_multimesh-stokes_serial 323s 33/49 Test #68: demo_spatial-coordinates_serial ........... Passed 0.32 sec 323s Start 72: demo_meshfunction-refinement_serial 323s 34/49 Test #72: demo_meshfunction-refinement_serial ....... Passed 0.28 sec 323s Start 74: demo_contact-vi-snes_serial 323s 35/49 Test #70: demo_multimesh-stokes_serial .............. Passed 0.42 sec 323s Start 76: demo_lift-drag_serial 324s 36/49 Test #32: demo_elastodynamics_serial ................ Passed 9.53 sec 324s Start 78: demo_multimesh-poisson_serial 324s 37/49 Test #76: demo_lift-drag_serial ..................... Passed 0.30 sec 324s Start 80: demo_advection-diffusion_serial 324s 38/49 Test #74: demo_contact-vi-snes_serial ............... Passed 0.46 sec 324s Start 82: demo_gmg-poisson_serial 324s 39/49 Test #82: demo_gmg-poisson_serial ................... Passed 0.33 sec 324s Start 84: demo_waveguide_serial 324s 40/49 Test #80: demo_advection-diffusion_serial ........... Passed 0.66 sec 324s Start 86: demo_poisson1D_serial 325s 41/49 Test #84: demo_waveguide_serial ..................... Passed 0.41 sec 325s Start 88: demo_auto-adaptive-navier-stokes_serial 325s 42/49 Test #86: demo_poisson1D_serial ..................... Passed 0.29 sec 325s Start 90: demo_nonmatching-projection_serial 325s 43/49 Test #78: demo_multimesh-poisson_serial ............. Passed 1.39 sec 325s Start 92: demo_refinement_serial 325s 44/49 Test #90: demo_nonmatching-projection_serial ........ Passed 0.42 sec 325s Start 94: demo_poisson-disc_serial 325s 45/49 Test #92: demo_refinement_serial .................... Passed 0.31 sec 325s Start 96: demo_poisson1D-in-2D_serial 326s 46/49 Test #94: demo_poisson-disc_serial .................. Passed 0.37 sec 326s 47/49 Test #96: demo_poisson1D-in-2D_serial ............... Passed 0.29 sec 329s 48/49 Test #22: demo_stokes-iterative_serial .............. Passed 16.27 sec 331s 49/49 Test #88: demo_auto-adaptive-navier-stokes_serial ... Passed 6.43 sec 331s 331s 100% tests passed, 0 tests failed out of 49 331s 331s Total Test time (real) = 19.93 sec 331s running C++ demos (MPI) 331s available CPUs: NPROC=4, of which we use N_CPU=4 331s using 3 processes per demo (i.e. run 2 demo[s] at once) 331s Test project /tmp/autopkgtest.8KRSRk/build.52a/src/dolfin-demo 331s Start 1: demo_nonmatching-interpolation_mpi 331s Start 3: demo_eigenvalue_mpi 331s 1/47 Test #1: demo_nonmatching-interpolation_mpi ..... Passed 0.37 sec 331s Start 5: demo_nonlinear-poisson_mpi 331s 2/47 Test #3: demo_eigenvalue_mpi .................... Passed 0.44 sec 331s Start 7: demo_biharmonic_mpi 332s 3/47 Test #5: demo_nonlinear-poisson_mpi ............. Passed 0.43 sec 332s Start 9: demo_auto-adaptive-poisson_mpi 332s 4/47 Test #7: demo_biharmonic_mpi .................... Passed 0.41 sec 332s Start 11: demo_subdomains_mpi 332s 5/47 Test #9: demo_auto-adaptive-poisson_mpi ......... Passed 0.36 sec 332s Start 15: demo_bcs_mpi 332s 6/47 Test #11: demo_subdomains_mpi .................... Passed 0.36 sec 332s Start 17: demo_neumann-poisson_mpi 334s 7/47 Test #17: demo_neumann-poisson_mpi ............... Passed 1.26 sec 334s Start 19: demo_navier-stokes_mpi 334s 8/47 Test #15: demo_bcs_mpi ........................... Passed 1.45 sec 334s Start 21: demo_stokes-iterative_mpi 355s 9/47 Test #21: demo_stokes-iterative_mpi .............. Passed 20.95 sec 355s Start 23: demo_poisson_mpi 356s 10/47 Test #23: demo_poisson_mpi ....................... Passed 1.74 sec 356s Start 25: demo_singular-poisson_mpi 360s 11/47 Test #25: demo_singular-poisson_mpi .............. Passed 3.78 sec 360s Start 27: demo_built-in-meshes_mpi 360s 12/47 Test #19: demo_navier-stokes_mpi ................. Passed 26.86 sec 360s Start 29: demo_periodic_mpi 361s 13/47 Test #27: demo_built-in-meshes_mpi ............... Passed 0.46 sec 361s Start 31: demo_elastodynamics_mpi 361s 14/47 Test #29: demo_periodic_mpi ...................... Passed 0.39 sec 361s Start 33: demo_functional_mpi 361s 15/47 Test #33: demo_functional_mpi .................... Passed 0.48 sec 361s Start 35: demo_elasticity_mpi 368s 16/47 Test #35: demo_elasticity_mpi .................... Passed 6.87 sec 368s Start 37: demo_parameters_mpi 369s 17/47 Test #37: demo_parameters_mpi .................... Passed 0.39 sec 369s Start 39: demo_contact-vi-tao_mpi 371s 18/47 Test #39: demo_contact-vi-tao_mpi ................ Passed 2.93 sec 371s Start 41: demo_extrapolation_mpi 372s 19/47 Test #41: demo_extrapolation_mpi ................. Passed 0.38 sec 372s Start 43: demo_parallel-refinement_mpi 373s 20/47 Test #43: demo_parallel-refinement_mpi ........... Passed 0.92 sec 373s Start 45: demo_conditional_mpi 375s 21/47 Test #45: demo_conditional_mpi ................... Passed 2.03 sec 375s Start 47: demo_curl-curl_mpi 386s 22/47 Test #47: demo_curl-curl_mpi ..................... Passed 10.77 sec 386s Start 49: demo_sym-dirichlet-bc_mpi 391s 23/47 Test #49: demo_sym-dirichlet-bc_mpi .............. Passed 5.36 sec 391s Start 51: demo_block-matrix_mpi 392s 24/47 Test #51: demo_block-matrix_mpi .................. Passed 0.89 sec 392s Start 53: demo_submesh_mpi 392s 25/47 Test #53: demo_submesh_mpi ....................... Passed 0.38 sec 392s Start 55: demo_mesh-quality_mpi 393s 26/47 Test #55: demo_mesh-quality_mpi .................. Passed 1.18 sec 393s Start 57: demo_ale_mpi 396s 27/47 Test #57: demo_ale_mpi ........................... Passed 2.42 sec 396s Start 59: demo_eval_mpi 396s 28/47 Test #59: demo_eval_mpi .......................... Passed 0.38 sec 396s Start 61: demo_dg-advection-diffusion_mpi 399s 29/47 Test #61: demo_dg-advection-diffusion_mpi ........ Passed 2.50 sec 399s Start 63: demo_dg-poisson_mpi 400s 30/47 Test #63: demo_dg-poisson_mpi .................... Passed 1.33 sec 400s Start 65: demo_time-series_mpi 400s 31/47 Test #65: demo_time-series_mpi ................... Passed 0.42 sec 400s Start 67: demo_spatial-coordinates_mpi 403s 32/47 Test #67: demo_spatial-coordinates_mpi ........... Passed 2.26 sec 403s Start 69: demo_multimesh-stokes_mpi 403s 33/47 Test #69: demo_multimesh-stokes_mpi .............. Passed 0.40 sec 403s Start 71: demo_meshfunction-refinement_mpi 404s 34/47 Test #71: demo_meshfunction-refinement_mpi ....... Passed 0.40 sec 404s Start 73: demo_contact-vi-snes_mpi 408s 35/47 Test #73: demo_contact-vi-snes_mpi ............... Passed 4.47 sec 408s Start 75: demo_lift-drag_mpi 409s 36/47 Test #75: demo_lift-drag_mpi ..................... Passed 0.69 sec 409s Start 77: demo_multimesh-poisson_mpi 409s 37/47 Test #77: demo_multimesh-poisson_mpi ............. Passed 0.39 sec 409s Start 79: demo_advection-diffusion_mpi 420s 38/47 Test #79: demo_advection-diffusion_mpi ........... Passed 10.88 sec 420s Start 81: demo_gmg-poisson_mpi 422s 39/47 Test #81: demo_gmg-poisson_mpi ................... Passed 1.86 sec 422s Start 83: demo_waveguide_mpi 423s 40/47 Test #83: demo_waveguide_mpi ..................... Passed 0.98 sec 423s Start 85: demo_poisson1D_mpi 423s 41/47 Test #85: demo_poisson1D_mpi ..................... Passed 0.44 sec 423s Start 87: demo_auto-adaptive-navier-stokes_mpi 424s 42/47 Test #87: demo_auto-adaptive-navier-stokes_mpi ... Passed 0.38 sec 424s Start 89: demo_nonmatching-projection_mpi 424s 43/47 Test #89: demo_nonmatching-projection_mpi ........ Passed 0.39 sec 424s Start 91: demo_refinement_mpi 426s 44/47 Test #91: demo_refinement_mpi .................... Passed 2.12 sec 426s Start 93: demo_poisson-disc_mpi 426s 45/47 Test #93: demo_poisson-disc_mpi .................. Passed 0.39 sec 426s Start 95: demo_poisson1D-in-2D_mpi 427s 46/47 Test #95: demo_poisson1D-in-2D_mpi ............... Passed 0.39 sec 443s 47/47 Test #31: demo_elastodynamics_mpi ................ Passed 82.35 sec 443s 443s 100% tests passed, 0 tests failed out of 47 443s 443s Total Test time (real) = 111.89 sec 443s autopkgtest [20:55:59]: test test-dolfin-cpp: -----------------------] 444s test-dolfin-cpp PASS 444s autopkgtest [20:56:00]: test test-dolfin-cpp: - - - - - - - - - - results - - - - - - - - - - 444s autopkgtest [20:56:00]: test test-dolfin-python-unittest: preparing testbed 445s Reading package lists... 446s Building dependency tree... 446s Reading state information... 446s Starting pkgProblemResolver with broken count: 0 446s Starting 2 pkgProblemResolver with broken count: 0 446s Done 446s The following additional packages will be installed: 446s blt fonts-lyx liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0 libtcl8.6 446s libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxslt1.1 libxss1 446s python-matplotlib-data python3-appdirs python3-brotli python3-contourpy 446s python3-cycler python3-dateutil python3-decorator python3-fonttools 446s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 446s python3-matplotlib python3-pil python3-pil.imagetk python3-pluggy 446s python3-pytest python3-scipy python3-tk python3-tz python3-ufolib2 446s python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data 446s Suggested packages: 446s blt-demo liblcms2-utils tcl8.6 tk8.6 python-cycler-doc python-lxml-doc 446s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 446s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 446s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 446s texlive-extra-utils texlive-latex-extra python-pil-doc python-scipy-doc tix 446s python3-tk-dbg 446s Recommended packages: 446s python3-bs4 python3-cssselect python3-html5lib python3-olefile 446s The following NEW packages will be installed: 446s autopkgtest-satdep blt fonts-lyx liblbfgsb0 liblcms2-2 libopenjp2-7 446s libqhull-r8.0 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 446s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-brotli 446s python3-contourpy python3-cycler python3-dateutil python3-decorator 446s python3-fonttools python3-fs python3-iniconfig python3-kiwisolver 446s python3-lxml python3-lz4 python3-matplotlib python3-pil python3-pil.imagetk 446s python3-pluggy python3-pytest python3-scipy python3-tk python3-tz 446s python3-ufolib2 python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data 446s 0 upgraded, 40 newly installed, 0 to remove and 69 not upgraded. 446s Need to get 47.5 MB/47.5 MB of archives. 446s After this operation, 226 MB of additional disk space will be used. 446s Get:1 /tmp/autopkgtest.8KRSRk/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [1216 B] 446s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 447s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 447s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 447s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 447s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 447s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 447s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 447s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 447s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 447s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 447s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 447s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 447s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 447s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 447s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 447s Get:17 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 447s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2build1 [271 kB] 447s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 447s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 447s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 447s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 447s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 447s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-lxml amd64 5.3.0-1build1 [1834 kB] 447s Get:25 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build5 [27.5 kB] 447s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-scipy amd64 1.13.1-5ubuntu1 [21.7 MB] 448s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 448s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 448s Get:29 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-fonttools amd64 4.54.1-4ubuntu1 [1757 kB] 448s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 448s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 448s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 448s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-pil amd64 10.4.0-1ubuntu2 [580 kB] 448s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 448s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 448s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 448s Get:37 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu2 [9568 B] 448s Get:38 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu1 [4691 kB] 448s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 448s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 448s Fetched 47.5 MB in 2s (24.2 MB/s) 449s Selecting previously unselected package libtcl8.6:amd64. 449s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 124620 files and directories currently installed.) 449s Preparing to unpack .../00-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 449s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 449s Selecting previously unselected package libxft2:amd64. 449s Preparing to unpack .../01-libxft2_2.3.6-1build1_amd64.deb ... 449s Unpacking libxft2:amd64 (2.3.6-1build1) ... 449s Selecting previously unselected package libxss1:amd64. 449s Preparing to unpack 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previously unselected package liblcms2-2:amd64. 449s Preparing to unpack .../08-liblcms2-2_2.16-2_amd64.deb ... 449s Unpacking liblcms2-2:amd64 (2.16-2) ... 449s Selecting previously unselected package libqhull-r8.0:amd64. 449s Preparing to unpack .../09-libqhull-r8.0_2020.2-6build1_amd64.deb ... 449s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 449s Selecting previously unselected package libwebpdemux2:amd64. 449s Preparing to unpack .../10-libwebpdemux2_1.4.0-0.1_amd64.deb ... 449s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 449s Selecting previously unselected package libwebpmux3:amd64. 449s Preparing to unpack .../11-libwebpmux3_1.4.0-0.1_amd64.deb ... 449s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 449s Selecting previously unselected package libxslt1.1:amd64. 449s Preparing to unpack .../12-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 449s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 449s Selecting previously unselected package python-matplotlib-data. 449s 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449s Unpacking python3-dateutil (2.9.0-3) ... 449s Selecting previously unselected package python3-decorator. 449s Preparing to unpack .../19-python3-decorator_5.1.1-5_all.deb ... 449s Unpacking python3-decorator (5.1.1-5) ... 449s Selecting previously unselected package python3-tz. 449s Preparing to unpack .../20-python3-tz_2024.1-2_all.deb ... 449s Unpacking python3-tz (2024.1-2) ... 449s Selecting previously unselected package python3-fs. 449s Preparing to unpack .../21-python3-fs_2.4.16-4_all.deb ... 449s Unpacking python3-fs (2.4.16-4) ... 449s Selecting previously unselected package python3-lxml:amd64. 449s Preparing to unpack .../22-python3-lxml_5.3.0-1build1_amd64.deb ... 449s Unpacking python3-lxml:amd64 (5.3.0-1build1) ... 449s Selecting previously unselected package python3-lz4. 449s Preparing to unpack .../23-python3-lz4_4.0.2+dfsg-1build5_amd64.deb ... 449s Unpacking python3-lz4 (4.0.2+dfsg-1build5) ... 449s Selecting previously unselected package python3-scipy. 449s 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unselected package python3-pil.imagetk:amd64. 450s Preparing to unpack .../35-python3-pil.imagetk_10.4.0-1ubuntu2_amd64.deb ... 450s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu2) ... 450s Selecting previously unselected package python3-matplotlib. 450s Preparing to unpack .../36-python3-matplotlib_3.8.3-3ubuntu1_amd64.deb ... 450s Unpacking python3-matplotlib (3.8.3-3ubuntu1) ... 451s Selecting previously unselected package python3-pluggy. 451s Preparing to unpack .../37-python3-pluggy_1.5.0-1_all.deb ... 451s Unpacking python3-pluggy (1.5.0-1) ... 451s Selecting previously unselected package python3-pytest. 451s Preparing to unpack .../38-python3-pytest_8.3.3-1_all.deb ... 451s Unpacking python3-pytest (8.3.3-1) ... 451s Selecting previously unselected package autopkgtest-satdep. 451s Preparing to unpack .../39-2-autopkgtest-satdep.deb ... 451s Unpacking autopkgtest-satdep (0) ... 451s Setting up liblcms2-2:amd64 (2.16-2) ... 451s Setting up python3-iniconfig (1.1.1-2) ... 451s Setting up libxft2:amd64 (2.3.6-1build1) ... 451s Setting up python3-lz4 (4.0.2+dfsg-1build5) ... 451s Setting up fonts-lyx (2.4.2.1-1) ... 451s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 451s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 451s Setting up python3-tz (2024.1-2) ... 451s Setting up unicode-data (15.1.0-1) ... 451s Setting up python3-decorator (5.1.1-5) ... 451s Setting up python3-brotli (1.1.0-2build3) ... 451s Setting up python3-cycler (0.12.1-1) ... 451s Setting up python3-kiwisolver (1.4.7-2build1) ... 452s Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... 452s Setting up python3-pluggy (1.5.0-1) ... 452s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 452s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 452s Setting up python3-dateutil (2.9.0-3) ... 452s Setting up python3-contourpy (1.3.0-2build1) ... 452s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 452s Setting up python-matplotlib-data (3.8.3-3ubuntu1) ... 452s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 452s Setting up python3-appdirs (1.4.4-4) ... 452s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 452s Setting up python3-scipy (1.13.1-5ubuntu1) ... 457s Setting up python3-pytest (8.3.3-1) ... 458s Setting up libtk8.6:amd64 (8.6.15-1) ... 458s Setting up python3.12-tk (3.12.7-3) ... 458s Setting up python3.13-tk (3.13.0-2) ... 458s Setting up python3-fs (2.4.16-4) ... 458s Setting up python3-pil:amd64 (10.4.0-1ubuntu2) ... 459s Setting up python3-lxml:amd64 (5.3.0-1build1) ... 459s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 459s Setting up blt (2.5.3+dfsg-7build1) ... 459s Setting up python3-tk:amd64 (3.12.7-1) ... 459s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu2) ... 459s Setting up python3-fonttools (4.54.1-4ubuntu1) ... 460s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 460s Setting up python3-matplotlib (3.8.3-3ubuntu1) ... 463s Setting up autopkgtest-satdep (0) ... 463s Processing triggers for libc-bin (2.40-1ubuntu3) ... 463s Processing triggers for man-db (2.13.0-1) ... 463s Processing triggers for fontconfig (2.15.0-1.1ubuntu2) ... 466s (Reading database ... 128574 files and directories currently installed.) 466s Removing autopkgtest-satdep (0) ... 467s autopkgtest [20:56:23]: test test-dolfin-python-unittest: [----------------------- 467s === python 3.13 unit test (serial) === 468s ImportError while loading conftest '/tmp/autopkgtest.8KRSRk/build.52a/src/python/test/unit/conftest.py'. 468s ERROR: could not import mpi4py! 468s python/test/unit/conftest.py:3: in 468s from dolfin import MPI 468s /usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py:170: in 468s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 468s /usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py:34: in 468s from dolfin.fem.form import Form 468s /usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py:12: in 468s from dolfin.jit.jit import dolfin_pc, ffc_jit 468s /usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py:125: in 468s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 468s E RuntimeError: Error when importing mpi4py 469s autopkgtest [20:56:25]: test test-dolfin-python-unittest: -----------------------] 469s test-dolfin-python-unittest FAIL non-zero exit status 4 469s autopkgtest [20:56:25]: test test-dolfin-python-unittest: - - - - - - - - - - results - - - - - - - - - - 469s autopkgtest [20:56:25]: test test-dolfin-python-unittest: - - - - - - - - - - stderr - - - - - - - - - - 469s ImportError while loading conftest '/tmp/autopkgtest.8KRSRk/build.52a/src/python/test/unit/conftest.py'. 469s python/test/unit/conftest.py:3: in 469s from dolfin import MPI 469s /usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py:170: in 469s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 469s /usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py:34: in 469s from dolfin.fem.form import Form 469s /usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py:12: in 469s from dolfin.jit.jit import dolfin_pc, ffc_jit 469s /usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py:125: in 469s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 469s E RuntimeError: Error when importing mpi4py 470s autopkgtest [20:56:26]: test test-dolfin-python-demo: preparing testbed 471s Reading package lists... 471s Building dependency tree... 471s Reading state information... 471s Starting pkgProblemResolver with broken count: 0 471s Starting 2 pkgProblemResolver with broken count: 0 471s Done 471s The following NEW packages will be installed: 471s autopkgtest-satdep 471s 0 upgraded, 1 newly installed, 0 to remove and 69 not upgraded. 471s Need to get 0 B/1220 B of archives. 471s After this operation, 0 B of additional disk space will be used. 471s Get:1 /tmp/autopkgtest.8KRSRk/3-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [1220 B] 472s Selecting previously unselected package autopkgtest-satdep. 472s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 128574 files and directories currently installed.) 472s Preparing to unpack .../3-autopkgtest-satdep.deb ... 472s Unpacking autopkgtest-satdep (0) ... 472s Setting up autopkgtest-satdep (0) ... 475s (Reading database ... 128574 files and directories currently installed.) 475s Removing autopkgtest-satdep (0) ... 476s autopkgtest [20:56:32]: test test-dolfin-python-demo: [----------------------- 476s skipping demos with SKIP_DEMOS=not ( cahn or hyperelasticity or elastodynamics or navier or elasticity ) 476s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonmatching-interpolation/demo_nonmatching-interpolation.py 476s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/eigenvalue/demo_eigenvalue.py 476s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonlinear-poisson/demo_nonlinear-poisson.py 476s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/biharmonic/demo_biharmonic.py 476s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/elastodynamics/demo_elastodynamics.py 476s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/auto-adaptive-poisson/demo_auto-adaptive-poisson.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/mixed-poisson/demo_mixed-poisson.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/cahn-hilliard/demo_cahn-hilliard.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/hyperelasticity/demo_hyperelasticity.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/maxwell-eigenvalues/demo_maxwell-eigenvalues.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/neumann-poisson/demo_neumann-poisson.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-iterative/demo_stokes-iterative.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/poisson/demo_poisson.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/singular-poisson/demo_singular-poisson.py 477s extract written to /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/built-in-meshes/demo_built-in-meshes.py 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonmatching-interpolation ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/eigenvalue ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonlinear-poisson ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/biharmonic ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/elastodynamics ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/auto-adaptive-poisson ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/mixed-poisson ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/cahn-hilliard ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/hyperelasticity ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/maxwell-eigenvalues ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/neumann-poisson ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-iterative ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/poisson ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/singular-poisson ... 477s Converting rst files in in /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/built-in-meshes ... 477s === python 3.13 demo test (serial) === 477s ============================= test session starts ============================== 477s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 477s cachedir: .pytest_cache 477s rootdir: /tmp/autopkgtest.8KRSRk/build.52a/src/python 477s plugins: typeguard-4.4.1 477s collecting ... collected 82 items / 6 deselected / 76 selected 477s 478s python/demo/test.py::test_demos[path0-demo_nonmatching-interpolation.py] FAILED [ 1%] 479s python/demo/test.py::test_demos[path1-demo_eigenvalue.py] FAILED [ 2%] 480s python/demo/test.py::test_demos[path2-demo_nonlinear-poisson.py] FAILED [ 3%] 482s python/demo/test.py::test_demos[path3-demo_biharmonic.py] FAILED [ 5%] 483s python/demo/test.py::test_demos[path5-demo_auto-adaptive-poisson.py] FAILED [ 6%] 484s python/demo/test.py::test_demos[path6-demo_subdomains.py] FAILED [ 7%] 485s python/demo/test.py::test_demos[path7-demo_mixed-poisson.py] FAILED [ 9%] 486s python/demo/test.py::test_demos[path10-demo_stokes-taylor-hood.py] FAILED [ 10%] 487s python/demo/test.py::test_demos[path11-demo_maxwell-eigenvalues.py] FAILED [ 11%] 488s python/demo/test.py::test_demos[path12-demo_stokes-mini.py] FAILED [ 13%] 489s python/demo/test.py::test_demos[path13-demo_neumann-poisson.py] FAILED [ 14%] 489s python/demo/test.py::test_demos[path15-demo_stokes-iterative.py] FAILED [ 15%] 490s python/demo/test.py::test_demos[path16-demo_poisson.py] FAILED [ 17%] 491s python/demo/test.py::test_demos[path17-demo_singular-poisson.py] FAILED [ 18%] 492s python/demo/test.py::test_demos[path18-demo_built-in-meshes.py] FAILED [ 19%] 493s python/demo/test.py::test_demos[path19-demo_subdomains-poisson.py] FAILED [ 21%] 494s python/demo/test.py::test_demos[path20-demo_periodic.py] FAILED [ 22%] 495s python/demo/test.py::test_demos[path21-demo_buckling-tao.py] FAILED [ 23%] 496s python/demo/test.py::test_demos[path22-demo_functional.py] FAILED [ 25%] 496s python/demo/test.py::test_demos[path24-demo_parameters.py] FAILED [ 26%] 497s python/demo/test.py::test_demos[path25-demo_multistage-solver.py] FAILED [ 27%] 498s python/demo/test.py::test_demos[path26-demo_contact-vi-tao.py] FAILED [ 28%] 499s python/demo/test.py::test_demos[path27-demo_extrapolation.py] FAILED [ 30%] 500s python/demo/test.py::test_demos[path28-demo_parallel-refinement.py] FAILED [ 31%] 500s python/demo/test.py::test_demos[path29-demo_conditional.py] FAILED [ 32%] 501s python/demo/test.py::test_demos[path30-demo_mixedfunctionspace.py] FAILED [ 34%] 502s python/demo/test.py::test_demos[path31-demo_curl-curl.py] FAILED [ 35%] 503s python/demo/test.py::test_demos[path32-demo_sym-dirichlet-bc.py] FAILED [ 36%] 504s python/demo/test.py::test_demos[path33-demo_block-assembly-3D2D.py] FAILED [ 38%] 505s python/demo/test.py::test_demos[path34-demo_projection-interpolation.py] FAILED [ 39%] 506s python/demo/test.py::test_demos[path35-demo_block-matrix.py] FAILED [ 40%] 506s python/demo/test.py::test_demos[path36-demo_submesh.py] FAILED [ 42%] 507s python/demo/test.py::test_demos[path37-demo_mesh-quality.py] FAILED [ 43%] 508s python/demo/test.py::test_demos[path38-demo_ale.py] FAILED [ 44%] 509s python/demo/test.py::test_demos[path39-demo_eval.py] FAILED [ 46%] 510s python/demo/test.py::test_demos[path40-demo_point-integral.py] FAILED [ 47%] 511s python/demo/test.py::test_demos[path41-demo_dg-advection-diffusion.py] FAILED [ 48%] 511s python/demo/test.py::test_demos[path42-demo_sub-function-assignment.py] FAILED [ 50%] 512s python/demo/test.py::test_demos[path43-demo_dg-poisson.py] FAILED [ 51%] 513s python/demo/test.py::test_demos[path44-demo_multimesh-quadrature.py] FAILED [ 52%] 514s python/demo/test.py::test_demos[path45-demo_optimization.py] FAILED [ 53%] 515s python/demo/test.py::test_demos[path46-demo_formsplitter.py] FAILED [ 55%] 516s python/demo/test.py::test_demos[path47-demo_time-series.py] FAILED [ 56%] 516s python/demo/test.py::test_demos[path48-demo_ghost-mesh.py] FAILED [ 57%] 517s python/demo/test.py::test_demos[path49-demo_matnest.py] FAILED [ 59%] 518s python/demo/test.py::test_demos[path50-demo_spatial-coordinates.py] FAILED [ 60%] 519s python/demo/test.py::test_demos[path51-demo_overlapping-regions.py] FAILED [ 61%] 520s python/demo/test.py::test_demos[path52-demo_multimesh-stokes.py] FAILED [ 63%] 521s python/demo/test.py::test_demos[path53-demo_collision-detection.py] FAILED [ 64%] 521s python/demo/test.py::test_demos[path54-demo_mplot.py] FAILED [ 65%] 522s python/demo/test.py::test_demos[path55-demo_contact-vi-snes.py] FAILED [ 67%] 523s python/demo/test.py::test_demos[path56-demo_smoothing.py] FAILED [ 68%] 524s python/demo/test.py::test_demos[path57-demo_lift-drag.py] FAILED [ 69%] 525s python/demo/test.py::test_demos[path58-demo_meshview-3D2D.py] FAILED [ 71%] 525s python/demo/test.py::test_demos[path59-demo_block-assembly-3D1D.py] FAILED [ 72%] 526s python/demo/test.py::test_demos[path60-demo_timing.py] FAILED [ 73%] 527s python/demo/test.py::test_demos[path61-demo_meshview-2D2D.py] FAILED [ 75%] 528s python/demo/test.py::test_demos[path62-demo_multimesh-poisson.py] FAILED [ 76%] 529s python/demo/test.py::test_demos[path63-demo_advection-diffusion.py] FAILED [ 77%] 529s python/demo/test.py::test_demos[path64-demo_special-functions.py] FAILED [ 78%] 530s python/demo/test.py::test_demos[path65-demo_waveguide.py] FAILED [ 80%] 531s python/demo/test.py::test_demos[path66-demo_adaptive-poisson.py] FAILED [ 81%] 532s python/demo/test.py::test_demos[path67-demo_poisson1D.py] FAILED [ 82%] 533s python/demo/test.py::test_demos[path68-demo_elementplot.py] FAILED [ 84%] 534s python/demo/test.py::test_demos[path69-demo_meshview-3D1D.py] FAILED [ 85%] 534s python/demo/test.py::test_demos[path70-demo_multimesh_marking.py] FAILED [ 86%] 535s python/demo/test.py::test_demos[path71-demo_meshview-3D3D.py] FAILED [ 88%] 536s python/demo/test.py::test_demos[path72-demo_mixed-poisson-sphere.py] FAILED [ 89%] 537s python/demo/test.py::test_demos[path73-demo_block-assembly-2D2D-nonlinear.py] FAILED [ 90%] 538s python/demo/test.py::test_demos[path74-demo_block-assembly-2D2D.py] FAILED [ 92%] 538s python/demo/test.py::test_demos[path75-demo_coordinates.py] FAILED [ 93%] 539s python/demo/test.py::test_demos[path77-demo_interpolation.py] FAILED [ 94%] 540s python/demo/test.py::test_demos[path78-demo_nonmatching-projection.py] FAILED [ 96%] 541s python/demo/test.py::test_demos[path79-demo_refinement.py] FAILED [ 97%] 542s python/demo/test.py::test_demos[path80-demo_poisson-disc.py] FAILED [ 98%] 543s python/demo/test.py::test_demos[path81-demo_poisson1D-in-2D.py] FAILED [100%] 543s 543s =================================== FAILURES =================================== 543s _____________ test_demos[path0-demo_nonmatching-interpolation.py] ______________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonmatching-interpolation') 543s name = 'demo_nonmatching-interpolation.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_nonmatching-interpolation.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonmatching-interpolation', 'env': {'ADTTMP': '/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_nonmatching-interpolation.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonmatching-interpolation/demo_nonmatching-interpolation.py", line 18, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path1-demo_eigenvalue.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/eigenvalue') 543s name = 'demo_eigenvalue.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_eigenvalue.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/eigenvalue', 'env': {'ADTTMP': '/tmp/autopkgtest...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_eigenvalue.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/eigenvalue/demo_eigenvalue.py", line 26, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path2-demo_nonlinear-poisson.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonlinear-poisson') 543s name = 'demo_nonlinear-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_nonlinear-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonlinear-poisson', 'env': {'ADTTMP': '/tmp/auto...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_nonlinear-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/nonlinear-poisson/demo_nonlinear-poisson.py", line 106, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path3-demo_biharmonic.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/biharmonic') 543s name = 'demo_biharmonic.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_biharmonic.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/biharmonic', 'env': {'ADTTMP': '/tmp/autopkgtest...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_biharmonic.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/biharmonic/demo_biharmonic.py", line 103, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _______________ test_demos[path5-demo_auto-adaptive-poisson.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/auto-adaptive-poisson') 543s name = 'demo_auto-adaptive-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_auto-adaptive-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/auto-adaptive-poisson', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_auto-adaptive-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/auto-adaptive-poisson/demo_auto-adaptive-poisson.py", line 157, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path6-demo_subdomains.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains') 543s name = 'demo_subdomains.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_subdomains.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains', 'env': {'ADTTMP': '/tmp/autopkgtest...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_subdomains.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains/demo_subdomains.py", line 32, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path7-demo_mixed-poisson.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/mixed-poisson') 543s name = 'demo_mixed-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_mixed-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/mixed-poisson', 'env': {'ADTTMP': '/tmp/autopkgt...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mixed-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/mixed-poisson/demo_mixed-poisson.py", line 119, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path10-demo_stokes-taylor-hood.py] _________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-taylor-hood') 543s name = 'demo_stokes-taylor-hood.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_stokes-taylor-hood.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-taylor-hood', 'env': {'ADTTMP': '/tmp/aut...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_stokes-taylor-hood.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-taylor-hood/demo_stokes-taylor-hood.py", line 32, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path11-demo_maxwell-eigenvalues.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/maxwell-eigenvalues') 543s name = 'demo_maxwell-eigenvalues.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_maxwell-eigenvalues.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/maxwell-eigenvalues', 'env': {'ADTTMP': '/tmp/au...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_maxwell-eigenvalues.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/maxwell-eigenvalues/demo_maxwell-eigenvalues.py", line 129, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path12-demo_stokes-mini.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-mini') 543s name = 'demo_stokes-mini.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_stokes-mini.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-mini', 'env': {'ADTTMP': '/tmp/autopkgtes...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_stokes-mini.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-mini/demo_stokes-mini.py", line 28, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s __________________ test_demos[path13-demo_neumann-poisson.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/neumann-poisson') 543s name = 'demo_neumann-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_neumann-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/neumann-poisson', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_neumann-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/neumann-poisson/demo_neumann-poisson.py", line 122, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path15-demo_stokes-iterative.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-iterative') 543s name = 'demo_stokes-iterative.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_stokes-iterative.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-iterative', 'env': {'ADTTMP': '/tmp/autop...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_stokes-iterative.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/stokes-iterative/demo_stokes-iterative.py", line 97, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ______________________ test_demos[path16-demo_poisson.py] ______________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/poisson') 543s name = 'demo_poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/poisson', 'env': {'ADTTMP': '/tmp/autopkgtest.8K...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/poisson/demo_poisson.py", line 79, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path17-demo_singular-poisson.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/singular-poisson') 543s name = 'demo_singular-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_singular-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/singular-poisson', 'env': {'ADTTMP': '/tmp/autop...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_singular-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/singular-poisson/demo_singular-poisson.py", line 99, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s __________________ test_demos[path18-demo_built-in-meshes.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/built-in-meshes') 543s name = 'demo_built-in-meshes.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_built-in-meshes.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/built-in-meshes', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_built-in-meshes.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/built-in-meshes/demo_built-in-meshes.py", line 31, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path19-demo_subdomains-poisson.py] _________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains-poisson') 543s name = 'demo_subdomains-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_subdomains-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains-poisson', 'env': {'ADTTMP': '/tmp/aut...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_subdomains-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains-poisson/demo_subdomains-poisson.py:108: SyntaxWarning: invalid escape sequence '\i' 543s print("\int grad(u) * n ds(2) = ", v1) 543s /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains-poisson/demo_subdomains-poisson.py:113: SyntaxWarning: invalid escape sequence '\i' 543s print("\int u dx(1) = ", v2) 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/subdomains-poisson/demo_subdomains-poisson.py", line 24, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path20-demo_periodic.py] ______________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/periodic') 543s name = 'demo_periodic.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_periodic.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/periodic', 'env': {'ADTTMP': '/tmp/autopkgtest.8...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_periodic.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/documented/periodic/demo_periodic.py", line 34, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path21-demo_buckling-tao.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/buckling-tao') 543s name = 'demo_buckling-tao.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_buckling-tao.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/buckling-tao', 'env': {'ADTTMP': '/tmp/autopkg...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_buckling-tao.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/buckling-tao/demo_buckling-tao.py", line 29, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path22-demo_functional.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/functional') 543s name = 'demo_functional.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_functional.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/functional', 'env': {'ADTTMP': '/tmp/autopkgte...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_functional.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/functional/demo_functional.py", line 34, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path24-demo_parameters.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/parameters') 543s name = 'demo_parameters.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_parameters.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/parameters', 'env': {'ADTTMP': '/tmp/autopkgte...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_parameters.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/parameters/demo_parameters.py", line 29, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path25-demo_multistage-solver.py] _________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multistage-solver') 543s name = 'demo_multistage-solver.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_multistage-solver.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multistage-solver', 'env': {'ADTTMP': '/tmp/au...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multistage-solver.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multistage-solver/demo_multistage-solver.py", line 38, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s __________________ test_demos[path26-demo_contact-vi-tao.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/contact-vi-tao') 543s name = 'demo_contact-vi-tao.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_contact-vi-tao.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/contact-vi-tao', 'env': {'ADTTMP': '/tmp/autop...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_contact-vi-tao.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/contact-vi-tao/demo_contact-vi-tao.py", line 29, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path27-demo_extrapolation.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/extrapolation') 543s name = 'demo_extrapolation.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_extrapolation.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/extrapolation', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_extrapolation.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/extrapolation/demo_extrapolation.py", line 21, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path28-demo_parallel-refinement.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/parallel-refinement') 543s name = 'demo_parallel-refinement.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_parallel-refinement.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/parallel-refinement', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_parallel-refinement.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/parallel-refinement/demo_parallel-refinement.py", line 21, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path29-demo_conditional.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/conditional') 543s name = 'demo_conditional.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_conditional.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/conditional', 'env': {'ADTTMP': '/tmp/autopkgt...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_conditional.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/conditional/demo_conditional.py", line 37, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path30-demo_mixedfunctionspace.py] _________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mixedfunctionspace') 543s name = 'demo_mixedfunctionspace.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_mixedfunctionspace.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mixedfunctionspace', 'env': {'ADTTMP': '/tmp/a...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mixedfunctionspace.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mixedfunctionspace/demo_mixedfunctionspace.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path31-demo_curl-curl.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/curl-curl') 543s name = 'demo_curl-curl.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_curl-curl.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/curl-curl', 'env': {'ADTTMP': '/tmp/autopkgtes...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_curl-curl.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s /tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/curl-curl/demo_curl-curl.py:1: SyntaxWarning: invalid escape sequence '\p' 543s """Eddy currents phenomena in low conducting body can be described 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/curl-curl/demo_curl-curl.py", line 44, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path32-demo_sym-dirichlet-bc.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/sym-dirichlet-bc') 543s name = 'demo_sym-dirichlet-bc.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_sym-dirichlet-bc.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/sym-dirichlet-bc', 'env': {'ADTTMP': '/tmp/aut...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_sym-dirichlet-bc.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/sym-dirichlet-bc/demo_sym-dirichlet-bc.py", line 27, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path33-demo_block-assembly-3D2D.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-3D2D') 543s name = 'demo_block-assembly-3D2D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-3D2D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-3D2D', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-3D2D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-3D2D/demo_block-assembly-3D2D.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________ test_demos[path34-demo_projection-interpolation.py] ______________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/projection-interpolation') 543s name = 'demo_projection-interpolation.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_projection-interpolation.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/projection-interpolation', 'env': {'ADTTMP': '...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_projection-interpolation.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/projection-interpolation/demo_projection-interpolation.py", line 24, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path35-demo_block-matrix.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-matrix') 543s name = 'demo_block-matrix.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_block-matrix.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-matrix', 'env': {'ADTTMP': '/tmp/autopkg...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-matrix.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-matrix/demo_block-matrix.py", line 26, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ______________________ test_demos[path36-demo_submesh.py] ______________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/submesh') 543s name = 'demo_submesh.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_submesh.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/submesh', 'env': {'ADTTMP': '/tmp/autopkgtest....y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_submesh.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/submesh/demo_submesh.py", line 25, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path37-demo_mesh-quality.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mesh-quality') 543s name = 'demo_mesh-quality.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_mesh-quality.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mesh-quality', 'env': {'ADTTMP': '/tmp/autopkg...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mesh-quality.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mesh-quality/demo_mesh-quality.py", line 24, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________________ test_demos[path38-demo_ale.py] ________________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/ale') 543s name = 'demo_ale.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_ale.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/ale', 'env': {'ADTTMP': '/tmp/autopkgtest.8KRS...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_ale.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/ale/demo_ale.py", line 26, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _______________________ test_demos[path39-demo_eval.py] ________________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/eval') 543s name = 'demo_eval.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_eval.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/eval', 'env': {'ADTTMP': '/tmp/autopkgtest.8KR...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_eval.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/eval/demo_eval.py", line 23, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s __________________ test_demos[path40-demo_point-integral.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/point-integral') 543s name = 'demo_point-integral.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_point-integral.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/point-integral', 'env': {'ADTTMP': '/tmp/autop...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_point-integral.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/point-integral/demo_point-integral.py", line 37, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ______________ test_demos[path41-demo_dg-advection-diffusion.py] _______________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/dg-advection-diffusion') 543s name = 'demo_dg-advection-diffusion.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_dg-advection-diffusion.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/dg-advection-diffusion', 'env': {'ADTTMP': '/t...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_dg-advection-diffusion.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/dg-advection-diffusion/demo_dg-advection-diffusion.py", line 27, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ______________ test_demos[path42-demo_sub-function-assignment.py] ______________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/sub-function-assignment') 543s name = 'demo_sub-function-assignment.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_sub-function-assignment.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/sub-function-assignment', 'env': {'ADTTMP': '/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_sub-function-assignment.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/sub-function-assignment/demo_sub-function-assignment.py", line 23, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path43-demo_dg-poisson.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/dg-poisson') 543s name = 'demo_dg-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_dg-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/dg-poisson', 'env': {'ADTTMP': '/tmp/autopkgte...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_dg-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/dg-poisson/demo_dg-poisson.py", line 39, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _______________ test_demos[path44-demo_multimesh-quadrature.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-quadrature') 543s name = 'demo_multimesh-quadrature.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_multimesh-quadrature.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-quadrature', 'env': {'ADTTMP': '/tmp...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh-quadrature.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-quadrature/demo_multimesh-quadrature.py", line 31, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path45-demo_optimization.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/optimization') 543s name = 'demo_optimization.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_optimization.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/optimization', 'env': {'ADTTMP': '/tmp/autopkg...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_optimization.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/optimization/demo_optimization.py", line 22, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path46-demo_formsplitter.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/formsplitter') 543s name = 'demo_formsplitter.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_formsplitter.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/formsplitter', 'env': {'ADTTMP': '/tmp/autopkg...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_formsplitter.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/formsplitter/demo_formsplitter.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path47-demo_time-series.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/time-series') 543s name = 'demo_time-series.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_time-series.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/time-series', 'env': {'ADTTMP': '/tmp/autopkgt...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_time-series.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/time-series/demo_time-series.py", line 21, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path48-demo_ghost-mesh.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/ghost-mesh') 543s name = 'demo_ghost-mesh.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_ghost-mesh.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/ghost-mesh', 'env': {'ADTTMP': '/tmp/autopkgte...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_ghost-mesh.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/ghost-mesh/demo_ghost-mesh.py", line 5, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ______________________ test_demos[path49-demo_matnest.py] ______________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/matnest') 543s name = 'demo_matnest.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_matnest.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/matnest', 'env': {'ADTTMP': '/tmp/autopkgtest....y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_matnest.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/matnest/demo_matnest.py", line 18, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path50-demo_spatial-coordinates.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/spatial-coordinates') 543s name = 'demo_spatial-coordinates.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_spatial-coordinates.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/spatial-coordinates', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_spatial-coordinates.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/spatial-coordinates/demo_spatial-coordinates.py", line 41, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path51-demo_overlapping-regions.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/overlapping-regions') 543s name = 'demo_overlapping-regions.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_overlapping-regions.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/overlapping-regions', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_overlapping-regions.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/overlapping-regions/demo_overlapping-regions.py", line 26, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path52-demo_multimesh-stokes.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-stokes') 543s name = 'demo_multimesh-stokes.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_multimesh-stokes.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-stokes', 'env': {'ADTTMP': '/tmp/aut...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh-stokes.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-stokes/demo_multimesh-stokes.py", line 24, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path53-demo_collision-detection.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/collision-detection') 543s name = 'demo_collision-detection.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_collision-detection.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/collision-detection', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_collision-detection.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/collision-detection/demo_collision-detection.py", line 18, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _______________________ test_demos[path54-demo_mplot.py] _______________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mplot') 543s name = 'demo_mplot.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_mplot.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mplot', 'env': {'ADTTMP': '/tmp/autopkgtest.8K...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mplot.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mplot/demo_mplot.py", line 20, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s __________________ test_demos[path55-demo_contact-vi-snes.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/contact-vi-snes') 543s name = 'demo_contact-vi-snes.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_contact-vi-snes.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/contact-vi-snes', 'env': {'ADTTMP': '/tmp/auto...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_contact-vi-snes.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/contact-vi-snes/demo_contact-vi-snes.py", line 25, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path56-demo_smoothing.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/smoothing') 543s name = 'demo_smoothing.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_smoothing.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/smoothing', 'env': {'ADTTMP': '/tmp/autopkgtes...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_smoothing.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/smoothing/demo_smoothing.py", line 23, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path57-demo_lift-drag.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/lift-drag') 543s name = 'demo_lift-drag.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_lift-drag.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/lift-drag', 'env': {'ADTTMP': '/tmp/autopkgtes...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_lift-drag.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/lift-drag/demo_lift-drag.py", line 36, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path58-demo_meshview-3D2D.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D2D') 543s name = 'demo_meshview-3D2D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_meshview-3D2D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D2D', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-3D2D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D2D/demo_meshview-3D2D.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path59-demo_block-assembly-3D1D.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-3D1D') 543s name = 'demo_block-assembly-3D1D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-3D1D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-3D1D', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-3D1D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-3D1D/demo_block-assembly-3D1D.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ______________________ test_demos[path60-demo_timing.py] _______________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/timing') 543s name = 'demo_timing.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_timing.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/timing', 'env': {'ADTTMP': '/tmp/autopkgtest.8...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_timing.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/timing/demo_timing.py", line 18, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path61-demo_meshview-2D2D.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-2D2D') 543s name = 'demo_meshview-2D2D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_meshview-2D2D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-2D2D', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-2D2D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-2D2D/demo_meshview-2D2D.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path62-demo_multimesh-poisson.py] _________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-poisson') 543s name = 'demo_multimesh-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_multimesh-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-poisson', 'env': {'ADTTMP': '/tmp/au...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-poisson/demo_multimesh-poisson.py", line 26, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path63-demo_advection-diffusion.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/advection-diffusion') 543s name = 'demo_advection-diffusion.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_advection-diffusion.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/advection-diffusion', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_advection-diffusion.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/advection-diffusion/demo_advection-diffusion.py", line 28, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path64-demo_special-functions.py] _________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/special-functions') 543s name = 'demo_special-functions.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_special-functions.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/special-functions', 'env': {'ADTTMP': '/tmp/au...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_special-functions.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/special-functions/demo_special-functions.py", line 25, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path65-demo_waveguide.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/waveguide') 543s name = 'demo_waveguide.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_waveguide.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/waveguide', 'env': {'ADTTMP': '/tmp/autopkgtes...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_waveguide.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/waveguide/demo_waveguide.py", line 37, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path66-demo_adaptive-poisson.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/adaptive-poisson') 543s name = 'demo_adaptive-poisson.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_adaptive-poisson.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/adaptive-poisson', 'env': {'ADTTMP': '/tmp/aut...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_adaptive-poisson.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/adaptive-poisson/demo_adaptive-poisson.py", line 35, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _____________________ test_demos[path67-demo_poisson1D.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson1D') 543s name = 'demo_poisson1D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_poisson1D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson1D', 'env': {'ADTTMP': '/tmp/autopkgtes...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson1D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson1D/demo_poisson1D.py", line 37, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path68-demo_elementplot.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/elementplot') 543s name = 'demo_elementplot.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_elementplot.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/elementplot', 'env': {'ADTTMP': '/tmp/autopkgt...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_elementplot.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/elementplot/demo_elementplot.py", line 23, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path69-demo_meshview-3D1D.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D1D') 543s name = 'demo_meshview-3D1D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_meshview-3D1D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D1D', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-3D1D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D1D/demo_meshview-3D1D.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _________________ test_demos[path70-demo_multimesh_marking.py] _________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-marking') 543s name = 'demo_multimesh_marking.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_multimesh_marking.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-marking', 'env': {'ADTTMP': '/tmp/au...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_multimesh_marking.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/multimesh-marking/demo_multimesh_marking.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path71-demo_meshview-3D3D.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D3D') 543s name = 'demo_meshview-3D3D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_meshview-3D3D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D3D', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_meshview-3D3D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/meshview-3D3D/demo_meshview-3D3D.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s _______________ test_demos[path72-demo_mixed-poisson-sphere.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mixed-poisson-sphere') 543s name = 'demo_mixed-poisson-sphere.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_mixed-poisson-sphere.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mixed-poisson-sphere', 'env': {'ADTTMP': '/tmp...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_mixed-poisson-sphere.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/mixed-poisson-sphere/demo_mixed-poisson-sphere.py", line 28, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________ test_demos[path73-demo_block-assembly-2D2D-nonlinear.py] ___________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-2D2D') 543s name = 'demo_block-assembly-2D2D-nonlinear.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-2D2D-nonlinear.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-2D2D', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-2D2D-nonlinear.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-2D2D/demo_block-assembly-2D2D-nonlinear.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ________________ test_demos[path74-demo_block-assembly-2D2D.py] ________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-2D2D') 543s name = 'demo_block-assembly-2D2D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_block-assembly-2D2D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-2D2D', 'env': {'ADTTMP': '/tmp/...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_block-assembly-2D2D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/block-assembly-2D2D/demo_block-assembly-2D2D.py", line 1, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path75-demo_coordinates.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/coordinates') 543s name = 'demo_coordinates.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_coordinates.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/coordinates', 'env': {'ADTTMP': '/tmp/autopkgt...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_coordinates.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/coordinates/demo_coordinates.py", line 21, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path77-demo_interpolation.py] ___________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/interpolation') 543s name = 'demo_interpolation.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_interpolation.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/interpolation', 'env': {'ADTTMP': '/tmp/autopk...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_interpolation.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/interpolation/demo_interpolation.py", line 28, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ______________ test_demos[path78-demo_nonmatching-projection.py] _______________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/nonmatching-projection') 543s name = 'demo_nonmatching-projection.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_nonmatching-projection.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/nonmatching-projection', 'env': {'ADTTMP': '/t...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_nonmatching-projection.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/nonmatching-projection/demo_nonmatching-projection.py", line 26, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ____________________ test_demos[path79-demo_refinement.py] _____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/refinement') 543s name = 'demo_refinement.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_refinement.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/refinement', 'env': {'ADTTMP': '/tmp/autopkgte...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_refinement.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/refinement/demo_refinement.py", line 24, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ___________________ test_demos[path80-demo_poisson-disc.py] ____________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson-disc') 543s name = 'demo_poisson-disc.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_poisson-disc.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson-disc', 'env': {'ADTTMP': '/tmp/autopkg...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson-disc.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson-disc/demo_poisson-disc.py", line 36, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s __________________ test_demos[path81-demo_poisson1D-in-2D.py] __________________ 543s 543s mpiexec = None, num_proc = 1 543s path = PosixPath('/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson1D-in-2D') 543s name = 'demo_poisson1D-in-2D.py' 543s 543s @pytest.mark.parametrize("path,name", demos) 543s def test_demos(mpiexec, num_proc, path, name): 543s 543s if mpiexec is None: 543s # Run in serial 543s > ret = subprocess.run([sys.executable, name], 543s cwd=str(path), 543s env={**os.environ, 'MPLBACKEND': 'agg'}, 543s check=True) 543s 543s python/demo/test.py:35: 543s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 543s 543s input = None, capture_output = False, timeout = None, check = True 543s popenargs = (['/usr/bin/python3.13', 'demo_poisson1D-in-2D.py'],) 543s kwargs = {'cwd': '/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson1D-in-2D', 'env': {'ADTTMP': '/tmp/auto...y/4.0.0-9 openmpi/5.0.5-6', 'AUTOPKGTEST_ARTIFACTS': '/tmp/autopkgtest.8KRSRk/test-dolfin-python-demo-artifacts', ...}} 543s process = 543s stdout = None, stderr = None, retcode = 1 543s 543s def run(*popenargs, 543s input=None, capture_output=False, timeout=None, check=False, **kwargs): 543s """Run command with arguments and return a CompletedProcess instance. 543s 543s The returned instance will have attributes args, returncode, stdout and 543s stderr. By default, stdout and stderr are not captured, and those attributes 543s will be None. Pass stdout=PIPE and/or stderr=PIPE in order to capture them, 543s or pass capture_output=True to capture both. 543s 543s If check is True and the exit code was non-zero, it raises a 543s CalledProcessError. The CalledProcessError object will have the return code 543s in the returncode attribute, and output & stderr attributes if those streams 543s were captured. 543s 543s If timeout is given, and the process takes too long, a TimeoutExpired 543s exception will be raised. 543s 543s There is an optional argument "input", allowing you to 543s pass bytes or a string to the subprocess's stdin. If you use this argument 543s you may not also use the Popen constructor's "stdin" argument, as 543s it will be used internally. 543s 543s By default, all communication is in bytes, and therefore any "input" should 543s be bytes, and the stdout and stderr will be bytes. If in text mode, any 543s "input" should be a string, and stdout and stderr will be strings decoded 543s according to locale encoding, or by "encoding" if set. Text mode is 543s triggered by setting any of text, encoding, errors or universal_newlines. 543s 543s The other arguments are the same as for the Popen constructor. 543s """ 543s if input is not None: 543s if kwargs.get('stdin') is not None: 543s raise ValueError('stdin and input arguments may not both be used.') 543s kwargs['stdin'] = PIPE 543s 543s if capture_output: 543s if kwargs.get('stdout') is not None or kwargs.get('stderr') is not None: 543s raise ValueError('stdout and stderr arguments may not be used ' 543s 'with capture_output.') 543s kwargs['stdout'] = PIPE 543s kwargs['stderr'] = PIPE 543s 543s with Popen(*popenargs, **kwargs) as process: 543s try: 543s stdout, stderr = process.communicate(input, timeout=timeout) 543s except TimeoutExpired as exc: 543s process.kill() 543s if _mswindows: 543s # Windows accumulates the output in a single blocking 543s # read() call run on child threads, with the timeout 543s # being done in a join() on those threads. communicate() 543s # _after_ kill() is required to collect that and add it 543s # to the exception. 543s exc.stdout, exc.stderr = process.communicate() 543s else: 543s # POSIX _communicate already populated the output so 543s # far into the TimeoutExpired exception. 543s process.wait() 543s raise 543s except: # Including KeyboardInterrupt, communicate handled that. 543s process.kill() 543s # We don't call process.wait() as .__exit__ does that for us. 543s raise 543s retcode = process.poll() 543s if check and retcode: 543s > raise CalledProcessError(retcode, process.args, 543s output=stdout, stderr=stderr) 543s E subprocess.CalledProcessError: Command '['/usr/bin/python3.13', 'demo_poisson1D-in-2D.py']' returned non-zero exit status 1. 543s 543s /usr/lib/python3.13/subprocess.py:577: CalledProcessError 543s ----------------------------- Captured stdout call ----------------------------- 543s ERROR: could not import mpi4py! 543s ----------------------------- Captured stderr call ----------------------------- 543s ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 543s 543s The above exception was the direct cause of the following exception: 543s 543s Traceback (most recent call last): 543s File "/tmp/autopkgtest.8KRSRk/build.52a/src/python/demo/undocumented/poisson1D-in-2D/demo_poisson1D-in-2D.py", line 39, in 543s from dolfin import * 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 543s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 543s SystemAssembler, assemble_local) 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 543s from dolfin.fem.form import Form 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 543s from dolfin.jit.jit import dolfin_pc, ffc_jit 543s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 543s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 543s ^^^^^^^^^^^^^^ 543s RuntimeError: Error when importing mpi4py 543s ============================= slowest 20 durations ============================= 543s 1.30s call demo/test.py::test_demos[path1-demo_eigenvalue.py] 543s 1.23s call demo/test.py::test_demos[path2-demo_nonlinear-poisson.py] 543s 1.17s call demo/test.py::test_demos[path3-demo_biharmonic.py] 543s 1.17s call demo/test.py::test_demos[path10-demo_stokes-taylor-hood.py] 543s 1.15s call demo/test.py::test_demos[path5-demo_auto-adaptive-poisson.py] 543s 1.14s call demo/test.py::test_demos[path12-demo_stokes-mini.py] 543s 1.13s call demo/test.py::test_demos[path20-demo_periodic.py] 543s 0.84s call demo/test.py::test_demos[path17-demo_singular-poisson.py] 543s 0.84s call demo/test.py::test_demos[path6-demo_subdomains.py] 543s 0.84s call demo/test.py::test_demos[path44-demo_multimesh-quadrature.py] 543s 0.83s call demo/test.py::test_demos[path31-demo_curl-curl.py] 543s 0.83s call demo/test.py::test_demos[path43-demo_dg-poisson.py] 543s 0.83s call demo/test.py::test_demos[path16-demo_poisson.py] 543s 0.83s call demo/test.py::test_demos[path7-demo_mixed-poisson.py] 543s 0.82s call demo/test.py::test_demos[path38-demo_ale.py] 543s 0.82s call demo/test.py::test_demos[path0-demo_nonmatching-interpolation.py] 543s 0.82s call demo/test.py::test_demos[path39-demo_eval.py] 543s 0.82s call demo/test.py::test_demos[path11-demo_maxwell-eigenvalues.py] 543s 0.82s call demo/test.py::test_demos[path46-demo_formsplitter.py] 543s 0.82s call demo/test.py::test_demos[path19-demo_subdomains-poisson.py] 543s =========================== short test summary info ============================ 543s FAILED python/demo/test.py::test_demos[path0-demo_nonmatching-interpolation.py] 543s FAILED python/demo/test.py::test_demos[path1-demo_eigenvalue.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path2-demo_nonlinear-poisson.py] - sub... 543s FAILED python/demo/test.py::test_demos[path3-demo_biharmonic.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path5-demo_auto-adaptive-poisson.py] 543s FAILED python/demo/test.py::test_demos[path6-demo_subdomains.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path7-demo_mixed-poisson.py] - subproc... 543s FAILED python/demo/test.py::test_demos[path10-demo_stokes-taylor-hood.py] - s... 543s FAILED python/demo/test.py::test_demos[path11-demo_maxwell-eigenvalues.py] - ... 543s FAILED python/demo/test.py::test_demos[path12-demo_stokes-mini.py] - subproce... 543s FAILED python/demo/test.py::test_demos[path13-demo_neumann-poisson.py] - subp... 543s FAILED python/demo/test.py::test_demos[path15-demo_stokes-iterative.py] - sub... 543s FAILED python/demo/test.py::test_demos[path16-demo_poisson.py] - subprocess.C... 543s FAILED python/demo/test.py::test_demos[path17-demo_singular-poisson.py] - sub... 543s FAILED python/demo/test.py::test_demos[path18-demo_built-in-meshes.py] - subp... 543s FAILED python/demo/test.py::test_demos[path19-demo_subdomains-poisson.py] - s... 543s FAILED python/demo/test.py::test_demos[path20-demo_periodic.py] - subprocess.... 543s FAILED python/demo/test.py::test_demos[path21-demo_buckling-tao.py] - subproc... 543s FAILED python/demo/test.py::test_demos[path22-demo_functional.py] - subproces... 543s FAILED python/demo/test.py::test_demos[path24-demo_parameters.py] - subproces... 543s FAILED python/demo/test.py::test_demos[path25-demo_multistage-solver.py] - su... 543s FAILED python/demo/test.py::test_demos[path26-demo_contact-vi-tao.py] - subpr... 543s FAILED python/demo/test.py::test_demos[path27-demo_extrapolation.py] - subpro... 543s FAILED python/demo/test.py::test_demos[path28-demo_parallel-refinement.py] - ... 543s FAILED python/demo/test.py::test_demos[path29-demo_conditional.py] - subproce... 543s FAILED python/demo/test.py::test_demos[path30-demo_mixedfunctionspace.py] - s... 543s FAILED python/demo/test.py::test_demos[path31-demo_curl-curl.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path32-demo_sym-dirichlet-bc.py] - sub... 543s FAILED python/demo/test.py::test_demos[path33-demo_block-assembly-3D2D.py] - ... 543s FAILED python/demo/test.py::test_demos[path34-demo_projection-interpolation.py] 543s FAILED python/demo/test.py::test_demos[path35-demo_block-matrix.py] - subproc... 543s FAILED python/demo/test.py::test_demos[path36-demo_submesh.py] - subprocess.C... 543s FAILED python/demo/test.py::test_demos[path37-demo_mesh-quality.py] - subproc... 543s FAILED python/demo/test.py::test_demos[path38-demo_ale.py] - subprocess.Calle... 543s FAILED python/demo/test.py::test_demos[path39-demo_eval.py] - subprocess.Call... 543s FAILED python/demo/test.py::test_demos[path40-demo_point-integral.py] - subpr... 543s FAILED python/demo/test.py::test_demos[path41-demo_dg-advection-diffusion.py] 543s FAILED python/demo/test.py::test_demos[path42-demo_sub-function-assignment.py] 543s FAILED python/demo/test.py::test_demos[path43-demo_dg-poisson.py] - subproces... 543s FAILED python/demo/test.py::test_demos[path44-demo_multimesh-quadrature.py] 543s FAILED python/demo/test.py::test_demos[path45-demo_optimization.py] - subproc... 543s FAILED python/demo/test.py::test_demos[path46-demo_formsplitter.py] - subproc... 543s FAILED python/demo/test.py::test_demos[path47-demo_time-series.py] - subproce... 543s FAILED python/demo/test.py::test_demos[path48-demo_ghost-mesh.py] - subproces... 543s FAILED python/demo/test.py::test_demos[path49-demo_matnest.py] - subprocess.C... 543s FAILED python/demo/test.py::test_demos[path50-demo_spatial-coordinates.py] - ... 543s FAILED python/demo/test.py::test_demos[path51-demo_overlapping-regions.py] - ... 543s FAILED python/demo/test.py::test_demos[path52-demo_multimesh-stokes.py] - sub... 543s FAILED python/demo/test.py::test_demos[path53-demo_collision-detection.py] - ... 543s FAILED python/demo/test.py::test_demos[path54-demo_mplot.py] - subprocess.Cal... 543s FAILED python/demo/test.py::test_demos[path55-demo_contact-vi-snes.py] - subp... 543s FAILED python/demo/test.py::test_demos[path56-demo_smoothing.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path57-demo_lift-drag.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path58-demo_meshview-3D2D.py] - subpro... 543s FAILED python/demo/test.py::test_demos[path59-demo_block-assembly-3D1D.py] - ... 543s FAILED python/demo/test.py::test_demos[path60-demo_timing.py] - subprocess.Ca... 543s FAILED python/demo/test.py::test_demos[path61-demo_meshview-2D2D.py] - subpro... 543s FAILED python/demo/test.py::test_demos[path62-demo_multimesh-poisson.py] - su... 543s FAILED python/demo/test.py::test_demos[path63-demo_advection-diffusion.py] - ... 543s FAILED python/demo/test.py::test_demos[path64-demo_special-functions.py] - su... 543s FAILED python/demo/test.py::test_demos[path65-demo_waveguide.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path66-demo_adaptive-poisson.py] - sub... 543s FAILED python/demo/test.py::test_demos[path67-demo_poisson1D.py] - subprocess... 543s FAILED python/demo/test.py::test_demos[path68-demo_elementplot.py] - subproce... 543s FAILED python/demo/test.py::test_demos[path69-demo_meshview-3D1D.py] - subpro... 543s FAILED python/demo/test.py::test_demos[path70-demo_multimesh_marking.py] - su... 543s FAILED python/demo/test.py::test_demos[path71-demo_meshview-3D3D.py] - subpro... 543s FAILED python/demo/test.py::test_demos[path72-demo_mixed-poisson-sphere.py] 543s FAILED python/demo/test.py::test_demos[path73-demo_block-assembly-2D2D-nonlinear.py] 543s FAILED python/demo/test.py::test_demos[path74-demo_block-assembly-2D2D.py] - ... 543s FAILED python/demo/test.py::test_demos[path75-demo_coordinates.py] - subproce... 543s FAILED python/demo/test.py::test_demos[path77-demo_interpolation.py] - subpro... 543s FAILED python/demo/test.py::test_demos[path78-demo_nonmatching-projection.py] 543s FAILED python/demo/test.py::test_demos[path79-demo_refinement.py] - subproces... 543s FAILED python/demo/test.py::test_demos[path80-demo_poisson-disc.py] - subproc... 543s FAILED python/demo/test.py::test_demos[path81-demo_poisson1D-in-2D.py] - subp... 543s ================= 76 failed, 6 deselected in 65.59s (0:01:05) ================== 543s autopkgtest [20:57:39]: test test-dolfin-python-demo: -----------------------] 544s autopkgtest [20:57:40]: test test-dolfin-python-demo: - - - - - - - - - - results - - - - - - - - - - 544s test-dolfin-python-demo FAIL non-zero exit status 1 544s autopkgtest [20:57:40]: test test-dolfin-python-pusimp: preparing testbed 597s autopkgtest [20:58:33]: testbed dpkg architecture: amd64 597s autopkgtest [20:58:33]: testbed apt version: 2.9.8 597s autopkgtest [20:58:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 598s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 598s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 598s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 598s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1005 kB] 598s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [90.7 kB] 598s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [109 kB] 598s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [172 kB] 598s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 598s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [819 kB] 598s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [301 kB] 598s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 598s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 598s Fetched 2636 kB in 1s (3129 kB/s) 598s Reading package lists... 600s Reading package lists... 600s Building dependency tree... 600s Reading state information... 601s Calculating upgrade... 601s The following NEW packages will be installed: 601s python3.13-gdbm 601s The following packages will be upgraded: 601s debianutils libftdi1-2 libnvme1t64 python3-gdbm 601s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 601s Need to get 252 kB of archives. 601s After this operation, 104 kB of additional disk space will be used. 601s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 debianutils amd64 5.21 [92.9 kB] 601s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 601s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 601s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-7build1 [30.2 kB] 601s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11-2 [88.7 kB] 601s Fetched 252 kB in 0s (624 kB/s) 602s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 602s Preparing to unpack .../debianutils_5.21_amd64.deb ... 602s Unpacking debianutils (5.21) over (5.20) ... 602s Setting up debianutils (5.21) ... 602s Selecting previously unselected package python3.13-gdbm. 602s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 602s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 602s Unpacking python3.13-gdbm (3.13.0-2) ... 602s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 602s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 602s Preparing to unpack .../libftdi1-2_1.5-7build1_amd64.deb ... 602s Unpacking libftdi1-2:amd64 (1.5-7build1) over (1.5-7) ... 602s Preparing to unpack .../libnvme1t64_1.11-2_amd64.deb ... 602s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 602s Setting up libftdi1-2:amd64 (1.5-7build1) ... 602s Setting up libnvme1t64 (1.11-2) ... 602s Setting up python3.13-gdbm (3.13.0-2) ... 602s Setting up python3-gdbm:amd64 (3.12.7-1) ... 602s Processing triggers for man-db (2.13.0-1) ... 603s Processing triggers for libc-bin (2.40-1ubuntu3) ... 603s Reading package lists... 603s Building dependency tree... 603s Reading state information... 603s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 604s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 604s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 604s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 604s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 605s Reading package lists... 605s Reading package lists... 605s Building dependency tree... 605s Reading state information... 605s Calculating upgrade... 605s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 605s Reading package lists... 605s Building dependency tree... 605s Reading state information... 605s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 609s Reading package lists... 609s Building dependency tree... 609s Reading state information... 609s Starting pkgProblemResolver with broken count: 2 609s Starting 2 pkgProblemResolver with broken count: 2 609s Investigating (0) libpetsc-real3.20-dev:amd64 < none -> 3.20.6+dfsg1-3ubuntu3 @un puN Ib > 609s Broken libpetsc-real3.20-dev:amd64 Depends on libpetsc3.20-dev-common:amd64 < none | 3.20.6+dfsg1-3ubuntu3 @un uH > (= 3.20.6+dfsg1-3ubuntu3) 609s Considering libpetsc3.20-dev-common:amd64 0 as a solution to libpetsc-real3.20-dev:amd64 6 609s Re-Instated libptscotch-dev:amd64 609s Re-Instated libscalapack-openmpi-dev:amd64 609s Re-Instated libscalapack-mpi-dev:amd64 609s Re-Instated libfftw3-quad3:amd64 609s Re-Instated libfftw3-bin:amd64 609s Re-Instated libfftw3-dev:amd64 609s Re-Instated libfftw3-mpi-dev:amd64 609s Re-Instated opencl-c-headers:amd64 609s Re-Instated opencl-clhpp-headers:amd64 609s Re-Instated ocl-icd-opencl-dev:amd64 609s Re-Instated libsuperlu7:amd64 609s Re-Instated libsuperlu-dev:amd64 609s Re-Instated libsuperlu-dist-dev:amd64 609s Re-Instated xorg-sgml-doctools:amd64 609s Re-Instated x11proto-dev:amd64 609s Re-Instated libxau-dev:amd64 609s Re-Instated libxdmcp-dev:amd64 609s Re-Instated xtrans-dev:amd64 609s Re-Instated libxcb1-dev:amd64 609s Re-Instated libx11-dev:amd64 609s Re-Instated libyaml-dev:amd64 609s Re-Instated libpetsc3.20-dev-common:amd64 609s Broken libpetsc-real3.20-dev:amd64 Depends on libopenmpi-dev:amd64 < none -> 5.0.5-6 @un puN > (< 4.2) 609s Considering libopenmpi-dev:amd64 13 as a solution to libpetsc-real3.20-dev:amd64 6 609s Re-Instated libopenmpi-dev:amd64 609s Broken libpetsc-real3.20-dev:amd64 Depends on libhypre-dev:amd64 < none | 2.31.0-1exp2 @un uH > (>= 2.15.1) 609s Considering libhypre-dev:amd64 0 as a solution to libpetsc-real3.20-dev:amd64 6 609s Re-Instated libhypre-dev:amd64 609s Broken libpetsc-real3.20-dev:amd64 Depends on libmumps-dev:amd64 < none | 5.6.2-2.1build3 @un uH > 609s Considering libmumps-dev:amd64 1 as a solution to libpetsc-real3.20-dev:amd64 6 609s Re-Instated libmumps-headers-dev:amd64 609s Re-Instated libmumps-dev:amd64 609s Broken libpetsc-real3.20-dev:amd64 Depends on libtrilinos-ml-dev:amd64 < none | 13.2.0-6 @un uH > 609s Considering libtrilinos-ml-dev:amd64 1 as a solution to libpetsc-real3.20-dev:amd64 6 609s Re-Instated trilinos-dev:amd64 609s Re-Instated libtrilinos-aztecoo-dev:amd64 609s Re-Instated libtrilinos-trilinosss-dev:amd64 609s Re-Instated libtrilinos-ml-dev:amd64 609s Broken libpetsc-real3.20-dev:amd64 Depends on libtrilinos-zoltan-dev:amd64 < none | 13.2.0-6 @un uH > 609s Considering libtrilinos-zoltan-dev:amd64 2 as a solution to libpetsc-real3.20-dev:amd64 6 609s Re-Instated libtrilinos-zoltan-dev:amd64 609s Broken libpetsc-real3.20-dev:amd64 Depends on valgrind-mpi:amd64 < none | 1:3.23.0-0ubuntu2 @un uH > 609s Considering valgrind-mpi:amd64 2 as a solution to libpetsc-real3.20-dev:amd64 6 609s Re-Instated libc6-dbg:amd64 609s Re-Instated valgrind:amd64 609s Re-Instated valgrind-mpi:amd64 609s Investigating (0) libpetsc64-real3.20-dev:amd64 < none -> 3.20.6+dfsg1-3ubuntu3 @un puN Ib > 609s Broken libpetsc64-real3.20-dev:amd64 Depends on libopenmpi-dev:amd64 < none -> 5.0.5-6 @un puN > (< 4.2) 609s Considering libopenmpi-dev:amd64 6 as a solution to libpetsc64-real3.20-dev:amd64 4 609s Broken libpetsc64-real3.20-dev:amd64 Depends on libhypre64m-dev:amd64 < none | 2.31.0-1exp2 @un uH > (>= 2.21.0) 609s Considering libhypre64m-dev:amd64 0 as a solution to libpetsc64-real3.20-dev:amd64 4 609s Re-Instated libopenblas64-0-pthread:amd64 609s Re-Instated libopenblas64-0:amd64 609s Re-Instated libopenblas64-pthread-dev:amd64 609s Re-Instated libopenblas64-dev:amd64 609s Re-Instated libhypre64m-dev:amd64 609s Broken libpetsc64-real3.20-dev:amd64 Depends on libmumps64-dev:amd64 < none | 5.6.2-2.1build3 @un uH > 609s Considering libmumps64-dev:amd64 1 as a solution to libpetsc64-real3.20-dev:amd64 4 609s Re-Instated libmumps64-dev:amd64 609s Done 609s Some packages could not be installed. This may mean that you have 609s requested an impossible situation or if you are using the unstable 609s distribution that some required packages have not yet been created 609s or been moved out of Incoming. 609s The following information may help to resolve the situation: 609s 609s The following packages have unmet dependencies: 610s libpetsc-real3.20-dev : Depends: libopenmpi-dev (< 4.2) but 5.0.5-6 is to be installed 610s libpetsc64-real3.20-dev : Depends: libopenmpi-dev (< 4.2) but 5.0.5-6 is to be installed 610s E: Unable to correct problems, you have held broken packages. 610s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 610s Reading package lists... 610s Building dependency tree... 610s Reading state information... 610s Starting pkgProblemResolver with broken count: 0 610s Starting 2 pkgProblemResolver with broken count: 0 610s Done 611s The following additional packages will be installed: 611s autoconf automake autopoint autotools-dev build-essential chrpath cmake 611s cmake-data cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu curl 611s debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism 611s docutils-common dolfin-bin dolfin-doc doxygen dwz fontconfig 611s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 611s fonts-lato fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu 611s g++-x86-64-linux-gnu gcc gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu 611s gettext gfortran gfortran-14 gfortran-14-x86-64-linux-gnu 611s gfortran-x86-64-linux-gnu graphviz icu-devtools intltool-debian libaec-dev 611s libaec0 libamd-comgr2 libamd3 libamdhip64-5 libann0 libaom3 611s libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 libblas-dev 611s libblas3 libblas64-3 libboost-atomic1.83-dev libboost-atomic1.83.0 611s libboost-chrono-dev libboost-chrono1.83-dev libboost-chrono1.83.0t64 611s libboost-date-time1.83-dev libboost-date-time1.83.0 libboost-dev 611s libboost-filesystem-dev libboost-filesystem1.83-dev 611s libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev 611s libboost-iostreams1.83.0 libboost-math-dev libboost-math1.83-dev 611s libboost-math1.83.0 libboost-mpi-dev libboost-mpi1.83-dev libboost-mpi1.83.0 611s libboost-program-options-dev libboost-program-options1.83-dev 611s libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 611s libboost-serialization-dev libboost-serialization1.83-dev 611s libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 611s libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 611s libboost-timer-dev libboost-timer1.83-dev libboost-timer1.83.0 611s libboost1.83-dev libbrotli-dev libbrotli1 libbtf2 libc6-dbg libcairo2 611s libcamd3 libcc1-0 libccolamd3 libcdt5 libcgraph6 libcholmod5 libcolamd3 611s libcombblas2.0.0t64 libcurl3t64-gnutls libcurl4-openssl-dev libcurl4t64 611s libcxsparse4 libdatrie1 libde265-0 libdebhelper-perl libdeflate0 611s libdolfin-dev libdolfin-dev-common libdolfin2019.2t64 libdolfin64-2019.2t64 611s libdolfin64-dev libdrm-amdgpu1 libeigen3-dev libevent-2.1-7t64 libevent-dev 611s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 611s libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 611s libfftw3-long3 libfftw3-mpi-dev libfftw3-mpi3 libfftw3-quad3 611s libfftw3-single3 libfile-stripnondeterminism-perl libfmt10 libfontconfig1 611s libgcc-14-dev libgd3 libgfortran-14-dev libgfortran5 libgmp-dev 611s libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev 611s libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b 611s libhdf5-mpi-dev libhdf5-openmpi-103-1t64 libhdf5-openmpi-cpp-103-1t64 611s libhdf5-openmpi-dev libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 611s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 611s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 611s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 611s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 611s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 611s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 611s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 611s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26 611s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 611s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 libmetis5 libmpc3 611s libmumps-5.7 libmumps-64pord-5.7 libmumps-dev libmumps-headers-dev 611s libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev libnl-route-3-dev 611s libnuma-dev libopenblas64-0 libopenblas64-0-pthread libopenblas64-dev 611s libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 libp11-kit-dev 611s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparpack2-dev 611s libparpack2t64 libparu1 libpathplan4 libpciaccess0 libpetsc-real-dev 611s libpetsc-real3.21 libpetsc-real3.21-dev libpetsc3.21-dev-common 611s libpetsc64-real-dev libpetsc64-real3.21 libpetsc64-real3.21-dev 611s libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 libpsl-dev 611s libpsm-infinipath1 libpsm2-2 libptscotch-7.0 libptscotch-dev 611s libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev 611s libpython3.13 libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib 611s libquadmath0 libraqm0 librbio4 librdmacm1t64 librhash1 librtmp-dev 611s libscalapack-mpi-dev libscalapack-openmpi-dev libscalapack-openmpi2.2 611s libscotch-7.0 libscotch-dev libsharpyuv0 libslepc-real3.21 611s libslepc-real3.21-dev libslepc64-real3.21 libslepc64-real3.21-dev libsm6 611s libspex3 libspqr4 libssh2-1-dev libssl-dev libstdc++-14-dev 611s libsuitesparse-dev libsuitesparse-mongoose3 libsuitesparseconfig7 611s libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 libsuperlu7 libsz2 611s libtasn1-6-dev libthai-data libthai0 libtiff6 libtool libtsan2 libubsan1 611s libucx0 libumfpack6 libunbound8 libwebp7 libx11-dev libxapian30 libxau-dev 611s libxaw7 libxcb-render0 libxcb-shm0 libxcb1-dev libxdmcp-dev libxml2 611s libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6t64 libyaml-dev 611s libzstd-dev m4 mpi-default-bin mpi-default-dev nettle-dev ocl-icd-libopencl1 611s ocl-icd-opencl-dev opencl-c-headers opencl-clhpp-headers openmpi-bin 611s openmpi-common petsc-dev petsc64-dev pkg-config pkgconf pkgconf-bin 611s po-debconf pybind11-dev python-petsc4py-doc python3 python3-alabaster 611s python3-all python3-all-dev python3-defusedxml python3-dev python3-dijitso 611s python3-distlib python3-docutils python3-dolfin python3-dolfin-real 611s python3-dolfin64-real python3-ffc python3-fiat python3-filelock 611s python3-imagesize python3-iniconfig python3-jaraco.text python3-minimal 611s python3-mpi4py python3-mpmath python3-numpy python3-packaging 611s python3-petsc4py python3-petsc4py-64-real python3-petsc4py-64-real3.21 611s python3-petsc4py-real python3-petsc4py-real3.21 python3-pip python3-pip-whl 611s python3-pkg-resources python3-pkgconfig python3-platformdirs python3-pluggy 611s python3-ply python3-pusimp python3-pybind11 python3-pytest python3-roman 611s python3-setuptools python3-setuptools-whl python3-six python3-slepc4py 611s python3-slepc4py-64-real python3-slepc4py-64-real3.21 python3-slepc4py-real 611s python3-slepc4py-real3.21 python3-snowballstemmer python3-sphinx 611s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 611s python3-ufl-legacy python3-virtualenv python3-wheel python3-wheel-whl 611s python3.12-dev python3.13 python3.13-dev python3.13-minimal sgml-base 611s slepc-dev slepc64-dev sphinx-common sphinx-rtd-theme-common swig valgrind 611s valgrind-mpi x11-common x11proto-dev xml-core xorg-sgml-doctools xtrans-dev 611s zlib1g-dev 611s Suggested packages: 611s autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format 611s elpa-cmake-mode ninja-build cpp-doc gcc-14-locales cpp-14-doc dh-make flit 611s python3-build python3-installer doxygen-latex doxygen-doc doxygen-gui 611s g++-multilib g++-14-multilib gcc-14-doc gcc-multilib manpages-dev flex bison 611s gdb gcc-doc gcc-14-multilib gdb-x86-64-linux-gnu gettext-doc libasprintf-dev 611s libgettextpo-dev gfortran-multilib gfortran-doc gfortran-14-multilib 611s gfortran-14-doc libcoarrays-dev gsfonts graphviz-doc liblapack-doc 611s libboost-doc libboost-graph1.83-dev libboost1.83-doc 611s libboost-container1.83-dev libboost-context1.83-dev 611s libboost-contract1.83-dev libboost-coroutine1.83-dev 611s libboost-exception1.83-dev libboost-fiber1.83-dev 611s libboost-graph-parallel1.83-dev libboost-json1.83-dev 611s libboost-locale1.83-dev libboost-log1.83-dev libboost-mpi-python1.83-dev 611s libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev 611s libboost-random1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev 611s libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev 611s libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libidn-dev 611s libkrb5-dev libldap2-dev libeigen3-doc libfftw3-doc libgd-tools gmp-doc 611s libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc 611s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 611s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 611s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 611s libhwloc-contrib-plugins icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 611s fonts-stix libjs-mathjax-doc libtool-doc libnghttp2-doc openmpi-doc 611s p11-kit-doc libpetsc-real3.21-dbg petsc3.21-doc libluminate-dev 611s libpetsc64-real3.21-dbg scalapack-doc libslepc3.21-dev-examples 611s slepc3.21-doc libssl-doc libstdc++-14-doc libsuperlu-doc gcj-jdk libx11-doc 611s xapian-tools libxcb-doc libyaml-doc m4-doc opencl-icd 611s opencl-clhpp-headers-doc libmail-box-perl pybind11-doc python-dijitso-doc 611s docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french 611s texlive-latex-base texlive-latex-recommended python-mpmath-doc python3-gmpy2 611s python3-matplotlib python-numpy-doc python-ply-doc python-slepc4py-doc 611s python3-stemmer dvipng dvisvgm fonts-freefont-otf imagemagick-6.q16 latexmk 611s sphinx-doc tex-gyre texlive-fonts-extra texlive-fonts-recommended 611s texlive-latex-extra texlive-plain-generic python-sympy-doc 611s python-ufl-legacy-doc python3.13-venv python3.13-doc binfmt-support 611s sgml-base-doc swig-doc swig-examples valgrind-dbg kcachegrind alleyoop 611s valkyrie 611s Recommended packages: 611s python3-matplotlib fonts-liberation libarchive-cpio-perl libgts-bin 611s libheif-plugin-aomenc javascript-common libjson-xs-perl 611s libcoarrays-openmpi-dev libpetsc3.21-dev-examples ksh | mksh | pdksh | zsh 611s libgraphblas-dev libtasn1-doc libgl-dev libmail-sendmail-perl libpaper-utils 611s python3-pil isympy-common gdb 611s The following NEW packages will be installed: 611s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 611s chrpath cmake cmake-data cpp cpp-14 cpp-14-x86-64-linux-gnu 611s cpp-x86-64-linux-gnu debhelper debugedit dh-autoreconf dh-python 611s dh-strip-nondeterminism docutils-common dolfin-bin dolfin-doc doxygen dwz 611s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 611s fonts-font-awesome fonts-lato fonts-mathjax g++ g++-14 611s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 611s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext gfortran gfortran-14 611s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu graphviz icu-devtools 611s intltool-debian libaec-dev libaec0 libamd-comgr2 libamd3 libamdhip64-5 611s libann0 libaom3 libarchive-zip-perl libarpack2-dev libarpack2t64 libasan8 611s libblas-dev libblas3 libblas64-3 libboost-atomic1.83-dev 611s libboost-atomic1.83.0 libboost-chrono-dev libboost-chrono1.83-dev 611s libboost-chrono1.83.0t64 libboost-date-time1.83-dev libboost-date-time1.83.0 611s libboost-dev libboost-filesystem-dev libboost-filesystem1.83-dev 611s libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev 611s libboost-iostreams1.83.0 libboost-math-dev libboost-math1.83-dev 611s libboost-math1.83.0 libboost-mpi-dev libboost-mpi1.83-dev libboost-mpi1.83.0 611s libboost-program-options-dev libboost-program-options1.83-dev 611s libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 611s libboost-serialization-dev libboost-serialization1.83-dev 611s libboost-serialization1.83.0 libboost-system1.83-dev libboost-system1.83.0 611s libboost-thread-dev libboost-thread1.83-dev libboost-thread1.83.0 611s libboost-timer-dev libboost-timer1.83-dev libboost-timer1.83.0 611s libboost1.83-dev libbrotli-dev libbtf2 libc6-dbg libcairo2 libcamd3 libcc1-0 611s libccolamd3 libcdt5 libcgraph6 libcholmod5 libcolamd3 libcombblas2.0.0t64 611s libcurl4-openssl-dev libcxsparse4 libdatrie1 libde265-0 libdebhelper-perl 611s libdeflate0 libdolfin-dev libdolfin-dev-common libdolfin2019.2t64 611s libdolfin64-2019.2t64 libdolfin64-dev libdrm-amdgpu1 libeigen3-dev 611s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 611s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libexpat1-dev 611s libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 611s libfftw3-mpi-dev libfftw3-mpi3 libfftw3-quad3 libfftw3-single3 611s libfile-stripnondeterminism-perl libfmt10 libfontconfig1 libgcc-14-dev 611s libgd3 libgfortran-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl 611s libgnutls-dane0t64 libgnutls-openssl27t64 libgnutls28-dev libgomp1 611s libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b 611s libhdf5-mpi-dev libhdf5-openmpi-103-1t64 libhdf5-openmpi-cpp-103-1t64 611s libhdf5-openmpi-dev libhdf5-openmpi-fortran-102t64 libhdf5-openmpi-hl-100t64 611s libhdf5-openmpi-hl-cpp-100t64 libhdf5-openmpi-hl-fortran-100t64 611s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhsa-runtime64-1 611s libhsakmt1 libhwasan0 libhwloc-dev libhwloc-plugins libhwloc15 611s libhypre-2.31.0 libhypre-dev libhypre64m-2.31.0 libhypre64m-dev libibmad5 611s libibumad3 libibverbs-dev libice6 libicu-dev libidn2-dev libimagequant0 611s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 611s libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-mathjax 611s libjs-modernizr libjs-sphinxdoc libjs-underscore libjson-perl libjsoncpp26 611s libklu2 liblab-gamut1 liblapack-dev liblapack3 liblapack64-3 libldl3 611s liblerc4 libllvm17t64 liblsan0 libltdl-dev libltdl7 libmetis5 libmpc3 611s libmumps-5.7 libmumps-64pord-5.7 libmumps-dev libmumps-headers-dev 611s libmumps64-dev libmunge2 libnghttp2-dev libnl-3-dev libnl-route-3-dev 611s libnuma-dev libopenblas64-0 libopenblas64-0-pthread libopenblas64-dev 611s libopenblas64-pthread-dev libopenmpi-dev libopenmpi3t64 libp11-kit-dev 611s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libparpack2-dev 611s libparpack2t64 libparu1 libpathplan4 libpciaccess0 libpetsc-real-dev 611s libpetsc-real3.21 libpetsc-real3.21-dev libpetsc3.21-dev-common 611s libpetsc64-real-dev libpetsc64-real3.21 libpetsc64-real3.21-dev 611s libpixman-1-0 libpkgconf3 libpmix-dev libpmix2t64 libpsl-dev 611s libpsm-infinipath1 libpsm2-2 libptscotch-7.0 libptscotch-dev 611s libpython3-all-dev libpython3-dev libpython3.12-dev libpython3.13 611s libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib libquadmath0 611s libraqm0 librbio4 librdmacm1t64 librhash1 librtmp-dev libscalapack-mpi-dev 611s libscalapack-openmpi-dev libscalapack-openmpi2.2 libscotch-7.0 libscotch-dev 611s libsharpyuv0 libslepc-real3.21 libslepc-real3.21-dev libslepc64-real3.21 611s libslepc64-real3.21-dev libsm6 libspex3 libspqr4 libssh2-1-dev libssl-dev 611s libstdc++-14-dev libsuitesparse-dev libsuitesparse-mongoose3 611s libsuitesparseconfig7 libsuperlu-dev libsuperlu-dist-dev libsuperlu-dist8 611s libsuperlu7 libsz2 libtasn1-6-dev libthai-data libthai0 libtiff6 libtool 611s libtsan2 libubsan1 libucx0 libumfpack6 libunbound8 libwebp7 libx11-dev 611s libxapian30 libxau-dev libxaw7 libxcb-render0 libxcb-shm0 libxcb1-dev 611s libxdmcp-dev libxml2-dev libxmu6 libxnvctrl0 libxpm4 libxrender1 libxt6t64 611s libyaml-dev libzstd-dev m4 mpi-default-bin mpi-default-dev nettle-dev 611s ocl-icd-libopencl1 ocl-icd-opencl-dev opencl-c-headers opencl-clhpp-headers 611s openmpi-bin openmpi-common petsc-dev petsc64-dev pkg-config pkgconf 611s pkgconf-bin po-debconf pybind11-dev python-petsc4py-doc python3-alabaster 611s python3-all python3-all-dev python3-defusedxml python3-dev python3-dijitso 611s python3-distlib python3-docutils python3-dolfin python3-dolfin-real 611s python3-dolfin64-real python3-ffc python3-fiat python3-filelock 611s python3-imagesize python3-iniconfig python3-jaraco.text python3-mpi4py 611s python3-mpmath python3-numpy python3-packaging python3-petsc4py 611s python3-petsc4py-64-real python3-petsc4py-64-real3.21 python3-petsc4py-real 611s python3-petsc4py-real3.21 python3-pip python3-pip-whl python3-pkgconfig 611s python3-platformdirs python3-pluggy python3-ply python3-pusimp 611s python3-pybind11 python3-pytest python3-roman python3-setuptools-whl 611s python3-six python3-slepc4py python3-slepc4py-64-real 611s python3-slepc4py-64-real3.21 python3-slepc4py-real python3-slepc4py-real3.21 611s python3-snowballstemmer python3-sphinx python3-sphinx-rtd-theme 611s python3-sphinxcontrib.jquery python3-sympy python3-ufl-legacy 611s python3-virtualenv python3-wheel python3-wheel-whl python3.12-dev python3.13 611s python3.13-dev python3.13-minimal sgml-base slepc-dev slepc64-dev 611s sphinx-common sphinx-rtd-theme-common swig valgrind valgrind-mpi x11-common 611s x11proto-dev xml-core xorg-sgml-doctools xtrans-dev zlib1g-dev 611s The following packages will be upgraded: 611s curl libbrotli1 libcurl3t64-gnutls libcurl4t64 libpython3-stdlib libxml2 611s python3 python3-minimal python3-pkg-resources python3-setuptools 611s 10 upgraded, 405 newly installed, 0 to remove and 67 not upgraded. 611s Need to get 442 MB/442 MB of archives. 611s After this operation, 1929 MB of additional disk space will be used. 611s Get:1 /tmp/autopkgtest.8KRSRk/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [1204 B] 611s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 611s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 611s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 611s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 612s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 612s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 612s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 612s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2build1 [772 kB] 612s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 612s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 612s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 612s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 612s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 612s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 612s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 612s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 612s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 612s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 612s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 612s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 612s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 612s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 612s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 612s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 612s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 612s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 612s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 612s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 612s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 613s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 613s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 613s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 613s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 613s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 613s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 613s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 613s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 613s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 613s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 613s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 chrpath amd64 0.18-1 [13.4 kB] 613s Get:42 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cmake-data all 3.31.0-1 [2290 kB] 614s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 curl amd64 8.9.1-2ubuntu3 [243 kB] 614s Get:44 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libbrotli1 amd64 1.1.0-2build3 [365 kB] 614s Get:45 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcurl4t64 amd64 8.9.1-2ubuntu3 [420 kB] 614s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-2 [89.9 kB] 614s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 librhash1 amd64 1.4.5-1 [132 kB] 614s Get:48 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 cmake amd64 3.31.0-1 [12.6 MB] 614s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 614s Get:50 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libtool all 2.4.7-8 [166 kB] 614s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 614s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 614s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 614s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 614s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 614s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 614s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 614s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 614s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 614s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 614s Get:61 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-setuptools all 75.2.0-1 [657 kB] 614s Get:62 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-pkg-resources all 75.2.0-1 [134 kB] 614s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-jaraco.text all 4.0.0-1 [11.5 kB] 614s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 614s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 614s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 614s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfmt10 amd64 10.1.1+ds1-4 [79.0 kB] 614s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxapian30 amd64 1.4.25-1 [718 kB] 614s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 doxygen amd64 1.9.8+ds-2ubuntu2 [5915 kB] 614s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 614s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 614s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 614s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 614s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 614s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 614s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 614s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 614s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-8ubuntu1 [965 kB] 614s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [12.5 MB] 615s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-8ubuntu1 [11.9 kB] 615s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 615s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 615s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann0 amd64 1.1.2+doc-9build1 [25.5 kB] 615s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcdt5 amd64 2.42.4-2build3 [22.3 kB] 615s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcgraph6 amd64 2.42.4-2build3 [45.1 kB] 615s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 615s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0~rc1-1 [2762 kB] 615s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.3-1 [11.5 kB] 615s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 615s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [8968 B] 615s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.3-1 [415 kB] 615s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 615s Get:93 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu1 [179 kB] 615s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 615s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 615s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 615s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 615s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 615s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 615s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblerc4 amd64 4.0.0+ds-5 [271 kB] 615s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 615s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 615s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 615s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libgd3 amd64 2.3.3-12ubuntu3 [127 kB] 615s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2build1 [161 kB] 615s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 615s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 615s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 615s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 615s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 615s Get:111 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl7 amd64 2.4.7-8 [43.9 kB] 615s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 615s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 615s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 615s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [252 kB] 615s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [51.6 kB] 615s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [29.1 kB] 615s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpathplan4 amd64 2.42.4-2build3 [24.5 kB] 615s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgvc6 amd64 2.42.4-2build3 [721 kB] 615s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgvpr2 amd64 2.42.4-2build3 [189 kB] 615s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblab-gamut1 amd64 2.42.4-2build3 [1898 kB] 616s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 616s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 616s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 616s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 616s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 616s Get:127 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 616s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 graphviz amd64 2.42.4-2build3 [649 kB] 616s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 74.2-1ubuntu4 [213 kB] 616s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 616s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 616s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 617s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [13.4 kB] 617s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd3 amd64 1:7.8.3+dfsg-2 [31.1 kB] 617s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 617s Get:136 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libhsakmt1 amd64 6.1.2+ds-1 [65.2 kB] 617s Get:137 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libhsa-runtime64-1 amd64 6.1.2-2 [563 kB] 617s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 617s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 617s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 617s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-1.1ubuntu1 [107 kB] 617s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-3build2 [172 kB] 617s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-3build2 [5249 kB] 617s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2-dev amd64 3.9.1-1.1ubuntu1 [123 kB] 617s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas64-3 amd64 3.12.0-3build2 [231 kB] 617s Get:146 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-3.2ubuntu3 [10.7 MB] 618s Get:147 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-atomic1.83.0 amd64 1.83.0-3.2ubuntu3 [240 kB] 618s Get:148 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-atomic1.83-dev amd64 1.83.0-3.2ubuntu3 [235 kB] 618s Get:149 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-chrono1.83.0t64 amd64 1.83.0-3.2ubuntu3 [245 kB] 618s Get:150 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-chrono1.83-dev amd64 1.83.0-3.2ubuntu3 [247 kB] 618s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-chrono-dev amd64 1.83.0.2ubuntu1 [4832 B] 618s Get:152 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-date-time1.83.0 amd64 1.83.0-3.2ubuntu3 [236 kB] 618s Get:153 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-3.2ubuntu3 [343 kB] 618s Get:154 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-serialization1.83-dev amd64 1.83.0-3.2ubuntu3 [387 kB] 618s Get:155 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-date-time1.83-dev amd64 1.83.0-3.2ubuntu3 [239 kB] 618s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 618s Get:157 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-3.2ubuntu3 [286 kB] 618s Get:158 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-system1.83.0 amd64 1.83.0-3.2ubuntu3 [237 kB] 618s Get:159 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-system1.83-dev amd64 1.83.0-3.2ubuntu3 [231 kB] 618s Get:160 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-filesystem1.83-dev amd64 1.83.0-3.2ubuntu3 [304 kB] 618s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-filesystem-dev amd64 1.83.0.2ubuntu1 [4256 B] 618s Get:162 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-regex1.83.0 amd64 1.83.0-3.2ubuntu3 [342 kB] 618s Get:163 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 74.2-1ubuntu4 [11.9 MB] 618s Get:164 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-regex1.83-dev amd64 1.83.0-3.2ubuntu3 [359 kB] 618s Get:165 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-3.2ubuntu3 [260 kB] 618s Get:166 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-iostreams1.83-dev amd64 1.83.0-3.2ubuntu3 [264 kB] 618s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-iostreams-dev amd64 1.83.0.2ubuntu1 [4212 B] 618s Get:168 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-math1.83.0 amd64 1.83.0-3.2ubuntu3 [442 kB] 618s Get:169 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-math1.83-dev amd64 1.83.0-3.2ubuntu3 [607 kB] 618s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-math-dev amd64 1.83.0.2ubuntu1 [4434 B] 618s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 618s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 618s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 618s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 618s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 618s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 618s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 618s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 618s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 618s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 618s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 618s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.3-2 [697 kB] 618s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 618s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 618s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 618s Get:186 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 618s Get:187 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-mpi1.83.0 amd64 1.83.0-3.2ubuntu3 [271 kB] 618s Get:188 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-common all 5.0.5-6 [95.6 kB] 618s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-3-dev amd64 3.7.0-0.3build2 [99.9 kB] 618s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 libnl-route-3-dev amd64 3.7.0-0.3build2 [216 kB] 618s Get:191 http://ftpmaster.internal/ubuntu plucky/main amd64 libibverbs-dev amd64 52.0-2ubuntu1 [682 kB] 618s Get:192 http://ftpmaster.internal/ubuntu plucky/main amd64 libnuma-dev amd64 2.0.18-1build1 [37.0 kB] 618s Get:193 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libltdl-dev amd64 2.4.7-8 [172 kB] 618s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-dev amd64 2.11.2-1 [286 kB] 618s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 618s Get:196 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10 [64.2 kB] 618s Get:197 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10 [15.7 kB] 618s Get:198 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-dev amd64 2.1.12-stable-10 [274 kB] 618s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 618s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix-dev amd64 5.0.3-2 [4042 kB] 618s Get:201 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 618s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 618s Get:203 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 openmpi-bin amd64 5.0.5-6 [169 kB] 619s Get:204 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi-dev amd64 5.0.5-6 [1085 kB] 619s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-dev amd64 1.17 [3106 B] 619s Get:206 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-mpi1.83-dev amd64 1.83.0-3.2ubuntu3 [296 kB] 619s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-mpi-dev amd64 1.83.0.2ubuntu1 [4304 B] 619s Get:208 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-program-options1.83.0 amd64 1.83.0-3.2ubuntu3 [322 kB] 619s Get:209 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-program-options1.83-dev amd64 1.83.0-3.2ubuntu3 [390 kB] 619s Get:210 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-program-options-dev amd64 1.83.0.2ubuntu1 [4250 B] 619s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-serialization-dev amd64 1.83.0.2ubuntu1 [4442 B] 619s Get:212 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2ubuntu3 [278 kB] 619s Get:213 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-thread1.83-dev amd64 1.83.0-3.2ubuntu3 [281 kB] 619s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-thread-dev amd64 1.83.0.2ubuntu1 [4246 B] 619s Get:215 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-timer1.83.0 amd64 1.83.0-3.2ubuntu3 [241 kB] 619s Get:216 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-timer1.83-dev amd64 1.83.0-3.2ubuntu3 [236 kB] 619s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-timer-dev amd64 1.83.0.2ubuntu1 [4352 B] 619s Get:218 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libbrotli-dev amd64 1.1.0-2build3 [381 kB] 619s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [15.1 kB] 619s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [27.6 kB] 619s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [27.5 kB] 619s Get:222 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [19.5 kB] 619s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [876 kB] 619s Get:224 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcombblas2.0.0t64 amd64 2.0.0-6 [249 kB] 619s Get:225 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcurl3t64-gnutls amd64 8.9.1-2ubuntu3 [412 kB] 619s Get:226 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn2-dev amd64 2.3.7-2build2 [120 kB] 619s Get:227 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 619s Get:228 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 619s Get:229 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 619s Get:230 http://ftpmaster.internal/ubuntu plucky/main amd64 libnghttp2-dev amd64 1.64.0-1 [123 kB] 619s Get:231 http://ftpmaster.internal/ubuntu plucky/main amd64 libpsl-dev amd64 0.21.2-1.1build1 [76.4 kB] 619s Get:232 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2ubuntu7 [10.0 kB] 619s Get:233 http://ftpmaster.internal/ubuntu plucky/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2ubuntu7 [341 kB] 619s Get:234 http://ftpmaster.internal/ubuntu plucky/main amd64 libunbound8 amd64 1.20.0-1ubuntu2.1 [447 kB] 619s Get:235 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-dane0t64 amd64 3.8.8-2ubuntu1 [24.3 kB] 619s Get:236 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2ubuntu1 [24.5 kB] 619s Get:237 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit-dev amd64 0.25.5-2ubuntu1 [22.7 kB] 619s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6-dev amd64 4.19.0-3build1 [90.5 kB] 619s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 nettle-dev amd64 3.10-1 [1172 kB] 619s Get:240 http://ftpmaster.internal/ubuntu plucky/main amd64 libgnutls28-dev amd64 3.8.8-2ubuntu1 [1108 kB] 620s Get:241 http://ftpmaster.internal/ubuntu plucky/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2build7 [66.7 kB] 620s Get:242 http://ftpmaster.internal/ubuntu plucky/main amd64 libssl-dev amd64 3.3.1-2ubuntu2 [2686 kB] 620s Get:243 http://ftpmaster.internal/ubuntu plucky/main amd64 libssh2-1-dev amd64 1.11.1-1 [292 kB] 620s Get:244 http://ftpmaster.internal/ubuntu plucky/main amd64 libzstd-dev amd64 1.5.6+dfsg-1 [371 kB] 620s Get:245 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libcurl4-openssl-dev amd64 8.9.1-2ubuntu3 [512 kB] 620s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [83.9 kB] 620s Get:247 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [196 kB] 620s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 620s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1337 kB] 620s Get:250 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1 [839 kB] 620s Get:251 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-long3 amd64 3.3.10-2fakesync1 [377 kB] 620s Get:252 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-single3 amd64 3.3.10-2fakesync1 [871 kB] 620s Get:253 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libfftw3-mpi3 amd64 3.3.10-2fakesync1 [52.6 kB] 620s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmetis5 amd64 5.1.0.dfsg-7build3 [181 kB] 620s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 libptscotch-7.0 amd64 7.0.5-1ubuntu1 [681 kB] 620s Get:256 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5 [771 kB] 620s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre-2.31.0 amd64 2.31.0-1exp2 [1762 kB] 620s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 libklu2 amd64 1:7.8.3+dfsg-2 [98.9 kB] 620s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.17 [2296 B] 620s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-openmpi2.2 amd64 2.2.1-3.1ubuntu2 [1758 kB] 620s Get:261 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-5.7 amd64 5.7.3-3 [2264 kB] 620s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [169 kB] 620s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [220 kB] 620s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [337 kB] 620s Get:265 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc-real3.21 amd64 3.21.6+dfsg1-2ubuntu2 [7917 kB] 620s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 libparpack2t64 amd64 3.9.1-1.1ubuntu1 [98.9 kB] 620s Get:267 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc-real3.21 amd64 3.21.2+dfsg1-2 [1322 kB] 620s Get:268 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [2055 kB] 620s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-0-pthread amd64 0.3.28+ds-3 [8558 kB] 620s Get:270 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack64-3 amd64 3.12.0-3build2 [2525 kB] 620s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre64m-2.31.0 amd64 2.31.0-1exp2 [1621 kB] 620s Get:272 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-64pord-5.7 amd64 5.7.3-3 [2262 kB] 621s Get:273 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc64-real3.21 amd64 3.21.6+dfsg1-2ubuntu2 [7793 kB] 621s Get:274 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc64-real3.21 amd64 3.21.2+dfsg1-2 [1318 kB] 621s Get:275 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin64-2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [2053 kB] 621s Get:276 http://ftpmaster.internal/ubuntu plucky/main amd64 pkg-config amd64 1.8.1-4 [7362 B] 621s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 libeigen3-dev all 3.4.0-4build1 [1055 kB] 621s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-fortran-102t64 amd64 1.10.10+repack-4ubuntu3 [84.7 kB] 621s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.7 kB] 621s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-hl-fortran-100t64 amd64 1.10.10+repack-4ubuntu3 [31.3 kB] 621s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-cpp-103-1t64 amd64 1.10.10+repack-4ubuntu3 [124 kB] 621s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-hl-cpp-100t64 amd64 1.10.10+repack-4ubuntu3 [11.2 kB] 621s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec-dev amd64 1.1.3-1 [19.8 kB] 621s Get:284 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu1 [324 kB] 621s Get:285 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 621s Get:286 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 621s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-dev amd64 1.10.10+repack-4ubuntu3 [2854 kB] 621s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-mpi-dev amd64 1.10.10+repack-4ubuntu3 [4616 B] 621s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 libldl3 amd64 1:7.8.3+dfsg-2 [14.4 kB] 621s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [37.8 kB] 621s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 librbio4 amd64 1:7.8.3+dfsg-2 [30.5 kB] 621s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspex3 amd64 1:7.8.3+dfsg-2 [49.1 kB] 621s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 libparu1 amd64 1:7.8.3+dfsg-2 [57.1 kB] 621s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1939 kB] 621s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscotch-7.0 amd64 7.0.5-1ubuntu1 [449 kB] 621s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscotch-dev amd64 7.0.5-1ubuntu1 [1607 kB] 621s Get:297 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2build1 [786 kB] 621s Get:298 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 621s Get:299 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-mpi4py amd64 4.0.0-9 [1686 kB] 621s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-4 [24.3 kB] 621s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 621s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 621s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fiat all 2019.2.0~git20210419.7d418fa-5 [69.2 kB] 621s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufl-legacy all 1:2022.3.0-3 [154 kB] 621s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ffc all 2019.2.0~legacy20230509.35df986-3 [227 kB] 622s Get:306 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 622s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 libptscotch-dev amd64 7.0.5-1ubuntu1 [1382 kB] 622s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-openmpi-dev amd64 2.2.1-3.1ubuntu2 [7504 B] 622s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 libscalapack-mpi-dev amd64 2.2.1-3.1ubuntu2 [2324 B] 622s Get:310 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-quad3 amd64 3.3.10-2fakesync1 [669 kB] 622s Get:311 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-bin amd64 3.3.10-2fakesync1 [39.3 kB] 622s Get:312 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libfftw3-dev amd64 3.3.10-2fakesync1 [2345 kB] 622s Get:313 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libfftw3-mpi-dev amd64 3.3.10-2fakesync1 [59.8 kB] 622s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 opencl-c-headers all 3.0~2024.05.08-1 [47.6 kB] 622s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 opencl-clhpp-headers all 3.0~2024.05.08-1ubuntu1 [50.9 kB] 622s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-opencl-dev amd64 2.3.2-1build1 [2448 B] 622s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [20.8 kB] 622s Get:318 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5 [1096 kB] 622s Get:319 http://ftpmaster.internal/ubuntu plucky/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] 622s Get:320 http://ftpmaster.internal/ubuntu plucky/main amd64 x11proto-dev all 2024.1-1 [606 kB] 622s Get:321 http://ftpmaster.internal/ubuntu plucky/main amd64 libxau-dev amd64 1:1.0.11-1 [9798 B] 622s Get:322 http://ftpmaster.internal/ubuntu plucky/main amd64 libxdmcp-dev amd64 1:1.1.3-0ubuntu6 [26.5 kB] 622s Get:323 http://ftpmaster.internal/ubuntu plucky/main amd64 xtrans-dev all 1.4.0-1 [68.9 kB] 622s Get:324 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb1-dev amd64 1.17.0-2 [86.4 kB] 622s Get:325 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-dev amd64 2:1.8.10-2 [777 kB] 622s Get:326 http://ftpmaster.internal/ubuntu plucky/main amd64 libyaml-dev amd64 0.2.5-1build1 [62.2 kB] 622s Get:327 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc3.21-dev-common all 3.21.6+dfsg1-2ubuntu2 [316 kB] 622s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre-dev amd64 2.31.0-1exp2 [2100 kB] 622s Get:329 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-headers-dev all 5.7.3-3 [21.8 kB] 622s Get:330 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps-dev amd64 5.7.3-3 [2210 kB] 622s Get:331 http://ftpmaster.internal/ubuntu plucky/main amd64 libc6-dbg amd64 2.40-1ubuntu3 [7627 kB] 623s Get:332 http://ftpmaster.internal/ubuntu plucky/main amd64 valgrind amd64 1:3.23.0-0ubuntu2 [14.7 MB] 623s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 valgrind-mpi amd64 1:3.23.0-0ubuntu2 [44.2 kB] 623s Get:334 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc-real3.21-dev amd64 3.21.6+dfsg1-2ubuntu2 [7112 kB] 623s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 libparpack2-dev amd64 3.9.1-1.1ubuntu1 [113 kB] 623s Get:336 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc-real3.21-dev amd64 3.21.2+dfsg1-2 [6002 kB] 624s Get:337 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin-dev amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [14.8 kB] 624s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-0 amd64 0.3.28+ds-3 [5040 B] 624s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-pthread-dev amd64 0.3.28+ds-3 [6419 kB] 624s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenblas64-dev amd64 0.3.28+ds-3 [5106 B] 624s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhypre64m-dev amd64 2.31.0-1exp2 [1929 kB] 624s Get:342 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libmumps64-dev amd64 5.7.3-3 [2208 kB] 624s Get:343 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc64-real3.21-dev amd64 3.21.6+dfsg1-2ubuntu2 [7121 kB] 624s Get:344 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libslepc64-real3.21-dev amd64 3.21.2+dfsg1-2 [6028 kB] 624s Get:345 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libdolfin64-dev amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [6814 B] 624s Get:346 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 624s Get:347 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 624s Get:348 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 625s Get:349 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 625s Get:350 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc-real-dev all 3.21.6+dfsg1-2ubuntu2 [3922 B] 625s Get:351 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpetsc64-real-dev all 3.21.6+dfsg1-2ubuntu2 [3938 B] 625s Get:352 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 625s Get:353 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 625s Get:354 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 625s Get:355 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 625s Get:356 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 625s Get:357 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 625s Get:358 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 petsc64-dev all 3.21.6+dfsg1-2ubuntu2 [3962 B] 625s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybind11-dev all 2.13.6-1 [168 kB] 625s Get:360 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 625s Get:361 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-petsc4py-doc all 3.21.6-2ubuntu2 [747 kB] 625s Get:362 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 625s Get:363 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 625s Get:364 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 625s Get:365 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 625s Get:366 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 625s Get:367 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 625s Get:368 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 625s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-distlib all 0.3.9-1 [267 kB] 625s Get:370 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 625s Get:371 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 625s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 swig amd64 4.2.1-1 [1182 kB] 625s Get:373 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-real3.21 amd64 3.21.6-2ubuntu2 [2219 kB] 626s Get:374 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-real all 3.21.6-2ubuntu2 [2658 B] 626s Get:375 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-real3.21 amd64 3.21.2-1ubuntu2 [544 kB] 626s Get:376 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-real all 3.21.2-1ubuntu2 [2574 B] 626s Get:377 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dolfin-real amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [1248 kB] 626s Get:378 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-64-real3.21 amd64 3.21.6-2ubuntu2 [2178 kB] 626s Get:379 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py-64-real all 3.21.6-2ubuntu2 [2510 B] 626s Get:380 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-64-real3.21 amd64 3.21.2-1ubuntu2 [540 kB] 626s Get:381 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py-64-real all 3.21.2-1ubuntu2 [2556 B] 626s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pkgconfig all 1.5.5-2 [7888 B] 626s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybind11 all 2.13.6-1 [176 kB] 626s Get:384 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dolfin64-real amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [1260 kB] 626s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-filelock all 3.16.1-1 [12.8 kB] 626s Get:386 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 626s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 626s Get:388 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 626s Get:389 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-wheel all 0.45.0-1 [57.7 kB] 626s Get:390 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pip all 24.2+dfsg-1ubuntu0.1 [1398 kB] 626s Get:391 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pip-whl all 24.2+dfsg-1ubuntu0.1 [1420 kB] 626s Get:392 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 626s Get:393 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 626s Get:394 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ply all 3.11-7 [45.4 kB] 626s Get:395 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pusimp all 0.1.1-1 [10.3 kB] 626s Get:396 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 626s Get:397 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-setuptools-whl all 75.2.0-1 [1158 kB] 626s Get:398 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 626s Get:399 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 626s Get:400 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 626s Get:401 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 626s Get:402 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 626s Get:403 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 626s Get:404 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB] 626s Get:405 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-wheel-whl all 0.45.0-1 [74.6 kB] 626s Get:406 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-virtualenv all 20.27.0+ds-1 [71.9 kB] 626s Get:407 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 slepc64-dev amd64 3.21.2+dfsg1-2 [2230 B] 626s Get:408 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-petsc4py all 3.21.6-2ubuntu2 [2308 B] 626s Get:409 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-slepc4py all 3.21.2-1ubuntu2 [2248 B] 626s Get:410 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dolfin amd64 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [26.9 kB] 626s Get:411 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 dolfin-doc all 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [13.0 MB] 627s Get:412 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 dolfin-bin all 2019.2.0~legacy20240219.1c52e83-10ubuntu2 [12.1 kB] 627s Get:413 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 petsc-dev all 3.21.6+dfsg1-2ubuntu2 [7482 B] 627s Get:414 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 slepc-dev amd64 3.21.2+dfsg1-2 [4824 B] 627s Get:415 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 628s Fetched 442 MB in 16s (27.1 MB/s) 628s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 628s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 628s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 628s Setting up python3-minimal (3.12.7-1) ... 628s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75589 files and directories currently installed.) 628s Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... 628s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 628s Preparing to unpack .../001-libpython3-stdlib_3.12.7-1_amd64.deb ... 628s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 628s Selecting previously unselected package fonts-lato. 628s Preparing to unpack .../002-fonts-lato_2.015-1_all.deb ... 628s Unpacking fonts-lato (2.015-1) ... 628s Selecting previously unselected package libpython3.13-minimal:amd64. 628s Preparing to unpack .../003-libpython3.13-minimal_3.13.0-2_amd64.deb ... 628s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 629s Selecting previously unselected package python3.13-minimal. 629s Preparing to unpack .../004-python3.13-minimal_3.13.0-2_amd64.deb ... 629s Unpacking python3.13-minimal (3.13.0-2) ... 629s Selecting previously unselected package sgml-base. 629s Preparing to unpack .../005-sgml-base_1.31_all.deb ... 629s Unpacking sgml-base (1.31) ... 629s Preparing to unpack .../006-libxml2_2.12.7+dfsg+really2.9.14-0.2build1_amd64.deb ... 629s Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) over (2.12.7+dfsg-3) ... 629s Selecting previously unselected package m4. 629s Preparing to unpack .../007-m4_1.4.19-4build1_amd64.deb ... 629s Unpacking m4 (1.4.19-4build1) ... 629s Selecting previously unselected package autoconf. 629s Preparing to unpack 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libubsan1:amd64 (14.2.0-8ubuntu1) ... 629s Selecting previously unselected package libhwasan0:amd64. 629s Preparing to unpack .../025-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 629s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 629s Selecting previously unselected package libquadmath0:amd64. 629s Preparing to unpack .../026-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 629s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 629s Selecting previously unselected package libgcc-14-dev:amd64. 629s Preparing to unpack .../027-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 629s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 630s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 630s Preparing to unpack .../028-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 630s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 630s Selecting previously unselected package gcc-14. 630s Preparing to unpack .../029-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 630s Unpacking gcc-14 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(13.20ubuntu1) ... 631s Selecting previously unselected package libtool. 631s Preparing to unpack .../047-libtool_2.4.7-8_all.deb ... 631s Unpacking libtool (2.4.7-8) ... 631s Selecting previously unselected package dh-autoreconf. 631s Preparing to unpack .../048-dh-autoreconf_20_all.deb ... 631s Unpacking dh-autoreconf (20) ... 631s Selecting previously unselected package libarchive-zip-perl. 631s Preparing to unpack .../049-libarchive-zip-perl_1.68-1_all.deb ... 631s Unpacking libarchive-zip-perl (1.68-1) ... 631s Selecting previously unselected package libfile-stripnondeterminism-perl. 631s Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 631s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 631s Selecting previously unselected package dh-strip-nondeterminism. 631s Preparing to unpack .../051-dh-strip-nondeterminism_1.14.0-1_all.deb ... 631s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 631s Selecting previously unselected package debugedit. 631s Preparing to unpack .../052-debugedit_1%3a5.1-1_amd64.deb ... 631s Unpacking debugedit (1:5.1-1) ... 631s Selecting previously unselected package dwz. 631s Preparing to unpack .../053-dwz_0.15-1build6_amd64.deb ... 631s Unpacking dwz (0.15-1build6) ... 631s Selecting previously unselected package gettext. 631s Preparing to unpack .../054-gettext_0.22.5-2_amd64.deb ... 631s Unpacking gettext (0.22.5-2) ... 631s Selecting previously unselected package intltool-debian. 631s Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ... 631s Unpacking intltool-debian (0.35.0+20060710.6) ... 631s Selecting previously unselected package po-debconf. 631s Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... 631s Unpacking po-debconf (1.0.21+nmu1) ... 631s Selecting previously unselected package debhelper. 631s Preparing to unpack .../057-debhelper_13.20ubuntu1_all.deb ... 631s Unpacking debhelper (13.20ubuntu1) ... 631s Preparing to unpack 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Selecting previously unselected package libjpeg-turbo8:amd64. 633s Preparing to unpack .../090-libjpeg-turbo8_2.1.5-3ubuntu1_amd64.deb ... 633s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu1) ... 633s Selecting previously unselected package libjpeg8:amd64. 633s Preparing to unpack .../091-libjpeg8_8c-2ubuntu11_amd64.deb ... 633s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 633s Selecting previously unselected package libgraphite2-3:amd64. 633s Preparing to unpack .../092-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 633s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 633s Selecting previously unselected package libharfbuzz0b:amd64. 633s Preparing to unpack .../093-libharfbuzz0b_10.0.1-1_amd64.deb ... 633s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 633s Selecting previously unselected package libraqm0:amd64. 633s Preparing to unpack .../094-libraqm0_0.10.1-1build1_amd64.deb ... 633s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 633s Selecting previously unselected package 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633s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 633s Selecting previously unselected package libgd3:amd64. 633s Preparing to unpack .../101-libgd3_2.3.3-12ubuntu3_amd64.deb ... 633s Unpacking libgd3:amd64 (2.3.3-12ubuntu3) ... 633s Selecting previously unselected package libgts-0.7-5t64:amd64. 633s Preparing to unpack .../102-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_amd64.deb ... 633s Unpacking libgts-0.7-5t64:amd64 (0.7.6+darcs121130-5.2build1) ... 634s Selecting previously unselected package libpixman-1-0:amd64. 634s Preparing to unpack .../103-libpixman-1-0_0.44.0-3_amd64.deb ... 634s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 634s Selecting previously unselected package libxcb-render0:amd64. 634s Preparing to unpack .../104-libxcb-render0_1.17.0-2_amd64.deb ... 634s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 634s Selecting previously unselected package libxcb-shm0:amd64. 634s Preparing to unpack .../105-libxcb-shm0_1.17.0-2_amd64.deb ... 634s Unpacking libxcb-shm0:amd64 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638s Selecting previously unselected package libicu-dev:amd64. 638s Preparing to unpack .../160-libicu-dev_74.2-1ubuntu4_amd64.deb ... 638s Unpacking libicu-dev:amd64 (74.2-1ubuntu4) ... 638s Selecting previously unselected package libboost-regex1.83-dev:amd64. 638s Preparing to unpack .../161-libboost-regex1.83-dev_1.83.0-3.2ubuntu3_amd64.deb ... 638s Unpacking libboost-regex1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 638s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 638s Preparing to unpack .../162-libboost-iostreams1.83.0_1.83.0-3.2ubuntu3_amd64.deb ... 638s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 638s Selecting previously unselected package libboost-iostreams1.83-dev:amd64. 638s Preparing to unpack .../163-libboost-iostreams1.83-dev_1.83.0-3.2ubuntu3_amd64.deb ... 638s Unpacking libboost-iostreams1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 638s Selecting previously unselected package libboost-iostreams-dev:amd64. 638s Preparing to unpack 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639s Selecting previously unselected package libpmix2t64:amd64. 639s Preparing to unpack .../179-libpmix2t64_5.0.3-2_amd64.deb ... 639s Unpacking libpmix2t64:amd64 (5.0.3-2) ... 639s Selecting previously unselected package libibumad3:amd64. 639s Preparing to unpack .../180-libibumad3_52.0-2ubuntu1_amd64.deb ... 639s Unpacking libibumad3:amd64 (52.0-2ubuntu1) ... 639s Selecting previously unselected package libibmad5:amd64. 639s Preparing to unpack .../181-libibmad5_52.0-2ubuntu1_amd64.deb ... 639s Unpacking libibmad5:amd64 (52.0-2ubuntu1) ... 639s Selecting previously unselected package libucx0:amd64. 639s Preparing to unpack .../182-libucx0_1.17.0+ds-3build1_amd64.deb ... 639s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 639s Selecting previously unselected package libopenmpi3t64:amd64. 639s Preparing to unpack .../183-libopenmpi3t64_5.0.5-6_amd64.deb ... 639s Unpacking libopenmpi3t64:amd64 (5.0.5-6) ... 639s Selecting previously unselected package libboost-mpi1.83.0. 639s 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unpack .../189-libnuma-dev_2.0.18-1build1_amd64.deb ... 639s Unpacking libnuma-dev:amd64 (2.0.18-1build1) ... 639s Selecting previously unselected package libltdl-dev:amd64. 639s Preparing to unpack .../190-libltdl-dev_2.4.7-8_amd64.deb ... 639s Unpacking libltdl-dev:amd64 (2.4.7-8) ... 639s Selecting previously unselected package libhwloc-dev:amd64. 639s Preparing to unpack .../191-libhwloc-dev_2.11.2-1_amd64.deb ... 639s Unpacking libhwloc-dev:amd64 (2.11.2-1) ... 639s Selecting previously unselected package libevent-2.1-7t64:amd64. 639s Preparing to unpack .../192-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 639s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 639s Selecting previously unselected package libevent-extra-2.1-7t64:amd64. 639s Preparing to unpack .../193-libevent-extra-2.1-7t64_2.1.12-stable-10_amd64.deb ... 639s Unpacking libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10) ... 639s Selecting previously unselected package libevent-openssl-2.1-7t64:amd64. 639s 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package librtmp-dev:amd64. 641s Preparing to unpack .../238-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... 641s Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 641s Selecting previously unselected package libssl-dev:amd64. 641s Preparing to unpack .../239-libssl-dev_3.3.1-2ubuntu2_amd64.deb ... 641s Unpacking libssl-dev:amd64 (3.3.1-2ubuntu2) ... 641s Selecting previously unselected package libssh2-1-dev:amd64. 641s Preparing to unpack .../240-libssh2-1-dev_1.11.1-1_amd64.deb ... 641s Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... 641s Selecting previously unselected package libzstd-dev:amd64. 641s Preparing to unpack .../241-libzstd-dev_1.5.6+dfsg-1_amd64.deb ... 641s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-1) ... 641s Selecting previously unselected package libcurl4-openssl-dev:amd64. 641s Preparing to unpack .../242-libcurl4-openssl-dev_8.9.1-2ubuntu3_amd64.deb ... 641s Unpacking libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu3) ... 641s Selecting previously unselected package libcxsparse4:amd64. 641s Preparing to unpack .../243-libcxsparse4_1%3a7.8.3+dfsg-2_amd64.deb ... 641s Unpacking libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... 641s Selecting previously unselected package libdolfin-dev-common. 641s Preparing to unpack .../244-libdolfin-dev-common_2019.2.0~legacy20240219.1c52e83-10ubuntu2_all.deb ... 641s Unpacking libdolfin-dev-common (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 641s Selecting previously unselected package libsz2:amd64. 641s Preparing to unpack .../245-libsz2_1.1.3-1_amd64.deb ... 641s Unpacking libsz2:amd64 (1.1.3-1) ... 641s Selecting previously unselected package libhdf5-openmpi-103-1t64:amd64. 641s Preparing to unpack .../246-libhdf5-openmpi-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 641s Unpacking libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 641s Selecting previously unselected package libfftw3-double3:amd64. 641s Preparing to unpack .../247-libfftw3-double3_3.3.10-2fakesync1_amd64.deb ... 641s 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(1.10.10+repack-4ubuntu3) ... 642s Selecting previously unselected package libhdf5-openmpi-hl-100t64:amd64. 642s Preparing to unpack .../276-libhdf5-openmpi-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 642s Unpacking libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 643s Selecting previously unselected package libhdf5-openmpi-hl-fortran-100t64:amd64. 643s Preparing to unpack .../277-libhdf5-openmpi-hl-fortran-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 643s Unpacking libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 643s Selecting previously unselected package libhdf5-openmpi-cpp-103-1t64:amd64. 643s Preparing to unpack .../278-libhdf5-openmpi-cpp-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 643s Unpacking libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 643s Selecting previously unselected package libhdf5-openmpi-hl-cpp-100t64:amd64. 643s Preparing to unpack .../279-libhdf5-openmpi-hl-cpp-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 643s Unpacking libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 643s Selecting previously unselected package libaec-dev:amd64. 643s Preparing to unpack .../280-libaec-dev_1.1.3-1_amd64.deb ... 643s Unpacking libaec-dev:amd64 (1.1.3-1) ... 643s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 643s Preparing to unpack .../281-libjpeg-turbo8-dev_2.1.5-3ubuntu1_amd64.deb ... 643s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu1) ... 643s Selecting previously unselected package libjpeg8-dev:amd64. 643s Preparing to unpack .../282-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 643s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 643s Selecting previously unselected package libjpeg-dev:amd64. 643s Preparing to unpack .../283-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 643s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 643s Selecting previously unselected package libhdf5-openmpi-dev. 643s Preparing to unpack .../284-libhdf5-openmpi-dev_1.10.10+repack-4ubuntu3_amd64.deb ... 643s Unpacking libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 643s Selecting previously unselected package libhdf5-mpi-dev. 643s Preparing to unpack .../285-libhdf5-mpi-dev_1.10.10+repack-4ubuntu3_amd64.deb ... 643s Unpacking libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 643s Selecting previously unselected package libldl3:amd64. 643s Preparing to unpack .../286-libldl3_1%3a7.8.3+dfsg-2_amd64.deb ... 643s Unpacking libldl3:amd64 (1:7.8.3+dfsg-2) ... 643s Selecting previously unselected package libsuitesparse-mongoose3:amd64. 643s Preparing to unpack .../287-libsuitesparse-mongoose3_1%3a7.8.3+dfsg-2_amd64.deb ... 643s Unpacking libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... 643s Selecting previously unselected package librbio4:amd64. 643s Preparing to unpack .../288-librbio4_1%3a7.8.3+dfsg-2_amd64.deb ... 643s Unpacking librbio4:amd64 (1:7.8.3+dfsg-2) ... 643s Selecting previously unselected package libspex3:amd64. 643s Preparing to unpack .../289-libspex3_1%3a7.8.3+dfsg-2_amd64.deb ... 643s Unpacking libspex3:amd64 (1:7.8.3+dfsg-2) ... 643s Selecting previously unselected package libparu1:amd64. 643s Preparing to unpack .../290-libparu1_1%3a7.8.3+dfsg-2_amd64.deb ... 643s Unpacking libparu1:amd64 (1:7.8.3+dfsg-2) ... 643s Selecting previously unselected package libsuitesparse-dev:amd64. 643s Preparing to unpack .../291-libsuitesparse-dev_1%3a7.8.3+dfsg-2_amd64.deb ... 643s Unpacking libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... 643s Selecting previously unselected package libscotch-7.0:amd64. 643s Preparing to unpack .../292-libscotch-7.0_7.0.5-1ubuntu1_amd64.deb ... 643s Unpacking libscotch-7.0:amd64 (7.0.5-1ubuntu1) ... 643s Selecting previously unselected package libscotch-dev. 643s Preparing to unpack .../293-libscotch-dev_7.0.5-1ubuntu1_amd64.deb ... 643s Unpacking libscotch-dev (7.0.5-1ubuntu1) ... 643s Selecting previously unselected package libxml2-dev:amd64. 643s Preparing to unpack .../294-libxml2-dev_2.12.7+dfsg+really2.9.14-0.2build1_amd64.deb ... 643s Unpacking libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 643s Selecting previously unselected package python3-numpy. 643s Preparing to unpack .../295-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 643s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 643s Selecting previously unselected package python3-mpi4py. 643s Preparing to unpack .../296-python3-mpi4py_4.0.0-9_amd64.deb ... 643s Unpacking python3-mpi4py (4.0.0-9) ... 643s Selecting previously unselected package python3-dijitso. 643s Preparing to unpack .../297-python3-dijitso_2019.2.0~git20190418.c92dcb0-4_all.deb ... 643s Unpacking python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... 643s Selecting previously unselected package python3-mpmath. 643s Preparing to unpack .../298-python3-mpmath_1.3.0-1_all.deb ... 643s Unpacking python3-mpmath (1.3.0-1) ... 644s Selecting previously unselected package python3-sympy. 644s Preparing to unpack .../299-python3-sympy_1.13.3-1_all.deb ... 644s Unpacking python3-sympy (1.13.3-1) ... 644s Selecting previously unselected package python3-fiat. 644s Preparing to unpack .../300-python3-fiat_2019.2.0~git20210419.7d418fa-5_all.deb ... 644s Unpacking python3-fiat (2019.2.0~git20210419.7d418fa-5) ... 644s Selecting previously unselected package python3-ufl-legacy. 644s Preparing to unpack .../301-python3-ufl-legacy_1%3a2022.3.0-3_all.deb ... 644s Unpacking python3-ufl-legacy (1:2022.3.0-3) ... 644s Selecting previously unselected package python3-ffc. 644s Preparing to unpack .../302-python3-ffc_2019.2.0~legacy20230509.35df986-3_all.deb ... 644s Unpacking python3-ffc (2019.2.0~legacy20230509.35df986-3) ... 644s Selecting previously unselected package libjs-mathjax. 644s Preparing to unpack .../303-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 644s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 644s Selecting previously unselected package libptscotch-dev. 644s Preparing to unpack .../304-libptscotch-dev_7.0.5-1ubuntu1_amd64.deb ... 644s Unpacking libptscotch-dev (7.0.5-1ubuntu1) ... 645s Selecting previously unselected package libscalapack-openmpi-dev:amd64. 645s Preparing to unpack .../305-libscalapack-openmpi-dev_2.2.1-3.1ubuntu2_amd64.deb ... 645s Unpacking libscalapack-openmpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 645s Selecting previously unselected package libscalapack-mpi-dev:amd64. 645s Preparing to unpack .../306-libscalapack-mpi-dev_2.2.1-3.1ubuntu2_amd64.deb ... 645s Unpacking libscalapack-mpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 645s Selecting previously unselected package libfftw3-quad3:amd64. 645s Preparing to unpack .../307-libfftw3-quad3_3.3.10-2fakesync1_amd64.deb ... 645s Unpacking libfftw3-quad3:amd64 (3.3.10-2fakesync1) ... 645s Selecting previously unselected package libfftw3-bin. 645s Preparing to unpack .../308-libfftw3-bin_3.3.10-2fakesync1_amd64.deb ... 645s Unpacking libfftw3-bin (3.3.10-2fakesync1) ... 645s Selecting previously unselected package libfftw3-dev:amd64. 645s Preparing to unpack .../309-libfftw3-dev_3.3.10-2fakesync1_amd64.deb ... 645s Unpacking libfftw3-dev:amd64 (3.3.10-2fakesync1) ... 645s Selecting previously unselected package libfftw3-mpi-dev:amd64. 645s Preparing to unpack .../310-libfftw3-mpi-dev_3.3.10-2fakesync1_amd64.deb ... 645s Unpacking libfftw3-mpi-dev:amd64 (3.3.10-2fakesync1) ... 645s Selecting previously unselected package opencl-c-headers. 645s Preparing to unpack .../311-opencl-c-headers_3.0~2024.05.08-1_all.deb ... 645s Unpacking opencl-c-headers (3.0~2024.05.08-1) ... 645s Selecting previously unselected package opencl-clhpp-headers. 645s Preparing to unpack .../312-opencl-clhpp-headers_3.0~2024.05.08-1ubuntu1_all.deb ... 645s Unpacking opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 645s Selecting previously unselected package ocl-icd-opencl-dev:amd64. 645s Preparing to unpack .../313-ocl-icd-opencl-dev_2.3.2-1build1_amd64.deb ... 645s Unpacking ocl-icd-opencl-dev:amd64 (2.3.2-1build1) ... 645s Selecting previously unselected package libsuperlu-dev:amd64. 645s Preparing to unpack .../314-libsuperlu-dev_7.0.0+dfsg1-2_amd64.deb ... 645s Unpacking libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... 645s Selecting previously unselected package libsuperlu-dist-dev:amd64. 645s Preparing to unpack .../315-libsuperlu-dist-dev_8.2.1+dfsg1-5_amd64.deb ... 645s Unpacking libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5) ... 645s Selecting previously unselected package xorg-sgml-doctools. 645s Preparing to unpack .../316-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... 645s Unpacking xorg-sgml-doctools (1:1.11-1.1) ... 645s Selecting previously unselected package x11proto-dev. 645s Preparing to unpack .../317-x11proto-dev_2024.1-1_all.deb ... 645s Unpacking x11proto-dev (2024.1-1) ... 645s Selecting previously unselected package libxau-dev:amd64. 645s Preparing to unpack .../318-libxau-dev_1%3a1.0.11-1_amd64.deb ... 645s Unpacking libxau-dev:amd64 (1:1.0.11-1) ... 645s Selecting previously unselected package libxdmcp-dev:amd64. 645s Preparing to unpack .../319-libxdmcp-dev_1%3a1.1.3-0ubuntu6_amd64.deb ... 645s Unpacking libxdmcp-dev:amd64 (1:1.1.3-0ubuntu6) ... 645s Selecting previously unselected package xtrans-dev. 645s Preparing to unpack .../320-xtrans-dev_1.4.0-1_all.deb ... 645s Unpacking xtrans-dev (1.4.0-1) ... 645s Selecting previously unselected package libxcb1-dev:amd64. 645s Preparing to unpack .../321-libxcb1-dev_1.17.0-2_amd64.deb ... 645s Unpacking libxcb1-dev:amd64 (1.17.0-2) ... 645s Selecting previously unselected package libx11-dev:amd64. 645s Preparing to unpack .../322-libx11-dev_2%3a1.8.10-2_amd64.deb ... 645s Unpacking libx11-dev:amd64 (2:1.8.10-2) ... 645s Selecting previously unselected package libyaml-dev:amd64. 645s Preparing to unpack .../323-libyaml-dev_0.2.5-1build1_amd64.deb ... 645s Unpacking libyaml-dev:amd64 (0.2.5-1build1) ... 645s Selecting previously unselected package libpetsc3.21-dev-common. 645s Preparing to unpack .../324-libpetsc3.21-dev-common_3.21.6+dfsg1-2ubuntu2_all.deb ... 645s Unpacking libpetsc3.21-dev-common (3.21.6+dfsg1-2ubuntu2) ... 645s Selecting previously unselected package libhypre-dev:amd64. 645s Preparing to unpack .../325-libhypre-dev_2.31.0-1exp2_amd64.deb ... 645s Unpacking libhypre-dev:amd64 (2.31.0-1exp2) ... 645s Selecting previously unselected package libmumps-headers-dev. 645s Preparing to unpack .../326-libmumps-headers-dev_5.7.3-3_all.deb ... 645s Unpacking libmumps-headers-dev (5.7.3-3) ... 645s Selecting previously unselected package libmumps-dev:amd64. 645s Preparing to unpack .../327-libmumps-dev_5.7.3-3_amd64.deb ... 645s Unpacking libmumps-dev:amd64 (5.7.3-3) ... 645s Selecting previously unselected package libc6-dbg:amd64. 645s Preparing to unpack .../328-libc6-dbg_2.40-1ubuntu3_amd64.deb ... 645s Unpacking libc6-dbg:amd64 (2.40-1ubuntu3) ... 646s Selecting previously unselected package valgrind. 646s Preparing to unpack .../329-valgrind_1%3a3.23.0-0ubuntu2_amd64.deb ... 646s Unpacking valgrind (1:3.23.0-0ubuntu2) ... 646s Selecting previously unselected package valgrind-mpi. 646s Preparing to unpack .../330-valgrind-mpi_1%3a3.23.0-0ubuntu2_amd64.deb ... 646s Unpacking valgrind-mpi (1:3.23.0-0ubuntu2) ... 646s Selecting previously unselected package libpetsc-real3.21-dev:amd64. 646s Preparing to unpack .../331-libpetsc-real3.21-dev_3.21.6+dfsg1-2ubuntu2_amd64.deb ... 646s Unpacking libpetsc-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 646s Selecting previously unselected package libparpack2-dev:amd64. 646s Preparing to unpack .../332-libparpack2-dev_3.9.1-1.1ubuntu1_amd64.deb ... 646s Unpacking libparpack2-dev:amd64 (3.9.1-1.1ubuntu1) ... 646s Selecting previously unselected package libslepc-real3.21-dev. 646s Preparing to unpack .../333-libslepc-real3.21-dev_3.21.2+dfsg1-2_amd64.deb ... 646s Unpacking libslepc-real3.21-dev (3.21.2+dfsg1-2) ... 646s Selecting previously unselected package libdolfin-dev:amd64. 646s Preparing to unpack .../334-libdolfin-dev_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 646s Unpacking libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 646s Selecting previously unselected package libopenblas64-0:amd64. 646s Preparing to unpack .../335-libopenblas64-0_0.3.28+ds-3_amd64.deb ... 646s Unpacking libopenblas64-0:amd64 (0.3.28+ds-3) ... 646s Selecting previously unselected package libopenblas64-pthread-dev:amd64. 646s Preparing to unpack .../336-libopenblas64-pthread-dev_0.3.28+ds-3_amd64.deb ... 646s Unpacking libopenblas64-pthread-dev:amd64 (0.3.28+ds-3) ... 646s Selecting previously unselected package libopenblas64-dev:amd64. 646s Preparing to unpack .../337-libopenblas64-dev_0.3.28+ds-3_amd64.deb ... 646s Unpacking libopenblas64-dev:amd64 (0.3.28+ds-3) ... 646s Selecting previously unselected package libhypre64m-dev:amd64. 646s Preparing to unpack .../338-libhypre64m-dev_2.31.0-1exp2_amd64.deb ... 646s Unpacking libhypre64m-dev:amd64 (2.31.0-1exp2) ... 646s Selecting previously unselected package libmumps64-dev:amd64. 646s Preparing to unpack .../339-libmumps64-dev_5.7.3-3_amd64.deb ... 646s Unpacking libmumps64-dev:amd64 (5.7.3-3) ... 647s Selecting previously unselected package libpetsc64-real3.21-dev:amd64. 647s Preparing to unpack .../340-libpetsc64-real3.21-dev_3.21.6+dfsg1-2ubuntu2_amd64.deb ... 647s Unpacking libpetsc64-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 647s Selecting previously unselected package libslepc64-real3.21-dev. 647s Preparing to unpack .../341-libslepc64-real3.21-dev_3.21.2+dfsg1-2_amd64.deb ... 647s Unpacking libslepc64-real3.21-dev (3.21.2+dfsg1-2) ... 647s Selecting previously unselected package libdolfin64-dev:amd64. 647s Preparing to unpack .../342-libdolfin64-dev_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 647s Unpacking libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 647s Selecting previously unselected package libexpat1-dev:amd64. 647s Preparing to unpack .../343-libexpat1-dev_2.6.4-1_amd64.deb ... 647s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 647s Selecting previously unselected package libjs-underscore. 647s Preparing to unpack .../344-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 647s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 647s Selecting previously unselected package libjs-sphinxdoc. 647s Preparing to unpack .../345-libjs-sphinxdoc_7.4.7-4_all.deb ... 647s Unpacking libjs-sphinxdoc (7.4.7-4) ... 647s Selecting previously unselected package libjson-perl. 647s Preparing to unpack .../346-libjson-perl_4.10000-1_all.deb ... 647s Unpacking libjson-perl (4.10000-1) ... 647s Selecting previously unselected package libpetsc-real-dev. 647s Preparing to unpack .../347-libpetsc-real-dev_3.21.6+dfsg1-2ubuntu2_all.deb ... 647s Unpacking libpetsc-real-dev (3.21.6+dfsg1-2ubuntu2) ... 647s Selecting previously unselected package libpetsc64-real-dev. 647s Preparing to unpack .../348-libpetsc64-real-dev_3.21.6+dfsg1-2ubuntu2_all.deb ... 647s Unpacking libpetsc64-real-dev (3.21.6+dfsg1-2ubuntu2) ... 647s Selecting previously unselected package libpython3.12-dev:amd64. 647s Preparing to unpack .../349-libpython3.12-dev_3.12.7-3_amd64.deb ... 647s Unpacking libpython3.12-dev:amd64 (3.12.7-3) ... 647s Selecting previously unselected package libpython3-dev:amd64. 647s Preparing to unpack .../350-libpython3-dev_3.12.7-1_amd64.deb ... 647s Unpacking libpython3-dev:amd64 (3.12.7-1) ... 647s Selecting previously unselected package libpython3.13-stdlib:amd64. 647s Preparing to unpack .../351-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 647s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 647s Selecting previously unselected package libpython3.13:amd64. 647s Preparing to unpack .../352-libpython3.13_3.13.0-2_amd64.deb ... 647s Unpacking libpython3.13:amd64 (3.13.0-2) ... 647s Selecting previously unselected package libpython3.13-dev:amd64. 647s Preparing to unpack .../353-libpython3.13-dev_3.13.0-2_amd64.deb ... 647s Unpacking libpython3.13-dev:amd64 (3.13.0-2) ... 647s Selecting previously unselected package libpython3-all-dev:amd64. 647s Preparing to unpack .../354-libpython3-all-dev_3.12.7-1_amd64.deb ... 647s Unpacking libpython3-all-dev:amd64 (3.12.7-1) ... 647s Selecting previously unselected package petsc64-dev. 647s Preparing to unpack .../355-petsc64-dev_3.21.6+dfsg1-2ubuntu2_all.deb ... 647s Unpacking petsc64-dev (3.21.6+dfsg1-2ubuntu2) ... 647s Selecting previously unselected package pybind11-dev. 647s Preparing to unpack .../356-pybind11-dev_2.13.6-1_all.deb ... 647s Unpacking pybind11-dev (2.13.6-1) ... 647s Selecting previously unselected package sphinx-common. 648s Preparing to unpack .../357-sphinx-common_7.4.7-4_all.deb ... 648s Unpacking sphinx-common (7.4.7-4) ... 648s Selecting previously unselected package python-petsc4py-doc. 648s Preparing to unpack .../358-python-petsc4py-doc_3.21.6-2ubuntu2_all.deb ... 648s Unpacking python-petsc4py-doc (3.21.6-2ubuntu2) ... 648s Selecting previously unselected package python3.13. 648s Preparing to unpack .../359-python3.13_3.13.0-2_amd64.deb ... 648s Unpacking python3.13 (3.13.0-2) ... 648s Selecting previously unselected package python3-all. 648s Preparing to unpack .../360-python3-all_3.12.7-1_amd64.deb ... 648s Unpacking python3-all (3.12.7-1) ... 648s Selecting previously unselected package python3.12-dev. 648s Preparing to unpack .../361-python3.12-dev_3.12.7-3_amd64.deb ... 648s Unpacking python3.12-dev (3.12.7-3) ... 648s Selecting previously unselected package python3-dev. 648s Preparing to unpack .../362-python3-dev_3.12.7-1_amd64.deb ... 648s Unpacking python3-dev (3.12.7-1) ... 648s Selecting previously unselected package python3.13-dev. 648s Preparing to unpack .../363-python3.13-dev_3.13.0-2_amd64.deb ... 648s Unpacking python3.13-dev (3.13.0-2) ... 648s Selecting previously unselected package python3-all-dev. 648s Preparing to unpack .../364-python3-all-dev_3.12.7-1_amd64.deb ... 648s Unpacking python3-all-dev (3.12.7-1) ... 648s Selecting previously unselected package python3-defusedxml. 648s Preparing to unpack .../365-python3-defusedxml_0.7.1-2_all.deb ... 648s Unpacking python3-defusedxml (0.7.1-2) ... 648s Selecting previously unselected package python3-distlib. 648s Preparing to unpack .../366-python3-distlib_0.3.9-1_all.deb ... 648s Unpacking python3-distlib (0.3.9-1) ... 648s Selecting previously unselected package python3-roman. 648s Preparing to unpack .../367-python3-roman_4.2-1_all.deb ... 648s Unpacking python3-roman (4.2-1) ... 648s Selecting previously unselected package python3-docutils. 648s Preparing to unpack .../368-python3-docutils_0.21.2+dfsg-2_all.deb ... 648s Unpacking python3-docutils (0.21.2+dfsg-2) ... 648s Selecting previously unselected package swig. 648s Preparing to unpack .../369-swig_4.2.1-1_amd64.deb ... 648s Unpacking swig (4.2.1-1) ... 648s Selecting previously unselected package python3-petsc4py-real3.21. 648s Preparing to unpack .../370-python3-petsc4py-real3.21_3.21.6-2ubuntu2_amd64.deb ... 648s Unpacking python3-petsc4py-real3.21 (3.21.6-2ubuntu2) ... 648s Selecting previously unselected package python3-petsc4py-real. 648s Preparing to unpack .../371-python3-petsc4py-real_3.21.6-2ubuntu2_all.deb ... 648s Unpacking python3-petsc4py-real (3.21.6-2ubuntu2) ... 648s Selecting previously unselected package python3-slepc4py-real3.21. 648s Preparing to unpack .../372-python3-slepc4py-real3.21_3.21.2-1ubuntu2_amd64.deb ... 648s Unpacking python3-slepc4py-real3.21 (3.21.2-1ubuntu2) ... 648s Selecting previously unselected package python3-slepc4py-real. 648s Preparing to unpack .../373-python3-slepc4py-real_3.21.2-1ubuntu2_all.deb ... 648s Unpacking python3-slepc4py-real (3.21.2-1ubuntu2) ... 648s Selecting previously unselected package python3-dolfin-real. 648s Preparing to unpack .../374-python3-dolfin-real_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 648s Unpacking python3-dolfin-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 648s Selecting previously unselected package python3-petsc4py-64-real3.21. 648s Preparing to unpack .../375-python3-petsc4py-64-real3.21_3.21.6-2ubuntu2_amd64.deb ... 648s Unpacking python3-petsc4py-64-real3.21 (3.21.6-2ubuntu2) ... 648s Selecting previously unselected package python3-petsc4py-64-real. 648s Preparing to unpack .../376-python3-petsc4py-64-real_3.21.6-2ubuntu2_all.deb ... 648s Unpacking python3-petsc4py-64-real (3.21.6-2ubuntu2) ... 648s Selecting previously unselected package python3-slepc4py-64-real3.21. 648s Preparing to unpack .../377-python3-slepc4py-64-real3.21_3.21.2-1ubuntu2_amd64.deb ... 648s Unpacking python3-slepc4py-64-real3.21 (3.21.2-1ubuntu2) ... 648s Selecting previously unselected package python3-slepc4py-64-real. 648s Preparing to unpack .../378-python3-slepc4py-64-real_3.21.2-1ubuntu2_all.deb ... 648s Unpacking python3-slepc4py-64-real (3.21.2-1ubuntu2) ... 649s Selecting previously unselected package python3-pkgconfig. 649s Preparing to unpack .../379-python3-pkgconfig_1.5.5-2_all.deb ... 649s Unpacking python3-pkgconfig (1.5.5-2) ... 649s Selecting previously unselected package python3-pybind11. 649s Preparing to unpack .../380-python3-pybind11_2.13.6-1_all.deb ... 649s Unpacking python3-pybind11 (2.13.6-1) ... 649s Selecting previously unselected package python3-dolfin64-real. 649s Preparing to unpack .../381-python3-dolfin64-real_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 649s Unpacking python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 649s Selecting previously unselected package python3-filelock. 649s Preparing to unpack .../382-python3-filelock_3.16.1-1_all.deb ... 649s Unpacking python3-filelock (3.16.1-1) ... 649s Selecting previously unselected package python3-imagesize. 649s Preparing to unpack .../383-python3-imagesize_1.4.1-1_all.deb ... 649s Unpacking python3-imagesize (1.4.1-1) ... 649s Selecting previously unselected package python3-iniconfig. 649s Preparing to unpack .../384-python3-iniconfig_1.1.1-2_all.deb ... 649s Unpacking python3-iniconfig (1.1.1-2) ... 649s Selecting previously unselected package python3-packaging. 649s Preparing to unpack .../385-python3-packaging_24.1-1_all.deb ... 649s Unpacking python3-packaging (24.1-1) ... 649s Selecting previously unselected package python3-wheel. 649s Preparing to unpack .../386-python3-wheel_0.45.0-1_all.deb ... 649s Unpacking python3-wheel (0.45.0-1) ... 649s Selecting previously unselected package python3-pip. 649s Preparing to unpack .../387-python3-pip_24.2+dfsg-1ubuntu0.1_all.deb ... 649s Unpacking python3-pip (24.2+dfsg-1ubuntu0.1) ... 649s Selecting previously unselected package python3-pip-whl. 649s Preparing to unpack .../388-python3-pip-whl_24.2+dfsg-1ubuntu0.1_all.deb ... 649s Unpacking python3-pip-whl (24.2+dfsg-1ubuntu0.1) ... 649s Selecting previously unselected package python3-platformdirs. 649s Preparing to unpack .../389-python3-platformdirs_4.3.6-1_all.deb ... 649s Unpacking python3-platformdirs (4.3.6-1) ... 649s Selecting previously unselected package python3-pluggy. 649s Preparing to unpack .../390-python3-pluggy_1.5.0-1_all.deb ... 649s Unpacking python3-pluggy (1.5.0-1) ... 649s Selecting previously unselected package python3-ply. 649s Preparing to unpack .../391-python3-ply_3.11-7_all.deb ... 649s Unpacking python3-ply (3.11-7) ... 649s Selecting previously unselected package python3-pusimp. 649s Preparing to unpack .../392-python3-pusimp_0.1.1-1_all.deb ... 649s Unpacking python3-pusimp (0.1.1-1) ... 649s Selecting previously unselected package python3-pytest. 649s Preparing to unpack .../393-python3-pytest_8.3.3-1_all.deb ... 649s Unpacking python3-pytest (8.3.3-1) ... 649s Selecting previously unselected package python3-setuptools-whl. 649s Preparing to unpack .../394-python3-setuptools-whl_75.2.0-1_all.deb ... 649s Unpacking python3-setuptools-whl (75.2.0-1) ... 649s Selecting previously unselected package python3-six. 649s Preparing to unpack .../395-python3-six_1.16.0-7_all.deb ... 649s Unpacking python3-six (1.16.0-7) ... 649s Selecting previously unselected package python3-snowballstemmer. 649s Preparing to unpack .../396-python3-snowballstemmer_2.2.0-4build1_all.deb ... 649s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 649s Selecting previously unselected package python3-alabaster. 649s Preparing to unpack .../397-python3-alabaster_0.7.16-0.1_all.deb ... 649s Unpacking python3-alabaster (0.7.16-0.1) ... 649s Selecting previously unselected package python3-sphinx. 649s Preparing to unpack .../398-python3-sphinx_7.4.7-4_all.deb ... 649s Unpacking python3-sphinx (7.4.7-4) ... 649s Selecting previously unselected package sphinx-rtd-theme-common. 649s Preparing to unpack .../399-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 649s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 649s Selecting previously unselected package python3-sphinxcontrib.jquery. 649s Preparing to unpack .../400-python3-sphinxcontrib.jquery_4.1-5_all.deb ... 649s Unpacking python3-sphinxcontrib.jquery (4.1-5) ... 649s Selecting previously unselected package python3-sphinx-rtd-theme. 649s Preparing to unpack .../401-python3-sphinx-rtd-theme_3.0.1+dfsg-1_all.deb ... 649s Unpacking python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 649s Selecting previously unselected package python3-wheel-whl. 649s Preparing to unpack .../402-python3-wheel-whl_0.45.0-1_all.deb ... 649s Unpacking python3-wheel-whl (0.45.0-1) ... 649s Selecting previously unselected package python3-virtualenv. 649s Preparing to unpack .../403-python3-virtualenv_20.27.0+ds-1_all.deb ... 649s Unpacking python3-virtualenv (20.27.0+ds-1) ... 649s Selecting previously unselected package slepc64-dev. 649s Preparing to unpack .../404-slepc64-dev_3.21.2+dfsg1-2_amd64.deb ... 649s Unpacking slepc64-dev (3.21.2+dfsg1-2) ... 649s Selecting previously unselected package python3-petsc4py. 649s Preparing to unpack .../405-python3-petsc4py_3.21.6-2ubuntu2_all.deb ... 649s Unpacking python3-petsc4py (3.21.6-2ubuntu2) ... 649s Selecting previously unselected package python3-slepc4py. 649s Preparing to unpack .../406-python3-slepc4py_3.21.2-1ubuntu2_all.deb ... 649s Unpacking python3-slepc4py (3.21.2-1ubuntu2) ... 650s Selecting previously unselected package python3-dolfin. 650s Preparing to unpack .../407-python3-dolfin_2019.2.0~legacy20240219.1c52e83-10ubuntu2_amd64.deb ... 650s Unpacking python3-dolfin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 650s Selecting previously unselected package dolfin-doc. 650s Preparing to unpack .../408-dolfin-doc_2019.2.0~legacy20240219.1c52e83-10ubuntu2_all.deb ... 650s Unpacking dolfin-doc (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 650s Selecting previously unselected package dolfin-bin. 650s Preparing to unpack .../409-dolfin-bin_2019.2.0~legacy20240219.1c52e83-10ubuntu2_all.deb ... 650s Unpacking dolfin-bin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 650s Selecting previously unselected package petsc-dev. 650s Preparing to unpack .../410-petsc-dev_3.21.6+dfsg1-2ubuntu2_all.deb ... 650s Unpacking petsc-dev (3.21.6+dfsg1-2ubuntu2) ... 650s Selecting previously unselected package slepc-dev. 650s Preparing to unpack .../411-slepc-dev_3.21.2+dfsg1-2_amd64.deb ... 650s Unpacking slepc-dev (3.21.2+dfsg1-2) ... 650s Selecting previously unselected package libjs-modernizr. 650s Preparing to unpack .../412-libjs-modernizr_3.13.0-0.1_all.deb ... 650s Unpacking libjs-modernizr (3.13.0-0.1) ... 650s Selecting previously unselected package autopkgtest-satdep. 650s Preparing to unpack .../413-4-autopkgtest-satdep.deb ... 650s Unpacking autopkgtest-satdep (0) ... 650s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 650s Setting up libgnutls-openssl27t64:amd64 (3.8.8-2ubuntu1) ... 650s Setting up libboost-program-options1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 650s Setting up libpixman-1-0:amd64 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(1:7.8.3+dfsg-2) ... 651s Setting up xtrans-dev (1.4.0-1) ... 651s Setting up autotools-dev (20220109.1) ... 651s Setting up libblas3:amd64 (3.12.0-3build2) ... 651s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 651s Setting up libunbound8:amd64 (1.20.0-1ubuntu2.1) ... 651s Setting up libpkgconf3:amd64 (1.8.1-4) ... 651s Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 651s Setting up libmunge2:amd64 (0.5.15-4build1) ... 651s Setting up libexpat1-dev:amd64 (2.6.4-1) ... 651s Setting up libgnutls-dane0t64:amd64 (3.8.8-2ubuntu1) ... 651s Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-3.2ubuntu3) ... 651s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 651s Setting up libjsoncpp26:amd64 (1.9.6-2) ... 651s Setting up libpathplan4:amd64 (2.42.4-2build3) ... 651s Setting up libann0 (1.1.2+doc-9build1) ... 651s Setting up libquadmath0:amd64 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Setting up cmake-data (3.31.0-1) ... 651s Setting up librhash1:amd64 (1.4.5-1) ... 651s Setting up libcdt5:amd64 (2.42.4-2build3) ... 651s Setting up libcgraph6:amd64 (2.42.4-2build3) ... 651s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 651s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 651s Setting up libboost-math1.83.0:amd64 (1.83.0-3.2ubuntu3) ... 651s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 652s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 652s Setting up libisl23:amd64 (0.27-1) ... 652s Setting up libde265-0:amd64 (1.0.15-1build4) ... 652s Setting up valgrind (1:3.23.0-0ubuntu2) ... 652s Setting up libtasn1-6-dev:amd64 (4.19.0-3build1) ... 652s Setting up python3-wheel-whl (0.45.0-1) ... 652s Setting up valgrind-mpi (1:3.23.0-0ubuntu2) ... 652s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 652s Setting up libicu-dev:amd64 (74.2-1ubuntu4) ... 652s Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 652s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 652s Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 652s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 652s Setting up libbrotli-dev:amd64 (1.1.0-2build3) ... 652s Setting up libfmt10:amd64 (10.1.1+ds1-4) ... 652s Setting up chrpath (0.18-1) ... 652s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 652s Setting up libp11-kit-dev:amd64 (0.25.5-2ubuntu1) ... 652s Setting up libblas-dev:amd64 (3.12.0-3build2) ... 652s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 652s Setting up libsz2:amd64 (1.1.3-1) ... 652s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 652s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 652s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 652s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 652s Setting up libblas64-3:amd64 (3.12.0-3build2) ... 652s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode 652s Setting up libpython3.13:amd64 (3.13.0-2) ... 652s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 652s Setting up automake (1:1.16.5-1.3ubuntu1) ... 652s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 652s Setting up x11proto-dev (2024.1-1) ... 652s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 652s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 652s Setting up libice6:amd64 (2:1.1.1-1) ... 652s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu1) ... 652s Setting up liblapack3:amd64 (3.12.0-3build2) ... 652s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 652s Setting up gettext (0.22.5-2) ... 652s Setting up libarpack2t64:amd64 (3.9.1-1.1ubuntu1) ... 652s Setting up libfftw3-single3:amd64 (3.3.10-2fakesync1) ... 652s Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-2ubuntu7) ... 652s Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ... 652s Setting up libxau-dev:amd64 (1:1.0.11-1) ... 652s Setting up nettle-dev:amd64 (3.10-1) ... 652s Setting up libcurl4t64:amd64 (8.9.1-2ubuntu3) ... 652s Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ... 652s Setting up python3.13 (3.13.0-2) ... 652s Setting up libspex3:amd64 (1:7.8.3+dfsg-2) ... 652s Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ... 652s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 653s Setting up libopenblas64-0-pthread:amd64 (0.3.28+ds-3) ... 653s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode 653s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode 653s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-x86_64-linux-gnu) in auto mode 653s Setting up libaec-dev:amd64 (1.1.3-1) ... 653s Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-2) ... 653s Setting up libfftw3-long3:amd64 (3.3.10-2fakesync1) ... 653s Setting up python3 (3.12.7-1) ... 653s /usr/share/petsc/3.21/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' 653s axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') 653s /usr/share/petsc/3.21/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' 653s axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') 653s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' 653s print("\documentclass{article}") 653s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' 653s print("\centering") 653s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' 653s print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") 653s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' 653s print("\hline") 653s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' 653s print("\end{tabular}") 653s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' 653s print("\end{table}") 653s /usr/share/petsc/3.21/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' 653s print("\end{document}") 653s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 653s Setting up libopenblas64-pthread-dev:amd64 (0.3.28+ds-3) ... 653s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode 653s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode 653s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so (libopenblas64.so-x86_64-linux-gnu) in auto mode 653s Setting up liblapack64-3:amd64 (3.12.0-3build2) ... 653s Setting up python3-distlib (0.3.9-1) ... 653s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 653s Setting up python3-wheel (0.45.0-1) ... 654s Setting up python3-platformdirs (4.3.6-1) ... 654s Setting up libcamd3:amd64 (1:7.8.3+dfsg-2) ... 654s Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ... 654s Setting up pkgconf:amd64 (1.8.1-4) ... 654s Setting up intltool-debian (0.35.0+20060710.6) ... 654s Setting up python3-six (1.16.0-7) ... 654s Setting up libnl-route-3-dev:amd64 (3.7.0-0.3build2) ... 654s Setting up libltdl-dev:amd64 (2.4.7-8) ... 654s Setting up libthai0:amd64 (0.1.29-2build1) ... 654s Setting up libxdmcp-dev:amd64 (1:1.1.3-0ubuntu6) ... 654s Setting up python3-roman (4.2-1) ... 654s Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2build1) ... 654s Setting up doxygen (1.9.8+ds-2ubuntu2) ... 654s Setting up python3-packaging (24.1-1) ... 654s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 654s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 654s Setting up python3-snowballstemmer (2.2.0-4build1) ... 655s Setting up librbio4:amd64 (1:7.8.3+dfsg-2) ... 655s Setting up python3-jaraco.text (4.0.0-1) ... 655s Setting up libraqm0:amd64 (0.10.1-1build1) ... 655s Setting up libpython3.13-dev:amd64 (3.13.0-2) ... 655s Setting up libfftw3-quad3:amd64 (3.3.10-2fakesync1) ... 655s Setting up opencl-clhpp-headers (3.0~2024.05.08-1ubuntu1) ... 655s Setting up libevent-dev (2.1.12-stable-10) ... 655s Setting up liblapack-dev:amd64 (3.12.0-3build2) ... 655s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 655s Setting up libeigen3-dev (3.4.0-4build1) ... 655s Setting up python3.12-dev (3.12.7-3) ... 655s Setting up pkg-config:amd64 (1.8.1-4) ... 655s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 655s Setting up libpmix2t64:amd64 (5.0.3-2) ... 655s Setting up python3-pip (24.2+dfsg-1ubuntu0.1) ... 656s Setting up libssh2-1-dev:amd64 (1.11.1-1) ... 656s Setting up libjs-sphinxdoc (7.4.7-4) ... 656s Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1build1) ... 656s Setting up cpp-14 (14.2.0-8ubuntu1) ... 656s Setting up python3-pluggy (1.5.0-1) ... 657s Setting up libccolamd3:amd64 (1:7.8.3+dfsg-2) ... 657s Setting up dh-strip-nondeterminism (1.14.0-1) ... 657s Setting up libopenblas64-0:amd64 (0.3.28+ds-3) ... 657s Setting up libgvpr2:amd64 (2.42.4-2build3) ... 657s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 657s Setting up xml-core (0.19) ... 657s Setting up cmake (3.31.0-1) ... 657s Setting up libhwloc-dev:amd64 (2.11.2-1) ... 657s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 657s Setting up curl (8.9.1-2ubuntu3) ... 657s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 657s Setting up python3-pkgconfig (1.5.5-2) ... 657s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 657s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 657s Setting up python3-mpmath (1.3.0-1) ... 658s Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ... 658s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 658s Setting up libsm6:amd64 (2:1.2.4-1) ... 658s Setting up python3-pusimp (0.1.1-1) ... 658s Setting up libpmix-dev:amd64 (5.0.3-2) ... 658s Setting up libhsakmt1:amd64 (6.1.2+ds-1) ... 658s Setting up python3-imagesize (1.4.1-1) ... 658s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 658s Setting up python3-pkg-resources (75.2.0-1) ... 658s Setting up libgfortran-14-dev:amd64 (14.2.0-8ubuntu1) ... 658s Setting up libgnutls28-dev:amd64 (3.8.8-2ubuntu1) ... 658s Setting up python3-iniconfig (1.1.1-2) ... 658s Setting up python3-sympy (1.13.3-1) ... 667s Setting up libnghttp2-dev:amd64 (1.64.0-1) ... 668s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 670s Regenerating fonts cache... done. 670s Setting up libcholmod5:amd64 (1:7.8.3+dfsg-2) ... 670s Setting up libboost1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 670s Setting up python3-filelock (3.16.1-1) ... 670s Setting up libarpack2-dev:amd64 (3.9.1-1.1ubuntu1) ... 670s Setting up libpython3-dev:amd64 (3.12.7-1) ... 670s Setting up libxcb1-dev:amd64 (1.17.0-2) ... 670s Setting up libopenblas64-dev:amd64 (0.3.28+ds-3) ... 670s Setting up libboost-chrono1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 670s Setting up python3-setuptools (75.2.0-1) ... 671s Setting up libboost-math1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 671s Setting up libspqr4:amd64 (1:7.8.3+dfsg-2) ... 671s Setting up libboost-chrono-dev:amd64 (1.83.0.2ubuntu1) ... 671s Setting up libfftw3-bin (3.3.10-2fakesync1) ... 671s Setting up python3-defusedxml (0.7.1-2) ... 671s Setting up python3.13-dev (3.13.0-2) ... 671s Setting up python3-pytest (8.3.3-1) ... 671s Setting up python3-alabaster (0.7.16-0.1) ... 672s Setting up libboost-math-dev:amd64 (1.83.0.2ubuntu1) ... 672s Setting up po-debconf (1.0.21+nmu1) ... 672s Setting up python3-ply (3.11-7) ... 672s Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... 672s Setting up libboost-program-options1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 672s Setting up libboost-serialization1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 672s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 672s Setting up libx11-dev:amd64 (2:1.8.10-2) ... 672s Setting up python3-virtualenv (20.27.0+ds-1) ... 672s Setting up python3-all (3.12.7-1) ... 672s Setting up libibverbs-dev:amd64 (52.0-2ubuntu1) ... 672s Setting up pybind11-dev (2.13.6-1) ... 672s Setting up libcairo2:amd64 (1.18.2-2) ... 672s Setting up libboost-timer1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 672s Setting up libboost-program-options-dev:amd64 (1.83.0.2ubuntu1) ... 672s Setting up libklu2:amd64 (1:7.8.3+dfsg-2) ... 672s Setting up libpython3-all-dev:amd64 (3.12.7-1) ... 672s Setting up libboost-date-time1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 672s Setting up sphinx-common (7.4.7-4) ... 672s Setting up python3-dev (3.12.7-1) ... 672s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 672s Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... 672s Setting up libboost-regex1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 672s Setting up libboost-serialization-dev:amd64 (1.83.0.2ubuntu1) ... 672s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 675s Setting up libboost-atomic1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 675s Setting up libumfpack6:amd64 (1:7.8.3+dfsg-2) ... 675s Setting up python3-ufl-legacy (1:2022.3.0-3) ... 675s Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ... 675s Setting up cpp (4:14.1.0-2ubuntu1) ... 675s Setting up libboost-dev:amd64 (1.83.0.2ubuntu1) ... 675s Setting up libboost-system1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 675s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 675s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... 675s Setting up libfftw3-dev:amd64 (3.3.10-2fakesync1) ... 675s Setting up libboost-timer-dev:amd64 (1.83.0.2ubuntu1) ... 675s Setting up python3-pybind11 (2.13.6-1) ... 675s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... 675s Setting up dh-python (6.20241024) ... 675s Setting up python3-all-dev (3.12.7-1) ... 675s Setting up libboost-thread1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 675s Setting up python3-fiat (2019.2.0~git20210419.7d418fa-5) ... 676s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 676s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 676s Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 676s Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-3.2ubuntu3) ... 676s Setting up libxaw7:amd64 (2:1.0.16-1) ... 676s Setting up libboost-iostreams-dev:amd64 (1.83.0.2ubuntu1) ... 676s Setting up python-petsc4py-doc (3.21.6-2ubuntu2) ... 676s Setting up libparu1:amd64 (1:7.8.3+dfsg-2) ... 676s Setting up gcc-14 (14.2.0-8ubuntu1) ... 676s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 676s Setting up libamdhip64-5 (5.7.1-5) ... 676s Setting up libcurl4-openssl-dev:amd64 (8.9.1-2ubuntu3) ... 676s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 676s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 676s Setting up g++-14 (14.2.0-8ubuntu1) ... 676s Setting up gfortran-14 (14.2.0-8ubuntu1) ... 676s Setting up libboost-filesystem-dev:amd64 (1.83.0.2ubuntu1) ... 676s Setting up libboost-thread-dev:amd64 (1.83.0.2ubuntu1) ... 676s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 676s Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ... 676s Setting up libtool (2.4.7-8) ... 676s Setting up gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 676s Setting up gcc (4:14.1.0-2ubuntu1) ... 676s Setting up dh-autoreconf (20) ... 676s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 676s Setting up g++ (4:14.1.0-2ubuntu1) ... 676s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 676s Setting up libparpack2t64:amd64 (3.9.1-1.1ubuntu1) ... 676s Setting up build-essential (12.10ubuntu1) ... 676s Setting up libboost-mpi1.83.0 (1.83.0-3.2ubuntu3) ... 676s Setting up openmpi-bin (5.0.5-6) ... 676s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 676s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 676s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 676s Setting up libptscotch-7.0:amd64 (7.0.5-1ubuntu1) ... 676s Setting up mpi-default-bin (1.17) ... 676s Setting up debhelper (13.20ubuntu1) ... 676s Setting up libcombblas2.0.0t64:amd64 (2.0.0-6) ... 676s Setting up libfftw3-mpi3:amd64 (3.3.10-2fakesync1) ... 676s Setting up python3-mpi4py (4.0.0-9) ... 676s Setting up gfortran (4:14.1.0-2ubuntu1) ... 676s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 676s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 676s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 676s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 676s Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 676s Setting up libhdf5-openmpi-fortran-102t64:amd64 (1.10.10+repack-4ubuntu3) ... 676s Setting up libhdf5-openmpi-cpp-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 676s Setting up libopenmpi-dev:amd64 (5.0.5-6) ... 676s update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode 676s update-alternatives: warning: skip creation of /usr/lib/x86_64-linux-gnu/libmpi.so because associated file /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (of link group mpi-x86_64-linux-gnu) doesn't exist 676s Setting up libscalapack-openmpi2.2:amd64 (2.2.1-3.1ubuntu2) ... 676s Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ... 676s Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5) ... 676s Setting up python3-ffc (2019.2.0~legacy20230509.35df986-3) ... 676s Setting up libfftw3-mpi-dev:amd64 (3.3.10-2fakesync1) ... 676s Setting up libhdf5-openmpi-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 676s Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5) ... 676s Setting up libhdf5-openmpi-hl-fortran-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 676s Setting up libmumps-64pord-5.7:amd64 (5.7.3-3) ... 676s Setting up libmumps-5.7:amd64 (5.7.3-3) ... 676s Setting up libhypre-2.31.0:amd64 (2.31.0-1exp2) ... 676s Setting up libhypre64m-2.31.0:amd64 (2.31.0-1exp2) ... 677s Setting up libscalapack-openmpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 677s Setting up mpi-default-dev (1.17) ... 677s Setting up libhdf5-openmpi-hl-cpp-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 677s Setting up libhypre64m-dev:amd64 (2.31.0-1exp2) ... 677s Setting up libscalapack-mpi-dev:amd64 (2.2.1-3.1ubuntu2) ... 677s Setting up libhdf5-openmpi-dev (1.10.10+repack-4ubuntu3) ... 677s update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 677s update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 677s Setting up libmumps64-dev:amd64 (5.7.3-3) ... 677s Setting up libmumps-dev:amd64 (5.7.3-3) ... 677s Setting up libscotch-dev (7.0.5-1ubuntu1) ... 677s Setting up libparpack2-dev:amd64 (3.9.1-1.1ubuntu1) ... 677s Setting up libpetsc-real3.21:amd64 (3.21.6+dfsg1-2ubuntu2) ... 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.21 (libpetsc.so.3.21) in auto mode 677s Setting up libhypre-dev:amd64 (2.31.0-1exp2) ... 677s Setting up libptscotch-dev (7.0.5-1ubuntu1) ... 677s Setting up libpetsc64-real3.21:amd64 (3.21.6+dfsg1-2ubuntu2) ... 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc64.so.3.21 (libpetsc64.so.3.21) in auto mode 677s Setting up libboost-mpi1.83-dev (1.83.0-3.2ubuntu3) ... 677s Setting up libboost-mpi-dev (1.83.0.2ubuntu1) ... 677s Setting up libhdf5-mpi-dev (1.10.10+repack-4ubuntu3) ... 677s Setting up python3-petsc4py-64-real3.21 (3.21.6-2ubuntu2) ... 677s Setting up libslepc64-real3.21 (3.21.2+dfsg1-2) ... 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64.so.3.21 (libslepc64.so.3.21) in auto mode 677s Setting up python3-petsc4py (3.21.6-2ubuntu2) ... 677s Setting up libslepc-real3.21 (3.21.2+dfsg1-2) ... 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.21 (libslepc.so.3.21) in auto mode 677s Setting up python3-petsc4py-real3.21 (3.21.6-2ubuntu2) ... 677s Setting up python3-petsc4py-real (3.21.6-2ubuntu2) ... 677s Setting up libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up libpetsc3.21-dev-common (3.21.6+dfsg1-2ubuntu2) ... 677s Setting up python3-slepc4py-real3.21 (3.21.2-1ubuntu2) ... 677s Setting up python3-petsc4py-64-real (3.21.6-2ubuntu2) ... 677s Setting up libpetsc64-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 677s update-alternatives: using /usr/lib/petscdir/petsc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode 677s update-alternatives: using /usr/lib/petscdir/petsc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/petscdir/64-3.21 (petsc64-3.21) in auto mode 677s Setting up libdolfin64-2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up python3-slepc4py-64-real3.21 (3.21.2-1ubuntu2) ... 677s Setting up libpetsc-real3.21-dev:amd64 (3.21.6+dfsg1-2ubuntu2) ... 677s update-alternatives: error: no alternatives for petsc 677s update-alternatives: using /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.21.6 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode 677s update-alternatives: using /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.21 (petsc3.21) in auto mode 677s Setting up libpetsc-real-dev (3.21.6+dfsg1-2ubuntu2) ... 677s Setting up python3-slepc4py (3.21.2-1ubuntu2) ... 677s Setting up python3-slepc4py-real (3.21.2-1ubuntu2) ... 677s Setting up python3-slepc4py-64-real (3.21.2-1ubuntu2) ... 677s Setting up libpetsc64-real-dev (3.21.6+dfsg1-2ubuntu2) ... 677s Setting up petsc64-dev (3.21.6+dfsg1-2ubuntu2) ... 677s Setting up libslepc-real3.21-dev (3.21.2+dfsg1-2) ... 677s update-alternatives: error: no alternatives for slepc 677s update-alternatives: using /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode 677s update-alternatives: using /usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.21 (slepc3.21) in auto mode 677s Setting up libslepc64-real3.21-dev (3.21.2+dfsg1-2) ... 677s update-alternatives: using /usr/lib/slepcdir/slepc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode 677s update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.21.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode 677s update-alternatives: using /usr/lib/slepcdir/slepc64-3.21/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.21 (slepc64-3.21) in auto mode 677s Setting up petsc-dev (3.21.6+dfsg1-2ubuntu2) ... 677s Setting up slepc-dev (3.21.2+dfsg1-2) ... 677s Setting up libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up slepc64-dev (3.21.2+dfsg1-2) ... 677s Setting up libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up python3-dolfin64-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up python3-dolfin-real (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up python3-dolfin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 677s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 677s x = list(map(float, re.split("[\s,]+", m.group(1)))) 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 677s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 677s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 677s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' 677s _error("Missing data, unable to convert \n\ Did you use version 2.0 of the gmsh file format?") 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' 677s x = list(map(float, re.split("[\s,]+", m.group(1)))) 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' 677s dim = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' 677s num_vertices = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 677s /usr/lib/python3/dist-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' 677s num_cells = int(re.match(".*\s=\s(\d+)\s;",line).group(1)) 677s Setting up dolfin-doc (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up dolfin-bin (2019.2.0~legacy20240219.1c52e83-10ubuntu2) ... 677s Setting up libheif-plugin-aomdec:amd64 (1.19.3-1) ... 677s Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ... 677s Setting up libheif1:amd64 (1.19.3-1) ... 677s Setting up libgd3:amd64 (2.3.3-12ubuntu3) ... 677s Setting up libgvc6 (2.42.4-2build3) ... 677s Setting up graphviz (2.42.4-2build3) ... 677s Processing triggers for libc-bin (2.40-1ubuntu3) ... 677s Processing triggers for systemd (256.5-2ubuntu4) ... 677s Processing triggers for man-db (2.13.0-1) ... 679s Processing triggers for install-info (7.1.1-1) ... 679s Processing triggers for sgml-base (1.31) ... 679s Setting up docutils-common (0.21.2+dfsg-2) ... 679s Processing triggers for sgml-base (1.31) ... 679s Setting up python3-docutils (0.21.2+dfsg-2) ... 679s Setting up python3-sphinx (7.4.7-4) ... 680s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 681s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ... 681s Setting up autopkgtest-satdep (0) ... 694s (Reading database ... 125743 files and directories currently installed.) 694s Removing autopkgtest-satdep (0) ... 696s autopkgtest [21:00:12]: test test-dolfin-python-pusimp: [----------------------- 696s === python 3.13 pusimp test === 697s ============================= test session starts ============================== 697s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 697s cachedir: .pytest_cache 697s rootdir: /tmp/autopkgtest.8KRSRk/build.52a/src/python 697s plugins: typeguard-4.4.1 698s collecting ... collected 10 items 698s 699s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_without_local_packages FAILED 814s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] Package dolfin did fail to import with error: 814s Importing dolfin was not successful. 814s stdout contains 814s stderr contains Traceback (most recent call last): 814s File "", line 1, in 814s import dolfin 814s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 814s pusimp.prevent_user_site_imports( 814s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 814s "dolfin", "apt", "https://fenicsproject.discourse.group/", 814s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 814s ...<8 lines>... 814s pip_uninstall_call 814s ^^^^^^^^^^^^^^^^^^ 814s ) 814s ^ 814s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 814s raise ImportError(import_error) 814s ImportError: pusimp has detected the following problems with dolfin dependencies: 814s 1) Dependencies imported from a local path rather than from the path provided by apt: 814s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpuwzawksf/venv/lib/python3.13/site-packages/ufl_legacy/__init__.py. 814s 814s pusimp suggests to apply all of the following fixes: 814s 1) To uninstall local dependencies: 814s * run '/tmp/tmpuwzawksf/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpuwzawksf/venv/lib/python3.13/site-packages/ufl_legacy. 814s 814s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 814s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 814s FAILED 822s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] Package dolfin did fail to import with error: 822s Importing dolfin was not successful. 822s stdout contains 822s stderr contains Traceback (most recent call last): 822s File "", line 1, in 822s import dolfin 822s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 822s pusimp.prevent_user_site_imports( 822s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 822s "dolfin", "apt", "https://fenicsproject.discourse.group/", 822s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 822s ...<8 lines>... 822s pip_uninstall_call 822s ^^^^^^^^^^^^^^^^^^ 822s ) 822s ^ 822s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 822s raise ImportError(import_error) 822s ImportError: pusimp has detected the following problems with dolfin dependencies: 822s 1) Dependencies imported from a local path rather than from the path provided by apt: 822s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmpuy8ykqja/venv/lib/python3.13/site-packages/ufl/__init__.py. 822s 822s pusimp suggests to apply all of the following fixes: 822s 1) To uninstall local dependencies: 822s * run '/tmp/tmpuy8ykqja/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpuy8ykqja/venv/lib/python3.13/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 822s 822s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 822s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 822s FAILED 841s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] Package dolfin did fail to import with error: 841s Importing dolfin was not successful. 841s stdout contains 841s stderr contains Traceback (most recent call last): 841s File "", line 1, in 841s import dolfin 841s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 841s pusimp.prevent_user_site_imports( 841s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 841s "dolfin", "apt", "https://fenicsproject.discourse.group/", 841s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 841s ...<8 lines>... 841s pip_uninstall_call 841s ^^^^^^^^^^^^^^^^^^ 841s ) 841s ^ 841s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 841s raise ImportError(import_error) 841s ImportError: pusimp has detected the following problems with dolfin dependencies: 841s 1) Dependencies imported from a local path rather than from the path provided by apt: 841s * FIAT was imported from a local path: expected in /usr/lib/python3/dist-packages/FIAT/__init__.py, but imported from /tmp/tmpdkslmp1i/venv/lib/python3.13/site-packages/FIAT/__init__.py. 841s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpdkslmp1i/venv/lib/python3.13/site-packages/ufl_legacy/__init__.py. 841s 841s pusimp suggests to apply all of the following fixes: 841s 1) To uninstall local dependencies: 841s * run '/tmp/tmpdkslmp1i/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpdkslmp1i/venv/lib/python3.13/site-packages/FIAT. 841s * run '/tmp/tmpdkslmp1i/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpdkslmp1i/venv/lib/python3.13/site-packages/ufl_legacy. 841s 841s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 841s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 841s FAILED 852s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] Package dolfin did fail to import with error: 852s Importing dolfin was not successful. 852s stdout contains 852s stderr contains Traceback (most recent call last): 852s File "", line 1, in 852s import dolfin 852s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 852s pusimp.prevent_user_site_imports( 852s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 852s "dolfin", "apt", "https://fenicsproject.discourse.group/", 852s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 852s ...<8 lines>... 852s pip_uninstall_call 852s ^^^^^^^^^^^^^^^^^^ 852s ) 852s ^ 852s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 852s raise ImportError(import_error) 852s ImportError: pusimp has detected the following problems with dolfin dependencies: 852s 1) Dependencies imported from a local path rather than from the path provided by apt: 852s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpilpypti5/venv/lib/python3.13/site-packages/ufl_legacy/__init__.py. 852s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmpilpypti5/venv/lib/python3.13/site-packages/ufl/__init__.py. 852s 852s pusimp suggests to apply all of the following fixes: 852s 1) To uninstall local dependencies: 852s * run '/tmp/tmpilpypti5/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpilpypti5/venv/lib/python3.13/site-packages/ufl_legacy. 852s * run '/tmp/tmpilpypti5/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpilpypti5/venv/lib/python3.13/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 852s 852s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 852s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 852s FAILED 859s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] FAILED 865s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] FAILED 868s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name0] Package dolfin did fail to import with error: 868s Importing dolfin was not successful. 868s stdout contains 868s stderr contains Traceback (most recent call last): 868s File "", line 1, in 868s import dolfin 868s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 868s pusimp.prevent_user_site_imports( 868s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 868s "dolfin", "apt", "https://fenicsproject.discourse.group/", 868s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 868s ...<8 lines>... 868s pip_uninstall_call 868s ^^^^^^^^^^^^^^^^^^ 868s ) 868s ^ 868s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 868s raise ImportError(import_error) 868s ImportError: pusimp has detected the following problems with dolfin dependencies: 868s 1) Broken dependencies: 868s * ffc is broken. Error on import was 'ufl_legacy was purposely broken.'. 868s * ufl_legacy is broken. Error on import was 'ufl_legacy was purposely broken.'. 868s 868s pusimp suggests to apply all of the following fixes: 868s 1) To fix broken dependencies: 868s * run '/tmp/tmp5ot9zbss/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmp5ot9zbss/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 868s * run '/tmp/tmp5ot9zbss/venv/bin/python3 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmp5ot9zbss/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 868s 868s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 868s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 868s PASSED 871s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name1] Package dolfin did fail to import with error: 871s Importing dolfin was not successful. 871s stdout contains 871s stderr contains Traceback (most recent call last): 871s File "", line 1, in 871s import dolfin 871s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 871s pusimp.prevent_user_site_imports( 871s ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 871s "dolfin", "apt", "https://fenicsproject.discourse.group/", 871s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 871s ...<8 lines>... 871s pip_uninstall_call 871s ^^^^^^^^^^^^^^^^^^ 871s ) 871s ^ 871s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 871s raise ImportError(import_error) 871s ImportError: pusimp has detected the following problems with dolfin dependencies: 871s 1) Broken dependencies: 871s * ffc is broken. Error on import was 'ffc was purposely broken.'. 871s 871s pusimp suggests to apply all of the following fixes: 871s 1) To fix broken dependencies: 871s * run '/tmp/tmp98o3a9_a/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmp98o3a9_a/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 871s 871s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 871s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 871s PASSED 874s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] FAILED 874s 874s =================================== FAILURES =================================== 874s ______________ test_dolfin_import_success_without_local_packages _______________ 874s 874s def test_dolfin_import_success_without_local_packages() -> None: 874s """Test that dolfin imports correctly without any extra local packages.""" 874s > assert_package_import_success_without_local_packages( 874s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py" 874s ) 874s 874s python/test/debian-only/test_pusimp.py:47: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:202: in assert_package_import_success_without_local_packages 874s assert_package_location(sys.executable, package, package_path) 874s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 874s assert_has_package(executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/usr/bin/python3.13', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] _ 874s 874s dependencies_import_name = ['ufl_legacy'] 874s dependencies_pypi_name = ['fenics-ufl-legacy'] 874s dependencies_extra_error_message = [] 874s 874s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 874s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 874s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 874s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 874s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 874s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 874s ]) 874s def test_dolfin_import_errors_with_local_packages( 874s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 874s dependencies_extra_error_message: typing.List[str] 874s ) -> None: 874s """Test that dolfin fails to import with extra local packages.""" 874s > assert_package_import_errors_with_local_packages( 874s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 874s pip_install_call, pip_uninstall_call 874s ) 874s 874s python/test/debian-only/test_pusimp.py:64: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 874s assert_has_package(virtual_env.executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/tmp/tmpuwzawksf/venv/bin/python3', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] _ 874s 874s dependencies_import_name = ['ufl'], dependencies_pypi_name = ['fenics-ufl'] 874s dependencies_extra_error_message = ['legacy dolfin codes must now import ufl_legacy instead of ufl'] 874s 874s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 874s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 874s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 874s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 874s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 874s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 874s ]) 874s def test_dolfin_import_errors_with_local_packages( 874s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 874s dependencies_extra_error_message: typing.List[str] 874s ) -> None: 874s """Test that dolfin fails to import with extra local packages.""" 874s > assert_package_import_errors_with_local_packages( 874s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 874s pip_install_call, pip_uninstall_call 874s ) 874s 874s python/test/debian-only/test_pusimp.py:64: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 874s assert_has_package(virtual_env.executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/tmp/tmpuy8ykqja/venv/bin/python3', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] _ 874s 874s dependencies_import_name = ['FIAT', 'ufl_legacy'] 874s dependencies_pypi_name = ['fenics-fiat', 'fenics-ufl-legacy'] 874s dependencies_extra_error_message = [] 874s 874s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 874s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 874s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 874s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 874s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 874s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 874s ]) 874s def test_dolfin_import_errors_with_local_packages( 874s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 874s dependencies_extra_error_message: typing.List[str] 874s ) -> None: 874s """Test that dolfin fails to import with extra local packages.""" 874s > assert_package_import_errors_with_local_packages( 874s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 874s pip_install_call, pip_uninstall_call 874s ) 874s 874s python/test/debian-only/test_pusimp.py:64: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 874s assert_has_package(virtual_env.executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/tmp/tmpdkslmp1i/venv/bin/python3', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] _ 874s 874s dependencies_import_name = ['ufl', 'ufl_legacy'] 874s dependencies_pypi_name = ['fenics-ufl', 'fenics-ufl-legacy'] 874s dependencies_extra_error_message = ['legacy dolfin codes must now import ufl_legacy instead of ufl'] 874s 874s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 874s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 874s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 874s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 874s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 874s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 874s ]) 874s def test_dolfin_import_errors_with_local_packages( 874s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 874s dependencies_extra_error_message: typing.List[str] 874s ) -> None: 874s """Test that dolfin fails to import with extra local packages.""" 874s > assert_package_import_errors_with_local_packages( 874s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 874s pip_install_call, pip_uninstall_call 874s ) 874s 874s python/test/debian-only/test_pusimp.py:64: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 874s assert_has_package(virtual_env.executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/tmp/tmpilpypti5/venv/bin/python3', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s _ test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] _ 874s 874s dependencies_import_name = ['ufl_legacy'] 874s dependencies_pypi_name = ['fenics-ufl-legacy'] 874s 874s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 874s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name", [ 874s (["ufl_legacy"], ["fenics-ufl-legacy"]), 874s (["ufl"], ["fenics-ufl"]) 874s ]) 874s def test_dolfin_import_success_with_allowed_local_packages( 874s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str] 874s ) -> None: 874s """Test that dolfin imports correctly even with extra local packages when asked to allow user-site imports.""" 874s > assert_package_import_success_with_allowed_local_packages( 874s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", 874s dependencies_import_name, dependencies_pypi_name, pip_install_call 874s ) 874s 874s python/test/debian-only/test_pusimp.py:79: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:267: in assert_package_import_success_with_allowed_local_packages 874s assert_package_location(virtual_env.executable, package, package_path) 874s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 874s assert_has_package(executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/tmp/tmp202lrgee/venv/bin/python3', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s _ test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] _ 874s 874s dependencies_import_name = ['ufl'], dependencies_pypi_name = ['fenics-ufl'] 874s 874s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 874s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name", [ 874s (["ufl_legacy"], ["fenics-ufl-legacy"]), 874s (["ufl"], ["fenics-ufl"]) 874s ]) 874s def test_dolfin_import_success_with_allowed_local_packages( 874s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str] 874s ) -> None: 874s """Test that dolfin imports correctly even with extra local packages when asked to allow user-site imports.""" 874s > assert_package_import_success_with_allowed_local_packages( 874s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", 874s dependencies_import_name, dependencies_pypi_name, pip_install_call 874s ) 874s 874s python/test/debian-only/test_pusimp.py:79: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:267: in assert_package_import_success_with_allowed_local_packages 874s assert_package_location(virtual_env.executable, package, package_path) 874s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 874s assert_has_package(executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/tmp/tmphsydlurz/venv/bin/python3', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s _ test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] _ 874s 874s dependencies_import_name = ['ufl'] 874s 874s @pytest.mark.parametrize("dependencies_import_name", [ 874s ["ufl"] 874s ]) 874s def test_dolfin_import_success_with_broken_optional_packages(dependencies_import_name: typing.List[str]) -> None: 874s """Test that dolfin fails to import imports correctly when optional packages are broken.""" 874s > assert_package_import_success_with_broken_optional_packages( 874s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", dependencies_import_name, [True] 874s ) 874s 874s python/test/debian-only/test_pusimp.py:99: 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s /usr/lib/python3/dist-packages/pusimp/utils.py:311: in assert_package_import_success_with_broken_optional_packages 874s assert_package_location(virtual_env.executable, package, package_path) 874s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 874s assert_has_package(executable, package) 874s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 874s 874s executable = '/tmp/tmpn3wt5rhu/venv/bin/python3', package = 'dolfin' 874s 874s def assert_has_package(executable: str, package: str) -> None: 874s """Assert that a package is installed. 874s 874s Note that it is not safe to simply import the package in the current pytest environment, 874s since the environment itself might change from one test to the other, but python packages 874s can be imported only once and not unloaded. 874s """ 874s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 874s > assert run_import.returncode == 0, ( 874s f"Importing {package} was not successful.\n" 874s f"stdout contains {run_import.stdout.decode().strip()}\n" 874s f"stderr contains {run_import.stderr.decode().strip()}" 874s ) 874s E AssertionError: Importing dolfin was not successful. 874s E stdout contains ERROR: could not import mpi4py! 874s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s E 874s E The above exception was the direct cause of the following exception: 874s E 874s E Traceback (most recent call last): 874s E File "", line 1, in 874s E import dolfin 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s E SystemAssembler, assemble_local) 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s E from dolfin.fem.form import Form 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s E from dolfin.jit.jit import dolfin_pc, ffc_jit 874s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s E ^^^^^^^^^^^^^^ 874s E RuntimeError: Error when importing mpi4py 874s 874s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 874s =========================== short test summary info ============================ 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_without_local_packages - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] - AssertionError: Importing dolfin was not successful. 874s stdout contains ERROR: could not import mpi4py! 874s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 874s 874s The above exception was the direct cause of the following exception: 874s 874s Traceback (most recent call last): 874s File "", line 1, in 874s import dolfin 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 874s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 874s SystemAssembler, assemble_local) 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 874s from dolfin.fem.form import Form 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 874s from dolfin.jit.jit import dolfin_pc, ffc_jit 874s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 874s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 874s ^^^^^^^^^^^^^^ 874s RuntimeError: Error when importing mpi4py 874s =================== 8 failed, 2 passed in 177.47s (0:02:57) ==================== 874s === python 3.12 pusimp test === 874s ============================= test session starts ============================== 874s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 874s cachedir: .pytest_cache 874s rootdir: /tmp/autopkgtest.8KRSRk/build.52a/src/python 874s plugins: typeguard-4.4.1 875s collecting ... collected 10 items 875s 876s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_without_local_packages FAILED 885s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] Package dolfin did fail to import with error: 885s Importing dolfin was not successful. 885s stdout contains 885s stderr contains Traceback (most recent call last): 885s File "", line 1, in 885s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 885s pusimp.prevent_user_site_imports( 885s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 885s raise ImportError(import_error) 885s ImportError: pusimp has detected the following problems with dolfin dependencies: 885s 1) Dependencies imported from a local path rather than from the path provided by apt: 885s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmpuf6vklj8/venv/lib/python3.12/site-packages/ufl_legacy/__init__.py. 885s 885s pusimp suggests to apply all of the following fixes: 885s 1) To uninstall local dependencies: 885s * run '/tmp/tmpuf6vklj8/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmpuf6vklj8/venv/lib/python3.12/site-packages/ufl_legacy. 885s 885s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 885s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 885s FAILED 893s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] Package dolfin did fail to import with error: 893s Importing dolfin was not successful. 893s stdout contains 893s stderr contains Traceback (most recent call last): 893s File "", line 1, in 893s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 893s pusimp.prevent_user_site_imports( 893s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 893s raise ImportError(import_error) 893s ImportError: pusimp has detected the following problems with dolfin dependencies: 893s 1) Dependencies imported from a local path rather than from the path provided by apt: 893s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmp1edzqlp5/venv/lib/python3.12/site-packages/ufl/__init__.py. 893s 893s pusimp suggests to apply all of the following fixes: 893s 1) To uninstall local dependencies: 893s * run '/tmp/tmp1edzqlp5/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmp1edzqlp5/venv/lib/python3.12/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 893s 893s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 893s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 893s FAILED 910s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] Package dolfin did fail to import with error: 910s Importing dolfin was not successful. 910s stdout contains 910s stderr contains Traceback (most recent call last): 910s File "", line 1, in 910s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 910s pusimp.prevent_user_site_imports( 910s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 910s raise ImportError(import_error) 910s ImportError: pusimp has detected the following problems with dolfin dependencies: 910s 1) Dependencies imported from a local path rather than from the path provided by apt: 910s * FIAT was imported from a local path: expected in /usr/lib/python3/dist-packages/FIAT/__init__.py, but imported from /tmp/tmp_eyca9um/venv/lib/python3.12/site-packages/FIAT/__init__.py. 910s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmp_eyca9um/venv/lib/python3.12/site-packages/ufl_legacy/__init__.py. 910s 910s pusimp suggests to apply all of the following fixes: 910s 1) To uninstall local dependencies: 910s * run '/tmp/tmp_eyca9um/venv/bin/python3 -m pip uninstall --break-system-packages fenics-fiat' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmp_eyca9um/venv/lib/python3.12/site-packages/FIAT. 910s * run '/tmp/tmp_eyca9um/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmp_eyca9um/venv/lib/python3.12/site-packages/ufl_legacy. 910s 910s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 910s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 910s FAILED 921s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] Package dolfin did fail to import with error: 921s Importing dolfin was not successful. 921s stdout contains 921s stderr contains Traceback (most recent call last): 921s File "", line 1, in 921s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 921s pusimp.prevent_user_site_imports( 921s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 921s raise ImportError(import_error) 921s ImportError: pusimp has detected the following problems with dolfin dependencies: 921s 1) Dependencies imported from a local path rather than from the path provided by apt: 921s * ufl_legacy was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl_legacy/__init__.py, but imported from /tmp/tmppghp7qq5/venv/lib/python3.12/site-packages/ufl_legacy/__init__.py. 921s * ufl was imported from a local path: expected in /usr/lib/python3/dist-packages/ufl/__init__.py, but imported from /tmp/tmppghp7qq5/venv/lib/python3.12/site-packages/ufl/__init__.py. 921s 921s pusimp suggests to apply all of the following fixes: 921s 1) To uninstall local dependencies: 921s * run '/tmp/tmppghp7qq5/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmppghp7qq5/venv/lib/python3.12/site-packages/ufl_legacy. 921s * run '/tmp/tmppghp7qq5/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl' in a terminal, and verify that you are prompted to confirm removal of files in /tmp/tmppghp7qq5/venv/lib/python3.12/site-packages/ufl. Be aware that legacy dolfin codes must now import ufl_legacy instead of ufl, see https://fenicsproject.discourse.group/t/announcement-ufl-legacy-and-legacy-dolfin/11583 . 921s 921s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 921s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 921s FAILED 928s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] FAILED 935s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] FAILED 938s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name0] Package dolfin did fail to import with error: 938s Importing dolfin was not successful. 938s stdout contains 938s stderr contains Traceback (most recent call last): 938s File "", line 1, in 938s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 938s pusimp.prevent_user_site_imports( 938s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 938s raise ImportError(import_error) 938s ImportError: pusimp has detected the following problems with dolfin dependencies: 938s 1) Broken dependencies: 938s * ffc is broken. Error on import was 'ufl_legacy was purposely broken.'. 938s * ufl_legacy is broken. Error on import was 'ufl_legacy was purposely broken.'. 938s 938s pusimp suggests to apply all of the following fixes: 938s 1) To fix broken dependencies: 938s * run '/tmp/tmptb1b5aqy/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmptb1b5aqy/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 938s * run '/tmp/tmptb1b5aqy/venv/bin/python3 -m pip show fenics-ufl-legacy' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmptb1b5aqy/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ufl-legacy' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 938s 938s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 938s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 938s PASSED 941s python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_broken_non_optional_packages[dependencies_import_name1] Package dolfin did fail to import with error: 941s Importing dolfin was not successful. 941s stdout contains 941s stderr contains Traceback (most recent call last): 941s File "", line 1, in 941s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 44, in 941s pusimp.prevent_user_site_imports( 941s File "/usr/lib/python3/dist-packages/pusimp/prevent_user_site_imports.py", line 189, in prevent_user_site_imports 941s raise ImportError(import_error) 941s ImportError: pusimp has detected the following problems with dolfin dependencies: 941s 1) Broken dependencies: 941s * ffc is broken. Error on import was 'ffc was purposely broken.'. 941s 941s pusimp suggests to apply all of the following fixes: 941s 1) To fix broken dependencies: 941s * run '/tmp/tmp_e35pt1c/venv/bin/python3 -m pip show fenics-ffc' in a terminal: if the location field is not /usr/lib/python3/dist-packages consider running '/tmp/tmp_e35pt1c/venv/bin/python3 -m pip uninstall --break-system-packages fenics-ffc' in a terminal, because the broken dependency is probably being imported from a local path rather than from the path provided by apt. 941s 941s You can disable this check by exporting the DOLFIN_ALLOW_USER_SITE_IMPORTS environment variable. Note, however, that this may break the installation provided by apt. 941s If you believe that this message appears incorrectly, report this at https://fenicsproject.discourse.group/ . 941s PASSED 944s python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] FAILED 944s 944s =================================== FAILURES =================================== 944s ______________ test_dolfin_import_success_without_local_packages _______________ 944s 944s def test_dolfin_import_success_without_local_packages() -> None: 944s """Test that dolfin imports correctly without any extra local packages.""" 944s > assert_package_import_success_without_local_packages( 944s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py" 944s ) 944s 944s python/test/debian-only/test_pusimp.py:47: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:202: in assert_package_import_success_without_local_packages 944s assert_package_location(sys.executable, package, package_path) 944s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 944s assert_has_package(executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/usr/bin/python3.12', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] _ 944s 944s dependencies_import_name = ['ufl_legacy'] 944s dependencies_pypi_name = ['fenics-ufl-legacy'] 944s dependencies_extra_error_message = [] 944s 944s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 944s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 944s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 944s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 944s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 944s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 944s ]) 944s def test_dolfin_import_errors_with_local_packages( 944s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 944s dependencies_extra_error_message: typing.List[str] 944s ) -> None: 944s """Test that dolfin fails to import with extra local packages.""" 944s > assert_package_import_errors_with_local_packages( 944s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 944s pip_install_call, pip_uninstall_call 944s ) 944s 944s python/test/debian-only/test_pusimp.py:64: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 944s assert_has_package(virtual_env.executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/tmp/tmpuf6vklj8/venv/bin/python3', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] _ 944s 944s dependencies_import_name = ['ufl'], dependencies_pypi_name = ['fenics-ufl'] 944s dependencies_extra_error_message = ['legacy dolfin codes must now import ufl_legacy instead of ufl'] 944s 944s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 944s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 944s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 944s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 944s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 944s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 944s ]) 944s def test_dolfin_import_errors_with_local_packages( 944s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 944s dependencies_extra_error_message: typing.List[str] 944s ) -> None: 944s """Test that dolfin fails to import with extra local packages.""" 944s > assert_package_import_errors_with_local_packages( 944s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 944s pip_install_call, pip_uninstall_call 944s ) 944s 944s python/test/debian-only/test_pusimp.py:64: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 944s assert_has_package(virtual_env.executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/tmp/tmp1edzqlp5/venv/bin/python3', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] _ 944s 944s dependencies_import_name = ['FIAT', 'ufl_legacy'] 944s dependencies_pypi_name = ['fenics-fiat', 'fenics-ufl-legacy'] 944s dependencies_extra_error_message = [] 944s 944s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 944s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 944s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 944s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 944s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 944s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 944s ]) 944s def test_dolfin_import_errors_with_local_packages( 944s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 944s dependencies_extra_error_message: typing.List[str] 944s ) -> None: 944s """Test that dolfin fails to import with extra local packages.""" 944s > assert_package_import_errors_with_local_packages( 944s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 944s pip_install_call, pip_uninstall_call 944s ) 944s 944s python/test/debian-only/test_pusimp.py:64: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 944s assert_has_package(virtual_env.executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/tmp/tmp_eyca9um/venv/bin/python3', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s _ test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] _ 944s 944s dependencies_import_name = ['ufl', 'ufl_legacy'] 944s dependencies_pypi_name = ['fenics-ufl', 'fenics-ufl-legacy'] 944s dependencies_extra_error_message = ['legacy dolfin codes must now import ufl_legacy instead of ufl'] 944s 944s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 944s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name,dependencies_extra_error_message", [ 944s (["ufl_legacy"], ["fenics-ufl-legacy"], []), 944s (["ufl"], ["fenics-ufl"], [UFL_LEGACY_WARNING]), 944s (["FIAT", "ufl_legacy"], ["fenics-fiat", "fenics-ufl-legacy"], []), 944s (["ufl", "ufl_legacy"], ["fenics-ufl", "fenics-ufl-legacy"], [UFL_LEGACY_WARNING]) 944s ]) 944s def test_dolfin_import_errors_with_local_packages( 944s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str], 944s dependencies_extra_error_message: typing.List[str] 944s ) -> None: 944s """Test that dolfin fails to import with extra local packages.""" 944s > assert_package_import_errors_with_local_packages( 944s "dolfin", dependencies_import_name, dependencies_pypi_name, dependencies_extra_error_message, 944s pip_install_call, pip_uninstall_call 944s ) 944s 944s python/test/debian-only/test_pusimp.py:64: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:238: in assert_package_import_errors_with_local_packages 944s assert_has_package(virtual_env.executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/tmp/tmppghp7qq5/venv/bin/python3', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s _ test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] _ 944s 944s dependencies_import_name = ['ufl_legacy'] 944s dependencies_pypi_name = ['fenics-ufl-legacy'] 944s 944s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 944s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name", [ 944s (["ufl_legacy"], ["fenics-ufl-legacy"]), 944s (["ufl"], ["fenics-ufl"]) 944s ]) 944s def test_dolfin_import_success_with_allowed_local_packages( 944s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str] 944s ) -> None: 944s """Test that dolfin imports correctly even with extra local packages when asked to allow user-site imports.""" 944s > assert_package_import_success_with_allowed_local_packages( 944s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", 944s dependencies_import_name, dependencies_pypi_name, pip_install_call 944s ) 944s 944s python/test/debian-only/test_pusimp.py:79: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:267: in assert_package_import_success_with_allowed_local_packages 944s assert_package_location(virtual_env.executable, package, package_path) 944s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 944s assert_has_package(executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/tmp/tmp2wczi1i_/venv/bin/python3', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s _ test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] _ 944s 944s dependencies_import_name = ['ufl'], dependencies_pypi_name = ['fenics-ufl'] 944s 944s @pytest.mark.skipif(not has_internet, reason="Requires downloading from pypi.org") 944s @pytest.mark.parametrize("dependencies_import_name,dependencies_pypi_name", [ 944s (["ufl_legacy"], ["fenics-ufl-legacy"]), 944s (["ufl"], ["fenics-ufl"]) 944s ]) 944s def test_dolfin_import_success_with_allowed_local_packages( 944s dependencies_import_name: typing.List[str], dependencies_pypi_name: typing.List[str] 944s ) -> None: 944s """Test that dolfin imports correctly even with extra local packages when asked to allow user-site imports.""" 944s > assert_package_import_success_with_allowed_local_packages( 944s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", 944s dependencies_import_name, dependencies_pypi_name, pip_install_call 944s ) 944s 944s python/test/debian-only/test_pusimp.py:79: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:267: in assert_package_import_success_with_allowed_local_packages 944s assert_package_location(virtual_env.executable, package, package_path) 944s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 944s assert_has_package(executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/tmp/tmplqb4y338/venv/bin/python3', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s _ test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] _ 944s 944s dependencies_import_name = ['ufl'] 944s 944s @pytest.mark.parametrize("dependencies_import_name", [ 944s ["ufl"] 944s ]) 944s def test_dolfin_import_success_with_broken_optional_packages(dependencies_import_name: typing.List[str]) -> None: 944s """Test that dolfin fails to import imports correctly when optional packages are broken.""" 944s > assert_package_import_success_with_broken_optional_packages( 944s "dolfin", "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", dependencies_import_name, [True] 944s ) 944s 944s python/test/debian-only/test_pusimp.py:99: 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s /usr/lib/python3/dist-packages/pusimp/utils.py:311: in assert_package_import_success_with_broken_optional_packages 944s assert_package_location(virtual_env.executable, package, package_path) 944s /usr/lib/python3/dist-packages/pusimp/utils.py:47: in assert_package_location 944s assert_has_package(executable, package) 944s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 944s 944s executable = '/tmp/tmpuv91hxzo/venv/bin/python3', package = 'dolfin' 944s 944s def assert_has_package(executable: str, package: str) -> None: 944s """Assert that a package is installed. 944s 944s Note that it is not safe to simply import the package in the current pytest environment, 944s since the environment itself might change from one test to the other, but python packages 944s can be imported only once and not unloaded. 944s """ 944s run_import = subprocess.run(f"{executable} -c 'import {package}'", shell=True, capture_output=True) 944s > assert run_import.returncode == 0, ( 944s f"Importing {package} was not successful.\n" 944s f"stdout contains {run_import.stdout.decode().strip()}\n" 944s f"stderr contains {run_import.stderr.decode().strip()}" 944s ) 944s E AssertionError: Importing dolfin was not successful. 944s E stdout contains ERROR: could not import mpi4py! 944s E stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s E 944s E The above exception was the direct cause of the following exception: 944s E 944s E Traceback (most recent call last): 944s E File "", line 1, in 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s E from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s E from dolfin.fem.form import Form 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s E from dolfin.jit.jit import dolfin_pc, ffc_jit 944s E File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s E def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s E ^^^^^^^^^^^^^^ 944s E RuntimeError: Error when importing mpi4py 944s 944s /usr/lib/python3/dist-packages/pusimp/utils.py:32: AssertionError 944s =========================== short test summary info ============================ 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_without_local_packages - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name0-dependencies_pypi_name0-dependencies_extra_error_message0] - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name1-dependencies_pypi_name1-dependencies_extra_error_message1] - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name2-dependencies_pypi_name2-dependencies_extra_error_message2] - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_errors_with_local_packages[dependencies_import_name3-dependencies_pypi_name3-dependencies_extra_error_message3] - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name0-dependencies_pypi_name0] - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_allowed_local_packages[dependencies_import_name1-dependencies_pypi_name1] - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s FAILED python/test/debian-only/test_pusimp.py::test_dolfin_import_success_with_broken_optional_packages[dependencies_import_name0] - AssertionError: Importing dolfin was not successful. 944s stdout contains ERROR: could not import mpi4py! 944s stderr contains ValueError: mpi4py.MPI.Op size changed, may indicate binary incompatibility. Expected 56 from C header, got 40 from PyObject 944s 944s The above exception was the direct cause of the following exception: 944s 944s Traceback (most recent call last): 944s File "", line 1, in 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/__init__.py", line 170, in 944s from .fem.assembling import (assemble, assemble_system, assemble_multimesh, assemble_mixed, 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/assembling.py", line 34, in 944s from dolfin.fem.form import Form 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/fem/form.py", line 12, in 944s from dolfin.jit.jit import dolfin_pc, ffc_jit 944s File "/usr/lib/petsc/lib/python3/dist-packages/dolfin/jit/jit.py", line 125, in 944s def compile_class(cpp_data, mpi_comm=MPI.comm_world): 944s ^^^^^^^^^^^^^^ 944s RuntimeError: Error when importing mpi4py 944s ==================== 8 failed, 2 passed in 69.46s (0:01:09) ==================== 944s autopkgtest [21:04:20]: test test-dolfin-python-pusimp: -----------------------] 945s autopkgtest [21:04:21]: test test-dolfin-python-pusimp: - - - - - - - - - - results - - - - - - - - - - 945s test-dolfin-python-pusimp FAIL non-zero exit status 1 945s autopkgtest [21:04:21]: @@@@@@@@@@@@@@@@@@@@ summary 945s test-dolfin-cpp PASS 945s test-dolfin-python-unittest FAIL non-zero exit status 4 945s test-dolfin-python-demo FAIL non-zero exit status 1 945s test-dolfin-python-pusimp FAIL non-zero exit status 1 950s virt: nova [W] Skipping flock for amd64 950s virt: Creating nova instance adt-plucky-amd64-dolfin-20241116-204836-juju-7f2275-prod-proposed-migration-environment-2-79af4fff-bd84-4f07-b701-a11c9b8a735b from image adt/ubuntu-plucky-amd64-server-20241116.img (UUID b82727a2-bb7f-4d76-a476-69f4305c6899)... 950s virt: nova [W] Skipping flock for amd64 950s virt: Creating nova instance adt-plucky-amd64-dolfin-20241116-204836-juju-7f2275-prod-proposed-migration-environment-2-79af4fff-bd84-4f07-b701-a11c9b8a735b from image adt/ubuntu-plucky-amd64-server-20241116.img (UUID b82727a2-bb7f-4d76-a476-69f4305c6899)...