0s autopkgtest [04:50:44]: starting date and time: 2025-02-19 04:50:44+0000 0s autopkgtest [04:50:44]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [04:50:44]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fxhfbfgf/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dials --apt-upgrade dials --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dials/3.22.1+dfsg3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-24.secgroup --name adt-plucky-amd64-dials-20250219-042709-juju-7f2275-prod-proposed-migration-environment-15-c50ce731-51ad-4e0e-a571-f1b51ab7fac7 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 120s autopkgtest [04:52:44]: testbed dpkg architecture: amd64 120s autopkgtest [04:52:44]: testbed apt version: 2.9.29 121s autopkgtest [04:52:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 121s autopkgtest [04:52:45]: testbed release detected to be: None 122s autopkgtest [04:52:46]: updating testbed package index (apt update) 122s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 122s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 122s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 122s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 122s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB] 122s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.2 kB] 122s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [770 kB] 123s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 123s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [82.0 kB] 123s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [101 kB] 123s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B] 123s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B] 123s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [265 kB] 123s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [698 kB] 123s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [12.4 kB] 123s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3440 B] 123s Fetched 2145 kB in 1s (2116 kB/s) 124s Reading package lists... 124s + lsb_release --codename --short 124s + RELEASE=plucky 124s + cat 124s + [ plucky != trusty ] 124s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Calculating upgrade... 125s The following NEW packages will be installed: 125s libapt-pkg7.0 125s The following packages will be upgraded: 125s apt apt-utils rsyslog 125s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 125s Need to get 3342 kB of archives. 125s After this operation, 3693 kB of additional disk space will be used. 125s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.30 [1131 kB] 126s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.30 [1434 kB] 126s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.30 [222 kB] 126s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu1 [555 kB] 126s Fetched 3342 kB in 1s (4326 kB/s) 126s Selecting previously unselected package libapt-pkg7.0:amd64. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108925 files and directories currently installed.) 126s Preparing to unpack .../libapt-pkg7.0_2.9.30_amd64.deb ... 126s Unpacking libapt-pkg7.0:amd64 (2.9.30) ... 126s Setting up libapt-pkg7.0:amd64 (2.9.30) ... 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 126s Preparing to unpack .../archives/apt_2.9.30_amd64.deb ... 126s Unpacking apt (2.9.30) over (2.9.29) ... 127s Setting up apt (2.9.30) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 127s Preparing to unpack .../apt-utils_2.9.30_amd64.deb ... 127s Unpacking apt-utils (2.9.30) over (2.9.29) ... 127s Preparing to unpack .../rsyslog_8.2412.0-2ubuntu1_amd64.deb ... 127s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ... 127s Setting up apt-utils (2.9.30) ... 127s Setting up rsyslog (8.2412.0-2ubuntu1) ... 127s info: The user `syslog' is already a member of `adm'. 128s Processing triggers for libc-bin (2.40-4ubuntu1) ... 128s Processing triggers for man-db (2.13.0-1) ... 130s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 130s + /usr/lib/apt/apt-helper analyze-pattern ?true 130s + uname -r 130s + sed s/\./\\./g 130s + running_kernel_pattern=^linux-.*6\.12\.0-15-generic.* 130s + apt list ?obsolete 130s + tail -n+2 130s + cut -d/ -f1 130s + grep -v ^linux-.*6\.12\.0-15-generic.* 131s + true 131s + obsolete_pkgs= 131s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s + grep -q trusty /etc/lsb-release 131s + [ ! -d /usr/share/doc/unattended-upgrades ] 131s + [ ! -d /usr/share/doc/lxd ] 131s + [ ! -d /usr/share/doc/lxd-client ] 131s + [ ! -d /usr/share/doc/snapd ] 131s + type iptables 131s + cat 131s + chmod 755 /etc/rc.local 131s + . /etc/rc.local 131s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 131s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 131s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 131s + uname -m 131s + [ x86_64 = ppc64le ] 131s + [ -d /run/systemd/system ] 131s + systemd-detect-virt --quiet --vm 131s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 131s + cat 131s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 131s + echo COMPRESS=lz4 131s autopkgtest [04:52:55]: upgrading testbed (apt dist-upgrade and autopurge) 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 133s Entering ResolveByKeep 133s 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s autopkgtest [04:52:58]: rebooting testbed after setup commands that affected boot 158s autopkgtest [04:53:22]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 16:02:16 UTC 2025 160s autopkgtest [04:53:24]: @@@@@@@@@@@@@@@@@@@@ apt-source dials 164s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe dials 3.22.1+dfsg3-1 (dsc) [2713 B] 164s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe dials 3.22.1+dfsg3-1 (tar) [8378 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe dials 3.22.1+dfsg3-1 (diff) [13.5 kB] 164s gpgv: Signature made Wed Nov 13 11:42:44 2024 UTC 164s gpgv: using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC 164s gpgv: Can't check signature: No public key 164s dpkg-source: warning: cannot verify inline signature for ./dials_3.22.1+dfsg3-1.dsc: no acceptable signature found 164s autopkgtest [04:53:28]: testing package dials version 3.22.1+dfsg3-1 165s autopkgtest [04:53:29]: build not needed 166s autopkgtest [04:53:30]: test command1: preparing testbed 166s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s Starting pkgProblemResolver with broken count: 0 166s Starting 2 pkgProblemResolver with broken count: 0 166s Done 167s The following NEW packages will be installed: 167s adwaita-icon-theme at-spi2-common blt clang-18 dconf-gsettings-backend 167s dconf-service dials fontconfig fontconfig-config fonts-dejavu-core 167s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-katex 167s fonts-lato fonts-lyx fonts-mathjax gdb gtk-update-icon-cache 167s hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 167s libasan8 libasyncns0 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 167s libavahi-client3 libavahi-common-data libavahi-common3 libbabeltrace1 167s libblas3 libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev 167s libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 167s libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data 167s libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 167s libclang-common-18-dev libclang1-18 libcolord2 libcups2t64 libdatrie1 167s libdconf1 libdebuginfod-common libdebuginfod1t64 libdeflate0 167s libdouble-conversion3 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 167s libepoxy0 libexpat1-dev libflac12t64 libfontconfig1 libgbm1 libgc1 167s libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 167s libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 167s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgstreamer-plugins-base1.0-0 167s libgstreamer1.0-0 libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhdf5-310 167s libhdf5-hl-310 libhwasan0 libhwloc15 libhyphen0 libice6 libimagequant0 167s libinput-bin libinput10 libipt2 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 167s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-katex libjs-mathjax 167s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 167s liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmp3lame0 libmpg123-0t64 libmtdev1t64 167s libnetcdf22 libnorm1t64 libnotify4 libobjc-14-dev libobjc4 libogg0 167s libopengl0 libopenjp2-7 libopus0 liborc-0.4-0t64 libpango-1.0-0 167s libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 167s libpcre2-32-0 libpgm-5.3-0t64 libpixman-1-0 libpocl2-common libpocl2t64 167s libpulse0 libpython3-dev libpython3.13-dev libqhull-r8.0 libqt5charts5 167s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 167s libqt5location5 libqt5multimedia5 libqt5multimediawidgets5 libqt5network5t64 167s libqt5opengl5t64 libqt5positioning5 libqt5positioningquick5 167s libqt5printsupport5t64 libqt5qml5 libqt5qmlmodels5 libqt5quick5 167s libqt5quickwidgets5 libqt5remoteobjects5 libqt5sensors5 libqt5serialport5 167s libqt5sql5t64 libqt5svg5 libqt5test5t64 libqt5texttospeech5 167s libqt5webchannel5 libqt5webkit5 libqt5websockets5 libqt5widgets5t64 167s libqt5xml5t64 libqt5xmlpatterns5 libquadmath0 libraqm0 libsharpyuv0 libsm6 167s libsndfile1 libsodium23 libsource-highlight-common libsource-highlight4t64 167s libssm2 libstdc++-14-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 167s libtk8.6 libtsan2 libubsan1 libvorbis0a libvorbisenc2 libvulkan1 167s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 167s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 167s libwoff1 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 167s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 167s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 167s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 167s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1 167s libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 167s libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1 167s libzmq5 llvm-18-linker-tools mesa-libgallium ocl-icd-libopencl1 167s pocl-opencl-icd pymol-data python-matplotlib-data python3-all 167s python3-asttokens python3-brotli python3-cctbx python3-comm 167s python3-contourpy python3-coverage python3-cycler python3-dateutil 167s python3-debugpy python3-decorator python3-dev python3-dials 167s python3-dials-data python3-execnet python3-executing python3-fabio 167s python3-fastjsonschema python3-flexcache python3-flexparser 167s python3-fonttools python3-fs python3-h5py python3-h5py-serial 167s python3-hdf5plugin python3-importlib-resources python3-iniconfig 167s python3-ipykernel python3-ipython python3-jedi python3-joblib 167s python3-jupyter-client python3-jupyter-core python3-kiwisolver 167s python3-legacy-cgi python3-lxml python3-lz4 python3-mako python3-matplotlib 167s python3-matplotlib-inline python3-mpmath python3-mrcfile python3-natsort 167s python3-nbformat python3-nest-asyncio python3-numexpr python3-numpy 167s python3-nxmx python3-opengl python3-ordered-set python3-packaging 167s python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pil 167s python3-pil.imagetk python3-pint python3-platformdirs python3-plotly 167s python3-pluggy python3-pooch python3-procrunner python3-prompt-toolkit 167s python3-psutil python3-ptyprocess python3-pure-eval python3-pycbf 167s python3-pyfai python3-pymol python3-pyopencl python3-pyqt5 167s python3-pyqt5.qtchart python3-pyqt5.qtmultimedia python3-pyqt5.qtopengl 167s python3-pyqt5.qtpositioning python3-pyqt5.qtquick 167s python3-pyqt5.qtremoteobjects python3-pyqt5.qtsensors 167s python3-pyqt5.qtserialport python3-pyqt5.qtsql python3-pyqt5.qtsvg 167s python3-pyqt5.qttexttospeech python3-pyqt5.qtwebchannel 167s python3-pyqt5.qtwebkit python3-pyqt5.qtwebsockets 167s python3-pyqt5.qtxmlpatterns python3-pyqt5.sip python3-pytest 167s python3-pytest-mock python3-pytest-xdist python3-pytools python3-pytz 167s python3-qtconsole python3-qtpy python3-scipy python3-silx python3-six 167s python3-sklearn python3-sklearn-lib python3-stack-data python3-sympy 167s python3-tabulate python3-tenacity python3-threadpoolctl python3-tk 167s python3-tornado python3-tqdm python3-traitlets python3-typeshed python3-tz 167s python3-ufolib2 python3-unicodedata2 python3-wcwidth python3-wxgtk4.0 167s python3-zmq python3.12 python3.12-minimal python3.12-tk python3.13-dev 167s python3.13-tk sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common 167s zlib1g-dev 167s 0 upgraded, 376 newly installed, 0 to remove and 0 not upgraded. 167s Need to get 330 MB of archives. 167s After this operation, 1873 MB of additional disk space will be used. 167s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB] 168s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 169s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 169s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgstreamer1.0-0 amd64 1.25.50-1 [1224 kB] 169s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liborc-0.4-0t64 amd64 1:0.4.40-1 [205 kB] 169s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.25.50-1 [1049 kB] 169s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libhyphen0 amd64 2.8.8-7build3 [26.5 kB] 169s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 169s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 169s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 169s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 169s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 170s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 170s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 170s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 170s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 170s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB] 170s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 170s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.1-1 [36.6 kB] 170s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 170s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 170s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 170s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.3.4-3ubuntu1 [42.9 kB] 170s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 170s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 170s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 170s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 170s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 170s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 170s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 170s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.3.4-3ubuntu1 [11.9 MB] 171s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.3.4-3ubuntu1 [33.3 kB] 171s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.1-1 [29.1 kB] 171s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 171s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.3.4-3ubuntu1 [136 kB] 171s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 172s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 172s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 172s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 172s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.3.4-3ubuntu1 [34.7 kB] 172s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.3.4-3ubuntu1 [146 kB] 172s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 172s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 172s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 172s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 172s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 172s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 172s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 173s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.14.0-1 [103 kB] 173s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 173s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB] 173s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.27.1-1 [155 kB] 173s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 173s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 173s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 173s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 173s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 173s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 173s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 173s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 174s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 174s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 174s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 174s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 174s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 174s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 174s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 174s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 174s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 174s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5positioning5 amd64 5.15.15+dfsg-3 [223 kB] 175s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-14ubuntu1 [30.5 kB] 175s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-14ubuntu1 [23.3 kB] 175s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-14ubuntu1 [27.5 kB] 175s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.11-0ubuntu2 [292 kB] 175s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 175s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-4ubuntu1 [208 kB] 175s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5qml5 amd64 5.15.15+dfsg-3 [1618 kB] 175s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5qmlmodels5 amd64 5.15.15+dfsg-3 [226 kB] 175s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5quick5 amd64 5.15.15+dfsg-3 [1880 kB] 176s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sensors5 amd64 5.15.15-2 [128 kB] 176s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5webchannel5 amd64 5.15.15-2 [66.2 kB] 176s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 176s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 176s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwoff1 amd64 1.0.2-2build1 [45.3 kB] 176s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 176s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-42 [14.8 MB] 177s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB] 177s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 178s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 178s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 178s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 178s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 178s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [161 kB] 178s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 gtk-update-icon-cache amd64 4.17.4+ds-4 [53.9 kB] 178s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 hicolor-icon-theme all 0.18-2 [13.3 kB] 178s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 adwaita-icon-theme all 48~beta-3 [578 kB] 178s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 at-spi2-common all 2.55.2-1 [8916 B] 178s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 178s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 178s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 178s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 178s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 179s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 179s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB] 179s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 15-20250213-1ubuntu1 [28.5 kB] 179s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 15-20250213-1ubuntu1 [3059 kB] 179s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 15-20250213-1ubuntu1 [1356 kB] 179s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 15-20250213-1ubuntu1 [2757 kB] 179s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 15-20250213-1ubuntu1 [1206 kB] 180s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 15-20250213-1ubuntu1 [1678 kB] 180s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 15-20250213-1ubuntu1 [152 kB] 180s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-17ubuntu1 [2814 kB] 180s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-17ubuntu1 [2507 kB] 180s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libgc1 amd64 1:8.2.8-1 [102 kB] 180s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libobjc4 amd64 15-20250213-1ubuntu1 [46.5 kB] 180s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libobjc-14-dev amd64 14.2.0-17ubuntu1 [194 kB] 180s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libclang-common-18-dev amd64 1:18.1.8-15 [739 kB] 181s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-18-linker-tools amd64 1:18.1.8-15 [1311 kB] 181s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 libclang1-18 amd64 1:18.1.8-15 [7753 kB] 181s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 clang-18 amd64 1:18.1.8-15 [80.1 kB] 181s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libdconf1 amd64 0.40.0-5 [39.8 kB] 181s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-service amd64 0.40.0-5 [28.4 kB] 182s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [22.7 kB] 182s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 182s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 182s Get:126 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 182s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-katex all 0.16.10+~cs6.1.0-2 [775 kB] 182s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-katex all 0.16.10+~cs6.1.0-2 [220 kB] 182s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 182s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 183s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB] 183s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B] 183s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 183s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 183s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 183s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 183s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 183s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 183s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 184s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 184s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build1 [32.7 kB] 184s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build1 [45.1 kB] 184s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-4.1ubuntu1 [10.7 MB] 185s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-python1.83.0 amd64 1.83.0-4.1ubuntu1 [325 kB] 185s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 185s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 185s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.2-1 [5501 kB] 185s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3-dev amd64 3.13.1-1~exp2 [10.5 kB] 185s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.2-1 [508 kB] 185s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 186s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 186s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dev amd64 3.13.1-1~exp2 [26.7 kB] 186s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-python1.83-dev amd64 1.83.0-4.1ubuntu1 [338 kB] 186s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-python-dev amd64 1.83.0.2ubuntu1 [4516 B] 186s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4-data all 8.0.0-4 [65.2 kB] 186s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4c0t64 amd64 8.0.0-4 [104 kB] 186s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB] 186s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmmdb2-0 amd64 2.0.22-1 [363 kB] 186s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4f0t64 amd64 8.0.0-4 [228 kB] 187s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4-dev amd64 8.0.0-4 [42.4 kB] 187s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 187s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 187s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 187s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-4build2 [361 kB] 187s Get:165 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcctbx0 amd64 2024.10+ds2+~3.22.1+ds1-4build1 [2057 kB] 187s Get:166 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcctbx-dev amd64 2024.10+ds2+~3.22.1+ds1-4build1 [1193 kB] 187s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-legacy-cgi all 2.6.1-2 [16.3 kB] 187s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-4build2 [164 kB] 187s Get:169 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 188s Get:170 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 188s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [5319 kB] 188s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 189s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 189s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.12.1-1 [1677 kB] 189s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.12.1-1 [7970 B] 189s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdf5plugin all 4.0.1-4 [20.5 kB] 189s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 189s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 189s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 189s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 189s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 189s Get:182 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 190s Get:183 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 190s Get:184 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 190s Get:185 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 190s Get:186 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 190s Get:187 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5 [589 kB] 190s Get:188 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB] 190s Get:189 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-1 [107 kB] 190s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B] 190s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5 [9936 B] 190s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1 [271 kB] 190s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 190s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 191s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-6 [90.7 kB] 191s Get:196 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB] 191s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1 [27.4 kB] 191s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 191s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu1 [22.3 MB] 192s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 192s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 192s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 192s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 193s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B] 193s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 193s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2 [1755 kB] 193s Get:207 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-importlib-resources all 6.5.2-1 [24.5 kB] 194s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3 [70.4 kB] 194s Get:209 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 194s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 194s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu2 [4697 kB] 194s Get:212 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 194s Get:213 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 194s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB] 194s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 194s Get:216 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-flexcache all 0.3-2 [13.4 kB] 194s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-flexparser all 0.4-1 [43.8 kB] 195s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pint all 0.24.4-1 [203 kB] 195s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nxmx all 0.0.4-1 [16.4 kB] 195s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ordered-set all 4.1.0-1 [9778 B] 195s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB] 195s Get:222 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 195s Get:223 http://ftpmaster.internal/ubuntu plucky/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 195s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 195s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.sip amd64 12.17.0-1 [78.3 kB] 195s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-4ubuntu1 [124 kB] 195s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5designer5 amd64 5.15.15-6 [2827 kB] 195s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-4ubuntu1 [122 kB] 196s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5help5 amd64 5.15.15-6 [162 kB] 196s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-4ubuntu1 [149 kB] 196s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-1build2 [2725 kB] 196s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-4ubuntu1 [150 kB] 196s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-1build2 [128 kB] 196s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 197s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 197s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol-data all 3.0.0+dfsg-3build1 [1394 kB] 197s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymol amd64 3.0.0+dfsg-3build1 [7716 kB] 198s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB] 198s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.1-2 [92.5 kB] 198s Get:240 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 198s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 libwxbase3.2-1t64 amd64 3.2.6+dfsg-2ubuntu1 [980 kB] 198s Get:242 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk1.0-0t64 amd64 2.55.2-1 [55.2 kB] 198s Get:243 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 198s Get:244 http://ftpmaster.internal/ubuntu plucky/main amd64 libatspi2.0-0t64 amd64 2.55.2-1 [87.6 kB] 198s Get:245 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk-bridge2.0-0t64 amd64 2.55.2-1 [69.0 kB] 198s Get:246 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 198s Get:247 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 199s Get:248 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo-gobject2 amd64 1.18.2-2 [127 kB] 199s Get:249 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolord2 amd64 1.4.7-1build2 [149 kB] 199s Get:250 http://ftpmaster.internal/ubuntu plucky/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB] 199s Get:251 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 199s Get:252 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 199s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 199s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 199s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 199s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 199s Get:257 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-cursor0 amd64 1.23.1-1 [10.9 kB] 199s Get:258 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-egl1 amd64 1.23.1-1 [5744 B] 199s Get:259 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B] 200s Get:260 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 200s Get:261 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcursor1 amd64 1:1.2.3-1 [23.1 kB] 200s Get:262 http://ftpmaster.internal/ubuntu plucky/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 200s Get:263 http://ftpmaster.internal/ubuntu plucky/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 200s Get:264 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 200s Get:265 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB] 200s Get:266 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-0t64 amd64 3.24.48-3ubuntu1 [3169 kB] 200s Get:267 http://ftpmaster.internal/ubuntu plucky/main amd64 libnotify4 amd64 0.8.3-1build2 [25.6 kB] 200s Get:268 http://ftpmaster.internal/ubuntu plucky/main amd64 libxtst6 amd64 2:1.2.5-1 [13.0 kB] 200s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 libwxgtk3.2-1t64 amd64 3.2.6+dfsg-2ubuntu1 [4967 kB] 201s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.6+dfsg-2ubuntu1 [53.9 kB] 201s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wxgtk4.0 amd64 4.2.2+dfsg-3 [10.5 MB] 201s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build2 [44.9 kB] 202s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-4.1ubuntu1 [242 kB] 202s Get:274 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.1ubuntu1 [278 kB] 202s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-timer1.83.0 amd64 1.83.0-4.1ubuntu1 [241 kB] 202s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssm2 amd64 1.4.0-2build1 [87.7 kB] 202s Get:277 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-cctbx amd64 2024.10+ds2+~3.22.1+ds1-4build1 [32.2 MB] 204s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [8248 kB] 204s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8 [3112 kB] 205s Get:280 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-psutil amd64 5.9.8-2build3 [196 kB] 205s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fabio amd64 2024.4.0-2build1 [925 kB] 205s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-numexpr amd64 2.10.2-1build1 [133 kB] 205s Get:283 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-mako all 1.3.8-2 [63.5 kB] 205s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 205s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpocl2-common all 6.0-4 [82.8 kB] 205s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 205s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpocl2t64 amd64 6.0-4 [9731 kB] 206s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 pocl-opencl-icd amd64 6.0-4 [7166 B] 206s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytools all 2024.1.14-1 [68.4 kB] 206s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyopencl amd64 2024.1-3 [780 kB] 206s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5svg5 amd64 5.15.15-2 [153 kB] 206s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsvg amd64 5.15.11+dfsg-1build2 [30.1 kB] 206s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-comm all 0.2.1-1 [7016 B] 206s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 libbabeltrace1 amd64 1.5.11-4build1 [185 kB] 207s Get:295 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 207s Get:296 http://ftpmaster.internal/ubuntu plucky/main amd64 libipt2 amd64 2.1.2-1 [58.9 kB] 207s Get:297 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight-common all 3.1.9-4.3build1 [64.2 kB] 207s Get:298 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight4t64 amd64 3.1.9-4.3build1 [258 kB] 207s Get:299 http://ftpmaster.internal/ubuntu plucky/main amd64 gdb amd64 16.2-1ubuntu1 [8934 kB] 207s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu3 [150 kB] 208s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-debugpy amd64 1.8.8+ds-2ubuntu1 [1145 kB] 208s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-parso all 0.8.4-1 [67.6 kB] 208s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-typeshed all 0.0~git20241223.ea91db2-1 [1548 kB] 208s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB] 208s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 208s Get:306 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 208s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-prompt-toolkit all 3.0.50-1 [257 kB] 208s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-asttokens all 3.0.0-1 [20.4 kB] 208s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-executing all 2.2.0-0.1 [25.0 kB] 208s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pure-eval all 0.2.3-1 [11.4 kB] 209s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB] 209s Get:312 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ptyprocess all 0.7.0-6 [14.8 kB] 209s Get:313 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pexpect all 4.9-3 [48.1 kB] 209s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipython all 8.30.0-2 [569 kB] 209s Get:315 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tornado amd64 6.4.2-1 [299 kB] 209s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 209s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 209s Get:318 http://ftpmaster.internal/ubuntu plucky/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 209s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 209s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-zmq amd64 26.2.1-1 [226 kB] 209s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-client all 8.6.3-2 [78.5 kB] 210s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nest-asyncio all 1.5.4-1 [6256 B] 210s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipykernel all 6.29.5-2 [82.7 kB] 210s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5charts5 amd64 5.15.15-2 [519 kB] 210s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtchart amd64 5.15.7+dfsg-1 [147 kB] 210s Get:326 http://ftpmaster.internal/ubuntu plucky/main amd64 libasyncns0 amd64 0.8-6build4 [11.3 kB] 210s Get:327 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 210s Get:328 http://ftpmaster.internal/ubuntu plucky/main amd64 libflac12t64 amd64 1.4.3+ds-4 [268 kB] 210s Get:329 http://ftpmaster.internal/ubuntu plucky/main amd64 libmp3lame0 amd64 3.100-6build1 [142 kB] 210s Get:330 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpg123-0t64 amd64 1.32.10-1 [191 kB] 210s Get:331 http://ftpmaster.internal/ubuntu plucky/main amd64 libopus0 amd64 1.5.2-2 [2913 kB] 211s Get:332 http://ftpmaster.internal/ubuntu plucky/main amd64 libvorbis0a amd64 1.3.7-2 [98.4 kB] 211s Get:333 http://ftpmaster.internal/ubuntu plucky/main amd64 libvorbisenc2 amd64 1.3.7-2 [80.8 kB] 211s Get:334 http://ftpmaster.internal/ubuntu plucky/main amd64 libsndfile1 amd64 1.2.2-2 [275 kB] 211s Get:335 http://ftpmaster.internal/ubuntu plucky/main amd64 libpulse0 amd64 1:17.0+dfsg1-2ubuntu1 [302 kB] 211s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5multimedia5 amd64 5.15.15-2 [308 kB] 211s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5multimediawidgets5 amd64 5.15.15-2 [42.2 kB] 211s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtmultimedia amd64 5.15.11+dfsg-1build2 [229 kB] 212s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5positioningquick5 amd64 5.15.15+dfsg-3 [43.5 kB] 212s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5location5 amd64 5.15.15+dfsg-3 [750 kB] 212s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtpositioning amd64 5.15.11+dfsg-1build2 [153 kB] 212s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5quickwidgets5 amd64 5.15.15+dfsg-3 [39.1 kB] 212s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtquick amd64 5.15.11+dfsg-1build2 [394 kB] 212s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5remoteobjects5 amd64 5.15.15-2 [210 kB] 212s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtremoteobjects amd64 5.15.11+dfsg-1build2 [32.9 kB] 212s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsensors amd64 5.15.11+dfsg-1build2 [56.1 kB] 212s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5serialport5 amd64 5.15.15-2 [37.6 kB] 212s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtserialport amd64 5.15.11+dfsg-1build2 [28.4 kB] 212s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsql amd64 5.15.11+dfsg-1build2 [90.0 kB] 213s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5texttospeech5 amd64 5.15.15-2 [22.1 kB] 213s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qttexttospeech amd64 5.15.11+dfsg-1build2 [17.9 kB] 213s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebchannel amd64 5.15.11+dfsg-1build2 [15.2 kB] 213s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebkit amd64 5.15.11+dfsg-1build2 [111 kB] 213s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5websockets5 amd64 5.15.15-2 [62.1 kB] 213s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebsockets amd64 5.15.11+dfsg-1build2 [27.2 kB] 213s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xmlpatterns5 amd64 5.15.15-2 [934 kB] 213s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtxmlpatterns amd64 5.15.11+dfsg-1build2 [44.8 kB] 213s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-qtpy all 2.4.2-4 [57.3 kB] 213s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-qtconsole all 5.6.1-4 [84.7 kB] 213s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pooch all 1.8.2-1 [49.9 kB] 214s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-silx amd64 2.1.2+dfsg-1build2 [3297 kB] 214s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyfai amd64 2024.05-3build2 [4908 kB] 215s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-2 [205 kB] 215s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 215s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-7build1 [6872 kB] 217s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-7build1 [2258 kB] 217s Get:367 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 217s Get:368 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dials amd64 3.22.1+dfsg3-1 [4240 kB] 218s Get:369 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 dials amd64 3.22.1+dfsg3-1 [7966 B] 218s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 218s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 218s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB] 218s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dials-data all 2.4.0-2 [110 kB] 218s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-execnet all 2.1.1-1 [33.4 kB] 218s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-mock all 3.14.0-2 [11.7 kB] 218s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] 219s Preconfiguring packages ... 219s Fetched 330 MB in 51s (6465 kB/s) 219s Selecting previously unselected package python3.12-minimal. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 219s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_amd64.deb ... 219s Unpacking python3.12-minimal (3.12.9-1) ... 219s Selecting previously unselected package fonts-lato. 219s Preparing to unpack .../001-fonts-lato_2.015-1_all.deb ... 219s Unpacking fonts-lato (2.015-1) ... 220s Selecting previously unselected package libdebuginfod-common. 220s Preparing to unpack .../002-libdebuginfod-common_0.192-4_all.deb ... 220s Unpacking libdebuginfod-common (0.192-4) ... 220s Selecting previously unselected package libgstreamer1.0-0:amd64. 220s Preparing to unpack .../003-libgstreamer1.0-0_1.25.50-1_amd64.deb ... 220s Unpacking libgstreamer1.0-0:amd64 (1.25.50-1) ... 220s Selecting previously unselected package liborc-0.4-0t64:amd64. 220s Preparing to unpack .../004-liborc-0.4-0t64_1%3a0.4.40-1_amd64.deb ... 220s Unpacking liborc-0.4-0t64:amd64 (1:0.4.40-1) ... 220s Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. 220s Preparing to unpack .../005-libgstreamer-plugins-base1.0-0_1.25.50-1_amd64.deb ... 220s Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.25.50-1) ... 220s Selecting previously unselected package libhyphen0:amd64. 220s Preparing to unpack .../006-libhyphen0_2.8.8-7build3_amd64.deb ... 220s Unpacking libhyphen0:amd64 (2.8.8-7build3) ... 220s Selecting previously unselected package libjpeg-turbo8:amd64. 220s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 220s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 220s Selecting previously unselected package libjpeg8:amd64. 220s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_amd64.deb ... 220s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 220s Selecting previously unselected package libdouble-conversion3:amd64. 220s Preparing to unpack .../009-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 220s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 220s Selecting previously unselected package libpcre2-16-0:amd64. 220s Preparing to unpack .../010-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 220s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 220s Selecting previously unselected package libqt5core5t64:amd64. 220s Preparing to unpack .../011-libqt5core5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 220s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 220s Selecting previously unselected package fonts-dejavu-mono. 220s Preparing to unpack .../012-fonts-dejavu-mono_2.37-8_all.deb ... 220s Unpacking fonts-dejavu-mono (2.37-8) ... 220s Selecting previously unselected package fonts-dejavu-core. 220s Preparing to unpack .../013-fonts-dejavu-core_2.37-8_all.deb ... 220s Unpacking fonts-dejavu-core (2.37-8) ... 220s Selecting previously unselected package fontconfig-config. 220s Preparing to unpack .../014-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 220s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 220s Selecting previously unselected package libfontconfig1:amd64. 220s Preparing to unpack .../015-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 220s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 220s Selecting previously unselected package fontconfig. 220s Preparing to unpack .../016-fontconfig_2.15.0-2ubuntu1_amd64.deb ... 220s Unpacking fontconfig (2.15.0-2ubuntu1) ... 220s Selecting previously unselected package libglvnd0:amd64. 220s Preparing to unpack .../017-libglvnd0_1.7.0-1build1_amd64.deb ... 220s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 220s Selecting previously unselected package libwayland-server0:amd64. 220s Preparing to unpack .../018-libwayland-server0_1.23.1-1_amd64.deb ... 220s Unpacking libwayland-server0:amd64 (1.23.1-1) ... 220s Selecting previously unselected package libpciaccess0:amd64. 220s Preparing to unpack .../019-libpciaccess0_0.17-3build1_amd64.deb ... 220s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 220s Selecting previously unselected package libdrm-intel1:amd64. 220s Preparing to unpack .../020-libdrm-intel1_2.4.123-1_amd64.deb ... 220s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 220s Selecting previously unselected package libdrm-radeon1:amd64. 220s Preparing to unpack .../021-libdrm-radeon1_2.4.123-1_amd64.deb ... 220s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 221s Selecting previously unselected package libglapi-mesa:amd64. 221s Preparing to unpack .../022-libglapi-mesa_24.3.4-3ubuntu1_amd64.deb ... 221s Unpacking libglapi-mesa:amd64 (24.3.4-3ubuntu1) ... 221s Selecting previously unselected package libx11-xcb1:amd64. 221s Preparing to unpack .../023-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 221s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 221s Selecting previously unselected package libxcb-dri3-0:amd64. 221s Preparing to unpack .../024-libxcb-dri3-0_1.17.0-2_amd64.deb ... 221s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 221s Selecting previously unselected package libxcb-present0:amd64. 221s Preparing to unpack .../025-libxcb-present0_1.17.0-2_amd64.deb ... 221s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 221s Selecting previously unselected package libxcb-randr0:amd64. 221s Preparing to unpack .../026-libxcb-randr0_1.17.0-2_amd64.deb ... 221s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 221s Selecting previously unselected package libxcb-sync1:amd64. 221s Preparing to unpack .../027-libxcb-sync1_1.17.0-2_amd64.deb ... 221s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 221s Selecting previously unselected package libxcb-xfixes0:amd64. 221s Preparing to unpack .../028-libxcb-xfixes0_1.17.0-2_amd64.deb ... 221s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 221s Selecting previously unselected package libxshmfence1:amd64. 221s Preparing to unpack .../029-libxshmfence1_1.3-1build5_amd64.deb ... 221s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 221s Selecting previously unselected package mesa-libgallium:amd64. 221s Preparing to unpack .../030-mesa-libgallium_24.3.4-3ubuntu1_amd64.deb ... 221s Unpacking mesa-libgallium:amd64 (24.3.4-3ubuntu1) ... 221s Selecting previously unselected package libgbm1:amd64. 221s Preparing to unpack .../031-libgbm1_24.3.4-3ubuntu1_amd64.deb ... 221s Unpacking libgbm1:amd64 (24.3.4-3ubuntu1) ... 221s Selecting previously unselected package libwayland-client0:amd64. 221s Preparing to unpack .../032-libwayland-client0_1.23.1-1_amd64.deb ... 221s Unpacking libwayland-client0:amd64 (1.23.1-1) ... 221s Selecting previously unselected package libxcb-shm0:amd64. 221s Preparing to unpack .../033-libxcb-shm0_1.17.0-2_amd64.deb ... 221s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 221s Selecting previously unselected package libegl-mesa0:amd64. 221s Preparing to unpack .../034-libegl-mesa0_24.3.4-3ubuntu1_amd64.deb ... 221s Unpacking libegl-mesa0:amd64 (24.3.4-3ubuntu1) ... 221s Selecting previously unselected package libegl1:amd64. 221s Preparing to unpack .../035-libegl1_1.7.0-1build1_amd64.deb ... 221s Unpacking libegl1:amd64 (1.7.0-1build1) ... 221s Selecting previously unselected package libxcb-glx0:amd64. 221s Preparing to unpack .../036-libxcb-glx0_1.17.0-2_amd64.deb ... 221s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 221s Selecting previously unselected package libxxf86vm1:amd64. 221s Preparing to unpack .../037-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 221s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 221s Selecting previously unselected package libvulkan1:amd64. 221s Preparing to unpack .../038-libvulkan1_1.4.304.0-1_amd64.deb ... 221s Unpacking libvulkan1:amd64 (1.4.304.0-1) ... 221s Selecting previously unselected package libgl1-mesa-dri:amd64. 221s Preparing to unpack .../039-libgl1-mesa-dri_24.3.4-3ubuntu1_amd64.deb ... 221s Unpacking libgl1-mesa-dri:amd64 (24.3.4-3ubuntu1) ... 221s Selecting previously unselected package libglx-mesa0:amd64. 221s Preparing to unpack .../040-libglx-mesa0_24.3.4-3ubuntu1_amd64.deb ... 221s Unpacking libglx-mesa0:amd64 (24.3.4-3ubuntu1) ... 221s Selecting previously unselected package libglx0:amd64. 221s Preparing to unpack .../041-libglx0_1.7.0-1build1_amd64.deb ... 221s Unpacking libglx0:amd64 (1.7.0-1build1) ... 221s Selecting previously unselected package libgl1:amd64. 221s Preparing to unpack .../042-libgl1_1.7.0-1build1_amd64.deb ... 221s Unpacking libgl1:amd64 (1.7.0-1build1) ... 221s Selecting previously unselected package libgraphite2-3:amd64. 221s Preparing to unpack .../043-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 221s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 221s Selecting previously unselected package libharfbuzz0b:amd64. 221s Preparing to unpack .../044-libharfbuzz0b_10.2.0-1_amd64.deb ... 221s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 221s Selecting previously unselected package x11-common. 221s Preparing to unpack .../045-x11-common_1%3a7.7+23ubuntu3_all.deb ... 221s Unpacking x11-common (1:7.7+23ubuntu3) ... 221s Selecting previously unselected package libice6:amd64. 221s Preparing to unpack .../046-libice6_2%3a1.1.1-1_amd64.deb ... 221s Unpacking libice6:amd64 (2:1.1.1-1) ... 221s Selecting previously unselected package libmtdev1t64:amd64. 221s Preparing to unpack .../047-libmtdev1t64_1.1.7-1_amd64.deb ... 221s Unpacking libmtdev1t64:amd64 (1.1.7-1) ... 221s Selecting previously unselected package libwacom-common. 221s Preparing to unpack .../048-libwacom-common_2.14.0-1_all.deb ... 221s Unpacking libwacom-common (2.14.0-1) ... 221s Selecting previously unselected package libwacom9:amd64. 222s Preparing to unpack .../049-libwacom9_2.14.0-1_amd64.deb ... 222s Unpacking libwacom9:amd64 (2.14.0-1) ... 222s Selecting previously unselected package libinput-bin. 222s Preparing to unpack .../050-libinput-bin_1.27.1-1_amd64.deb ... 222s Unpacking libinput-bin (1.27.1-1) ... 222s Selecting previously unselected package libinput10:amd64. 222s Preparing to unpack .../051-libinput10_1.27.1-1_amd64.deb ... 222s Unpacking libinput10:amd64 (1.27.1-1) ... 222s Selecting previously unselected package libmd4c0:amd64. 222s Preparing to unpack .../052-libmd4c0_0.5.2-2_amd64.deb ... 222s Unpacking libmd4c0:amd64 (0.5.2-2) ... 222s Selecting previously unselected package libqt5dbus5t64:amd64. 222s Preparing to unpack .../053-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 222s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 222s Selecting previously unselected package libqt5network5t64:amd64. 222s Preparing to unpack .../054-libqt5network5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 222s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 222s Selecting previously unselected package libsm6:amd64. 222s Preparing to unpack .../055-libsm6_2%3a1.2.4-1_amd64.deb ... 222s Unpacking libsm6:amd64 (2:1.2.4-1) ... 222s Selecting previously unselected package libxcb-icccm4:amd64. 222s Preparing to unpack .../056-libxcb-icccm4_0.4.2-1_amd64.deb ... 222s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 222s Selecting previously unselected package libxcb-util1:amd64. 222s Preparing to unpack .../057-libxcb-util1_0.4.1-1_amd64.deb ... 222s Unpacking libxcb-util1:amd64 (0.4.1-1) ... 222s Selecting previously unselected package libxcb-image0:amd64. 222s Preparing to unpack .../058-libxcb-image0_0.4.0-2build1_amd64.deb ... 222s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 222s Selecting previously unselected package libxcb-keysyms1:amd64. 222s Preparing to unpack .../059-libxcb-keysyms1_0.4.1-1_amd64.deb ... 222s Unpacking libxcb-keysyms1:amd64 (0.4.1-1) ... 222s Selecting previously unselected package libxcb-render0:amd64. 222s Preparing to unpack .../060-libxcb-render0_1.17.0-2_amd64.deb ... 222s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 222s Selecting previously unselected package libxcb-render-util0:amd64. 222s Preparing to unpack .../061-libxcb-render-util0_0.3.10-1_amd64.deb ... 222s Unpacking libxcb-render-util0:amd64 (0.3.10-1) ... 222s Selecting previously unselected package libxcb-shape0:amd64. 222s Preparing to unpack .../062-libxcb-shape0_1.17.0-2_amd64.deb ... 222s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 222s Selecting previously unselected package libxcb-xinerama0:amd64. 222s Preparing to unpack .../063-libxcb-xinerama0_1.17.0-2_amd64.deb ... 222s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 222s Selecting previously unselected package libxcb-xinput0:amd64. 222s Preparing to unpack .../064-libxcb-xinput0_1.17.0-2_amd64.deb ... 222s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ... 222s Selecting previously unselected package libxcb-xkb1:amd64. 222s Preparing to unpack .../065-libxcb-xkb1_1.17.0-2_amd64.deb ... 222s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ... 222s Selecting previously unselected package libxkbcommon-x11-0:amd64. 222s Preparing to unpack .../066-libxkbcommon-x11-0_1.7.0-2_amd64.deb ... 222s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ... 222s Selecting previously unselected package libxrender1:amd64. 222s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 222s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 222s Selecting previously unselected package libqt5gui5t64:amd64. 222s Preparing to unpack .../068-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 222s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 222s Selecting previously unselected package libqt5positioning5:amd64. 222s Preparing to unpack .../069-libqt5positioning5_5.15.15+dfsg-3_amd64.deb ... 222s Unpacking libqt5positioning5:amd64 (5.15.15+dfsg-3) ... 222s Selecting previously unselected package libavahi-common-data:amd64. 222s Preparing to unpack .../070-libavahi-common-data_0.8-14ubuntu1_amd64.deb ... 222s Unpacking libavahi-common-data:amd64 (0.8-14ubuntu1) ... 222s Selecting previously unselected package libavahi-common3:amd64. 222s Preparing to unpack .../071-libavahi-common3_0.8-14ubuntu1_amd64.deb ... 222s Unpacking libavahi-common3:amd64 (0.8-14ubuntu1) ... 222s Selecting previously unselected package libavahi-client3:amd64. 222s Preparing to unpack .../072-libavahi-client3_0.8-14ubuntu1_amd64.deb ... 222s Unpacking libavahi-client3:amd64 (0.8-14ubuntu1) ... 222s Selecting previously unselected package libcups2t64:amd64. 222s Preparing to unpack .../073-libcups2t64_2.4.11-0ubuntu2_amd64.deb ... 222s Unpacking libcups2t64:amd64 (2.4.11-0ubuntu2) ... 222s Selecting previously unselected package libqt5widgets5t64:amd64. 222s Preparing to unpack .../074-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 222s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 222s Selecting previously unselected package libqt5printsupport5t64:amd64. 222s Preparing to unpack .../075-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 222s Unpacking libqt5printsupport5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 222s Selecting previously unselected package libqt5qml5:amd64. 222s Preparing to unpack .../076-libqt5qml5_5.15.15+dfsg-3_amd64.deb ... 222s Unpacking libqt5qml5:amd64 (5.15.15+dfsg-3) ... 222s Selecting previously unselected package libqt5qmlmodels5:amd64. 222s Preparing to unpack .../077-libqt5qmlmodels5_5.15.15+dfsg-3_amd64.deb ... 222s Unpacking libqt5qmlmodels5:amd64 (5.15.15+dfsg-3) ... 222s Selecting previously unselected package libqt5quick5:amd64. 223s Preparing to unpack .../078-libqt5quick5_5.15.15+dfsg-3_amd64.deb ... 223s Unpacking libqt5quick5:amd64 (5.15.15+dfsg-3) ... 223s Selecting previously unselected package libqt5sensors5:amd64. 223s Preparing to unpack .../079-libqt5sensors5_5.15.15-2_amd64.deb ... 223s Unpacking libqt5sensors5:amd64 (5.15.15-2) ... 223s Selecting previously unselected package libqt5webchannel5:amd64. 223s Preparing to unpack .../080-libqt5webchannel5_5.15.15-2_amd64.deb ... 223s Unpacking libqt5webchannel5:amd64 (5.15.15-2) ... 223s Selecting previously unselected package libsharpyuv0:amd64. 223s Preparing to unpack .../081-libsharpyuv0_1.5.0-0.1_amd64.deb ... 223s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 223s Selecting previously unselected package libwebp7:amd64. 223s Preparing to unpack .../082-libwebp7_1.5.0-0.1_amd64.deb ... 223s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 223s Selecting previously unselected package libwoff1:amd64. 223s Preparing to unpack .../083-libwoff1_1.0.2-2build1_amd64.deb ... 223s Unpacking libwoff1:amd64 (1.0.2-2build1) ... 223s Selecting previously unselected package libxslt1.1:amd64. 223s Preparing to unpack .../084-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ... 223s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 223s Selecting previously unselected package libqt5webkit5:amd64. 223s Preparing to unpack .../085-libqt5webkit5_5.212.0~alpha4-42_amd64.deb ... 223s Unpacking libqt5webkit5:amd64 (5.212.0~alpha4-42) ... 223s Selecting previously unselected package python3.12. 223s Preparing to unpack .../086-python3.12_3.12.9-1_amd64.deb ... 223s Unpacking python3.12 (3.12.9-1) ... 223s Selecting previously unselected package libgdk-pixbuf2.0-common. 223s Preparing to unpack .../087-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 223s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 223s Selecting previously unselected package libdeflate0:amd64. 223s Preparing to unpack .../088-libdeflate0_1.23-1_amd64.deb ... 223s Unpacking libdeflate0:amd64 (1.23-1) ... 223s Selecting previously unselected package libjbig0:amd64. 223s Preparing to unpack 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diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 223s Unpacking gtk-update-icon-cache (4.17.4+ds-4) ... 223s Selecting previously unselected package hicolor-icon-theme. 223s Preparing to unpack .../094-hicolor-icon-theme_0.18-2_all.deb ... 223s Unpacking hicolor-icon-theme (0.18-2) ... 223s Selecting previously unselected package adwaita-icon-theme. 223s Preparing to unpack .../095-adwaita-icon-theme_48~beta-3_all.deb ... 223s Unpacking adwaita-icon-theme (48~beta-3) ... 224s Selecting previously unselected package at-spi2-common. 224s Preparing to unpack .../096-at-spi2-common_2.55.2-1_all.deb ... 224s Unpacking at-spi2-common (2.55.2-1) ... 224s Selecting previously unselected package libtcl8.6:amd64. 224s Preparing to unpack .../097-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 224s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 224s Selecting previously unselected package libxft2:amd64. 224s Preparing to unpack .../098-libxft2_2.3.6-1build1_amd64.deb ... 224s Unpacking libxft2:amd64 (2.3.6-1build1) ... 224s Selecting previously unselected package libxss1:amd64. 224s Preparing to unpack .../099-libxss1_1%3a1.2.3-1build3_amd64.deb ... 224s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 224s Selecting previously unselected package libtk8.6:amd64. 224s Preparing to unpack .../100-libtk8.6_8.6.16-1_amd64.deb ... 224s Unpacking libtk8.6:amd64 (8.6.16-1) ... 224s Selecting previously unselected package tk8.6-blt2.5. 224s Preparing to unpack .../101-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 224s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 224s Selecting previously unselected package blt. 224s Preparing to unpack .../102-blt_2.5.3+dfsg-7build1_amd64.deb ... 224s Unpacking blt (2.5.3+dfsg-7build1) ... 224s Selecting previously unselected package libgomp1:amd64. 224s Preparing to unpack .../103-libgomp1_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking libgomp1:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package libitm1:amd64. 224s Preparing to unpack .../104-libitm1_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking libitm1:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package libasan8:amd64. 224s Preparing to unpack .../105-libasan8_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking libasan8:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package liblsan0:amd64. 224s Preparing to unpack .../106-liblsan0_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking liblsan0:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package libtsan2:amd64. 224s Preparing to unpack .../107-libtsan2_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking libtsan2:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package libubsan1:amd64. 224s Preparing to unpack .../108-libubsan1_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking libubsan1:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package libhwasan0:amd64. 224s Preparing to unpack .../109-libhwasan0_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking libhwasan0:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package libquadmath0:amd64. 224s Preparing to unpack .../110-libquadmath0_15-20250213-1ubuntu1_amd64.deb ... 224s Unpacking libquadmath0:amd64 (15-20250213-1ubuntu1) ... 224s Selecting previously unselected package libgcc-14-dev:amd64. 224s Preparing to unpack .../111-libgcc-14-dev_14.2.0-17ubuntu1_amd64.deb ... 224s Unpacking libgcc-14-dev:amd64 (14.2.0-17ubuntu1) ... 224s Selecting previously unselected package libstdc++-14-dev:amd64. 224s Preparing to unpack .../112-libstdc++-14-dev_14.2.0-17ubuntu1_amd64.deb ... 224s Unpacking libstdc++-14-dev:amd64 (14.2.0-17ubuntu1) ... 224s Selecting previously unselected package libgc1:amd64. 225s Preparing to unpack .../113-libgc1_1%3a8.2.8-1_amd64.deb ... 225s Unpacking libgc1:amd64 (1:8.2.8-1) ... 225s Selecting previously unselected package libobjc4:amd64. 225s Preparing to unpack .../114-libobjc4_15-20250213-1ubuntu1_amd64.deb ... 225s Unpacking libobjc4:amd64 (15-20250213-1ubuntu1) ... 225s Selecting previously unselected package libobjc-14-dev:amd64. 225s Preparing to unpack .../115-libobjc-14-dev_14.2.0-17ubuntu1_amd64.deb ... 225s Unpacking libobjc-14-dev:amd64 (14.2.0-17ubuntu1) ... 225s Selecting previously unselected package libclang-common-18-dev:amd64. 225s Preparing to unpack .../116-libclang-common-18-dev_1%3a18.1.8-15_amd64.deb ... 225s Unpacking libclang-common-18-dev:amd64 (1:18.1.8-15) ... 225s Selecting previously unselected package llvm-18-linker-tools. 225s Preparing to unpack .../117-llvm-18-linker-tools_1%3a18.1.8-15_amd64.deb ... 225s Unpacking llvm-18-linker-tools (1:18.1.8-15) ... 225s Selecting previously unselected package libclang1-18. 225s Preparing to unpack .../118-libclang1-18_1%3a18.1.8-15_amd64.deb ... 225s Unpacking libclang1-18 (1:18.1.8-15) ... 225s Selecting previously unselected package clang-18. 225s Preparing to unpack .../119-clang-18_1%3a18.1.8-15_amd64.deb ... 225s Unpacking clang-18 (1:18.1.8-15) ... 225s Selecting previously unselected package libdconf1:amd64. 225s Preparing to unpack .../120-libdconf1_0.40.0-5_amd64.deb ... 225s Unpacking libdconf1:amd64 (0.40.0-5) ... 225s Selecting previously unselected package dconf-service. 225s Preparing to unpack .../121-dconf-service_0.40.0-5_amd64.deb ... 225s Unpacking dconf-service (0.40.0-5) ... 225s Selecting previously unselected package dconf-gsettings-backend:amd64. 225s Preparing to unpack .../122-dconf-gsettings-backend_0.40.0-5_amd64.deb ... 225s Unpacking dconf-gsettings-backend:amd64 (0.40.0-5) ... 225s Selecting previously unselected package fonts-glyphicons-halflings. 225s Preparing to unpack .../123-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 225s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 225s Selecting previously unselected package libjs-bootstrap. 225s Preparing to unpack .../124-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 225s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 225s Selecting previously unselected package libjs-jquery. 225s Preparing to unpack .../125-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 225s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 225s Selecting previously unselected package fonts-katex. 225s Preparing to unpack .../126-fonts-katex_0.16.10+~cs6.1.0-2_all.deb ... 225s Unpacking fonts-katex (0.16.10+~cs6.1.0-2) ... 225s Selecting previously unselected package libjs-katex. 225s Preparing to unpack .../127-libjs-katex_0.16.10+~cs6.1.0-2_all.deb ... 225s Unpacking libjs-katex (0.16.10+~cs6.1.0-2) ... 225s Selecting previously unselected package fonts-mathjax. 225s Preparing to unpack .../128-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 225s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 225s Selecting previously unselected package libjs-mathjax. 225s Preparing to unpack .../129-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 225s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 226s Selecting previously unselected package python3-pytz. 226s Preparing to unpack .../130-python3-pytz_2025.1-3_all.deb ... 226s Unpacking python3-pytz (2025.1-3) ... 226s Selecting previously unselected package python3-tz. 226s Preparing to unpack .../131-python3-tz_2025.1-3_all.deb ... 226s Unpacking python3-tz (2025.1-3) ... 226s Selecting previously unselected package python3-decorator. 226s Preparing to unpack .../132-python3-decorator_5.1.1-5_all.deb ... 226s Unpacking python3-decorator (5.1.1-5) ... 226s Selecting previously unselected package python3-fastjsonschema. 226s Preparing to unpack .../133-python3-fastjsonschema_2.21.1-1_all.deb ... 226s Unpacking python3-fastjsonschema (2.21.1-1) ... 226s Selecting previously unselected package python3-platformdirs. 226s Preparing to unpack .../134-python3-platformdirs_4.3.6-1_all.deb ... 226s Unpacking python3-platformdirs (4.3.6-1) ... 226s Selecting previously unselected package python3-traitlets. 226s Preparing to unpack .../135-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 226s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 226s Selecting previously unselected package python3-jupyter-core. 226s Preparing to unpack .../136-python3-jupyter-core_5.7.2-5_all.deb ... 226s Unpacking python3-jupyter-core (5.7.2-5) ... 226s Selecting previously unselected package python3-nbformat. 226s Preparing to unpack .../137-python3-nbformat_5.9.1-1_all.deb ... 226s Unpacking python3-nbformat (5.9.1-1) ... 226s Selecting previously unselected package python3-tenacity. 226s Preparing to unpack .../138-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 226s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 226s Selecting previously unselected package python3-plotly. 226s Preparing to unpack .../139-python3-plotly_5.20.0+dfsg-1_all.deb ... 226s Unpacking python3-plotly (5.20.0+dfsg-1) ... 228s Selecting previously unselected package libann-cctbx0. 228s Preparing to unpack .../140-libann-cctbx0_1.1.2+doc-9build1_amd64.deb ... 228s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ... 228s Selecting previously unselected package libann-cctbx-dev. 228s Preparing to unpack .../141-libann-cctbx-dev_1.1.2+doc-9build1_amd64.deb ... 228s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ... 228s Selecting previously unselected package libboost1.83-dev:amd64. 228s Preparing to unpack .../142-libboost1.83-dev_1.83.0-4.1ubuntu1_amd64.deb ... 228s Unpacking libboost1.83-dev:amd64 (1.83.0-4.1ubuntu1) ... 230s Selecting previously unselected package libboost-python1.83.0. 230s Preparing to unpack .../143-libboost-python1.83.0_1.83.0-4.1ubuntu1_amd64.deb ... 230s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu1) ... 230s Selecting previously unselected package libexpat1-dev:amd64. 230s Preparing to unpack .../144-libexpat1-dev_2.6.4-1_amd64.deb ... 230s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 230s Selecting previously unselected package zlib1g-dev:amd64. 230s Preparing to unpack .../145-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 230s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 230s Selecting previously unselected package libpython3.13-dev:amd64. 230s Preparing to unpack .../146-libpython3.13-dev_3.13.2-1_amd64.deb ... 230s Unpacking libpython3.13-dev:amd64 (3.13.2-1) ... 230s Selecting previously unselected package libpython3-dev:amd64. 230s Preparing to unpack .../147-libpython3-dev_3.13.1-1~exp2_amd64.deb ... 230s Unpacking libpython3-dev:amd64 (3.13.1-1~exp2) ... 230s Selecting previously unselected package python3.13-dev. 230s Preparing to unpack .../148-python3.13-dev_3.13.2-1_amd64.deb ... 230s Unpacking python3.13-dev (3.13.2-1) ... 230s Selecting previously unselected package libjs-underscore. 230s Preparing to unpack .../149-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 230s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 230s Selecting previously unselected package libjs-sphinxdoc. 230s Preparing to unpack .../150-libjs-sphinxdoc_8.1.3-4_all.deb ... 230s Unpacking libjs-sphinxdoc (8.1.3-4) ... 230s Selecting previously unselected package python3-dev. 230s Preparing to unpack .../151-python3-dev_3.13.1-1~exp2_amd64.deb ... 230s Unpacking python3-dev (3.13.1-1~exp2) ... 230s Selecting previously unselected package libboost-python1.83-dev. 230s Preparing to unpack .../152-libboost-python1.83-dev_1.83.0-4.1ubuntu1_amd64.deb ... 230s Unpacking libboost-python1.83-dev (1.83.0-4.1ubuntu1) ... 231s Selecting previously unselected package libboost-python-dev. 231s Preparing to unpack .../153-libboost-python-dev_1.83.0.2ubuntu1_amd64.deb ... 231s Unpacking libboost-python-dev (1.83.0.2ubuntu1) ... 231s Selecting previously unselected package libccp4-data. 231s Preparing to unpack .../154-libccp4-data_8.0.0-4_all.deb ... 231s Unpacking libccp4-data (8.0.0-4) ... 231s Selecting previously unselected package libccp4c0t64:amd64. 231s Preparing to unpack .../155-libccp4c0t64_8.0.0-4_amd64.deb ... 231s Unpacking libccp4c0t64:amd64 (8.0.0-4) ... 231s Selecting previously unselected package libgfortran5:amd64. 231s Preparing to unpack .../156-libgfortran5_15-20250213-1ubuntu1_amd64.deb ... 231s Unpacking libgfortran5:amd64 (15-20250213-1ubuntu1) ... 231s Selecting previously unselected package libmmdb2-0:amd64. 231s Preparing to unpack .../157-libmmdb2-0_2.0.22-1_amd64.deb ... 231s Unpacking libmmdb2-0:amd64 (2.0.22-1) ... 231s Selecting previously unselected package libccp4f0t64:amd64. 231s Preparing to unpack .../158-libccp4f0t64_8.0.0-4_amd64.deb ... 231s Unpacking libccp4f0t64:amd64 (8.0.0-4) ... 231s Selecting previously unselected package libccp4-dev:amd64. 231s Preparing to unpack .../159-libccp4-dev_8.0.0-4_amd64.deb ... 231s Unpacking libccp4-dev:amd64 (8.0.0-4) ... 231s Selecting previously unselected package libaec0:amd64. 231s Preparing to unpack .../160-libaec0_1.1.3-1_amd64.deb ... 231s Unpacking libaec0:amd64 (1.1.3-1) ... 231s Selecting previously unselected package libsz2:amd64. 231s Preparing to unpack .../161-libsz2_1.1.3-1_amd64.deb ... 231s Unpacking libsz2:amd64 (1.1.3-1) ... 231s Selecting previously unselected package libhdf5-310:amd64. 231s Preparing to unpack .../162-libhdf5-310_1.14.5+repack-3_amd64.deb ... 231s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 231s Selecting previously unselected package libcbf1t64:amd64. 231s Preparing to unpack .../163-libcbf1t64_0.9.7+dfsg1-4build2_amd64.deb ... 231s Unpacking libcbf1t64:amd64 (0.9.7+dfsg1-4build2) ... 231s Selecting previously unselected package libcctbx0. 231s Preparing to unpack .../164-libcctbx0_2024.10+ds2+~3.22.1+ds1-4build1_amd64.deb ... 231s Unpacking libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build1) ... 231s Selecting previously unselected package libcctbx-dev. 231s Preparing to unpack .../165-libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4build1_amd64.deb ... 231s Unpacking libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build1) ... 231s Selecting previously unselected package python3-legacy-cgi. 231s Preparing to unpack .../166-python3-legacy-cgi_2.6.1-2_all.deb ... 231s Unpacking python3-legacy-cgi (2.6.1-2) ... 231s Selecting previously unselected package python3-pycbf. 231s Preparing to unpack .../167-python3-pycbf_0.9.7+dfsg1-4build2_amd64.deb ... 231s Unpacking python3-pycbf (0.9.7+dfsg1-4build2) ... 231s Selecting previously unselected package libblas3:amd64. 231s Preparing to unpack .../168-libblas3_3.12.1-2_amd64.deb ... 231s Unpacking libblas3:amd64 (3.12.1-2) ... 231s Selecting previously unselected package liblapack3:amd64. 231s Preparing to unpack .../169-liblapack3_3.12.1-2_amd64.deb ... 231s Unpacking liblapack3:amd64 (3.12.1-2) ... 231s Selecting previously unselected package python3-numpy. 231s Preparing to unpack .../170-python3-numpy_1%3a1.26.4+ds-13_amd64.deb ... 231s Unpacking python3-numpy (1:1.26.4+ds-13) ... 232s Selecting previously unselected package libhdf5-hl-310:amd64. 232s Preparing to unpack .../171-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 232s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 232s Selecting previously unselected package liblzf1:amd64. 232s Preparing to unpack .../172-liblzf1_3.6-4_amd64.deb ... 232s Unpacking liblzf1:amd64 (3.6-4) ... 232s Selecting previously unselected package python3-h5py-serial. 232s Preparing to unpack .../173-python3-h5py-serial_3.12.1-1_amd64.deb ... 232s Unpacking python3-h5py-serial (3.12.1-1) ... 232s Selecting previously unselected package python3-h5py. 232s Preparing to unpack .../174-python3-h5py_3.12.1-1_all.deb ... 232s Unpacking python3-h5py (3.12.1-1) ... 232s Selecting previously unselected package python3-hdf5plugin. 232s Preparing to unpack .../175-python3-hdf5plugin_4.0.1-4_all.deb ... 232s Unpacking python3-hdf5plugin (4.0.1-4) ... 232s Selecting previously unselected package libjs-jquery-ui. 232s Preparing to unpack .../176-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 232s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 232s Selecting previously unselected package fonts-lyx. 232s Preparing to unpack .../177-fonts-lyx_2.4.3-1_all.deb ... 232s Unpacking fonts-lyx (2.4.3-1) ... 232s Selecting previously unselected package python-matplotlib-data. 232s Preparing to unpack .../178-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 232s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 232s Selecting previously unselected package python3-dateutil. 232s Preparing to unpack .../179-python3-dateutil_2.9.0-3_all.deb ... 232s Unpacking python3-dateutil (2.9.0-3) ... 232s Selecting previously unselected package libimagequant0:amd64. 232s Preparing to unpack .../180-libimagequant0_2.18.0-1build1_amd64.deb ... 232s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 232s Selecting previously unselected package liblcms2-2:amd64. 232s Preparing to unpack .../181-liblcms2-2_2.16-2_amd64.deb ... 232s Unpacking liblcms2-2:amd64 (2.16-2) ... 232s Selecting previously unselected package libopenjp2-7:amd64. 232s Preparing to unpack .../182-libopenjp2-7_2.5.0-2ubuntu3_amd64.deb ... 232s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 232s Selecting previously unselected package libraqm0:amd64. 232s Preparing to unpack .../183-libraqm0_0.10.2-1_amd64.deb ... 232s Unpacking libraqm0:amd64 (0.10.2-1) ... 232s Selecting previously unselected package libwebpdemux2:amd64. 232s Preparing to unpack .../184-libwebpdemux2_1.5.0-0.1_amd64.deb ... 232s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 232s Selecting previously unselected package libwebpmux3:amd64. 232s Preparing to unpack .../185-libwebpmux3_1.5.0-0.1_amd64.deb ... 232s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 232s Selecting previously unselected package python3-pil:amd64. 232s Preparing to unpack .../186-python3-pil_11.1.0-5_amd64.deb ... 232s Unpacking python3-pil:amd64 (11.1.0-5) ... 232s Selecting previously unselected package python3.12-tk. 232s Preparing to unpack .../187-python3.12-tk_3.12.9-1_amd64.deb ... 232s Unpacking python3.12-tk (3.12.9-1) ... 232s Selecting previously unselected package python3.13-tk. 232s Preparing to unpack .../188-python3.13-tk_3.13.2-1_amd64.deb ... 232s Unpacking python3.13-tk (3.13.2-1) ... 232s Selecting previously unselected package python3-tk:amd64. 232s Preparing to unpack .../189-python3-tk_3.13.1-1_amd64.deb ... 232s Unpacking python3-tk:amd64 (3.13.1-1) ... 232s Selecting previously unselected package python3-pil.imagetk:amd64. 232s Preparing to unpack .../190-python3-pil.imagetk_11.1.0-5_amd64.deb ... 232s Unpacking python3-pil.imagetk:amd64 (11.1.0-5) ... 233s Selecting previously unselected package python3-contourpy. 233s Preparing to unpack .../191-python3-contourpy_1.3.1-1_amd64.deb ... 233s Unpacking python3-contourpy (1.3.1-1) ... 233s Selecting previously unselected package python3-cycler. 233s Preparing to unpack .../192-python3-cycler_0.12.1-1_all.deb ... 233s Unpacking python3-cycler (0.12.1-1) 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python3-all (3.13.1-1~exp2) ... 234s Selecting previously unselected package unicode-data. 234s Preparing to unpack .../204-unicode-data_15.1.0-1_all.deb ... 234s Unpacking unicode-data (15.1.0-1) ... 234s Selecting previously unselected package python3-fonttools. 234s Preparing to unpack .../205-python3-fonttools_4.55.3-2_amd64.deb ... 234s Unpacking python3-fonttools (4.55.3-2) ... 234s Selecting previously unselected package python3-importlib-resources. 234s Preparing to unpack .../206-python3-importlib-resources_6.5.2-1_all.deb ... 234s Unpacking python3-importlib-resources (6.5.2-1) ... 234s Selecting previously unselected package python3-kiwisolver. 234s Preparing to unpack .../207-python3-kiwisolver_1.4.7-3_amd64.deb ... 234s Unpacking python3-kiwisolver (1.4.7-3) ... 234s Selecting previously unselected package python3-packaging. 234s Preparing to unpack .../208-python3-packaging_24.2-1_all.deb ... 234s Unpacking python3-packaging (24.2-1) ... 234s Selecting previously unselected package libqhull-r8.0:amd64. 234s Preparing to unpack .../209-libqhull-r8.0_2020.2-6build1_amd64.deb ... 234s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 234s Selecting previously unselected package python3-matplotlib. 234s Preparing to unpack .../210-python3-matplotlib_3.8.3-3ubuntu2_amd64.deb ... 234s Unpacking python3-matplotlib (3.8.3-3ubuntu2) ... 235s Selecting previously unselected package fonts-font-awesome. 235s Preparing to unpack .../211-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 235s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 235s Selecting previously unselected package sphinx-rtd-theme-common. 235s Preparing to unpack .../212-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 235s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 235s Selecting previously unselected package python3-mrcfile. 235s Preparing to unpack .../213-python3-mrcfile_1.5.4-2_all.deb ... 235s Unpacking python3-mrcfile (1.5.4-2) ... 235s Selecting previously unselected package python3-natsort. 235s Preparing to unpack .../214-python3-natsort_8.0.2-2_all.deb ... 235s Unpacking python3-natsort (8.0.2-2) ... 235s Selecting previously unselected package python3-flexcache. 235s Preparing to unpack .../215-python3-flexcache_0.3-2_all.deb ... 235s Unpacking python3-flexcache (0.3-2) ... 235s Selecting previously unselected package python3-flexparser. 235s Preparing to unpack .../216-python3-flexparser_0.4-1_all.deb ... 235s Unpacking python3-flexparser (0.4-1) ... 235s Selecting previously unselected package python3-pint. 235s Preparing to unpack .../217-python3-pint_0.24.4-1_all.deb ... 235s Unpacking python3-pint (0.24.4-1) ... 235s Selecting previously unselected package python3-nxmx. 235s Preparing to unpack .../218-python3-nxmx_0.0.4-1_all.deb ... 235s Unpacking python3-nxmx (0.0.4-1) ... 235s Selecting previously unselected package python3-ordered-set. 235s Preparing to unpack .../219-python3-ordered-set_4.1.0-1_all.deb ... 235s Unpacking python3-ordered-set (4.1.0-1) ... 235s Selecting previously unselected package python3-procrunner. 235s Preparing to unpack .../220-python3-procrunner_2.3.3-2_all.deb ... 235s Unpacking python3-procrunner (2.3.3-2) ... 235s Selecting previously unselected package libopengl0:amd64. 235s Preparing to unpack .../221-libopengl0_1.7.0-1build1_amd64.deb ... 235s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 235s Selecting previously unselected package libglu1-mesa:amd64. 235s Preparing to unpack .../222-libglu1-mesa_9.0.2-1.1build1_amd64.deb ... 235s Unpacking libglu1-mesa:amd64 (9.0.2-1.1build1) ... 235s Selecting previously unselected package python3-opengl. 235s Preparing to unpack .../223-python3-opengl_3.1.7+dfsg-1_all.deb ... 235s Unpacking python3-opengl (3.1.7+dfsg-1) ... 235s Selecting previously unselected package python3-pyqt5.sip. 236s Preparing to unpack .../224-python3-pyqt5.sip_12.17.0-1_amd64.deb ... 236s Unpacking python3-pyqt5.sip (12.17.0-1) ... 236s Selecting previously unselected package libqt5xml5t64:amd64. 236s Preparing to unpack .../225-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 236s Unpacking libqt5xml5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 236s Selecting previously unselected package libqt5designer5:amd64. 236s Preparing to unpack .../226-libqt5designer5_5.15.15-6_amd64.deb ... 236s Unpacking libqt5designer5:amd64 (5.15.15-6) ... 236s Selecting previously unselected package libqt5sql5t64:amd64. 236s Preparing to unpack .../227-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 236s Unpacking libqt5sql5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 236s Selecting previously unselected package libqt5help5:amd64. 236s Preparing to unpack .../228-libqt5help5_5.15.15-6_amd64.deb ... 236s Unpacking libqt5help5:amd64 (5.15.15-6) ... 236s Selecting previously unselected package libqt5test5t64:amd64. 236s Preparing to unpack .../229-libqt5test5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 236s Unpacking libqt5test5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 236s Selecting previously unselected package python3-pyqt5. 236s Preparing to unpack .../230-python3-pyqt5_5.15.11+dfsg-1build2_amd64.deb ... 236s Unpacking python3-pyqt5 (5.15.11+dfsg-1build2) ... 236s Selecting previously unselected package libqt5opengl5t64:amd64. 236s Preparing to unpack .../231-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 236s Unpacking libqt5opengl5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 236s Selecting previously unselected package python3-pyqt5.qtopengl. 236s Preparing to unpack .../232-python3-pyqt5.qtopengl_5.15.11+dfsg-1build2_amd64.deb ... 236s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build2) ... 236s Selecting previously unselected package libglew2.2:amd64. 236s Preparing to unpack .../233-libglew2.2_2.2.0-4build1_amd64.deb ... 236s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 236s Selecting previously unselected package libnetcdf22:amd64. 236s Preparing to unpack .../234-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 236s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 236s Selecting previously unselected package pymol-data. 236s Preparing to unpack .../235-pymol-data_3.0.0+dfsg-3build1_all.deb ... 236s Unpacking pymol-data (3.0.0+dfsg-3build1) ... 236s Selecting previously unselected package python3-pymol. 236s Preparing to unpack .../236-python3-pymol_3.0.0+dfsg-3build1_amd64.deb ... 236s Unpacking python3-pymol (3.0.0+dfsg-3build1) ... 236s Selecting previously unselected package python3-six. 236s Preparing to unpack .../237-python3-six_1.17.0-1_all.deb ... 236s Unpacking python3-six (1.17.0-1) ... 236s Selecting previously unselected package python3-tqdm. 236s Preparing to unpack .../238-python3-tqdm_4.67.1-2_all.deb ... 236s Unpacking python3-tqdm (4.67.1-2) ... 236s Selecting previously unselected package libpcre2-32-0:amd64. 236s Preparing to unpack .../239-libpcre2-32-0_10.42-4ubuntu3_amd64.deb ... 236s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 236s Selecting previously unselected package libwxbase3.2-1t64:amd64. 236s Preparing to unpack .../240-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_amd64.deb ... 236s Unpacking libwxbase3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ... 236s Selecting previously unselected package libatk1.0-0t64:amd64. 236s Preparing to unpack .../241-libatk1.0-0t64_2.55.2-1_amd64.deb ... 236s Unpacking libatk1.0-0t64:amd64 (2.55.2-1) ... 236s Selecting previously unselected package libxi6:amd64. 237s Preparing to unpack .../242-libxi6_2%3a1.8.2-1_amd64.deb ... 237s Unpacking libxi6:amd64 (2:1.8.2-1) ... 237s Selecting previously unselected package libatspi2.0-0t64:amd64. 237s Preparing to unpack .../243-libatspi2.0-0t64_2.55.2-1_amd64.deb ... 237s Unpacking libatspi2.0-0t64:amd64 (2.55.2-1) ... 237s Selecting previously unselected package libatk-bridge2.0-0t64:amd64. 237s Preparing to unpack .../244-libatk-bridge2.0-0t64_2.55.2-1_amd64.deb ... 237s Unpacking libatk-bridge2.0-0t64:amd64 (2.55.2-1) ... 237s Selecting previously unselected package libpixman-1-0:amd64. 237s Preparing to unpack .../245-libpixman-1-0_0.44.0-3_amd64.deb ... 237s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 237s Selecting previously unselected package libcairo2:amd64. 237s Preparing to unpack .../246-libcairo2_1.18.2-2_amd64.deb ... 237s Unpacking libcairo2:amd64 (1.18.2-2) ... 237s Selecting previously unselected package libcairo-gobject2:amd64. 237s Preparing to unpack .../247-libcairo-gobject2_1.18.2-2_amd64.deb ... 237s Unpacking libcairo-gobject2:amd64 (1.18.2-2) ... 237s Selecting previously unselected package libcolord2:amd64. 237s Preparing to unpack .../248-libcolord2_1.4.7-1build2_amd64.deb ... 237s Unpacking libcolord2:amd64 (1.4.7-1build2) ... 237s Selecting previously unselected package libepoxy0:amd64. 237s Preparing to unpack .../249-libepoxy0_1.5.10-2_amd64.deb ... 237s Unpacking libepoxy0:amd64 (1.5.10-2) ... 237s Selecting previously unselected package libthai-data. 237s Preparing to unpack .../250-libthai-data_0.1.29-2build1_all.deb ... 237s Unpacking libthai-data (0.1.29-2build1) ... 237s Selecting previously unselected package libdatrie1:amd64. 237s Preparing to unpack .../251-libdatrie1_0.2.13-3build1_amd64.deb ... 237s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 237s Selecting previously unselected package libthai0:amd64. 237s Preparing to unpack .../252-libthai0_0.1.29-2build1_amd64.deb ... 237s Unpacking libthai0:amd64 (0.1.29-2build1) ... 237s Selecting previously unselected package libpango-1.0-0:amd64. 237s Preparing to unpack .../253-libpango-1.0-0_1.56.1-1_amd64.deb ... 237s Unpacking libpango-1.0-0:amd64 (1.56.1-1) ... 237s Selecting previously unselected package libpangoft2-1.0-0:amd64. 237s Preparing to unpack .../254-libpangoft2-1.0-0_1.56.1-1_amd64.deb ... 237s Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ... 237s Selecting previously unselected package libpangocairo-1.0-0:amd64. 237s Preparing to unpack .../255-libpangocairo-1.0-0_1.56.1-1_amd64.deb ... 237s Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ... 237s Selecting previously unselected package libwayland-cursor0:amd64. 237s Preparing to unpack .../256-libwayland-cursor0_1.23.1-1_amd64.deb ... 237s Unpacking libwayland-cursor0:amd64 (1.23.1-1) ... 237s Selecting previously unselected package libwayland-egl1:amd64. 237s Preparing to unpack .../257-libwayland-egl1_1.23.1-1_amd64.deb ... 237s Unpacking libwayland-egl1:amd64 (1.23.1-1) ... 237s Selecting previously unselected package libxcomposite1:amd64. 237s Preparing to unpack .../258-libxcomposite1_1%3a0.4.6-1_amd64.deb ... 237s Unpacking libxcomposite1:amd64 (1:0.4.6-1) ... 237s Selecting previously unselected package libxfixes3:amd64. 237s Preparing to unpack .../259-libxfixes3_1%3a6.0.0-2build1_amd64.deb ... 237s Unpacking libxfixes3:amd64 (1:6.0.0-2build1) ... 237s Selecting previously unselected package libxcursor1:amd64. 237s Preparing to unpack .../260-libxcursor1_1%3a1.2.3-1_amd64.deb ... 237s Unpacking libxcursor1:amd64 (1:1.2.3-1) ... 237s Selecting previously unselected package libxdamage1:amd64. 237s Preparing to unpack .../261-libxdamage1_1%3a1.1.6-1build1_amd64.deb ... 237s Unpacking libxdamage1:amd64 (1:1.1.6-1build1) ... 237s Selecting previously unselected package libxinerama1:amd64. 237s Preparing to unpack .../262-libxinerama1_2%3a1.1.4-3build1_amd64.deb ... 237s Unpacking libxinerama1:amd64 (2:1.1.4-3build1) ... 237s Selecting previously unselected package libxrandr2:amd64. 237s Preparing to unpack .../263-libxrandr2_2%3a1.5.4-1_amd64.deb ... 237s Unpacking libxrandr2:amd64 (2:1.5.4-1) ... 237s Selecting previously unselected package libgtk-3-common. 237s Preparing to unpack .../264-libgtk-3-common_3.24.48-3ubuntu1_all.deb ... 237s Unpacking libgtk-3-common (3.24.48-3ubuntu1) ... 237s Selecting previously unselected package libgtk-3-0t64:amd64. 237s Preparing to unpack .../265-libgtk-3-0t64_3.24.48-3ubuntu1_amd64.deb ... 237s Unpacking libgtk-3-0t64:amd64 (3.24.48-3ubuntu1) ... 237s Selecting previously unselected package libnotify4:amd64. 238s Preparing to unpack .../266-libnotify4_0.8.3-1build2_amd64.deb ... 238s Unpacking libnotify4:amd64 (0.8.3-1build2) ... 238s Selecting previously unselected package libxtst6:amd64. 238s Preparing to unpack .../267-libxtst6_2%3a1.2.5-1_amd64.deb ... 238s Unpacking libxtst6:amd64 (2:1.2.5-1) ... 238s Selecting previously unselected package libwxgtk3.2-1t64:amd64. 238s Preparing to unpack .../268-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_amd64.deb ... 238s Unpacking libwxgtk3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ... 238s Selecting previously unselected package libwxgtk-gl3.2-1t64:amd64. 238s Preparing to unpack .../269-libwxgtk-gl3.2-1t64_3.2.6+dfsg-2ubuntu1_amd64.deb ... 238s Unpacking libwxgtk-gl3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ... 238s Selecting previously unselected package python3-wxgtk4.0. 238s Preparing to unpack .../270-python3-wxgtk4.0_4.2.2+dfsg-3_amd64.deb ... 238s Unpacking python3-wxgtk4.0 (4.2.2+dfsg-3) ... 238s Selecting previously unselected package libantlr3c-3.4-0:amd64. 238s Preparing to unpack .../271-libantlr3c-3.4-0_3.4+dfsg-4build2_amd64.deb ... 238s Unpacking libantlr3c-3.4-0:amd64 (3.4+dfsg-4build2) ... 238s Selecting previously unselected package libboost-numpy1.83.0. 238s Preparing to unpack .../272-libboost-numpy1.83.0_1.83.0-4.1ubuntu1_amd64.deb ... 238s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ... 238s Selecting previously unselected package libboost-thread1.83.0:amd64. 238s Preparing to unpack .../273-libboost-thread1.83.0_1.83.0-4.1ubuntu1_amd64.deb ... 238s Unpacking libboost-thread1.83.0:amd64 (1.83.0-4.1ubuntu1) ... 238s Selecting previously unselected package libboost-timer1.83.0:amd64. 238s Preparing to unpack .../274-libboost-timer1.83.0_1.83.0-4.1ubuntu1_amd64.deb ... 238s Unpacking libboost-timer1.83.0:amd64 (1.83.0-4.1ubuntu1) ... 238s Selecting previously unselected package libssm2:amd64. 238s Preparing to unpack .../275-libssm2_1.4.0-2build1_amd64.deb ... 238s Unpacking libssm2:amd64 (1.4.0-2build1) ... 238s Selecting previously unselected package python3-cctbx. 238s Preparing to unpack .../276-python3-cctbx_2024.10+ds2+~3.22.1+ds1-4build1_amd64.deb ... 238s Unpacking python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build1) ... 240s Selecting previously unselected package python3-pandas-lib:amd64. 240s Preparing to unpack .../277-python3-pandas-lib_2.2.3+dfsg-8_amd64.deb ... 240s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... 240s Selecting previously unselected package python3-pandas. 240s Preparing to unpack .../278-python3-pandas_2.2.3+dfsg-8_all.deb ... 240s Unpacking python3-pandas (2.2.3+dfsg-8) ... 240s Selecting previously unselected package python3-psutil. 240s Preparing to unpack .../279-python3-psutil_5.9.8-2build3_amd64.deb ... 240s Unpacking python3-psutil (5.9.8-2build3) ... 240s Selecting previously unselected package python3-fabio. 240s Preparing to unpack .../280-python3-fabio_2024.4.0-2build1_amd64.deb ... 240s Unpacking python3-fabio (2024.4.0-2build1) ... 240s Selecting previously 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Selecting previously unselected package libsource-highlight4t64:amd64. 241s Preparing to unpack .../297-libsource-highlight4t64_3.1.9-4.3build1_amd64.deb ... 241s Unpacking libsource-highlight4t64:amd64 (3.1.9-4.3build1) ... 241s Selecting previously unselected package gdb. 241s Preparing to unpack .../298-gdb_16.2-1ubuntu1_amd64.deb ... 241s Unpacking gdb (16.2-1ubuntu1) ... 242s Selecting previously unselected package python3-coverage. 242s Preparing to unpack .../299-python3-coverage_7.4.4+dfsg1-0ubuntu3_amd64.deb ... 242s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu3) ... 242s Selecting previously unselected package python3-debugpy. 242s Preparing to unpack .../300-python3-debugpy_1.8.8+ds-2ubuntu1_amd64.deb ... 242s Unpacking python3-debugpy (1.8.8+ds-2ubuntu1) ... 242s Selecting previously unselected package python3-parso. 242s Preparing to unpack .../301-python3-parso_0.8.4-1_all.deb ... 242s Unpacking python3-parso (0.8.4-1) ... 242s Selecting previously unselected package python3-typeshed. 242s Preparing to unpack .../302-python3-typeshed_0.0~git20241223.ea91db2-1_all.deb ... 242s Unpacking python3-typeshed (0.0~git20241223.ea91db2-1) ... 243s Selecting previously unselected package python3-jedi. 243s Preparing to unpack .../303-python3-jedi_0.19.1+ds1-1_all.deb ... 243s Unpacking python3-jedi (0.19.1+ds1-1) ... 243s Selecting previously unselected package python3-matplotlib-inline. 243s Preparing to unpack .../304-python3-matplotlib-inline_0.1.6-2_all.deb ... 243s Unpacking python3-matplotlib-inline (0.1.6-2) ... 243s Selecting previously unselected package python3-wcwidth. 243s Preparing to unpack .../305-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 243s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 243s Selecting previously unselected package python3-prompt-toolkit. 243s Preparing to unpack .../306-python3-prompt-toolkit_3.0.50-1_all.deb ... 243s Unpacking python3-prompt-toolkit (3.0.50-1) ... 243s Selecting previously unselected package 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update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 302s Setting up python3-ipython (8.30.0-2) ... 303s Setting up libnotify4:amd64 (0.8.3-1build2) ... 303s Setting up python3-dev (3.13.1-1~exp2) ... 303s Setting up libboost-python1.83-dev (1.83.0-4.1ubuntu1) ... 303s Setting up python3-pycbf (0.9.7+dfsg1-4build2) ... 303s Setting up python3-ipykernel (6.29.5-2) ... 303s Setting up python3-h5py (3.12.1-1) ... 303s Setting up python3-sklearn (1.4.2+dfsg-7build1) ... 306s Setting up python3-numexpr (2.10.2-1build1) ... 307s Setting up python3-pytools (2024.1.14-1) ... 307s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 307s Setting up python3-hdf5plugin (4.0.1-4) ... 307s Setting up libcairo-gobject2:amd64 (1.18.2-2) ... 307s Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ... 307s Setting up python3-nxmx (0.0.4-1) ... 307s Setting up libcups2t64:amd64 (2.4.11-0ubuntu2) ... 307s Setting up libgtk-3-common (3.24.48-3ubuntu1) ... 307s Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ... 307s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build1) ... 307s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 307s Setting up blt (2.5.3+dfsg-7build1) ... 307s Setting up python3-tk:amd64 (3.13.1-1) ... 307s Setting up clang-18 (1:18.1.8-15) ... 307s Setting up python3-opengl (3.1.7+dfsg-1) ... 308s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 308s '''OpenGL extension AMD.vertex_shader_tessellator 309s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 309s '''OpenGL extension AMD.vertex_shader_tessellator 310s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 310s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 310s Setting up python3-pil.imagetk:amd64 (11.1.0-5) ... 310s Setting up libqt5quick5:amd64 (5.15.15+dfsg-3) ... 310s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build1) ... 310s Setting up libqt5positioningquick5:amd64 (5.15.15+dfsg-3) ... 310s Setting up libqt5location5:amd64 (5.15.15+dfsg-3) ... 310s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 310s Setting up libpocl2t64:amd64 (6.0-4) ... 310s Setting up libqt5svg5:amd64 (5.15.15-2) ... 310s Setting up libqt5help5:amd64 (5.15.15-6) ... 310s Setting up libqt5charts5:amd64 (5.15.15-2) ... 310s Setting up libqt5multimedia5:amd64 (5.15.15-2) ... 310s Setting up libqt5quickwidgets5:amd64 (5.15.15+dfsg-3) ... 310s Setting up pocl-opencl-icd:amd64 (6.0-4) ... 310s Setting up libqt5multimediawidgets5:amd64 (5.15.15-2) ... 310s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 310s Setting up python3-pyopencl (2024.1-3) ... 311s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 311s Setting up libqt5designer5:amd64 (5.15.15-6) ... 311s Setting up libqt5webkit5:amd64 (5.212.0~alpha4-42) ... 311s Setting up python3-pyqt5 (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtpositioning (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtsvg (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qttexttospeech (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtsql (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtmultimedia (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtchart (5.15.7+dfsg-1) ... 311s Setting up python3-pyqt5.qtxmlpatterns (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtsensors (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtwebsockets (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtserialport (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtremoteobjects (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtwebchannel (5.15.11+dfsg-1build2) ... 311s Setting up python3-pyqt5.qtwebkit (5.15.11+dfsg-1build2) ... 311s Setting up python3-pymol (3.0.0+dfsg-3build1) ... 312s Setting up python3-pyqt5.qtquick (5.15.11+dfsg-1build2) ... 312s Setting up python3-qtpy (2.4.2-4) ... 312s Setting up python3-qtconsole (5.6.1-4) ... 312s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 313s Setting up python3-fonttools (4.55.3-2) ... 314s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 317s Setting up python3-fabio (2024.4.0-2build1) ... 317s Setting up python3-silx (2.1.2+dfsg-1build2) ... 319s Setting up python3-pyfai (2024.05-3build2) ... 320s /usr/lib/python3/dist-packages/pyFAI/method_registry.py:385: SyntaxWarning: invalid escape sequence '\ ' 320s """Constructor of the class, registering the methods. 320s /usr/lib/python3/dist-packages/pyFAI/opencl/preproc.py:514: SyntaxWarning: invalid escape sequence '\*' 320s """Common preprocessing step, implemented using OpenCL. May be inefficient 320s /usr/lib/python3/dist-packages/pyFAI/method_registry.py:385: SyntaxWarning: invalid escape sequence '\ ' 320s """Constructor of the class, registering the methods. 320s /usr/lib/python3/dist-packages/pyFAI/opencl/preproc.py:514: SyntaxWarning: invalid escape sequence '\*' 320s """Common preprocessing step, implemented using OpenCL. May be inefficient 321s Processing triggers for libc-bin (2.40-4ubuntu1) ... 321s Processing triggers for systemd (257.2-3ubuntu1) ... 321s Processing triggers for man-db (2.13.0-1) ... 322s Processing triggers for libglib2.0-0t64:amd64 (2.83.3-2) ... 322s Setting up libgtk-3-0t64:amd64 (3.24.48-3ubuntu1) ... 322s Processing triggers for udev (257.2-3ubuntu1) ... 322s Setting up libwxgtk3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ... 322s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ... 322s Setting up python3-wxgtk4.0 (4.2.2+dfsg-3) ... 325s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build1) ... 327s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 327s """ Iterator to generate strings of length n_chars, using upper-case, 327s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 327s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 337s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 337s width=pairwise_differences_db, label='$\omega_{hkl}$' 337s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 337s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 337s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 337s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 337s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 337s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 337s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 337s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 337s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 337s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 339s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 339s """ Iterator to generate strings of length n_chars, using upper-case, 339s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 339s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 346s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 346s width=pairwise_differences_db, label='$\omega_{hkl}$' 346s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 346s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 346s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 346s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 346s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 346s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 346s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 346s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 346s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 346s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 347s Setting up python3-dials (3.22.1+dfsg3-1) ... 348s Setting up dials (3.22.1+dfsg3-1) ... 348s Processing triggers for libc-bin (2.40-4ubuntu1) ... 349s autopkgtest [04:56:33]: test command1: set -efu ; for py in $(py3versions -r 2>/dev/null) ; do cp -r tests conftest.py "$AUTOPKGTEST_TMP" || true ; cd "$AUTOPKGTEST_TMP" ; echo "Testing dials with $py:" ; DIALS_DATA="$AUTOPKGTEST_TMP" $py -m pytest --verbosity=2 ; done 349s autopkgtest [04:56:33]: test command1: [----------------------- 350s Testing dials with python3.12: 351s ============================= test session starts ============================== 351s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 351s cachedir: .pytest_cache 351s rootdir: /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 351s plugins: dials-data-2.4.0, xdist-3.6.1, typeguard-4.4.1, mock-3.14.0 376s collecting ... collected 174 items / 197 errors 376s 376s ==================================== ERRORS ==================================== 376s _________ ERROR collecting tests/algorithms/background/test_gmodel.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background/test_gmodel.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/background/test_gmodel.py:10: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ____ ERROR collecting tests/algorithms/background/test_outlier_rejector.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background/test_outlier_rejector.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/background/test_outlier_rejector.py:14: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ________ ERROR collecting tests/algorithms/clustering/test_observers.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/clustering/test_observers.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/clustering/test_observers.py:6: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s __________ ERROR collecting tests/algorithms/clustering/test_plots.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/clustering/test_plots.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/clustering/test_plots.py:5: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ________ ERROR collecting tests/algorithms/clustering/test_unit_cell.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/clustering/test_unit_cell.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/clustering/test_unit_cell.py:7: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ________ ERROR collecting tests/algorithms/correlation/test_analysis.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/correlation/test_analysis.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/correlation/test_analysis.py:8: in 376s from dials.algorithms.correlation.analysis import CorrelationMatrix 376s /usr/lib/python3/dist-packages/dials/algorithms/correlation/analysis.py:14: in 376s import iotbx.phil 376s /usr/lib/python3/dist-packages/iotbx/phil.py:6: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _______ ERROR collecting tests/algorithms/image/threshold/test_local.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold/test_local.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/image/threshold/test_local.py:9: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ________ ERROR collecting tests/algorithms/indexing/basis_vector_search ________ 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/basis_vector_search/conftest.py:7: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _ ERROR collecting tests/algorithms/indexing/lattice_search/test_lattice_search.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search/test_lattice_search.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/lattice_search/test_lattice_search.py:6: in 376s from cctbx import sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _______ ERROR collecting tests/algorithms/indexing/ssx/test_analysis.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx/test_analysis.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/ssx/test_analysis.py:5: in 376s from cctbx import crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ______ ERROR collecting tests/algorithms/indexing/test_assign_indices.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_assign_indices.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_assign_indices.py:10: in 376s from cctbx import crystal, sgtbx 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _ ERROR collecting tests/algorithms/indexing/test_compare_orientation_matrices.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_compare_orientation_matrices.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_compare_orientation_matrices.py:5: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ___________ ERROR collecting tests/algorithms/indexing/test_index.py ___________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_index.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_index.py:11: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _________ ERROR collecting tests/algorithms/indexing/test_max_cell.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_max_cell.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_max_cell.py:8: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _____ ERROR collecting tests/algorithms/indexing/test_model_evaluation.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_model_evaluation.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_model_evaluation.py:11: in 376s from cctbx import sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ____ ERROR collecting tests/algorithms/indexing/test_non_primitive_basis.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_non_primitive_basis.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_non_primitive_basis.py:6: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _________ ERROR collecting tests/algorithms/indexing/test_phi_scan.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_phi_scan.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_phi_scan.py:5: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _________ ERROR collecting tests/algorithms/indexing/test_symmetry.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/test_symmetry.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/indexing/test_symmetry.py:6: in 376s from cctbx import crystal, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _ ERROR collecting tests/algorithms/integration/profile/test_profile_fitting.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/profile/test_profile_fitting.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/profile/test_profile_fitting.py:9: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _ ERROR collecting tests/algorithms/integration/ssx/test_ellipsoid_integrate.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx/test_ellipsoid_integrate.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/ssx/test_ellipsoid_integrate.py:7: in 376s from dxtbx.serialize import load 376s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 376s from dxtbx.model.crystal import CrystalFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s ______ ERROR collecting tests/algorithms/integration/test_corrections.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/test_corrections.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/test_corrections.py:3: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _______ ERROR collecting tests/algorithms/integration/test_filtering.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/test_filtering.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/test_filtering.py:3: in 376s from cctbx import sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s _______ ERROR collecting tests/algorithms/integration/test_integrator.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/test_integrator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/test_integrator.py:6: in 376s from dials.algorithms.integration import integrator 376s /usr/lib/python3/dist-packages/dials/algorithms/integration/integrator.py:11: in 376s from dials.algorithms.integration import TimingInfo, processor 376s /usr/lib/python3/dist-packages/dials/algorithms/integration/processor.py:14: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _________ ERROR collecting tests/algorithms/integration/test_kapton.py _________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/test_kapton.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/test_kapton.py:8: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __ ERROR collecting tests/algorithms/integration/test_parallel_integrator.py ___ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/test_parallel_integrator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/test_parallel_integrator.py:10: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _______ ERROR collecting tests/algorithms/integration/test_processor.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/test_processor.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/test_processor.py:8: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/integration/test_simple_integrate.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/test_simple_integrate.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/integration/test_simple_integrate.py:8: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _______ ERROR collecting tests/algorithms/merging/test_french_wilson.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/merging/test_french_wilson.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/merging/test_french_wilson.py:5: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___________ ERROR collecting tests/algorithms/merging/test_merge.py ____________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/merging/test_merge.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/merging/test_merge.py:5: in 376s from cctbx import crystal, miller, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _______ ERROR collecting tests/algorithms/polygon/clip/test_clipping.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip/test_clipping.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/polygon/clip/test_clipping.py:6: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __________ ERROR collecting tests/algorithms/profile_model/ellipsoid ___________ 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/profile_model/ellipsoid/conftest.py:5: in 376s from dxtbx.model import BeamFactory, CrystalFactory, DetectorFactory, Experiment, Scan 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/profile_model/test_calculator.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model/test_calculator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/profile_model/test_calculator.py:3: in 376s from dials.algorithms.profile_model.gaussian_rs.calculator import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/gaussian_rs/__init__.py:4: in 376s from dials.algorithms.profile_model.gaussian_rs.model import Model, phil_scope 376s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/gaussian_rs/model.py:7: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_angle_derivatives_wrt_vector_elts.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_angle_derivatives_wrt_vector_elts.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_angle_derivatives_wrt_vector_elts.py:11: in 376s from scitbx.math import angle_derivative_wrt_vectors 376s /usr/lib/python3/dist-packages/scitbx/math/__init__.py:7: in 376s from scitbx.math.ext import * 376s /usr/lib/python3/dist-packages/scitbx/math/ext.py:2: in 376s import scitbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/refinement/test_centroid_outlier.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_centroid_outlier.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_centroid_outlier.py:5: in 376s from dials.algorithms.refinement.outlier_detection import CentroidOutlierFactory 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 376s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory # noqa: E402 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:11: in 376s from dxtbx.model.experiment_list import ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _______ ERROR collecting tests/algorithms/refinement/test_constraints.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_constraints.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_constraints.py:11: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___ ERROR collecting tests/algorithms/refinement/test_crystal_parameters.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_crystal_parameters.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_crystal_parameters.py:5: in 376s from dxtbx.model import Crystal 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/refinement/test_cspad_refinement.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_cspad_refinement.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_cspad_refinement.py:6: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___ ERROR collecting tests/algorithms/refinement/test_detector_parameters.py ___ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_detector_parameters.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_detector_parameters.py:7: in 376s from dxtbx.model import BeamFactory, Detector, DetectorFactory, Panel 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/refinement/test_finite_diffs.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_finite_diffs.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_finite_diffs.py:8: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __ ERROR collecting tests/algorithms/refinement/test_goniometer_parameters.py __ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_goniometer_parameters.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_goniometer_parameters.py:7: in 376s from dxtbx.model import Goniometer 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_multi_experiment_refinement.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_multi_experiment_refinement.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_multi_experiment_refinement.py:9: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_multi_panel_detector_parameterisation.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_multi_panel_detector_parameterisation.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_multi_panel_detector_parameterisation.py:15: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_orientation_refinement.py __ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_orientation_refinement.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_orientation_refinement.py:18: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_parameter_auto_reduction.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_parameter_auto_reduction.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_parameter_auto_reduction.py:5: in 376s from dxtbx.model import Detector 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __ ERROR collecting tests/algorithms/refinement/test_prediction_parameters.py __ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_prediction_parameters.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_prediction_parameters.py:8: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___ ERROR collecting tests/algorithms/refinement/test_refine_multi_stills.py ___ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_refine_multi_stills.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_refine_multi_stills.py:9: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___ ERROR collecting tests/algorithms/refinement/test_refine_multi_wedges.py ___ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_refine_multi_wedges.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_refine_multi_wedges.py:12: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _____ ERROR collecting tests/algorithms/refinement/test_refiner_config.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_refiner_config.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_refiner_config.py:9: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/refinement/test_refiner_units.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_refiner_units.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_refiner_units.py:10: in 376s from dials.algorithms.refinement.refiner import _copy_experiments_for_refining 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 376s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory # noqa: E402 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:11: in 376s from dxtbx.model.experiment_list import ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___ ERROR collecting tests/algorithms/refinement/test_reflection_manager.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_reflection_manager.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_reflection_manager.py:7: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_restraints_parameterisation.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_restraints_parameterisation.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_restraints_parameterisation.py:9: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_rotation_decomposition.py __ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_rotation_decomposition.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_rotation_decomposition.py:11: in 376s from dials.algorithms.refinement.rotation_decomposition import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 376s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory # noqa: E402 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:11: in 376s from dxtbx.model.experiment_list import ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_beam_refinement.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_scan_varying_beam_refinement.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_scan_varying_beam_refinement.py:8: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_block_calculation.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_scan_varying_block_calculation.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_scan_varying_block_calculation.py:11: in 376s from dxtbx.model.experiment_list import Experiment, ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_model_parameters.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_scan_varying_model_parameters.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_scan_varying_model_parameters.py:9: in 376s from dxtbx.model import Beam, Crystal, Goniometer 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_prediction_parameters.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_scan_varying_prediction_parameters.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:4: in 376s from .dxtbx_flumpy import * # noqa: F403 376s E ModuleNotFoundError: No module named 'dxtbx.dxtbx_flumpy' 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s 376s The above exception was the direct cause of the following exception: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_scan_varying_prediction_parameters.py:11: in 376s import dxtbx.flumpy as flumpy 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:6: in 376s from dxtbx_flumpy import * # type: ignore # noqa: F403 376s E ImportError: initialization failed 376s _ ERROR collecting tests/algorithms/refinement/test_stills_prediction_parameters.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_stills_prediction_parameters.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_stills_prediction_parameters.py:5: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_stills_spherical_relp_derivatives.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_stills_spherical_relp_derivatives.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_stills_spherical_relp_derivatives.py:9: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/refinement/test_sv_multi_panel_refinement.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_sv_multi_panel_refinement.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_sv_multi_panel_refinement.py:6: in 376s from dials.algorithms.refinement.engine import Journal 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 376s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory # noqa: E402 376s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:11: in 376s from dxtbx.model.experiment_list import ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __ ERROR collecting tests/algorithms/refinement/test_two_theta_refinement.py ___ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_two_theta_refinement.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_two_theta_refinement.py:10: in 376s from dxtbx.model.experiment_list import Experiment, ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _____ ERROR collecting tests/algorithms/refinement/test_xfel_metrology.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/refinement/test_xfel_metrology.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/refinement/test_xfel_metrology.py:8: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __ ERROR collecting tests/algorithms/reflection_basis/test_beam_vector_map.py __ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis/test_beam_vector_map.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/reflection_basis/test_beam_vector_map.py:8: in 376s from dxtbx.serialize import load 376s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 376s from dxtbx.model.crystal import CrystalFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/reflection_basis/test_coordinate_system.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis/test_coordinate_system.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/reflection_basis/test_coordinate_system.py:10: in 376s from dials.algorithms.profile_model.gaussian_rs import CoordinateSystem 376s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/gaussian_rs/__init__.py:4: in 376s from dials.algorithms.profile_model.gaussian_rs.model import Model, phil_scope 376s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/gaussian_rs/model.py:7: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/reflection_basis/test_grid_index_generator.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis/test_grid_index_generator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/reflection_basis/test_grid_index_generator.py:6: in 376s from dxtbx.serialize import load 376s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 376s from dxtbx.model.crystal import CrystalFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/reflection_basis/test_map_frames.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis/test_map_frames.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/reflection_basis/test_map_frames.py:6: in 376s from dxtbx.serialize import load 376s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 376s from dxtbx.model.crystal import CrystalFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _____ ERROR collecting tests/algorithms/reflection_basis/test_transform.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis/test_transform.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/reflection_basis/test_transform.py:8: in 376s from dxtbx.model import ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/scaling/cross_validation/test_crossvalidation.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation/test_crossvalidation.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/cross_validation/test_crossvalidation.py:10: in 376s from dials.algorithms.scaling.cross_validation.crossvalidator import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/cross_validation/crossvalidator.py:15: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __________ ERROR collecting tests/algorithms/scaling/test_Ih_table.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_Ih_table.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_Ih_table.py:9: in 376s from cctbx.sgtbx import space_group, uctbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _______ ERROR collecting tests/algorithms/scaling/test_basis_function.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_basis_function.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_basis_function.py:9: in 376s from dials.algorithms.scaling.basis_functions import RefinerCalculator 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/basis_functions.py:9: in 376s from scitbx import sparse 376s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:9: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/scaling/test_combine_intensities.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_combine_intensities.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_combine_intensities.py:11: in 376s from dxtbx.model import Crystal, Experiment 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ________ ERROR collecting tests/algorithms/scaling/test_error_model.py _________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_error_model.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_error_model.py:12: in 376s from cctbx.sgtbx import space_group 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _____ ERROR collecting tests/algorithms/scaling/test_gaussian_smoother.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_gaussian_smoother.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_gaussian_smoother.py:7: in 376s from dials.algorithms.scaling.model.components.smooth_scale_components import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/model/components/smooth_scale_components.py:13: in 376s from scitbx import sparse 376s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:9: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___________ ERROR collecting tests/algorithms/scaling/test_model.py ____________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_model.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:4: in 376s from .dxtbx_flumpy import * # noqa: F403 376s E ModuleNotFoundError: No module named 'dxtbx.dxtbx_flumpy' 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_model.py:14: in 376s from dials.algorithms.scaling.model.model import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/model/model.py:17: in 376s from dials.algorithms.scaling.error_model.error_model import BasicErrorModel 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/error_model/error_model.py:13: in 376s from dxtbx import flumpy 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:6: in 376s from dxtbx_flumpy import * # type: ignore # noqa: F403 376s E ImportError: generic_type: type "Scuffer" is already registered! 376s _________ ERROR collecting tests/algorithms/scaling/test_observers.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_observers.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_observers.py:7: in 376s from dxtbx.serialize import load 376s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 376s from dxtbx.model.crystal import CrystalFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _____ ERROR collecting tests/algorithms/scaling/test_outlier_rejection.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_outlier_rejection.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_outlier_rejection.py:11: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _______ ERROR collecting tests/algorithms/scaling/test_param_manager.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_param_manager.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_param_manager.py:11: in 376s from scitbx import sparse 376s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:9: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___________ ERROR collecting tests/algorithms/scaling/test_plots.py ____________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_plots.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:4: in 376s from .dxtbx_flumpy import * # noqa: F403 376s E ModuleNotFoundError: No module named 'dxtbx.dxtbx_flumpy' 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_plots.py:9: in 376s from dials.algorithms.scaling.model.model import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/model/model.py:17: in 376s from dials.algorithms.scaling.error_model.error_model import BasicErrorModel 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/error_model/error_model.py:13: in 376s from dxtbx import flumpy 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:6: in 376s from dxtbx_flumpy import * # type: ignore # noqa: F403 376s E ImportError: generic_type: type "Scuffer" is already registered! 376s ____ ERROR collecting tests/algorithms/scaling/test_reflection_selection.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_reflection_selection.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_reflection_selection.py:10: in 376s from cctbx import sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___________ ERROR collecting tests/algorithms/scaling/test_scale.py ____________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scale.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scale.py:14: in 376s import iotbx.merging_statistics 376s /usr/lib/python3/dist-packages/iotbx/merging_statistics.py:18: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/scaling/test_scale_and_filter.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scale_and_filter.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scale_and_filter.py:8: in 376s from dxtbx.model import Crystal, Experiment, Scan 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/scaling/test_scale_components.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scale_components.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scale_components.py:11: in 376s from scitbx import sparse 376s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:9: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___________ ERROR collecting tests/algorithms/scaling/test_scaler.py ___________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scaler.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:4: in 376s from .dxtbx_flumpy import * # noqa: F403 376s E ModuleNotFoundError: No module named 'dxtbx.dxtbx_flumpy' 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scaler.py:7: in 376s from dxtbx import flumpy 376s /usr/lib/python3/dist-packages/dxtbx/flumpy.py:6: in 376s from dxtbx_flumpy import * # type: ignore # noqa: F403 376s E ImportError: generic_type: type "Scuffer" is already registered! 376s _______ ERROR collecting tests/algorithms/scaling/test_scaler_factory.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scaler_factory.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scaler_factory.py:11: in 376s from dxtbx.model import Crystal 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/scaling/test_scaling_library.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scaling_library.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scaling_library.py:12: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _____ ERROR collecting tests/algorithms/scaling/test_scaling_restraints.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scaling_restraints.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scaling_restraints.py:11: in 376s from scitbx import sparse 376s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:9: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _____ ERROR collecting tests/algorithms/scaling/test_scaling_utilities.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_scaling_utilities.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_scaling_utilities.py:12: in 376s from dxtbx.model import ( 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/scaling/test_target_function.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_target_function.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_target_function.py:14: in 376s from dxtbx.model import Crystal, Experiment, Scan 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ________ ERROR collecting tests/algorithms/scaling/test_targetscaler.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_targetscaler.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_targetscaler.py:13: in 376s from dxtbx.model import Crystal, Experiment, ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ________ ERROR collecting tests/algorithms/scaling/test_tof_scaling.py _________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_tof_scaling.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_tof_scaling.py:5: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _________ ERROR collecting tests/algorithms/scaling/test_weighting.py __________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/test_weighting.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/scaling/test_weighting.py:11: in 376s from dials.algorithms.scaling.weighting import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/scaling/weighting.py:7: in 376s from dials.array_family import flex 376s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 376s from cctbx.array_family.flex import ( # noqa: F401; lgtm 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/shoebox/test_bbox_calculator.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox/test_bbox_calculator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/shoebox/test_bbox_calculator.py:8: in 376s from dxtbx.serialize import load 376s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 376s from dxtbx.model.crystal import CrystalFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/shoebox/test_mask_foreground.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox/test_mask_foreground.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/shoebox/test_mask_foreground.py:8: in 376s from dxtbx.model.experiment_list import ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/shoebox/test_mask_overlapping.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox/test_mask_overlapping.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/shoebox/test_mask_overlapping.py:5: in 376s from dxtbx.model.experiment_list import Experiment, ExperimentList 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___ ERROR collecting tests/algorithms/shoebox/test_partiality_calculator.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox/test_partiality_calculator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/shoebox/test_partiality_calculator.py:5: in 376s from dxtbx.model.experiment_list import ExperimentList, ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/simulation/test_reciprocal_space.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation/test_reciprocal_space.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/simulation/test_reciprocal_space.py:5: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __ ERROR collecting tests/algorithms/spot_finding/test_per_image_analysis.py ___ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding/test_per_image_analysis.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/spot_finding/test_per_image_analysis.py:5: in 376s from dxtbx.serialize import load 376s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 376s from dxtbx.model.crystal import CrystalFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/spot_prediction/test_reeke_index_generator.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_prediction/test_reeke_index_generator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/spot_prediction/test_reeke_index_generator.py:6: in 376s from cctbx.sgtbx import space_group, space_group_info, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py:8: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/spot_prediction/test_scan_varying_predictor.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_prediction/test_scan_varying_predictor.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/spot_prediction/test_scan_varying_predictor.py:10: in 376s from cctbx.sgtbx import space_group, space_group_symbols 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py:8: in 376s from .test_scan_static_reflection_predictor import ( # noqa: F401, used as test fixture; isort:skip 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py:8: in 376s from dxtbx.model.experiment_list import ExperimentListFactory 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/statistics/test_binned_statistics.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics/test_binned_statistics.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/statistics/test_binned_statistics.py:5: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/statistics/test_delta_cchalf_algorithm.py __ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics/test_delta_cchalf_algorithm.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/statistics/test_delta_cchalf_algorithm.py:7: in 376s from dxtbx.model import Crystal, Experiment, ExperimentList, Scan 376s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 376s import cctbx.crystal 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/symmetry/absences/test_laue_group_info.py __ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/absences/test_laue_group_info.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/absences/test_laue_group_info.py:7: in 376s from dials.algorithms.symmetry.absences.laue_groups_info import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:12: in 376s from cctbx import adptbx, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/adptbx.py:2: in 376s from cctbx.array_family import flex # for tuple mappings 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/symmetry/absences/test_plots.py _______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/absences/test_plots.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/absences/test_plots.py:5: in 376s from dials.algorithms.symmetry.absences.plots import color_axis_data, plot_screw_axes 376s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:12: in 376s from cctbx import adptbx, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/adptbx.py:2: in 376s from cctbx.array_family import flex # for tuple mappings 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/symmetry/absences/test_screw_axes.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/absences/test_screw_axes.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/absences/test_screw_axes.py:7: in 376s from dials.algorithms.symmetry.absences.screw_axes import ( 376s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:12: in 376s from cctbx import adptbx, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/adptbx.py:2: in 376s from cctbx.array_family import flex # for tuple mappings 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/symmetry/cosym/test_cosym_analyse_datasets.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_cosym_analyse_datasets.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/cosym/test_cosym_analyse_datasets.py:6: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py:6: in 376s from cctbx import crystal, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ____ ERROR collecting tests/algorithms/symmetry/cosym/test_cosym_target.py _____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_cosym_target.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/cosym/test_cosym_target.py:6: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ______ ERROR collecting tests/algorithms/symmetry/cosym/test_observers.py ______ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_observers.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/cosym/test_observers.py:7: in 376s from dials.algorithms.symmetry.cosym import observers 376s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:12: in 376s from cctbx import adptbx, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/adptbx.py:2: in 376s from cctbx.array_family import flex # for tuple mappings 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ________ ERROR collecting tests/algorithms/symmetry/cosym/test_plots.py ________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_plots.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/cosym/test_plots.py:5: in 376s from dials.algorithms.symmetry.cosym import plots 376s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:12: in 376s from cctbx import adptbx, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/adptbx.py:2: in 376s from cctbx.array_family import flex # for tuple mappings 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py:5: in 376s from scitbx.array_family import flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ________ ERROR collecting tests/algorithms/symmetry/test_laue_group.py _________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/test_laue_group.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/test_laue_group.py:5: in 376s from cctbx import crystal, miller, sgtbx 376s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 376s from cctbx.array_family import flex 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s __________ ERROR collecting tests/algorithms/symmetry/test_origin.py ___________ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/test_origin.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/test_origin.py:3: in 376s from dials.algorithms.symmetry import origin 376s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:12: in 376s from cctbx import adptbx, sgtbx, uctbx 376s /usr/lib/python3/dist-packages/cctbx/adptbx.py:2: in 376s from cctbx.array_family import flex # for tuple mappings 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s ___ ERROR collecting tests/algorithms/symmetry/test_reindex_to_reference.py ____ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/test_reindex_to_reference.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/test_reindex_to_reference.py:9: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 376s E /usr/lib/python3/dist-packages/setuptools/_vendor 376s _ ERROR collecting tests/algorithms/symmetry/test_score_symmetry_element_subgroup.py _ 376s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry/test_score_symmetry_element_subgroup.py'. 376s Hint: make sure your test modules/packages have valid Python names. 376s Traceback: 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 376s try: mod = __import__(name) 376s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s 376s During handling of the above exception, another exception occurred: 376s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 376s mod = import_path( 376s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 376s importlib.import_module(module_name) 376s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 376s return _bootstrap._gcd_import(name[level:], package, level) 376s :1387: in _gcd_import 376s ??? 376s :1360: in _find_and_load 376s ??? 376s :1331: in _find_and_load_unlocked 376s ??? 376s :935: in _load_unlocked 376s ??? 376s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 376s exec(co, module.__dict__) 376s tests/algorithms/symmetry/test_score_symmetry_element_subgroup.py:5: in 376s from cctbx import sgtbx 376s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 376s from cctbx import uctbx 376s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 376s import cctbx.array_family.flex # import dependency 376s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 376s import scitbx.array_family.flex 376s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 376s bp.import_ext("scitbx_array_family_flex_ext") 376s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 376s raise ImportError( 376s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 376s E sys.path: 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 376s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 376s E /usr/lib/python312.zip 376s E /usr/lib/python3.12 376s E /usr/lib/python3.12/lib-dynload 376s E /usr/local/lib/python3.12/dist-packages 376s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _______ ERROR collecting tests/array_family/test_identifiers_handling.py _______ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family/test_identifiers_handling.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/array_family/test_identifiers_handling.py:5: in 377s from dxtbx.model import Experiment, ExperimentList 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/array_family/test_reflection_table.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family/test_reflection_table.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/array_family/test_reflection_table.py:12: in 377s from cctbx import sgtbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_anvil_correction.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_anvil_correction.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_anvil_correction.py:12: in 377s from dxtbx.model import ExperimentList 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________ ERROR collecting tests/command_line/test_apply_mask.py ____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_apply_mask.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_apply_mask.py:7: in 377s from dxtbx.model.experiment_list import ExperimentListFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __ ERROR collecting tests/command_line/test_assign_experiment_identifiers.py ___ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_assign_experiment_identifiers.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_assign_experiment_identifiers.py:11: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/command_line/test_cluster_unit_cell.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_cluster_unit_cell.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_cluster_unit_cell.py:10: in 377s from cctbx import crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _______ ERROR collecting tests/command_line/test_combine_experiments.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_combine_experiments.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_combine_experiments.py:14: in 377s from dxtbx.model.experiment_list import ExperimentListFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _______ ERROR collecting tests/command_line/test_compute_delta_cchalf.py _______ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_compute_delta_cchalf.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_compute_delta_cchalf.py:12: in 377s from dials.command_line.compute_delta_cchalf import CCHalfFromMTZ, phil_scope, run 377s /usr/lib/python3/dist-packages/dials/command_line/compute_delta_cchalf.py:8: in 377s from dials.algorithms.statistics.cc_half_algorithm import CCHalfFromDials, CCHalfFromMTZ 377s /usr/lib/python3/dist-packages/dials/algorithms/statistics/cc_half_algorithm.py:11: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/command_line/test_correlation_matrix.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_correlation_matrix.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_correlation_matrix.py:5: in 377s import dials.command_line.correlation_matrix as dials_corr_mat 377s /usr/lib/python3/dist-packages/dials/command_line/correlation_matrix.py:10: in 377s import iotbx.phil 377s /usr/lib/python3/dist-packages/iotbx/phil.py:6: in 377s from cctbx import sgtbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/command_line/test_cosym.py _______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_cosym.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_cosym.py:8: in 377s from cctbx import sgtbx, uctbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_damage_analysis.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_damage_analysis.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_damage_analysis.py:9: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/command_line/test_detect_blanks.py ___________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_detect_blanks.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_detect_blanks.py:9: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _______ ERROR collecting tests/command_line/test_estimate_resolution.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_estimate_resolution.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_estimate_resolution.py:9: in 377s from dials.command_line import estimate_resolution as cmdline 377s /usr/lib/python3/dist-packages/dials/command_line/estimate_resolution.py:70: in 377s from dials.util import log, resolution_analysis, show_mail_handle_errors 377s /usr/lib/python3/dist-packages/dials/util/resolution_analysis.py:16: in 377s import iotbx.merging_statistics 377s /usr/lib/python3/dist-packages/iotbx/merging_statistics.py:18: in 377s from scitbx.array_family import flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/command_line/test_export.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_export.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_export.py:8: in 377s import gemmi 377s E ModuleNotFoundError: No module named 'gemmi' 377s __________ ERROR collecting tests/command_line/test_export_bitmaps.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_export_bitmaps.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_export_bitmaps.py:8: in 377s from dials.command_line import export_bitmaps 377s /usr/lib/python3/dist-packages/dials/command_line/export_bitmaps.py:8: in 377s import iotbx.phil 377s /usr/lib/python3/dist-packages/iotbx/phil.py:6: in 377s from cctbx import sgtbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________ ERROR collecting tests/command_line/test_export_xds.py ____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_export_xds.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_export_xds.py:6: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/command_line/test_filter_reflections.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_filter_reflections.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_filter_reflections.py:8: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/command_line/test_find_rotation_axis.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_find_rotation_axis.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_find_rotation_axis.py:3: in 377s from dxtbx.model.goniometer import GoniometerFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________ ERROR collecting tests/command_line/test_find_spots.py ____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_find_spots.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_find_spots.py:11: in 377s from dxtbx.model.experiment_list import ExperimentListFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/command_line/test_frame_orientations.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_frame_orientations.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_frame_orientations.py:5: in 377s from dials.command_line.frame_orientations import extract_experiment_data 377s /usr/lib/python3/dist-packages/dials/command_line/frame_orientations.py:21: in 377s from dials.util.options import ArgumentParser, flatten_experiments 377s /usr/lib/python3/dist-packages/dials/util/options.py:18: in 377s from dxtbx.model import ExperimentList 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____ ERROR collecting tests/command_line/test_generate_distortion_maps.py _____ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_generate_distortion_maps.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_generate_distortion_maps.py:9: in 377s from dxtbx.format.Format import Reader 377s /usr/lib/python3/dist-packages/dxtbx/format/Format.py:22: in 377s from dxtbx.model import MultiAxisGoniometer 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/command_line/test_generate_mask.py ___________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_generate_mask.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_generate_mask.py:7: in 377s from dxtbx.model import ExperimentList 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/command_line/test_import.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_import.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/dxtbx/imageset.py:14: in 377s from .dxtbx_imageset_ext import ( 377s E ModuleNotFoundError: No module named 'dxtbx.dxtbx_imageset_ext' 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_import.py:11: in 377s from dxtbx.imageset import ImageSequence 377s /usr/lib/python3/dist-packages/dxtbx/imageset.py:24: in 377s from dxtbx_imageset_ext import ( # type: ignore 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s ____________ ERROR collecting tests/command_line/test_import_xds.py ____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_import_xds.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_import_xds.py:6: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______ ERROR collecting tests/command_line/test_indexed_as_integrated.py _______ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_indexed_as_integrated.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_indexed_as_integrated.py:6: in 377s import iotbx.merging_statistics 377s /usr/lib/python3/dist-packages/iotbx/merging_statistics.py:18: in 377s from scitbx.array_family import flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________ ERROR collecting tests/command_line/test_integrate.py _____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_integrate.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_integrate.py:13: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/command_line/test_merge.py _______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_merge.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_merge.py:11: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _______ ERROR collecting tests/command_line/test_missing_reflections.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_missing_reflections.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_missing_reflections.py:3: in 377s from dials.command_line import missing_reflections 377s /usr/lib/python3/dist-packages/dials/command_line/missing_reflections.py:23: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_model_background.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_model_background.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_model_background.py:11: in 377s from scitbx.array_family import flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_modify_geometry.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_modify_geometry.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_modify_geometry.py:10: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/command_line/test_plot_Fo_vs_Fc.py ___________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_plot_Fo_vs_Fc.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_plot_Fo_vs_Fc.py:3: in 377s from dials.command_line import plot_Fo_vs_Fc 377s /usr/lib/python3/dist-packages/dials/command_line/plot_Fo_vs_Fc.py:16: in 377s from iotbx import mtz 377s /usr/lib/python3/dist-packages/iotbx/mtz/__init__.py:2: in 377s import cctbx.array_family.flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____ ERROR collecting tests/command_line/test_plot_scan_varying_model.py ______ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_plot_scan_varying_model.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_plot_scan_varying_model.py:5: in 377s from dials.command_line import plot_scan_varying_model 377s /usr/lib/python3/dist-packages/dials/command_line/plot_scan_varying_model.py:11: in 377s from dials.algorithms.refinement.rotation_decomposition import ( 377s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 377s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory # noqa: E402 377s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:11: in 377s from dxtbx.model.experiment_list import ExperimentList 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_powder_calibrate.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_powder_calibrate.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_powder_calibrate.py:7: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____________ ERROR collecting tests/command_line/test_predict.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_predict.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_predict.py:8: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _ ERROR collecting tests/command_line/test_preservation_of_experiment_identifiers.py _ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_preservation_of_experiment_identifiers.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_preservation_of_experiment_identifiers.py:6: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/command_line/test_refine.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_refine.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_refine.py:21: in 377s from dxtbx.model import Beam, Crystal, Detector, Experiment, Goniometer 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____ ERROR collecting tests/command_line/test_refine_bravais_settings.py ______ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_refine_bravais_settings.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_refine_bravais_settings.py:11: in 377s from cctbx import sgtbx, uctbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____________ ERROR collecting tests/command_line/test_reindex.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_reindex.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_reindex.py:11: in 377s from cctbx import sgtbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________ ERROR collecting tests/command_line/test_rs_mapper.py _____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_rs_mapper.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_rs_mapper.py:9: in 377s from iotbx import ccp4_map 377s /usr/lib/python3/dist-packages/iotbx/ccp4_map/__init__.py:2: in 377s import cctbx.array_family.flex as flex# import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _______ ERROR collecting tests/command_line/test_search_beam_position.py _______ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_search_beam_position.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_search_beam_position.py:9: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/command_line/test_sequence_to_stills.py ________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_sequence_to_stills.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_sequence_to_stills.py:6: in 377s from dxtbx.model.experiment_list import ExperimentListFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _______________ ERROR collecting tests/command_line/test_show.py _______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_show.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_show.py:8: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/command_line/test_slice_sequence.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_slice_sequence.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_slice_sequence.py:8: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_sort_reflections.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_sort_reflections.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_sort_reflections.py:6: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/command_line/test_split_experiments.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_split_experiments.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_split_experiments.py:10: in 377s from dxtbx.model import Beam, Experiment, ExperimentList 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_split_still_data.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_split_still_data.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_split_still_data.py:8: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________ ERROR collecting tests/command_line/test_ssx_index.py _____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_ssx_index.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_ssx_index.py:11: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/command_line/test_ssx_integrate.py ___________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_ssx_integrate.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_ssx_integrate.py:10: in 377s from dxtbx.serialize import load 377s /usr/lib/python3/dist-packages/dxtbx/serialize/load.py:6: in 377s from dxtbx.model.crystal import CrystalFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____ ERROR collecting tests/command_line/test_stereographic_projections.py _____ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_stereographic_projections.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_stereographic_projections.py:9: in 377s from dials.command_line import stereographic_projection 377s /usr/lib/python3/dist-packages/dials/command_line/stereographic_projection.py:12: in 377s import iotbx.phil 377s /usr/lib/python3/dist-packages/iotbx/phil.py:6: in 377s from cctbx import sgtbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/command_line/test_stills_process.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_stills_process.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_stills_process.py:11: in 377s from dxtbx.format.FormatCBFCspad import FormatCBFCspadInMemory 377s /usr/lib/python3/dist-packages/dxtbx/format/FormatCBFCspad.py:7: in 377s from cctbx.eltbx import attenuation_coefficient 377s /usr/lib/python3/dist-packages/cctbx/eltbx/attenuation_coefficient.py:2: in 377s from scitbx.array_family import flex # import dependency 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____________ ERROR collecting tests/command_line/test_symmetry.py _____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_symmetry.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_symmetry.py:11: in 377s from cctbx import crystal, sgtbx, uctbx 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/command_line/test_two_theta_refine.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/command_line/test_two_theta_refine.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/command_line/test_two_theta_refine.py:13: in 377s from dxtbx.model.experiment_list import ExperimentListFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________________ ERROR collecting tests/report/test_analysis.py ________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/report/test_analysis.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/report/test_analysis.py:7: in 377s from cctbx import miller 377s /usr/lib/python3/dist-packages/cctbx/miller/__init__.py:3: in 377s import cctbx.sgtbx 377s /usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py:2: in 377s from cctbx import uctbx 377s /usr/lib/python3/dist-packages/cctbx/uctbx/__init__.py:2: in 377s import cctbx.array_family.flex # import dependency 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________________ ERROR collecting tests/report/test_plots.py __________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/report/test_plots.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/report/test_plots.py:13: in 377s from cctbx import crystal, miller, uctbx 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____________________ ERROR collecting tests/test_phil.py ______________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/test_phil.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/test_phil.py:5: in 377s import dials.util.phil 377s /usr/lib/python3/dist-packages/dials/util/phil.py:8: in 377s from dxtbx.model.experiment_list import ExperimentListFactory 377s /usr/lib/python3/dist-packages/dxtbx/model/__init__.py:11: in 377s import cctbx.crystal 377s /usr/lib/python3/dist-packages/cctbx/crystal/__init__.py:3: in 377s from cctbx.array_family import flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________________ ERROR collecting tests/test_pychef.py _____________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/test_pychef.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/test_pychef.py:5: in 377s import iotbx.mtz 377s /usr/lib/python3/dist-packages/iotbx/mtz/__init__.py:2: in 377s import cctbx.array_family.flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________ ERROR collecting tests/test_scan_varying_integration_bug.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/test_scan_varying_integration_bug.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/test_scan_varying_integration_bug.py:6: in 377s import iotbx.mtz 377s /usr/lib/python3/dist-packages/iotbx/mtz/__init__.py:2: in 377s import cctbx.array_family.flex 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________________ ERROR collecting tests/test_scitbx.py _____________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/test_scitbx.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 377s exec(co, module.__dict__) 377s tests/test_scitbx.py:3: in 377s from scitbx.array_family import flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________________ ERROR collecting tests/util/test_ascii_art.py _________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_ascii_art.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/util/test_batch_handling.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_batch_handling.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/util/test_detect_blanks.py _______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_detect_blanks.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________ ERROR collecting tests/util/test_exception_handler.py _____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_exception_handler.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/util/test_exclude_images.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_exclude_images.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/util/test_export_bitmaps.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_export_bitmaps.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________________ ERROR collecting tests/util/test_export_mtz.py ________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_export_mtz.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________ ERROR collecting tests/util/test_filter_reflections_export.py _________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_filter_reflections_export.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ___________ ERROR collecting tests/util/test_htcondor_job_classad.py ___________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_htcondor_job_classad.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ______________ ERROR collecting tests/util/test_image_grouping.py ______________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_image_grouping.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ___________________ ERROR collecting tests/util/test_log.py ____________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_log.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________________ ERROR collecting tests/util/test_masking.py __________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_masking.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ___________ ERROR collecting tests/util/test_missing_reflections.py ____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_missing_reflections.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ____________________ ERROR collecting tests/util/test_mp.py ____________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_mp.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/util/test_multi_dataset_handling.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_multi_dataset_handling.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________________ ERROR collecting tests/util/test_nexus.py ___________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_nexus.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________ ERROR collecting tests/util/test_nexus_multi_experiment.py __________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_nexus_multi_experiment.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________________ ERROR collecting tests/util/test_observer.py _________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_observer.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _________________ ERROR collecting tests/util/test_options.py __________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_options.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s _____________ ERROR collecting tests/util/test_python_streambuf.py _____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_python_streambuf.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________________ ERROR collecting tests/util/test_reference.py _________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_reference.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ________________ ERROR collecting tests/util/test_render_3d.py _________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_render_3d.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s ___________ ERROR collecting tests/util/test_resolution_analysis.py ____________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_resolution_analysis.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s __________________ ERROR collecting tests/util/test_slice.py ___________________ 377s ImportError while importing test module '/tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/util/test_slice.py'. 377s Hint: make sure your test modules/packages have valid Python names. 377s Traceback: 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 377s try: mod = __import__(name) 377s E ImportError: /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s 377s During handling of the above exception, another exception occurred: 377s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 377s mod = import_path( 377s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 377s importlib.import_module(module_name) 377s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 377s return _bootstrap._gcd_import(name[level:], package, level) 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1310: in _find_and_load_unlocked 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s :1387: in _gcd_import 377s ??? 377s :1360: in _find_and_load 377s ??? 377s :1331: in _find_and_load_unlocked 377s ??? 377s :935: in _load_unlocked 377s ??? 377s :999: in exec_module 377s ??? 377s :488: in _call_with_frames_removed 377s ??? 377s tests/util/__init__.py:7: in 377s from dials.array_family import flex 377s /usr/lib/python3/dist-packages/dials/array_family/flex.py:3: in 377s from cctbx.array_family.flex import ( # noqa: F401; lgtm 377s /usr/lib/python3/dist-packages/cctbx/array_family/flex.py:2: in 377s import scitbx.array_family.flex 377s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:12: in 377s bp.import_ext("scitbx_array_family_flex_ext") 377s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 377s raise ImportError( 377s E ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s E sys.path: 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/framework 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/array_family 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/symmetry 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/statistics 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/spot_finding 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/simulation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/shoebox 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/reflection_basis 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s E /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s E /usr/lib/python312.zip 377s E /usr/lib/python3.12 377s E /usr/lib/python3.12/lib-dynload 377s E /usr/local/lib/python3.12/dist-packages 377s E /usr/lib/python3/dist-packages 377s E /usr/lib/python3/dist-packages/setuptools/_vendor 377s =============================== warnings summary =============================== 377s ../../../usr/lib/python3/dist-packages/dials/extensions/__init__.py:3 377s /usr/lib/python3/dist-packages/dials/extensions/__init__.py:3: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 377s import pkg_resources 377s 377s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 377s =========================== short test summary info ============================ 377s ERROR tests/algorithms/background/test_gmodel.py 377s ERROR tests/algorithms/background/test_outlier_rejector.py 377s ERROR tests/algorithms/clustering/test_observers.py 377s ERROR tests/algorithms/clustering/test_plots.py 377s ERROR tests/algorithms/clustering/test_unit_cell.py 377s ERROR tests/algorithms/correlation/test_analysis.py 377s ERROR tests/algorithms/image/threshold/test_local.py 377s ERROR tests/algorithms/indexing/basis_vector_search - ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s sys.path: 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s /usr/lib/python312.zip 377s /usr/lib/python3.12 377s /usr/lib/python3.12/lib-dynload 377s /usr/local/lib/python3.12/dist-packages 377s /usr/lib/python3/dist-packages 377s ERROR tests/algorithms/indexing/lattice_search/test_lattice_search.py 377s ERROR tests/algorithms/indexing/ssx/test_analysis.py 377s ERROR tests/algorithms/indexing/test_assign_indices.py 377s ERROR tests/algorithms/indexing/test_compare_orientation_matrices.py 377s ERROR tests/algorithms/indexing/test_index.py 377s ERROR tests/algorithms/indexing/test_max_cell.py 377s ERROR tests/algorithms/indexing/test_model_evaluation.py 377s ERROR tests/algorithms/indexing/test_non_primitive_basis.py 377s ERROR tests/algorithms/indexing/test_phi_scan.py 377s ERROR tests/algorithms/indexing/test_symmetry.py 377s ERROR tests/algorithms/integration/profile/test_profile_fitting.py 377s ERROR tests/algorithms/integration/ssx/test_ellipsoid_integrate.py 377s ERROR tests/algorithms/integration/test_corrections.py 377s ERROR tests/algorithms/integration/test_filtering.py 377s ERROR tests/algorithms/integration/test_integrator.py 377s ERROR tests/algorithms/integration/test_kapton.py 377s ERROR tests/algorithms/integration/test_parallel_integrator.py 377s ERROR tests/algorithms/integration/test_processor.py 377s ERROR tests/algorithms/integration/test_simple_integrate.py 377s ERROR tests/algorithms/merging/test_french_wilson.py 377s ERROR tests/algorithms/merging/test_merge.py 377s ERROR tests/algorithms/polygon/clip/test_clipping.py 377s ERROR tests/algorithms/profile_model/ellipsoid - ImportError: __import__("scitbx_array_family_flex_ext"): /lib/x86_64-linux-gnu/libboost_python313.so.1.83.0: undefined symbol: PyObject_DelAttr 377s sys.path: 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/profile_model 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/polygon/clip 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/integration/ssx 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/ssx 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/threshold 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/filter 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/fill_holes 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/connected_components 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/image/centroid 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp/tests/algorithms/background 377s /tmp/autopkgtest.6H5LlJ/autopkgtest_tmp 377s /usr/lib/python312.zip 377s /usr/lib/python3.12 377s /usr/lib/python3.12/lib-dynload 377s /usr/local/lib/python3.12/dist-packages 377s /usr/lib/python3/dist-packages 377s /usr/lib/python3/dist-packages/setuptools/_vendor 377s ERROR tests/algorithms/profile_model/test_calculator.py 377s ERROR tests/algorithms/refinement/test_angle_derivatives_wrt_vector_elts.py 377s ERROR tests/algorithms/refinement/test_centroid_outlier.py 377s ERROR tests/algorithms/refinement/test_constraints.py 377s ERROR tests/algorithms/refinement/test_crystal_parameters.py 377s ERROR tests/algorithms/refinement/test_cspad_refinement.py 377s ERROR tests/algorithms/refinement/test_detector_parameters.py 377s ERROR tests/algorithms/refinement/test_finite_diffs.py 377s ERROR tests/algorithms/refinement/test_goniometer_parameters.py 377s ERROR tests/algorithms/refinement/test_multi_experiment_refinement.py 377s ERROR tests/algorithms/refinement/test_multi_panel_detector_parameterisation.py 377s ERROR tests/algorithms/refinement/test_orientation_refinement.py 377s ERROR tests/algorithms/refinement/test_parameter_auto_reduction.py 377s ERROR tests/algorithms/refinement/test_prediction_parameters.py 377s ERROR tests/algorithms/refinement/test_refine_multi_stills.py 377s ERROR tests/algorithms/refinement/test_refine_multi_wedges.py 377s ERROR tests/algorithms/refinement/test_refiner_config.py 377s ERROR tests/algorithms/refinement/test_refiner_units.py 377s ERROR tests/algorithms/refinement/test_reflection_manager.py 377s ERROR tests/algorithms/refinement/test_restraints_parameterisation.py 377s ERROR tests/algorithms/refinement/test_rotation_decomposition.py 377s ERROR tests/algorithms/refinement/test_scan_varying_beam_refinement.py 377s ERROR tests/algorithms/refinement/test_scan_varying_block_calculation.py 377s ERROR tests/algorithms/refinement/test_scan_varying_model_parameters.py 377s ERROR tests/algorithms/refinement/test_scan_varying_prediction_parameters.py 377s ERROR tests/algorithms/refinement/test_stills_prediction_parameters.py 377s ERROR tests/algorithms/refinement/test_stills_spherical_relp_derivatives.py 377s ERROR tests/algorithms/refinement/test_sv_multi_panel_refinement.py 377s ERROR tests/algorithms/refinement/test_two_theta_refinement.py 377s ERROR tests/algorithms/refinement/test_xfel_metrology.py 377s ERROR tests/algorithms/reflection_basis/test_beam_vector_map.py 377s ERROR tests/algorithms/reflection_basis/test_coordinate_system.py 377s ERROR tests/algorithms/reflection_basis/test_grid_index_generator.py 377s ERROR tests/algorithms/reflection_basis/test_map_frames.py 377s ERROR tests/algorithms/reflection_basis/test_transform.py 377s ERROR tests/algorithms/scaling/cross_validation/test_crossvalidation.py 377s ERROR tests/algorithms/scaling/test_Ih_table.py 377s ERROR tests/algorithms/scaling/test_basis_function.py 377s ERROR tests/algorithms/scaling/test_combine_intensities.py 377s ERROR tests/algorithms/scaling/test_error_model.py 377s ERROR tests/algorithms/scaling/test_gaussian_smoother.py 377s ERROR tests/algorithms/scaling/test_model.py 377s ERROR tests/algorithms/scaling/test_observers.py 377s ERROR tests/algorithms/scaling/test_outlier_rejection.py 377s ERROR tests/algorithms/scaling/test_param_manager.py 377s ERROR tests/algorithms/scaling/test_plots.py 377s ERROR tests/algorithms/scaling/test_reflection_selection.py 377s ERROR tests/algorithms/scaling/test_scale.py 377s ERROR tests/algorithms/scaling/test_scale_and_filter.py 377s ERROR tests/algorithms/scaling/test_scale_components.py 377s ERROR tests/algorithms/scaling/test_scaler.py 377s ERROR tests/algorithms/scaling/test_scaler_factory.py 377s ERROR tests/algorithms/scaling/test_scaling_library.py 377s ERROR tests/algorithms/scaling/test_scaling_restraints.py 377s ERROR tests/algorithms/scaling/test_scaling_utilities.py 377s ERROR tests/algorithms/scaling/test_target_function.py 377s ERROR tests/algorithms/scaling/test_targetscaler.py 377s ERROR tests/algorithms/scaling/test_tof_scaling.py 377s ERROR tests/algorithms/scaling/test_weighting.py 377s ERROR tests/algorithms/shoebox/test_bbox_calculator.py 377s ERROR tests/algorithms/shoebox/test_mask_foreground.py 377s ERROR tests/algorithms/shoebox/test_mask_overlapping.py 377s ERROR tests/algorithms/shoebox/test_partiality_calculator.py 377s ERROR tests/algorithms/simulation/test_reciprocal_space.py 377s ERROR tests/algorithms/spot_finding/test_per_image_analysis.py 377s ERROR tests/algorithms/spot_prediction/test_reeke_index_generator.py 377s ERROR tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py 377s ERROR tests/algorithms/spot_prediction/test_scan_varying_predictor.py 377s ERROR tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py 377s ERROR tests/algorithms/statistics/test_binned_statistics.py 377s ERROR tests/algorithms/statistics/test_delta_cchalf_algorithm.py 377s ERROR tests/algorithms/symmetry/absences/test_laue_group_info.py 377s ERROR tests/algorithms/symmetry/absences/test_plots.py 377s ERROR tests/algorithms/symmetry/absences/test_screw_axes.py 377s ERROR tests/algorithms/symmetry/cosym/test_cosym_analyse_datasets.py 377s ERROR tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py 377s ERROR tests/algorithms/symmetry/cosym/test_cosym_target.py 377s ERROR tests/algorithms/symmetry/cosym/test_observers.py 377s ERROR tests/algorithms/symmetry/cosym/test_plots.py 377s ERROR tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py 377s ERROR tests/algorithms/symmetry/test_laue_group.py 377s ERROR tests/algorithms/symmetry/test_origin.py 377s ERROR tests/algorithms/symmetry/test_reindex_to_reference.py 377s ERROR tests/algorithms/symmetry/test_score_symmetry_element_subgroup.py 377s ERROR tests/array_family/test_identifiers_handling.py 377s ERROR tests/array_family/test_reflection_table.py 377s ERROR tests/command_line/test_anvil_correction.py 377s ERROR tests/command_line/test_apply_mask.py 377s ERROR tests/command_line/test_assign_experiment_identifiers.py 377s ERROR tests/command_line/test_cluster_unit_cell.py 377s ERROR tests/command_line/test_combine_experiments.py 377s ERROR tests/command_line/test_compute_delta_cchalf.py 377s ERROR tests/command_line/test_correlation_matrix.py 377s ERROR tests/command_line/test_cosym.py 377s ERROR tests/command_line/test_damage_analysis.py 377s ERROR tests/command_line/test_detect_blanks.py 377s ERROR tests/command_line/test_estimate_resolution.py 377s ERROR tests/command_line/test_export.py 377s ERROR tests/command_line/test_export_bitmaps.py 377s ERROR tests/command_line/test_export_xds.py 377s ERROR tests/command_line/test_filter_reflections.py 377s ERROR tests/command_line/test_find_rotation_axis.py 377s ERROR tests/command_line/test_find_spots.py 377s ERROR tests/command_line/test_frame_orientations.py 377s ERROR tests/command_line/test_generate_distortion_maps.py 377s ERROR tests/command_line/test_generate_mask.py 377s ERROR tests/command_line/test_import.py 377s ERROR tests/command_line/test_import_xds.py 377s ERROR tests/command_line/test_indexed_as_integrated.py 377s ERROR tests/command_line/test_integrate.py 377s ERROR tests/command_line/test_merge.py 377s ERROR tests/command_line/test_missing_reflections.py 377s ERROR tests/command_line/test_model_background.py 377s ERROR tests/command_line/test_modify_geometry.py 377s ERROR tests/command_line/test_plot_Fo_vs_Fc.py 377s ERROR tests/command_line/test_plot_scan_varying_model.py 377s ERROR tests/command_line/test_powder_calibrate.py 377s ERROR tests/command_line/test_predict.py 377s ERROR tests/command_line/test_preservation_of_experiment_identifiers.py 377s ERROR tests/command_line/test_refine.py 377s ERROR tests/command_line/test_refine_bravais_settings.py 377s ERROR tests/command_line/test_reindex.py 377s ERROR tests/command_line/test_rs_mapper.py 377s ERROR tests/command_line/test_search_beam_position.py 377s ERROR tests/command_line/test_sequence_to_stills.py 377s ERROR tests/command_line/test_show.py 377s ERROR tests/command_line/test_slice_sequence.py 377s ERROR tests/command_line/test_sort_reflections.py 377s ERROR tests/command_line/test_split_experiments.py 377s ERROR tests/command_line/test_split_still_data.py 377s ERROR tests/command_line/test_ssx_index.py 377s ERROR tests/command_line/test_ssx_integrate.py 377s ERROR tests/command_line/test_stereographic_projections.py 377s ERROR tests/command_line/test_stills_process.py 377s ERROR tests/command_line/test_symmetry.py 377s ERROR tests/command_line/test_two_theta_refine.py 377s ERROR tests/report/test_analysis.py 377s ERROR tests/report/test_plots.py 377s ERROR tests/test_phil.py 377s ERROR tests/test_pychef.py 377s ERROR tests/test_scan_varying_integration_bug.py 377s ERROR tests/test_scitbx.py 377s ERROR tests/util/test_ascii_art.py 377s ERROR tests/util/test_batch_handling.py 377s ERROR tests/util/test_detect_blanks.py 377s ERROR tests/util/test_exception_handler.py 377s ERROR tests/util/test_exclude_images.py 377s ERROR tests/util/test_export_bitmaps.py 377s ERROR tests/util/test_export_mtz.py 377s ERROR tests/util/test_filter_reflections_export.py 377s ERROR tests/util/test_htcondor_job_classad.py 377s ERROR tests/util/test_image_grouping.py 377s ERROR tests/util/test_log.py 377s ERROR tests/util/test_masking.py 377s ERROR tests/util/test_missing_reflections.py 377s ERROR tests/util/test_mp.py 377s ERROR tests/util/test_multi_dataset_handling.py 377s ERROR tests/util/test_nexus.py 377s ERROR tests/util/test_nexus_multi_experiment.py 377s ERROR tests/util/test_observer.py 377s ERROR tests/util/test_options.py 377s ERROR tests/util/test_python_streambuf.py 377s ERROR tests/util/test_reference.py 377s ERROR tests/util/test_render_3d.py 377s ERROR tests/util/test_resolution_analysis.py 377s ERROR tests/util/test_slice.py 377s !!!!!!!!!!!!!!!!!! Interrupted: 197 errors during collection !!!!!!!!!!!!!!!!!!! 377s ======================= 1 warning, 197 errors in 25.20s ======================== 377s autopkgtest [04:57:01]: test command1: -----------------------] 377s autopkgtest [04:57:01]: test command1: - - - - - - - - - - results - - - - - - - - - - 377s command1 FAIL non-zero exit status 2 378s autopkgtest [04:57:02]: @@@@@@@@@@@@@@@@@@@@ summary 378s command1 FAIL non-zero exit status 2 481s nova [W] Skipping flock for amd64 481s Creating nova instance adt-plucky-amd64-dials-20250219-042709-juju-7f2275-prod-proposed-migration-environment-15-c50ce731-51ad-4e0e-a571-f1b51ab7fac7 from image adt/ubuntu-plucky-amd64-server-20250219.img (UUID 90711abf-916f-4a80-845a-825250a78697)... 481s nova [W] Timed out waiting for 06b7f7b6-7190-408a-a23c-9603ab281925 to get deleted.