0s autopkgtest [19:41:22]: starting date and time: 2025-02-15 19:41:22+0000 0s autopkgtest [19:41:22]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:41:22]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k1j0pqos/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade diamond-aligner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-13.secgroup --name adt-plucky-amd64-diamond-aligner-20250215-194122-juju-7f2275-prod-proposed-migration-environment-20-a4aa2f7d-c687-4cf8-ad66-c2340f234860 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [19:42:14]: testbed dpkg architecture: amd64 53s autopkgtest [19:42:15]: testbed apt version: 2.9.28 53s autopkgtest [19:42:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 53s autopkgtest [19:42:15]: testbed release detected to be: None 54s autopkgtest [19:42:16]: updating testbed package index (apt update) 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 55s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 55s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [822 kB] 55s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [62.8 kB] 55s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.7 kB] 55s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [82.9 kB] 55s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.0 kB] 55s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B] 55s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B] 55s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [823 kB] 55s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [287 kB] 55s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3520 B] 55s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [10.6 kB] 55s Fetched 2294 kB in 1s (2384 kB/s) 56s Reading package lists... 56s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade... 57s The following packages will be upgraded: 57s libtasn1-6 57s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Need to get 51.2 kB of archives. 57s After this operation, 22.5 kB of additional disk space will be used. 57s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libtasn1-6 amd64 4.20.0-2 [51.2 kB] 58s Fetched 51.2 kB in 0s (112 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108914 files and directories currently installed.) 58s Preparing to unpack .../libtasn1-6_4.20.0-2_amd64.deb ... 58s Unpacking libtasn1-6:amd64 (4.20.0-2) over (4.19.0-3build1) ... 58s Setting up libtasn1-6:amd64 (4.20.0-2) ... 58s Processing triggers for libc-bin (2.40-4ubuntu1) ... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. 59s autopkgtest [19:42:21]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 60s Starting 2 pkgProblemResolver with broken count: 0 60s Done 60s Entering ResolveByKeep 60s 60s The following packages will be upgraded: 60s iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales 61s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 11.8 MB of archives. 61s After this operation, 746 kB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-dev-bin amd64 2.41-1ubuntu1 [24.7 kB] 61s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6-dev amd64 2.41-1ubuntu1 [2182 kB] 61s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 locales all 2.41-1ubuntu1 [4246 kB] 61s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc6 amd64 2.41-1ubuntu1 [3327 kB] 61s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libc-bin amd64 2.41-1ubuntu1 [701 kB] 61s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 iproute2 amd64 6.13.0-1ubuntu1 [1277 kB] 62s Preconfiguring packages ... 62s Fetched 11.8 MB in 1s (12.7 MB/s) 62s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108914 files and directories currently installed.) 62s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_amd64.deb ... 62s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 62s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_amd64.deb ... 62s Unpacking libc6-dev:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 62s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 62s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 62s Preparing to unpack .../libc6_2.41-1ubuntu1_amd64.deb ... 62s Checking for services that may need to be restarted... 62s Checking init scripts... 62s Checking for services that may need to be restarted... 62s Checking init scripts... 62s Stopping some services possibly affected by the upgrade (will be restarted later): 62s cron: stopping...done. 62s 62s Unpacking libc6:amd64 (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 63s Setting up libc6:amd64 (2.41-1ubuntu1) ... 63s Checking for services that may need to be restarted... 63s Checking init scripts... 63s Restarting services possibly affected by the upgrade: 63s cron: restarting...done. 63s 63s Services restarted successfully. 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108915 files and directories currently installed.) 63s Preparing to unpack .../libc-bin_2.41-1ubuntu1_amd64.deb ... 63s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 63s Setting up libc-bin (2.41-1ubuntu1) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108915 files and directories currently installed.) 63s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_amd64.deb ... 63s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 63s Setting up iproute2 (6.13.0-1ubuntu1) ... 64s Setting up locales (2.41-1ubuntu1) ... 64s Installing new version of config file /etc/locale.alias ... 64s Generating locales (this might take a while)... 65s en_US.UTF-8... done 65s Generation complete. 65s Setting up libc-dev-bin (2.41-1ubuntu1) ... 65s Setting up libc6-dev:amd64 (2.41-1ubuntu1) ... 65s Processing triggers for man-db (2.13.0-1) ... 67s Processing triggers for systemd (257.2-3ubuntu1) ... 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Starting pkgProblemResolver with broken count: 0 68s Starting 2 pkgProblemResolver with broken count: 0 68s Done 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s autopkgtest [19:42:33]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 16:02:16 UTC 2025 71s autopkgtest [19:42:33]: @@@@@@@@@@@@@@@@@@@@ apt-source diamond-aligner 73s Get:1 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (dsc) [2199 B] 73s Get:2 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (tar) [4310 kB] 73s Get:3 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (diff) [129 kB] 75s gpgv: Signature made Wed Feb 7 10:24:42 2024 UTC 75s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 75s gpgv: issuer "tille@debian.org" 75s gpgv: Can't check signature: No public key 75s dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.9-1.dsc: no acceptable signature found 75s autopkgtest [19:42:35]: testing package diamond-aligner version 2.1.9-1 75s autopkgtest [19:42:37]: build not needed 76s autopkgtest [19:42:38]: test run-unit-test: preparing testbed 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Starting pkgProblemResolver with broken count: 0 77s Starting 2 pkgProblemResolver with broken count: 0 77s Done 77s The following NEW packages will be installed: 77s diamond-aligner 78s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 78s Need to get 2504 kB of archives. 78s After this operation, 8510 kB of additional disk space will be used. 78s Get:1 http://ftpmaster.internal/ubuntu plucky/universe amd64 diamond-aligner amd64 2.1.9-1 [2504 kB] 78s Fetched 2504 kB in 1s (4046 kB/s) 78s Selecting previously unselected package diamond-aligner. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108916 files and directories currently installed.) 78s Preparing to unpack .../diamond-aligner_2.1.9-1_amd64.deb ... 78s Unpacking diamond-aligner (2.1.9-1) ... 78s Setting up diamond-aligner (2.1.9-1) ... 78s Processing triggers for man-db (2.13.0-1) ... 80s autopkgtest [19:42:42]: test run-unit-test: [----------------------- 80s + mktemp -d 80s + TESTDIR=/tmp/tmp.vPnAtXMkRU 80s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.vPnAtXMkRU/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 80s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 80s Documentation, support and updates available at http://www.diamondsearch.org 80s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 80s 80s #CPU threads: 1 80s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 80s Temporary directory: /tmp/tmp.vPnAtXMkRU 80s #Target sequences to report alignments for: 25 80s Opening the database... [0s] 80s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 80s Block size = 2000000000 80s Opening the input file... [0s] 80s Opening the output file... [0s] 80s Loading query sequences... [0s] 80s Masking queries... [0.005s] 80s Algorithm: Double-indexed 80s Building query histograms... [0.014s] 80s Seeking in database... [0s] 80s Loading reference sequences... [0s] 80s Masking reference... [0.003s] 80s Initializing temporary storage... [0s] 80s Building reference histograms... [0.012s] 80s Allocating buffers... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Deallocating buffers... [0s] 80s Clearing query masking... [0s] 80s Computing alignments... Loading trace points... [0.004s] 80s Sorting trace points... [0s] 80s Computing alignments... [0.086s] 80s Deallocating buffers... [0s] 80s Loading trace points... [0s] 80s [0.09s] 80s Deallocating reference... [0s] 80s Loading reference sequences... [0s] 80s Deallocating buffers... [0s] 80s Deallocating queries... [0s] 80s Loading query sequences... [0s] 80s Closing the input file... [0s] 80s Closing the output file... [0s] 80s Closing the database... [0s] 80s Cleaning up... [0s] 80s Total time = 0.589s 80s Reported 77 pairwise alignments, 77 HSPs. 80s 72 queries aligned. 80s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.vPnAtXMkRU/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 80s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 80s Documentation, support and updates available at http://www.diamondsearch.org 80s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 80s 80s #CPU threads: 1 80s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 80s Temporary directory: /tmp/tmp.vPnAtXMkRU 80s #Target sequences to report alignments for: 25 80s Opening the database... [0s] 80s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 80s Block size = 2000000000 80s Opening the input file... [0s] 80s Opening the output file... [0s] 80s Loading query sequences... [0s] 80s Masking queries... [0.01s] 80s Algorithm: Double-indexed 80s Building query histograms... [0.013s] 80s Seeking in database... [0s] 80s Loading reference sequences... [0s] 80s Masking reference... [0.003s] 80s Initializing temporary storage... [0s] 80s Building reference histograms... [0.007s] 80s Allocating buffers... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.002s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 80s Building reference seed array... [0.001s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 80s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 80s Building reference seed array... [0.002s] 80s Building query seed array... [0.001s] 80s Computing hash join... [0s] 80s Masking low complexity seeds... [0s] 80s Searching alignments... [0s] 80s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Deallocating buffers... [0s] 81s Clearing query masking... [0s] 81s Computing alignments... Loading trace points... [0.001s] 81s Sorting trace points... [0s] 81s Computing alignments... [0.011s] 81s Deallocating buffers... [0s] 81s Loading trace points... [0s] 81s [0.013s] 81s Deallocating reference... [0s] 81s Loading reference sequences... [0s] 81s Deallocating buffers... [0s] 81s Deallocating queries... [0s] 81s Loading query sequences... [0s] 81s Closing the input file... [0s] 81s Closing the output file... [0s] 81s Closing the database... [0s] 81s Cleaning up... [0s] 81s Total time = 0.471s 81s Reported 41 pairwise alignments, 41 HSPs. 81s 15 queries aligned. 81s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.vPnAtXMkRU/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 81s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 81s Documentation, support and updates available at http://www.diamondsearch.org 81s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 81s 81s #CPU threads: 1 81s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 81s Temporary directory: /tmp/tmp.vPnAtXMkRU 81s #Target sequences to report alignments for: 25 81s Opening the database... [0s] 81s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 81s Block size = 2000000000 81s Opening the input file... [0s] 81s Opening the output file... [0s] 81s Loading query sequences... [0s] 81s Masking queries... [0.006s] 81s Algorithm: Double-indexed 81s Building query histograms... [0.003s] 81s Seeking in database... [0s] 81s Loading reference sequences... [0s] 81s Masking reference... [0.002s] 81s Initializing temporary storage... [0s] 81s Building reference histograms... [0.008s] 81s Allocating buffers... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 81s Building reference seed array... [0.002s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Deallocating buffers... [0s] 81s Clearing query masking... [0s] 81s Computing alignments... Loading trace points... [0.002s] 81s Sorting trace points... [0s] 81s Computing alignments... [0.021s] 81s Deallocating buffers... [0s] 81s Loading trace points... [0s] 81s [0.025s] 81s Deallocating reference... [0s] 81s Loading reference sequences... [0s] 81s Deallocating buffers... [0s] 81s Deallocating queries... [0s] 81s Loading query sequences... [0s] 81s Closing the input file... [0s] 81s Closing the output file... [0s] 81s Closing the database... [0s] 81s Cleaning up... [0s] 81s Total time = 0.377s 81s Reported 64 pairwise alignments, 64 HSPs. 81s 33 queries aligned. 81s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.vPnAtXMkRU/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 81s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 81s Documentation, support and updates available at http://www.diamondsearch.org 81s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 81s 81s #CPU threads: 1 81s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 81s Temporary directory: /tmp/tmp.vPnAtXMkRU 81s #Target sequences to report alignments for: 25 81s Opening the database... [0s] 81s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 81s Block size = 2000000000 81s Opening the input file... [0s] 81s Opening the output file... [0s] 81s Loading query sequences... [0s] 81s Masking queries... [0.007s] 81s Algorithm: Double-indexed 81s Building query histograms... [0.011s] 81s Seeking in database... [0s] 81s Loading reference sequences... [0s] 81s Masking reference... [0.001s] 81s Initializing temporary storage... [0s] 81s Building reference histograms... [0.005s] 81s Allocating buffers... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 81s Building reference seed array... [0s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.001s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 81s Searching alignments... [0s] 81s Deallocating memory... [0s] 81s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 81s Building reference seed array... [0.001s] 81s Building query seed array... [0.002s] 81s Computing hash join... [0s] 81s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Deallocating buffers... [0s] 82s Clearing query masking... [0s] 82s Computing alignments... Loading trace points... [0.003s] 82s Sorting trace points... [0s] 82s Computing alignments... [0.042s] 82s Deallocating buffers... [0s] 82s Loading trace points... [0s] 82s [0.046s] 82s Deallocating reference... [0s] 82s Loading reference sequences... [0s] 82s Deallocating buffers... [0s] 82s Deallocating queries... [0s] 82s Loading query sequences... [0s] 82s Closing the input file... [0s] 82s Closing the output file... [0s] 82s Closing the database... [0s] 82s Cleaning up... [0s] 82s Total time = 0.415s 82s Reported 133 pairwise alignments, 133 HSPs. 82s 109 queries aligned. 82s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.vPnAtXMkRU/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 82s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 82s Documentation, support and updates available at http://www.diamondsearch.org 82s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 82s 82s #CPU threads: 1 82s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 82s Temporary directory: /tmp/tmp.vPnAtXMkRU 82s #Target sequences to report alignments for: 25 82s Opening the database... [0s] 82s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 82s Block size = 2000000000 82s Opening the input file... [0s] 82s Opening the output file... [0s] 82s Loading query sequences... [0s] 82s Masking queries... [0.006s] 82s Algorithm: Double-indexed 82s Building query histograms... [0.004s] 82s Seeking in database... [0s] 82s Loading reference sequences... [0s] 82s Masking reference... [0.003s] 82s Initializing temporary storage... [0s] 82s Building reference histograms... [0.008s] 82s Allocating buffers... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Deallocating buffers... [0s] 82s Clearing query masking... [0s] 82s Computing alignments... Loading trace points... [0.002s] 82s Sorting trace points... [0s] 82s Computing alignments... [0.023s] 82s Deallocating buffers... [0s] 82s Loading trace points... [0s] 82s [0.025s] 82s Deallocating reference... [0s] 82s Loading reference sequences... [0s] 82s Deallocating buffers... [0s] 82s Deallocating queries... [0s] 82s Loading query sequences... [0s] 82s Closing the input file... [0s] 82s Closing the output file... [0s] 82s Closing the database... [0s] 82s Cleaning up... [0s] 82s Total time = 0.38s 82s Reported 62 pairwise alignments, 62 HSPs. 82s 33 queries aligned. 82s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.vPnAtXMkRU/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 82s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 82s Documentation, support and updates available at http://www.diamondsearch.org 82s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 82s 82s #CPU threads: 1 82s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 82s Temporary directory: /tmp/tmp.vPnAtXMkRU 82s #Target sequences to report alignments for: 25 82s Opening the database... [0s] 82s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 82s Block size = 2000000000 82s Opening the input file... [0s] 82s Opening the output file... [0s] 82s Loading query sequences... [0s] 82s Masking queries... [0.007s] 82s Algorithm: Double-indexed 82s Building query histograms... [0.007s] 82s Seeking in database... [0s] 82s Loading reference sequences... [0s] 82s Masking reference... [0.001s] 82s Initializing temporary storage... [0s] 82s Building reference histograms... [0.003s] 82s Allocating buffers... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 82s Building reference seed array... [0s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.002s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0.001s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Deallocating buffers... [0s] 82s Clearing query masking... [0s] 82s Computing alignments... Loading trace points... [0.002s] 82s Sorting trace points... [0s] 82s Computing alignments... [0.041s] 82s Deallocating buffers... [0s] 82s Loading trace points... [0s] 82s [0.045s] 82s Deallocating reference... [0s] 82s Loading reference sequences... [0s] 82s Deallocating buffers... [0s] 82s Deallocating queries... [0s] 82s Loading query sequences... [0s] 82s Closing the input file... [0s] 82s Closing the output file... [0s] 82s Closing the database... [0s] 82s Cleaning up... [0s] 82s Total time = 0.388s 82s Reported 131 pairwise alignments, 131 HSPs. 82s 109 queries aligned. 82s + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.vPnAtXMkRU/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 82s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 82s Documentation, support and updates available at http://www.diamondsearch.org 82s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 82s 82s #CPU threads: 1 82s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 82s Temporary directory: /tmp/tmp.vPnAtXMkRU 82s #Target sequences to report alignments for: 25 82s Opening the database... [0s] 82s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 82s Block size = 2000000000 82s Opening the input file... [0s] 82s Opening the output file... [0s] 82s Loading query sequences... [0s] 82s Masking queries... [0s] 82s Algorithm: Double-indexed 82s Building query histograms... [0s] 82s Seeking in database... [0s] 82s Loading reference sequences... [0s] 82s Masking reference... [0.003s] 82s Initializing temporary storage... [0s] 82s Building reference histograms... [0.008s] 82s Allocating buffers... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0.001s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 82s Building reference seed array... [0.002s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 82s Searching alignments... [0s] 82s Deallocating memory... [0s] 82s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 82s Building reference seed array... [0.001s] 82s Building query seed array... [0s] 82s Computing hash join... [0s] 82s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 83s Building reference seed array... [0.003s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 83s Building reference seed array... [0.003s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Deallocating buffers... [0s] 83s Clearing query masking... [0s] 83s Computing alignments... Loading trace points... [0s] 83s Sorting trace points... [0s] 83s Computing alignments... [0s] 83s Deallocating buffers... [0s] 83s Loading trace points... [0s] 83s [0.001s] 83s Deallocating reference... [0s] 83s Loading reference sequences... [0s] 83s Deallocating buffers... [0s] 83s Deallocating queries... [0s] 83s Loading query sequences... [0s] 83s Closing the input file... [0s] 83s Closing the output file... [0s] 83s Closing the database... [0s] 83s Cleaning up... [0s] 83s Total time = 0.303s 83s Reported 1 pairwise alignments, 1 HSPs. 83s 1 queries aligned. 83s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.vPnAtXMkRU/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 83s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 83s Documentation, support and updates available at http://www.diamondsearch.org 83s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 83s 83s #CPU threads: 1 83s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 83s Temporary directory: /tmp/tmp.vPnAtXMkRU 83s #Target sequences to report alignments for: 25 83s Opening the database... [0s] 83s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 83s Block size = 2000000000 83s Opening the input file... [0s] 83s Opening the output file... [0s] 83s Loading query sequences... [0s] 83s Masking queries... [0.007s] 83s Algorithm: Double-indexed 83s Building query histograms... [0.008s] 83s Seeking in database... [0s] 83s Loading reference sequences... [0s] 83s Masking reference... [0s] 83s Initializing temporary storage... [0s] 83s Building reference histograms... [0s] 83s Allocating buffers... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0.001s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Deallocating buffers... [0s] 83s Clearing query masking... [0s] 83s Computing alignments... Loading trace points... [0s] 83s Sorting trace points... [0s] 83s Computing alignments... [0s] 83s Deallocating buffers... [0s] 83s Loading trace points... [0s] 83s [0.001s] 83s Deallocating reference... [0s] 83s Loading reference sequences... [0s] 83s Deallocating buffers... [0s] 83s Deallocating queries... [0s] 83s Loading query sequences... [0s] 83s Closing the input file... [0s] 83s Closing the output file... [0s] 83s Closing the database... [0s] 83s Cleaning up... [0s] 83s Total time = 0.295s 83s Reported 1 pairwise alignments, 1 HSPs. 83s 1 queries aligned. 83s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.vPnAtXMkRU/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 83s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 83s Documentation, support and updates available at http://www.diamondsearch.org 83s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 83s 83s #CPU threads: 1 83s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 83s Temporary directory: /tmp/tmp.vPnAtXMkRU 83s #Target sequences to report alignments for: 25 83s Opening the database... [0s] 83s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 83s Block size = 2000000000 83s Opening the input file... [0s] 83s Opening the output file... [0s] 83s Loading query sequences... [0s] 83s Masking queries... [0.006s] 83s Algorithm: Double-indexed 83s Building query histograms... [0.005s] 83s Seeking in database... [0s] 83s Loading reference sequences... [0s] 83s Masking reference... [0.002s] 83s Initializing temporary storage... [0s] 83s Building reference histograms... [0.007s] 83s Allocating buffers... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0.001s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 83s Building reference seed array... [0.002s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Deallocating buffers... [0s] 83s Clearing query masking... [0s] 83s Computing alignments... Loading trace points... [0.002s] 83s Sorting trace points... [0s] 83s Computing alignments... [0.072s] 83s Deallocating buffers... [0s] 83s Loading trace points... [0s] 83s [0.075s] 83s Deallocating reference... [0s] 83s Loading reference sequences... [0s] 83s Deallocating buffers... [0s] 83s Deallocating queries... [0s] 83s Loading query sequences... [0s] 83s Closing the input file... [0s] 83s Closing the output file... [0s] 83s Closing the database... [0s] 83s Cleaning up... [0s] 83s Total time = 0.441s 83s Reported 489 pairwise alignments, 489 HSPs. 83s 32 queries aligned. 83s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.vPnAtXMkRU/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 83s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 83s Documentation, support and updates available at http://www.diamondsearch.org 83s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 83s 83s #CPU threads: 1 83s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 83s Temporary directory: /tmp/tmp.vPnAtXMkRU 83s #Target sequences to report alignments for: 25 83s Opening the database... [0s] 83s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 83s Block size = 2000000000 83s Opening the input file... [0s] 83s Opening the output file... [0s] 83s Loading query sequences... [0s] 83s Masking queries... [0.004s] 83s Algorithm: Double-indexed 83s Building query histograms... [0.007s] 83s Seeking in database... [0s] 83s Loading reference sequences... [0s] 83s Masking reference... [0.001s] 83s Initializing temporary storage... [0s] 83s Building reference histograms... [0.004s] 83s Allocating buffers... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0.001s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.002s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 83s Building reference seed array... [0s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 83s Building reference seed array... [0.001s] 83s Building query seed array... [0.001s] 83s Computing hash join... [0s] 83s Masking low complexity seeds... [0s] 83s Searching alignments... [0s] 83s Deallocating memory... [0s] 83s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Deallocating buffers... [0s] 84s Clearing query masking... [0s] 84s Computing alignments... Loading trace points... [0.002s] 84s Sorting trace points... [0s] 84s Computing alignments... [0.14s] 84s Deallocating buffers... [0s] 84s Loading trace points... [0s] 84s [0.144s] 84s Deallocating reference... [0s] 84s Loading reference sequences... [0s] 84s Deallocating buffers... [0s] 84s Deallocating queries... [0s] 84s Loading query sequences... [0s] 84s Closing the input file... [0s] 84s Closing the output file... [0s] 84s Closing the database... [0s] 84s Cleaning up... [0s] 84s Total time = 0.521s 84s Reported 1173 pairwise alignments, 1173 HSPs. 84s 72 queries aligned. 84s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.vPnAtXMkRU/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 84s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 84s Documentation, support and updates available at http://www.diamondsearch.org 84s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 84s 84s #CPU threads: 1 84s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 84s Temporary directory: /tmp/tmp.vPnAtXMkRU 84s #Target sequences to report alignments for: 25 84s Opening the database... [0s] 84s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 84s Block size = 2000000000 84s Opening the input file... [0s] 84s Opening the output file... [0s] 84s Loading query sequences... [0s] 84s Masking queries... [0.005s] 84s Algorithm: Double-indexed 84s Building query histograms... [0.007s] 84s Seeking in database... [0s] 84s Loading reference sequences... [0s] 84s Masking reference... [0.002s] 84s Initializing temporary storage... [0s] 84s Building reference histograms... [0.007s] 84s Allocating buffers... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 84s Building reference seed array... [0.002s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Deallocating buffers... [0s] 84s Clearing query masking... [0s] 84s Computing alignments... Loading trace points... [0.002s] 84s Sorting trace points... [0s] 84s Computing alignments... [0.071s] 84s Deallocating buffers... [0s] 84s Loading trace points... [0s] 84s [0.075s] 84s Deallocating reference... [0s] 84s Loading reference sequences... [0s] 84s Deallocating buffers... [0s] 84s Deallocating queries... [0s] 84s Loading query sequences... [0s] 84s Closing the input file... [0s] 84s Closing the output file... [0s] 84s Closing the database... [0s] 84s Cleaning up... [0s] 84s Total time = 0.465s 84s Reported 489 pairwise alignments, 489 HSPs. 84s 32 queries aligned. 84s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.vPnAtXMkRU/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 84s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 84s Documentation, support and updates available at http://www.diamondsearch.org 84s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 84s 84s #CPU threads: 1 84s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 84s Temporary directory: /tmp/tmp.vPnAtXMkRU 84s #Target sequences to report alignments for: 25 84s Opening the database... [0s] 84s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 84s Block size = 2000000000 84s Opening the input file... [0s] 84s Opening the output file... [0s] 84s Loading query sequences... [0s] 84s Masking queries... [0.004s] 84s Algorithm: Double-indexed 84s Building query histograms... [0.007s] 84s Seeking in database... [0s] 84s Loading reference sequences... [0s] 84s Masking reference... [0.001s] 84s Initializing temporary storage... [0s] 84s Building reference histograms... [0.003s] 84s Allocating buffers... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0.001s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 84s Building reference seed array... [0s] 84s Building query seed array... [0.002s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 84s Building reference seed array... [0.001s] 84s Building query seed array... [0.001s] 84s Computing hash join... [0s] 84s Masking low complexity seeds... [0s] 84s Searching alignments... [0s] 84s Deallocating memory... [0s] 84s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 84s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Deallocating buffers... [0s] 85s Clearing query masking... [0s] 85s Computing alignments... Loading trace points... [0.002s] 85s Sorting trace points... [0s] 85s Computing alignments... [0.145s] 85s Deallocating buffers... [0s] 85s Loading trace points... [0s] 85s [0.149s] 85s Deallocating reference... [0s] 85s Loading reference sequences... [0s] 85s Deallocating buffers... [0s] 85s Deallocating queries... [0s] 85s Loading query sequences... [0s] 85s Closing the input file... [0s] 85s Closing the output file... [0s] 85s Closing the database... [0s] 85s Cleaning up... [0s] 85s Total time = 0.521s 85s Reported 1173 pairwise alignments, 1173 HSPs. 85s 72 queries aligned. 85s + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.vPnAtXMkRU/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 85s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 85s Documentation, support and updates available at http://www.diamondsearch.org 85s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 85s 85s #CPU threads: 1 85s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 85s Temporary directory: /tmp/tmp.vPnAtXMkRU 85s #Target sequences to report alignments for: 25 85s Opening the database... [0s] 85s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 85s Block size = 2000000000 85s Opening the input file... [0s] 85s Opening the output file... [0s] 85s Loading query sequences... [0s] 85s Masking queries... [0s] 85s Algorithm: Double-indexed 85s Building query histograms... [0s] 85s Seeking in database... [0s] 85s Loading reference sequences... [0s] 85s Masking reference... [0.002s] 85s Initializing temporary storage... [0s] 85s Building reference histograms... [0.007s] 85s Allocating buffers... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 85s Building reference seed array... [0.002s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 85s Building reference seed array... [0.001s] 85s Building query seed array... [0s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Deallocating buffers... [0s] 85s Clearing query masking... [0s] 85s Computing alignments... Loading trace points... [0.001s] 85s Sorting trace points... [0s] 85s Computing alignments... [0s] 85s Deallocating buffers... [0s] 85s Loading trace points... [0s] 85s [0.002s] 85s Deallocating reference... [0s] 85s Loading reference sequences... [0s] 85s Deallocating buffers... [0s] 85s Deallocating queries... [0s] 85s Loading query sequences... [0s] 85s Closing the input file... [0s] 85s Closing the output file... [0s] 85s Closing the database... [0s] 85s Cleaning up... [0s] 85s Total time = 0.276s 85s Reported 1 pairwise alignments, 1 HSPs. 85s 1 queries aligned. 85s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.vPnAtXMkRU/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 85s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 85s Documentation, support and updates available at http://www.diamondsearch.org 85s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 85s 85s #CPU threads: 1 85s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 85s Temporary directory: /tmp/tmp.vPnAtXMkRU 85s #Target sequences to report alignments for: 25 85s Opening the database... [0s] 85s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 85s Block size = 2000000000 85s Opening the input file... [0s] 85s Opening the output file... [0s] 85s Loading query sequences... [0s] 85s Masking queries... [0.004s] 85s Algorithm: Double-indexed 85s Building query histograms... [0.008s] 85s Seeking in database... [0s] 85s Loading reference sequences... [0s] 85s Masking reference... [0s] 85s Initializing temporary storage... [0s] 85s Building reference histograms... [0s] 85s Allocating buffers... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.001s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 85s Searching alignments... [0s] 85s Deallocating memory... [0s] 85s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 85s Building reference seed array... [0s] 85s Building query seed array... [0.002s] 85s Computing hash join... [0s] 85s Masking low complexity seeds... [0s] 86s Searching alignments... [0s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0s] 86s Deallocating memory... [0s] 86s Deallocating buffers... [0s] 86s Clearing query masking... [0s] 86s Computing alignments... Loading trace points... [0s] 86s Sorting trace points... [0s] 86s Computing alignments... [0s] 86s Deallocating buffers... [0s] 86s Loading trace points... [0s] 86s [0.001s] 86s Deallocating reference... [0s] 86s Loading reference sequences... [0s] 86s Deallocating buffers... [0s] 86s Deallocating queries... [0s] 86s Loading query sequences... [0s] 86s Closing the input file... [0s] 86s Closing the output file... [0s] 86s Closing the database... [0s] 86s Cleaning up... [0s] 86s Total time = 0.281s 86s Reported 1 pairwise alignments, 1 HSPs. 86s 1 queries aligned. 86s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.vPnAtXMkRU/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 86s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 86s Documentation, support and updates available at http://www.diamondsearch.org 86s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 86s 86s #CPU threads: 1 86s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 86s Temporary directory: /tmp/tmp.vPnAtXMkRU 86s #Target sequences to report alignments for: 25 86s Opening the database... [0s] 86s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 86s Block size = 2000000000 86s Opening the input file... [0s] 86s Opening the output file... [0s] 86s Loading query sequences... [0s] 86s Masking queries... [0.005s] 86s Algorithm: Double-indexed 86s Building query histograms... [0.004s] 86s Seeking in database... [0s] 86s Loading reference sequences... [0s] 86s Masking reference... [0.001s] 86s Initializing temporary storage... [0s] 86s Building reference histograms... [0.003s] 86s Allocating buffers... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.003s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Deallocating buffers... [0s] 86s Clearing query masking... [0s] 86s Computing alignments... Loading trace points... [0.004s] 86s Sorting trace points... [0s] 86s Computing alignments... [0.058s] 86s Deallocating buffers... [0s] 86s Loading trace points... [0s] 86s [0.063s] 86s Deallocating reference... [0s] 86s Loading reference sequences... [0s] 86s Deallocating buffers... [0s] 86s Deallocating queries... [0s] 86s Loading query sequences... [0s] 86s Closing the input file... [0s] 86s Closing the output file... [0s] 86s Closing the database... [0s] 86s Cleaning up... [0s] 86s Total time = 0.49s 86s Reported 390 pairwise alignments, 390 HSPs. 86s 39 queries aligned. 86s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.vPnAtXMkRU/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 86s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 86s Documentation, support and updates available at http://www.diamondsearch.org 86s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 86s 86s #CPU threads: 1 86s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 86s Temporary directory: /tmp/tmp.vPnAtXMkRU 86s #Target sequences to report alignments for: 25 86s Opening the database... [0s] 86s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 86s Block size = 2000000000 86s Opening the input file... [0s] 86s Opening the output file... [0s] 86s Loading query sequences... [0s] 86s Masking queries... [0.006s] 86s Algorithm: Double-indexed 86s Building query histograms... [0.004s] 86s Seeking in database... [0s] 86s Loading reference sequences... [0s] 86s Masking reference... [0.002s] 86s Initializing temporary storage... [0s] 86s Building reference histograms... [0.007s] 86s Allocating buffers... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.003s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.003s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.002s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 86s Building reference seed array... [0s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 86s Building reference seed array... [0.001s] 86s Building query seed array... [0.001s] 86s Computing hash join... [0s] 86s Masking low complexity seeds... [0s] 86s Searching alignments... [0.001s] 86s Deallocating memory... [0s] 86s Deallocating buffers... [0s] 86s Clearing query masking... [0s] 86s Computing alignments... Loading trace points... [0.002s] 86s Sorting trace points... [0s] 87s Computing alignments... [0.05s] 87s Deallocating buffers... [0s] 87s Loading trace points... [0s] 87s [0.054s] 87s Deallocating reference... [0s] 87s Loading reference sequences... [0s] 87s Deallocating buffers... [0s] 87s Deallocating queries... [0s] 87s Loading query sequences... [0s] 87s Closing the input file... [0s] 87s Closing the output file... [0s] 87s Closing the database... [0s] 87s Cleaning up... [0s] 87s Total time = 0.481s 87s Reported 390 pairwise alignments, 390 HSPs. 87s 40 queries aligned. 87s + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.vPnAtXMkRU/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 87s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 87s Documentation, support and updates available at http://www.diamondsearch.org 87s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 87s 87s #CPU threads: 1 87s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 87s Temporary directory: /tmp/tmp.vPnAtXMkRU 87s #Target sequences to report alignments for: 25 87s Opening the database... [0s] 87s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 87s Block size = 2000000000 87s Opening the input file... [0s] 87s Opening the output file... [0s] 87s Loading query sequences... [0s] 87s Masking queries... [0s] 87s Algorithm: Double-indexed 87s Building query histograms... [0s] 87s Seeking in database... [0s] 87s Loading reference sequences... [0s] 87s Masking reference... [0.001s] 87s Initializing temporary storage... [0s] 87s Building reference histograms... [0.005s] 87s Allocating buffers... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Deallocating buffers... [0s] 87s Clearing query masking... [0s] 87s Computing alignments... Loading trace points... [0.001s] 87s Sorting trace points... [0s] 87s Computing alignments... [0s] 87s Deallocating buffers... [0s] 87s Loading trace points... [0s] 87s [0.002s] 87s Deallocating reference... [0s] 87s Loading reference sequences... [0s] 87s Deallocating buffers... [0s] 87s Deallocating queries... [0s] 87s Loading query sequences... [0s] 87s Closing the input file... [0s] 87s Closing the output file... [0s] 87s Closing the database... [0s] 87s Cleaning up... [0s] 87s Total time = 0.212s 87s Reported 1 pairwise alignments, 1 HSPs. 87s 1 queries aligned. 87s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.vPnAtXMkRU/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 87s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 87s Documentation, support and updates available at http://www.diamondsearch.org 87s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 87s 87s #CPU threads: 1 87s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 87s Temporary directory: /tmp/tmp.vPnAtXMkRU 87s #Target sequences to report alignments for: 25 87s Opening the database... [0s] 87s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 87s Block size = 2000000000 87s Opening the input file... [0s] 87s Opening the output file... [0s] 87s Loading query sequences... [0s] 87s Masking queries... [0.006s] 87s Algorithm: Double-indexed 87s Building query histograms... [0.004s] 87s Seeking in database... [0s] 87s Loading reference sequences... [0s] 87s Masking reference... [0s] 87s Initializing temporary storage... [0s] 87s Building reference histograms... [0s] 87s Allocating buffers... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0.001s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Deallocating buffers... [0s] 87s Clearing query masking... [0s] 87s Computing alignments... Loading trace points... [0s] 87s Sorting trace points... [0s] 87s Computing alignments... [0s] 87s Deallocating buffers... [0s] 87s Loading trace points... [0s] 87s [0.002s] 87s Deallocating reference... [0s] 87s Loading reference sequences... [0s] 87s Deallocating buffers... [0s] 87s Deallocating queries... [0s] 87s Loading query sequences... [0s] 87s Closing the input file... [0s] 87s Closing the output file... [0s] 87s Closing the database... [0s] 87s Cleaning up... [0s] 87s Total time = 0.236s 87s Reported 1 pairwise alignments, 1 HSPs. 87s 1 queries aligned. 87s + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.vPnAtXMkRU/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 87s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 87s Documentation, support and updates available at http://www.diamondsearch.org 87s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 87s 87s #CPU threads: 1 87s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 87s Temporary directory: /tmp/tmp.vPnAtXMkRU 87s #Target sequences to report alignments for: 25 87s Opening the database... [0s] 87s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 87s Block size = 2000000000 87s Opening the input file... [0s] 87s Opening the output file... [0s] 87s Loading query sequences... [0s] 87s Masking queries... [0s] 87s Algorithm: Double-indexed 87s Building query histograms... [0s] 87s Seeking in database... [0s] 87s Loading reference sequences... [0s] 87s Masking reference... [0.001s] 87s Initializing temporary storage... [0s] 87s Building reference histograms... [0.005s] 87s Allocating buffers... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 87s Building reference seed array... [0.001s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Deallocating buffers... [0s] 87s Clearing query masking... [0s] 87s Computing alignments... Loading trace points... [0.001s] 87s Sorting trace points... [0s] 87s Computing alignments... [0s] 87s Deallocating buffers... [0s] 87s Loading trace points... [0s] 87s [0.002s] 87s Deallocating reference... [0s] 87s Loading reference sequences... [0s] 87s Deallocating buffers... [0s] 87s Deallocating queries... [0s] 87s Loading query sequences... [0s] 87s Closing the input file... [0s] 87s Closing the output file... [0s] 87s Closing the database... [0s] 87s Cleaning up... [0s] 87s Total time = 0.183s 87s Reported 1 pairwise alignments, 1 HSPs. 87s 1 queries aligned. 87s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.vPnAtXMkRU/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 87s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 87s Documentation, support and updates available at http://www.diamondsearch.org 87s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 87s 87s #CPU threads: 1 87s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 87s Temporary directory: /tmp/tmp.vPnAtXMkRU 87s #Target sequences to report alignments for: 25 87s Opening the database... [0s] 87s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 87s Block size = 2000000000 87s Opening the input file... [0s] 87s Opening the output file... [0s] 87s Loading query sequences... [0s] 87s Masking queries... [0.006s] 87s Algorithm: Double-indexed 87s Building query histograms... [0.006s] 87s Seeking in database... [0s] 87s Loading reference sequences... [0s] 87s Masking reference... [0s] 87s Initializing temporary storage... [0s] 87s Building reference histograms... [0s] 87s Allocating buffers... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 87s Building reference seed array... [0s] 87s Building query seed array... [0.001s] 87s Computing hash join... [0s] 87s Masking low complexity seeds... [0s] 87s Searching alignments... [0s] 87s Deallocating memory... [0s] 87s Deallocating buffers... [0s] 87s Clearing query masking... [0s] 87s Computing alignments... Loading trace points... [0.001s] 87s Sorting trace points... [0s] 87s Computing alignments... [0.001s] 87s Deallocating buffers... [0s] 87s Loading trace points... [0s] 87s [0.002s] 87s Deallocating reference... [0s] 87s Loading reference sequences... [0s] 87s Deallocating buffers... [0s] 87s Deallocating queries... [0s] 87s Loading query sequences... [0s] 87s Closing the input file... [0s] 87s Closing the output file... [0s] 87s Closing the database... [0s] 87s Cleaning up... [0s] 87s Total time = 0.212s 87s Reported 1 pairwise alignments, 1 HSPs. 87s 1 queries aligned. 87s + rm -rf /tmp/tmp.vPnAtXMkRU 88s autopkgtest [19:42:50]: test run-unit-test: -----------------------] 91s run-unit-test PASS 91s autopkgtest [19:42:53]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 91s autopkgtest [19:42:53]: @@@@@@@@@@@@@@@@@@@@ summary 91s run-unit-test PASS 108s nova [W] Skipping flock for amd64 108s Creating nova instance adt-plucky-amd64-diamond-aligner-20250215-194122-juju-7f2275-prod-proposed-migration-environment-20-a4aa2f7d-c687-4cf8-ad66-c2340f234860 from image adt/ubuntu-plucky-amd64-server-20250215.img (UUID d1f7bb98-7df8-4026-816e-9f6798166d8b)... 108s nova [W] Timed out waiting for 67e4f8d9-869d-434e-9563-94e0aea59a82 to get deleted.