0s autopkgtest [03:41:11]: starting date and time: 2024-11-17 03:41:11+0000 0s autopkgtest [03:41:11]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [03:41:11]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.78j9q2ym/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dials --apt-upgrade dials --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dials/3.22.1+dfsg3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-8.secgroup --name adt-plucky-amd64-dials-20241117-034110-juju-7f2275-prod-proposed-migration-environment-2-0dd21031-9475-45c2-a1ca-2bc0f790f19f --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 34s autopkgtest [03:41:45]: testbed dpkg architecture: amd64 34s autopkgtest [03:41:45]: testbed apt version: 2.9.8 34s autopkgtest [03:41:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 34s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 34s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB] 34s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.9 kB] 34s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [966 kB] 35s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [168 kB] 35s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [108 kB] 35s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 35s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 35s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [784 kB] 35s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9728 B] 35s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1116 B] 35s Fetched 2548 kB in 0s (7840 kB/s) 35s Reading package lists... 36s Reading package lists... 36s Building dependency tree... 36s Reading state information... 37s Calculating upgrade... 37s The following NEW packages will be installed: 37s python3.13-gdbm 37s The following packages will be upgraded: 37s debianutils dmidecode libftdi1-2 libnvme1t64 python3-gdbm 37s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 37s Need to get 325 kB of archives. 37s After this operation, 101 kB of additional disk space will be used. 37s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 debianutils amd64 5.21 [92.9 kB] 37s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 dmidecode amd64 3.6-2 [73.6 kB] 37s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 37s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 37s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libftdi1-2 amd64 1.5-7build1 [30.2 kB] 37s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libnvme1t64 amd64 1.11-2 [88.7 kB] 37s Fetched 325 kB in 0s (5850 kB/s) 37s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 37s Preparing to unpack .../debianutils_5.21_amd64.deb ... 37s Unpacking debianutils (5.21) over (5.20) ... 37s Setting up debianutils (5.21) ... 38s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 38s Preparing to unpack .../dmidecode_3.6-2_amd64.deb ... 38s Unpacking dmidecode (3.6-2) over (3.6-1) ... 38s Selecting previously unselected package python3.13-gdbm. 38s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 38s Unpacking python3.13-gdbm (3.13.0-2) ... 38s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 38s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 38s Preparing to unpack .../libftdi1-2_1.5-7build1_amd64.deb ... 38s Unpacking libftdi1-2:amd64 (1.5-7build1) over (1.5-7) ... 38s Preparing to unpack .../libnvme1t64_1.11-2_amd64.deb ... 38s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 38s Setting up libftdi1-2:amd64 (1.5-7build1) ... 38s Setting up libnvme1t64 (1.11-2) ... 38s Setting up dmidecode (3.6-2) ... 38s Setting up python3.13-gdbm (3.13.0-2) ... 38s Setting up python3-gdbm:amd64 (3.12.7-1) ... 38s Processing triggers for man-db (2.13.0-1) ... 39s Processing triggers for libc-bin (2.40-1ubuntu3) ... 39s Reading package lists... 39s Building dependency tree... 39s Reading state information... 40s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 40s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 40s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 40s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 40s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 41s Reading package lists... 41s Reading package lists... 41s Building dependency tree... 41s Reading state information... 42s Calculating upgrade... 42s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 42s Reading package lists... 42s Building dependency tree... 42s Reading state information... 42s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 43s autopkgtest [03:41:54]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 43s autopkgtest [03:41:54]: @@@@@@@@@@@@@@@@@@@@ apt-source dials 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe dials 3.22.1+dfsg3-1 (dsc) [2713 B] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe dials 3.22.1+dfsg3-1 (tar) [8378 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe dials 3.22.1+dfsg3-1 (diff) [13.5 kB] 44s gpgv: Signature made Wed Nov 13 11:42:44 2024 UTC 44s gpgv: using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC 44s gpgv: Can't check signature: No public key 44s dpkg-source: warning: cannot verify inline signature for ./dials_3.22.1+dfsg3-1.dsc: no acceptable signature found 44s autopkgtest [03:41:55]: testing package dials version 3.22.1+dfsg3-1 44s autopkgtest [03:41:55]: build not needed 45s autopkgtest [03:41:56]: test command1: preparing testbed 45s Reading package lists... 45s Building dependency tree... 45s Reading state information... 45s Starting pkgProblemResolver with broken count: 1 45s Starting 2 pkgProblemResolver with broken count: 1 45s Investigating (0) python3-dials:amd64 < none -> 3.22.1+dfsg3-1 @un puN Ib > 45s Broken python3-dials:amd64 Depends on libjs-bootstrap:amd64 < none | 3.4.1+dfsg-3 @un uH > 45s Considering libjs-bootstrap:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated fonts-glyphicons-halflings:amd64 45s Re-Instated libjs-bootstrap:amd64 45s Broken python3-dials:amd64 Depends on libjs-jquery:amd64 < none | 3.6.1+dfsg+~3.5.14-1 @un uH > 45s Considering libjs-jquery:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated libjs-jquery:amd64 45s Broken python3-dials:amd64 Depends on libjs-katex:amd64 < none | 0.16.10+~cs6.1.0-2 @un uH > 45s Considering libjs-katex:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated fonts-katex:amd64 45s Re-Instated libjs-katex:amd64 45s Broken python3-dials:amd64 Depends on libjs-mathjax:amd64 < none | 2.7.9+dfsg-1 @un uH > 45s Considering libjs-mathjax:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated fonts-mathjax:amd64 45s Re-Instated libjs-mathjax:amd64 45s Broken python3-dials:amd64 Depends on python3-plotly:amd64 < none | 5.20.0+dfsg-1 @un uH > 45s Considering python3-plotly:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated python3-tz:amd64 45s Re-Instated python3-decorator:amd64 45s Re-Instated python3-fastjsonschema:amd64 45s Re-Instated python3-platformdirs:amd64 45s Re-Instated python3-traitlets:amd64 45s Re-Instated python3-jupyter-core:amd64 45s Re-Instated python3-nbformat:amd64 45s Re-Instated python3-tenacity:amd64 45s Re-Instated python3-plotly:amd64 45s Broken python3-dials:amd64 Depends on python3-cctbx:amd64 < none | 2023.12+ds2+~3.17.0+ds1-4build3 @un uH > 45s Considering python3-cctbx:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated libann-cctbx0:amd64 45s Re-Instated libann-cctbx-dev:amd64 45s Re-Instated libgomp1:amd64 45s Re-Instated libitm1:amd64 45s Re-Instated libasan8:amd64 45s Re-Instated liblsan0:amd64 45s Re-Instated libtsan2:amd64 45s Re-Instated libubsan1:amd64 45s Re-Instated libhwasan0:amd64 45s Re-Instated libquadmath0:amd64 45s Re-Instated libgcc-14-dev:amd64 45s Re-Instated libstdc++-14-dev:amd64 45s Re-Instated libboost1.83-dev:amd64 45s Re-Instated libboost-python1.83.0:amd64 45s Re-Instated libexpat1-dev:amd64 45s Re-Instated zlib1g-dev:amd64 45s Re-Instated libpython3.12-dev:amd64 45s Re-Instated libpython3-dev:amd64 45s Reinst Failed because of protected python3:i386 45s Reinst Failed because of python3-dev:i386 45s Reinst Failed because of libboost-python1.83-dev:amd64 45s Reinst Failed because of libboost-python-dev:amd64 45s Reinst Failed because of libcctbx-dev:amd64 45s Considering python3-cctbx:amd64 1 as a solution to python3-dials:amd64 0 45s Broken python3-dials:amd64 Depends on python3-ordered-set:amd64 < none | 4.1.0-1 @un uH > 45s Considering python3-ordered-set:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated python3-ordered-set:amd64 45s Broken python3-dials:amd64 Depends on python3-pandas:amd64 < none | 2.2.3+dfsg-5 @un uH > 45s Considering python3-pandas:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated python3-six:amd64 45s Re-Instated python3-dateutil:amd64 45s Re-Instated libblas3:amd64 45s Re-Instated libgfortran5:amd64 45s Re-Instated liblapack3:amd64 45s Re-Instated python3-numpy:amd64 45s Re-Instated python3-pandas-lib:amd64 45s Re-Instated python3-pandas:amd64 45s Broken python3-dials:amd64 Depends on python3-psutil:amd64 < none | 5.9.8-2build2 @un uH > 45s Considering python3-psutil:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated python3-psutil:amd64 45s Broken python3-dials:amd64 Depends on python3-pyfai:amd64 < none | 2024.05-3build1 @un uH > 45s Considering python3-pyfai:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated python3-pyqt5.sip:amd64 45s Re-Instated libdouble-conversion3:amd64 45s Re-Instated libpcre2-16-0:amd64 45s Re-Instated libqt5core5t64:amd64 45s Re-Instated libqt5dbus5t64:amd64 45s Re-Instated fonts-dejavu-mono:amd64 45s Re-Instated fonts-dejavu-core:amd64 45s Re-Instated fontconfig-config:amd64 45s Re-Instated libfontconfig1:amd64 45s Re-Instated fontconfig:amd64 45s Re-Instated libglvnd0:amd64 45s Re-Instated libwayland-server0:amd64 45s Re-Instated libxcb-randr0:amd64 45s Re-Instated libdrm-amdgpu1:amd64 45s Re-Instated libpciaccess0:amd64 45s Re-Instated libdrm-intel1:amd64 45s Re-Instated libdrm-radeon1:amd64 45s Re-Instated libglapi-mesa:amd64 45s Re-Instated libx11-xcb1:amd64 45s Re-Instated libxcb-dri2-0:amd64 45s Re-Instated libxcb-dri3-0:amd64 45s Re-Instated libxcb-present0:amd64 45s Re-Instated libxcb-sync1:amd64 45s Re-Instated libxcb-xfixes0:amd64 45s Re-Instated libxshmfence1:amd64 45s Re-Instated mesa-libgallium:amd64 45s Re-Instated libgbm1:amd64 45s Re-Instated libwayland-client0:amd64 45s Re-Instated libxcb-shm0:amd64 45s Re-Instated libegl-mesa0:amd64 45s Re-Instated libegl1:amd64 45s Re-Instated libxcb-glx0:amd64 45s Re-Instated libxfixes3:amd64 45s Re-Instated libxxf86vm1:amd64 45s Re-Instated libvulkan1:amd64 45s Re-Instated libgl1-mesa-dri:amd64 45s Re-Instated libglx-mesa0:amd64 45s Re-Instated libglx0:amd64 45s Re-Instated libgl1:amd64 45s Re-Instated libgraphite2-3:amd64 45s Re-Instated libharfbuzz0b:amd64 45s Re-Instated x11-common:amd64 45s Re-Instated libice6:amd64 45s Re-Instated libmtdev1t64:amd64 45s Re-Instated libwacom-common:amd64 45s Re-Instated libwacom9:amd64 45s Re-Instated libinput-bin:amd64 45s Re-Instated libinput10:amd64 45s Re-Instated libjpeg-turbo8:amd64 45s Re-Instated libjpeg8:amd64 45s Re-Instated libmd4c0:amd64 45s Re-Instated libqt5network5t64:amd64 45s Re-Instated libsm6:amd64 45s Re-Instated libxcb-icccm4:amd64 45s Re-Instated libxcb-util1:amd64 45s Re-Instated libxcb-image0:amd64 45s Re-Instated libxcb-keysyms1:amd64 45s Re-Instated libxcb-render0:amd64 45s Re-Instated libxcb-render-util0:amd64 45s Re-Instated libxcb-shape0:amd64 45s Re-Instated libxcb-xinerama0:amd64 45s Re-Instated libxcb-xinput0:amd64 45s Re-Instated libxcb-xkb1:amd64 45s Re-Instated libxkbcommon-x11-0:amd64 45s Re-Instated libxrender1:amd64 45s Re-Instated libqt5gui5t64:amd64 45s Re-Instated libqt5widgets5t64:amd64 45s Re-Instated libqt5xml5t64:amd64 45s Re-Instated libqt5designer5:amd64 45s Re-Instated libqt5sql5t64:amd64 45s Re-Instated libqt5help5:amd64 45s Re-Instated libavahi-common-data:amd64 45s Re-Instated libavahi-common3:amd64 45s Re-Instated libavahi-client3:amd64 45s Re-Instated libcups2t64:amd64 45s Re-Instated libqt5printsupport5t64:amd64 45s Re-Instated libqt5test5t64:amd64 45s Re-Instated python3-pyqt5:amd64 45s Re-Instated libaec0:amd64 45s Re-Instated libsz2:amd64 45s Re-Instated libhdf5-103-1t64:amd64 45s Re-Instated libhdf5-hl-100t64:amd64 45s Re-Instated liblzf1:amd64 45s Re-Instated python3-h5py-serial:amd64 45s Re-Instated python3-h5py:amd64 45s Re-Instated libxslt1.1:amd64 45s Re-Instated python3-lxml:amd64 45s Re-Instated libjs-jquery-ui:amd64 45s Re-Instated fonts-lyx:amd64 45s Re-Instated python-matplotlib-data:amd64 45s Re-Instated libimagequant0:amd64 45s Re-Instated liblcms2-2:amd64 45s Re-Instated libopenjp2-7:amd64 45s Re-Instated libraqm0:amd64 45s Re-Instated libdeflate0:amd64 45s Re-Instated libjbig0:amd64 45s Re-Instated liblerc4:amd64 45s Re-Instated libsharpyuv0:amd64 45s Re-Instated libwebp7:amd64 45s Re-Instated libtiff6:amd64 45s Re-Instated libwebpdemux2:amd64 45s Re-Instated libwebpmux3:amd64 45s Re-Instated python3-pil:amd64 45s Re-Instated libtcl8.6:amd64 45s Re-Instated libxft2:amd64 45s Re-Instated libxss1:amd64 45s Re-Instated libtk8.6:amd64 45s Re-Instated python3.12-tk:amd64 45s Re-Instated python3.13-tk:amd64 45s Re-Instated tk8.6-blt2.5:amd64 45s Re-Instated blt:amd64 45s Re-Instated python3-tk:amd64 45s Re-Instated python3-pil.imagetk:amd64 45s Re-Instated python3-contourpy:amd64 45s Re-Instated python3-cycler:amd64 45s Re-Instated python3-brotli:amd64 45s Re-Instated python3-appdirs:amd64 45s Re-Instated python3-fs:amd64 45s Re-Instated python3-lz4:amd64 45s Re-Instated liblbfgsb0:amd64 45s Re-Instated python3-scipy:amd64 45s Re-Instated python3-mpmath:amd64 45s Re-Instated python3-sympy:amd64 45s Re-Instated python3-ufolib2:amd64 45s Re-Instated unicode-data:amd64 45s Re-Instated python3-fonttools:amd64 45s Re-Instated python3-kiwisolver:amd64 45s Re-Instated libqhull-r8.0:amd64 45s Re-Instated python3-matplotlib:amd64 45s Re-Instated python3-fabio:amd64 45s Re-Instated python3-numexpr:amd64 45s Re-Instated python3-hdf5plugin:amd64 45s Re-Instated python3-mako:amd64 45s Re-Instated libopengl0:amd64 45s Re-Instated libglu1-mesa:amd64 45s Re-Instated python3-opengl:amd64 45s Re-Instated ocl-icd-libopencl1:amd64 45s Re-Instated libpocl2-common:amd64 45s Re-Instated libllvm17t64:amd64 45s Re-Instated libclang-cpp17t64:amd64 45s Re-Instated libgc1:amd64 45s Re-Instated libobjc4:amd64 45s Re-Instated libobjc-14-dev:amd64 45s Re-Instated libclang-common-17-dev:amd64 45s Re-Instated llvm-17-linker-tools:amd64 45s Re-Instated libclang1-17t64:amd64 45s Re-Instated clang-17:amd64 45s Re-Instated libhwloc15:amd64 45s Re-Instated libpocl2t64:amd64 45s Re-Instated pocl-opencl-icd:amd64 45s Re-Instated python3-pytools:amd64 45s Re-Instated python3-pyopencl:amd64 45s Re-Instated libqt5opengl5t64:amd64 45s Re-Instated python3-pyqt5.qtopengl:amd64 45s Re-Instated libqt5svg5:amd64 45s Re-Instated python3-pyqt5.qtsvg:amd64 45s Re-Instated python3-comm:amd64 45s Re-Instated libbabeltrace1:amd64 45s Re-Instated libdebuginfod-common:amd64 45s Re-Instated libdebuginfod1t64:amd64 45s Re-Instated libipt2:amd64 45s Re-Instated libsource-highlight-common:amd64 45s Re-Instated libsource-highlight4t64:amd64 45s Re-Instated gdb:amd64 45s Re-Instated gcc-14-base:i386 45s Re-Instated libgcc-s1:i386 45s Re-Instated libc6:i386 45s Re-Instated libzstd1:i386 45s Re-Instated zlib1g:i386 45s Re-Instated libssl3t64:i386 45s Re-Instated libpython3.13-minimal:i386 45s Re-Instated libexpat1:i386 45s Re-Instated python3.13-minimal:i386 45s Re-Instated libbz2-1.0:i386 45s Re-Instated libdb5.3t64:i386 45s Re-Instated libffi8:i386 45s Re-Instated liblzma5:i386 45s Re-Instated libtinfo6:i386 45s Re-Instated libncursesw6:i386 45s Re-Instated libreadline8t64:i386 45s Re-Instated libsqlite3-0:i386 45s Re-Instated libuuid1:i386 45s Re-Instated libpython3.13-stdlib:i386 45s Re-Instated python3.13:i386 45s Re-Instated python3-coverage:amd64 45s Re-Instated python3-debugpy:amd64 45s Re-Instated python3-parso:amd64 45s Re-Instated python3-typeshed:amd64 45s Re-Instated python3-jedi:amd64 45s Re-Instated python3-matplotlib-inline:amd64 45s Re-Instated python3-ptyprocess:amd64 45s Re-Instated python3-pexpect:amd64 45s Re-Instated python3-wcwidth:amd64 45s Re-Instated python3-prompt-toolkit:amd64 45s Re-Instated python3-asttokens:amd64 45s Re-Instated python3-executing:amd64 45s Re-Instated python3-pure-eval:amd64 45s Re-Instated python3-stack-data:amd64 45s Re-Instated python3-ipython:amd64 45s Re-Instated python3-tornado:amd64 45s Re-Instated python3-py:amd64 45s Re-Instated libnorm1t64:amd64 45s Re-Instated libpgm-5.3-0t64:amd64 45s Re-Instated libsodium23:amd64 45s Re-Instated libzmq5:amd64 45s Re-Instated python3-zmq:amd64 45s Re-Instated python3-jupyter-client:amd64 45s Re-Instated python3-nest-asyncio:amd64 45s Re-Instated python3-ipykernel:amd64 45s Re-Instated libqt5charts5:amd64 45s Re-Instated python3-pyqt5.qtchart:amd64 45s Re-Instated libasyncns0:amd64 45s Re-Instated libogg0:amd64 45s Re-Instated libflac12t64:amd64 45s Re-Instated libmp3lame0:amd64 45s Re-Instated libmpg123-0t64:amd64 45s Re-Instated libopus0:amd64 45s Re-Instated libvorbis0a:amd64 45s Re-Instated libvorbisenc2:amd64 45s Re-Instated libsndfile1:amd64 45s Re-Instated libpulse0:amd64 45s Re-Instated libqt5multimedia5:amd64 45s Re-Instated libqt5multimediawidgets5:amd64 45s Re-Instated python3-pyqt5.qtmultimedia:amd64 45s Re-Instated libqt5positioning5:amd64 45s Re-Instated libqt5qml5:amd64 45s Re-Instated libqt5qmlmodels5:amd64 45s Re-Instated libqt5quick5:amd64 45s Re-Instated libqt5positioningquick5:amd64 45s Re-Instated libqt5location5:amd64 45s Re-Instated python3-pyqt5.qtpositioning:amd64 45s Re-Instated libqt5quickwidgets5:amd64 45s Re-Instated python3-pyqt5.qtquick:amd64 45s Re-Instated libqt5remoteobjects5:amd64 45s Re-Instated python3-pyqt5.qtremoteobjects:amd64 45s Re-Instated libqt5sensors5:amd64 45s Re-Instated python3-pyqt5.qtsensors:amd64 45s Re-Instated libqt5serialport5:amd64 45s Re-Instated python3-pyqt5.qtserialport:amd64 45s Re-Instated python3-pyqt5.qtsql:amd64 45s Re-Instated libqt5texttospeech5:amd64 45s Re-Instated python3-pyqt5.qttexttospeech:amd64 45s Re-Instated libqt5webchannel5:amd64 45s Re-Instated python3-pyqt5.qtwebchannel:amd64 45s Re-Instated libgstreamer1.0-0:amd64 45s Re-Instated liborc-0.4-0t64:amd64 45s Re-Instated libgstreamer-plugins-base1.0-0:amd64 45s Re-Instated libhyphen0:amd64 45s Re-Instated libwoff1:amd64 45s Re-Instated libqt5webkit5:amd64 45s Re-Instated python3-pyqt5.qtwebkit:amd64 45s Re-Instated libqt5websockets5:amd64 45s Re-Instated python3-pyqt5.qtwebsockets:amd64 45s Re-Instated libqt5xmlpatterns5:amd64 45s Re-Instated python3-pyqt5.qtxmlpatterns:amd64 45s Re-Instated python3-qtpy:amd64 45s Re-Instated python3-qtconsole:amd64 45s Re-Instated python3-pooch:amd64 45s Re-Instated python3-silx:amd64 45s Re-Instated python3-pyfai:amd64 45s Broken python3-dials:amd64 Depends on python3-sklearn:amd64 < none | 1.4.2+dfsg-6 @un uH > 45s Considering python3-sklearn:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated python3-joblib:amd64 45s Re-Instated python3-threadpoolctl:amd64 45s Re-Instated python3-sklearn-lib:amd64 45s Re-Instated python3-sklearn:amd64 45s Broken python3-dials:amd64 Depends on python3-tabulate:amd64 < none | 0.9.0-1 @un uH > 45s Considering python3-tabulate:amd64 1 as a solution to python3-dials:amd64 0 45s Re-Instated python3-tabulate:amd64 45s Broken python3-dials:amd64 Depends on libboost-python1.83.0-py313:amd64 < none @un H > 45s Considering libboost-python1.83.0:amd64 0 as a solution to python3-dials:amd64 0 45s Broken python3-dials:amd64 Depends on libboost-thread1.83.0:amd64 < none | 1.83.0-3.2ubuntu2 @un uH > (>= 1.83.0) 45s Considering libboost-thread1.83.0:amd64 0 as a solution to python3-dials:amd64 0 45s Re-Instated libboost-thread1.83.0:amd64 45s Broken python3-dials:amd64 Depends on libcctbx0:amd64 < none | 2023.12+ds2+~3.17.0+ds1-4build3 @un uH > (>= 2024.10+ds2+~3.22.1+ds1) 45s Considering libcctbx0:amd64 0 as a solution to python3-dials:amd64 0 45s Re-Instated libcbf1t64:amd64 45s Re-Instated libccp4-data:amd64 45s Re-Instated libccp4c0t64:amd64 45s Re-Instated libcctbx0:amd64 45s Done 45s Some packages could not be installed. This may mean that you have 45s requested an impossible situation or if you are using the unstable 45s distribution that some required packages have not yet been created 45s or been moved out of Incoming. 45s The following information may help to resolve the situation: 45s 45s The following packages have unmet dependencies: 46s python3-dials : Depends: python3-cctbx but it is not going to be installed 46s Depends: libboost-python1.83.0-py313 46s Depends: libcctbx0 (>= 2024.10+ds2+~3.22.1+ds1) but 2023.12+ds2+~3.17.0+ds1-4build3 is to be installed 46s E: Unable to correct problems, you have held broken packages. 46s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 46s Reading package lists... 46s Building dependency tree... 46s Reading state information... 46s Starting pkgProblemResolver with broken count: 0 46s Starting 2 pkgProblemResolver with broken count: 0 46s Done 47s The following additional packages will be installed: 47s adwaita-icon-theme at-spi2-common blt clang-18 dconf-gsettings-backend 47s dconf-service dials fontconfig fontconfig-config fonts-dejavu-core 47s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-katex 47s fonts-lato fonts-lyx fonts-mathjax gdb gtk-update-icon-cache 47s hicolor-icon-theme humanity-icon-theme libaec0 libann-cctbx-dev 47s libann-cctbx0 libantlr3c-3.4-0 libasan8 libasyncns0 libatk-bridge2.0-0t64 47s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 47s libavahi-common3 libbabeltrace1 libblas3 libboost-numpy1.83.0 47s libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 47s libboost-thread1.83.0 libboost-timer1.83.0 libboost1.83-dev libbrotli1 47s libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 47s libccp4f0t64 libcctbx-dev libcctbx0 libclang-common-18-dev libclang1-18 47s libcolord2 libcups2t64 libdatrie1 libdconf1 libdebuginfod-common 47s libdebuginfod1t64 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 47s libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 libexpat1-dev 47s libflac12t64 libfontconfig1 libgbm1 libgc1 libgcc-14-dev libgdk-pixbuf-2.0-0 47s libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 47s libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 47s libgraphite2-3 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 47s libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhdf5-103-1t64 47s libhdf5-hl-100t64 libhwasan0 libhwloc15 libhyphen0 libice6 libimagequant0 47s libinput-bin libinput10 libipt2 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 47s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-katex libjs-mathjax 47s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 47s liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmp3lame0 libmpg123-0t64 libmtdev1t64 47s libnetcdf19t64 libnorm1t64 libnotify4 libobjc-14-dev libobjc4 libogg0 47s libopengl0 libopenjp2-7 libopus0 liborc-0.4-0t64 libpango-1.0-0 47s libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 47s libpcre2-32-0 libpgm-5.3-0t64 libpixman-1-0 libpocl2-common libpocl2t64 47s libpulse0 libpython3-dev libpython3-stdlib libpython3.12-dev 47s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libqt5charts5 47s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 47s libqt5location5 libqt5multimedia5 libqt5multimediawidgets5 libqt5network5t64 47s libqt5opengl5t64 libqt5positioning5 libqt5positioningquick5 47s libqt5printsupport5t64 libqt5qml5 libqt5qmlmodels5 libqt5quick5 47s libqt5quickwidgets5 libqt5remoteobjects5 libqt5sensors5 libqt5serialport5 47s libqt5sql5t64 libqt5svg5 libqt5test5t64 libqt5texttospeech5 47s libqt5webchannel5 libqt5webkit5 libqt5websockets5 libqt5widgets5t64 47s libqt5xml5t64 libqt5xmlpatterns5 libquadmath0 libraqm0 libsharpyuv0 libsm6 47s libsndfile1 libsodium23 libsource-highlight-common libsource-highlight4t64 47s libssm2 libstdc++-14-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 47s libtk8.6 libtsan2 libubsan1 libvorbis0a libvorbisenc2 libvulkan1 47s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 47s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 47s libwoff1 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 47s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 47s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 47s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 47s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 47s libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 47s libxkbcommon-x11-0 libxkbcommon0 libxrandr2 libxrender1 libxshmfence1 47s libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzmq5 llvm-18-linker-tools 47s mesa-libgallium ocl-icd-libopencl1 pocl-opencl-icd pymol-data 47s python-matplotlib-data python3 python3-all python3-appdirs python3-asttokens 47s python3-brotli python3-cctbx python3-comm python3-contourpy python3-coverage 47s python3-cycler python3-dateutil python3-debugpy python3-decorator 47s python3-dev python3-dials python3-dials-data python3-execnet 47s python3-executing python3-fabio python3-fastjsonschema python3-flexcache 47s python3-flexparser python3-fonttools python3-fs python3-h5py 47s python3-h5py-serial python3-hdf5plugin python3-importlib-resources 47s python3-iniconfig python3-ipykernel python3-ipython python3-jedi 47s python3-joblib python3-jupyter-client python3-jupyter-core 47s python3-kiwisolver python3-lxml python3-lz4 python3-mako python3-matplotlib 47s python3-matplotlib-inline python3-minimal python3-mpmath python3-mrcfile 47s python3-natsort python3-nbformat python3-nest-asyncio python3-numexpr 47s python3-numpy python3-nxmx python3-opengl python3-ordered-set 47s python3-packaging python3-pandas python3-pandas-lib python3-parso 47s python3-pexpect python3-pil python3-pil.imagetk python3-pint 47s python3-platformdirs python3-plotly python3-pluggy python3-pooch 47s python3-procrunner python3-prompt-toolkit python3-psutil python3-ptyprocess 47s python3-pure-eval python3-py python3-pycbf python3-pyfai python3-pymol 47s python3-pyopencl python3-pyqt5 python3-pyqt5.qtchart 47s python3-pyqt5.qtmultimedia python3-pyqt5.qtopengl 47s python3-pyqt5.qtpositioning python3-pyqt5.qtquick 47s python3-pyqt5.qtremoteobjects python3-pyqt5.qtsensors 47s python3-pyqt5.qtserialport python3-pyqt5.qtsql python3-pyqt5.qtsvg 47s python3-pyqt5.qttexttospeech python3-pyqt5.qtwebchannel 47s python3-pyqt5.qtwebkit python3-pyqt5.qtwebsockets 47s python3-pyqt5.qtxmlpatterns python3-pyqt5.sip python3-pytest 47s python3-pytest-mock python3-pytest-xdist python3-pytools python3-qtconsole 47s python3-qtpy python3-scipy python3-silx python3-six python3-sklearn 47s python3-sklearn-lib python3-stack-data python3-sympy python3-tabulate 47s python3-tenacity python3-threadpoolctl python3-tk python3-tornado 47s python3-tqdm python3-traitlets python3-typeshed python3-tz python3-ufolib2 47s python3-unicodedata2 python3-wcwidth python3-wxgtk4.0 python3-zmq 47s python3.12-dev python3.12-tk python3.13 python3.13-minimal python3.13-tk 47s sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data x11-common 47s zlib1g-dev 47s Suggested packages: 47s adwaita-icon-theme-legacy blt-demo clang-18-doc wasi-libc gdb-doc gdbserver 47s libboost1.83-doc gccxml libboost-atomic1.83-dev libboost-chrono1.83-dev 47s libboost-container1.83-dev libboost-context1.83-dev 47s libboost-contract1.83-dev libboost-coroutine1.83-dev 47s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 47s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 47s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 47s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 47s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 47s libboost-numpy1.83-dev libboost-program-options1.83-dev 47s libboost-random1.83-dev libboost-regex1.83-dev 47s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 47s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 47s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 47s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 47s colord cups-common glew-utils libvisual-0.4-plugins gstreamer1.0-tools gvfs 47s libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 47s fonts-stix libjs-mathjax-doc liblcms2-utils notification-daemon opus-tools 47s pulseaudio qgnomeplatform-qt5 qt5-image-formats-plugins 47s qt5-qmltooling-plugins libstdc++-14-doc tcl8.6 tk8.6 libwacom-bin 47s python-coverage-doc python-cycler-doc execnet-doc python-fabio-doc 47s python-fastjsonschema-doc python-h5py-doc python-ipython-doc 47s python-joblib-doc python-jupyter-client-doc python3-pip python-lxml-doc 47s python-mako-doc python3-beaker cm-super-minimal dvipng ffmpeg fonts-staypuft 47s ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 47s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 47s python3-sip texlive-extra-utils texlive-latex-extra python-mpmath-doc 47s python3-gmpy2 python-natsort-doc gcc gfortran python-numpy-doc libgle3 47s python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc 47s python3-paramiko subversion python-pytest-mock-doc python-scipy-doc 47s python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc 47s python-tenacity-doc tix python3-tk-dbg python3-pycurl python-tornado-doc 47s python3-twisted python-traitlets-doc wx3.2-doc python3.13-venv 47s python3.13-doc binfmt-support 47s Recommended packages: 47s librsvg2-common llvm-18-dev libc-dbg at-spi2-core libclang-rt-18-dev 47s libgdk-pixbuf2.0-bin libgl1-amber-dri gstreamer1.0-plugins-base libgtk-3-bin 47s libhwloc-plugins javascript-common qttranslations5-l10n 47s qt5-gtk-platformtheme qtwayland5 geoclue-2.0 libqt5sql5-sqlite 47s | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds 47s | libqt5sql5-ibase qtspeech5-speechd-plugin | qtspeech5-flite-plugin 47s mesa-vulkan-drivers | vulkan-icd hdf5-filter-plugin-blosc-serial 47s hdf5-filter-plugin-bz2-serial hdf5-filter-plugin-lz4-serial 47s hdf5-filter-plugin-zfp-serial hdf5-plugin-lzf python3-simplejson python3-bs4 47s python3-cssselect python3-html5lib libglut-dev python3-bottleneck 47s python3-odf python3-openpyxl python3-tables python3-numba python3-olefile 47s python-pyopencl-doc python3-pyqt5.qtwebengine isympy-common 47s The following NEW packages will be installed: 47s adwaita-icon-theme at-spi2-common autopkgtest-satdep blt clang-18 47s dconf-gsettings-backend dconf-service dials fontconfig fontconfig-config 47s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 47s fonts-glyphicons-halflings fonts-katex fonts-lato fonts-lyx fonts-mathjax 47s gdb gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme libaec0 47s libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libasan8 libasyncns0 47s libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 47s libavahi-common-data libavahi-common3 libbabeltrace1 libblas3 47s libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev 47s libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 47s libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data 47s libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 47s libclang-common-18-dev libclang1-18 libcolord2 libcups2t64 libdatrie1 47s libdconf1 libdebuginfod-common libdebuginfod1t64 libdeflate0 47s libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libdrm-radeon1 47s libegl-mesa0 libegl1 libepoxy0 libexpat1-dev libflac12t64 libfontconfig1 47s libgbm1 libgc1 libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common 47s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa 47s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 47s libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgtk-3-0t64 47s libgtk-3-common libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 47s libhwloc15 libhyphen0 libice6 libimagequant0 libinput-bin libinput10 libipt2 47s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 47s libjs-jquery-ui libjs-katex libjs-mathjax libjs-sphinxdoc libjs-underscore 47s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1 libmd4c0 47s libmmdb2-0 libmp3lame0 libmpg123-0t64 libmtdev1t64 libnetcdf19t64 47s libnorm1t64 libnotify4 libobjc-14-dev libobjc4 libogg0 libopengl0 47s libopenjp2-7 libopus0 liborc-0.4-0t64 libpango-1.0-0 libpangocairo-1.0-0 47s libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpgm-5.3-0t64 47s libpixman-1-0 libpocl2-common libpocl2t64 libpulse0 libpython3-dev 47s libpython3.12-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 47s libqt5charts5 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 47s libqt5help5 libqt5location5 libqt5multimedia5 libqt5multimediawidgets5 47s libqt5network5t64 libqt5opengl5t64 libqt5positioning5 47s libqt5positioningquick5 libqt5printsupport5t64 libqt5qml5 libqt5qmlmodels5 47s libqt5quick5 libqt5quickwidgets5 libqt5remoteobjects5 libqt5sensors5 47s libqt5serialport5 libqt5sql5t64 libqt5svg5 libqt5test5t64 47s libqt5texttospeech5 libqt5webchannel5 libqt5webkit5 libqt5websockets5 47s libqt5widgets5t64 libqt5xml5t64 libqt5xmlpatterns5 libquadmath0 libraqm0 47s libsharpyuv0 libsm6 libsndfile1 libsodium23 libsource-highlight-common 47s libsource-highlight4t64 libssm2 libstdc++-14-dev libsz2 libtcl8.6 47s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libvorbis0a 47s libvorbisenc2 libvulkan1 libwacom-common libwacom9 libwayland-client0 47s libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 47s libwebpmux3 libwoff1 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 47s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 47s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 47s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 47s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 47s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 47s libxinerama1 libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1 47s libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzmq5 llvm-18-linker-tools 47s mesa-libgallium ocl-icd-libopencl1 pocl-opencl-icd pymol-data 47s python-matplotlib-data python3-all python3-appdirs python3-asttokens 47s python3-brotli python3-cctbx python3-comm python3-contourpy python3-coverage 47s python3-cycler python3-dateutil python3-debugpy python3-decorator 47s python3-dev python3-dials python3-dials-data python3-execnet 47s python3-executing python3-fabio python3-fastjsonschema python3-flexcache 47s python3-flexparser python3-fonttools python3-fs python3-h5py 47s python3-h5py-serial python3-hdf5plugin python3-importlib-resources 47s python3-iniconfig python3-ipykernel python3-ipython python3-jedi 47s python3-joblib python3-jupyter-client python3-jupyter-core 47s python3-kiwisolver python3-lxml python3-lz4 python3-mako python3-matplotlib 47s python3-matplotlib-inline python3-mpmath python3-mrcfile python3-natsort 47s python3-nbformat python3-nest-asyncio python3-numexpr python3-numpy 47s python3-nxmx python3-opengl python3-ordered-set python3-packaging 47s python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pil 47s python3-pil.imagetk python3-pint python3-platformdirs python3-plotly 47s python3-pluggy python3-pooch python3-procrunner python3-prompt-toolkit 47s python3-psutil python3-ptyprocess python3-pure-eval python3-py python3-pycbf 47s python3-pyfai python3-pymol python3-pyopencl python3-pyqt5 47s python3-pyqt5.qtchart python3-pyqt5.qtmultimedia python3-pyqt5.qtopengl 47s python3-pyqt5.qtpositioning python3-pyqt5.qtquick 47s python3-pyqt5.qtremoteobjects python3-pyqt5.qtsensors 47s python3-pyqt5.qtserialport python3-pyqt5.qtsql python3-pyqt5.qtsvg 47s python3-pyqt5.qttexttospeech python3-pyqt5.qtwebchannel 47s python3-pyqt5.qtwebkit python3-pyqt5.qtwebsockets 47s python3-pyqt5.qtxmlpatterns python3-pyqt5.sip python3-pytest 47s python3-pytest-mock python3-pytest-xdist python3-pytools python3-qtconsole 47s python3-qtpy python3-scipy python3-silx python3-six python3-sklearn 47s python3-sklearn-lib python3-stack-data python3-sympy python3-tabulate 47s python3-tenacity python3-threadpoolctl python3-tk python3-tornado 47s python3-tqdm python3-traitlets python3-typeshed python3-tz python3-ufolib2 47s python3-unicodedata2 python3-wcwidth python3-wxgtk4.0 python3-zmq 47s python3.12-dev python3.12-tk python3.13 python3.13-minimal python3.13-tk 47s sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data x11-common 47s zlib1g-dev 47s The following packages will be upgraded: 47s libbrotli1 libpython3-stdlib libxkbcommon0 python3 python3-minimal 47s 5 upgraded, 383 newly installed, 0 to remove and 71 not upgraded. 47s Need to get 326 MB/326 MB of archives. 47s After this operation, 1861 MB of additional disk space will be used. 47s Get:1 /tmp/autopkgtest.34gtt2/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [740 B] 47s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 47s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 47s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 47s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 47s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 47s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libgstreamer1.0-0 amd64 1.24.9-1 [1197 kB] 47s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 liborc-0.4-0t64 amd64 1:0.4.40-1 [205 kB] 47s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.24.9-1 [1025 kB] 47s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libhyphen0 amd64 2.8.8-7build3 [26.5 kB] 47s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu1 [179 kB] 47s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 47s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 47s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 47s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu1 [2036 kB] 47s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 47s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 47s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 47s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 47s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 47s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 47s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB] 47s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 47s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 47s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 47s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 47s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 47s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.3-1ubuntu1 [42.4 kB] 47s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 47s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 47s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 47s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 47s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 47s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 47s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 47s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.3-1ubuntu1 [9904 kB] 47s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.3-1ubuntu1 [32.0 kB] 47s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB] 47s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 47s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.3-1ubuntu1 [129 kB] 47s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 47s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 47s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 47s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 47s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB] 47s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.3-1ubuntu1 [34.4 kB] 47s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.3-1ubuntu1 [153 kB] 47s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 47s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 47s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 47s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 47s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 47s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 47s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [14.4 kB] 47s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.13.0-1 [98.6 kB] 47s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.13.0-1 [25.1 kB] 47s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.26.2-1 [22.8 kB] 47s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.26.2-1 [137 kB] 47s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 47s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu1 [221 kB] 47s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu1 [724 kB] 47s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 47s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 47s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.0-1build3 [10.7 kB] 47s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 47s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.0-1build4 [7956 B] 47s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 47s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.9-1build4 [9608 B] 47s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 47s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 47s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 47s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 47s Get:73 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libxkbcommon0 amd64 1.7.0-1 [131 kB] 47s Get:74 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libxkbcommon-x11-0 amd64 1.7.0-1 [15.2 kB] 47s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 47s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu1 [3791 kB] 47s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5positioning5 amd64 5.15.15+dfsg-2 [223 kB] 47s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 47s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 47s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 47s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.10-1ubuntu2 [271 kB] 47s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu1 [2561 kB] 47s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-1ubuntu1 [208 kB] 47s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5qml5 amd64 5.15.15+dfsg-3 [1618 kB] 47s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5qmlmodels5 amd64 5.15.15+dfsg-3 [226 kB] 47s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5quick5 amd64 5.15.15+dfsg-3 [1880 kB] 47s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sensors5 amd64 5.15.15-2 [128 kB] 47s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5webchannel5 amd64 5.15.15-2 [66.2 kB] 47s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 47s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 47s Get:91 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libbrotli1 amd64 1.1.0-2build3 [365 kB] 47s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libwoff1 amd64 1.0.2-2build1 [45.3 kB] 47s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 47s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-41 [14.7 MB] 47s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 47s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 47s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [7888 B] 47s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 47s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 47s Get:100 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 liblerc4 amd64 4.0.0+ds-5 [271 kB] 47s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 47s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-1 [147 kB] 47s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gtk-update-icon-cache amd64 4.16.5+ds-2 [52.5 kB] 47s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 hicolor-icon-theme all 0.18-1 [13.5 kB] 47s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 humanity-icon-theme all 0.6.16 [1282 kB] 47s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 47s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 adwaita-icon-theme all 47.0-2 [525 kB] 47s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 at-spi2-common all 2.54.0-1 [8774 B] 47s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 47s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 47s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 47s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 47s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 47s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 47s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 47s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 47s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 47s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 48s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 48s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 48s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 48s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 48s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 48s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 48s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libgc1 amd64 1:8.2.8-1 [102 kB] 48s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libobjc4 amd64 14.2.0-8ubuntu1 [47.1 kB] 48s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libobjc-14-dev amd64 14.2.0-8ubuntu1 [194 kB] 48s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libclang-common-18-dev amd64 1:18.1.8-12 [738 kB] 48s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-18-linker-tools amd64 1:18.1.8-12 [1311 kB] 48s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libclang1-18 amd64 1:18.1.8-12 [7754 kB] 48s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 clang-18 amd64 1:18.1.8-12 [80.1 kB] 48s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libdconf1 amd64 0.40.0-4build2 [39.4 kB] 48s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-service amd64 0.40.0-4build2 [27.5 kB] 48s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-gsettings-backend amd64 0.40.0-4build2 [22.1 kB] 48s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 48s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 48s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 48s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-katex all 0.16.10+~cs6.1.0-2 [775 kB] 48s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-katex all 0.16.10+~cs6.1.0-2 [220 kB] 48s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 48s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 48s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 48s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 48s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 48s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 48s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 48s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 48s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 48s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 48s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 48s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build1 [32.7 kB] 48s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build1 [45.1 kB] 48s Get:153 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost1.83-dev amd64 1.83.0-3.2ubuntu3 [10.7 MB] 48s Get:154 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-python1.83.0 amd64 1.83.0-3.2ubuntu3 [325 kB] 48s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 48s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 48s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 48s Get:158 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 48s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 48s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 48s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 48s Get:162 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 48s Get:163 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-python1.83-dev amd64 1.83.0-3.2ubuntu3 [338 kB] 48s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-python-dev amd64 1.83.0.2ubuntu1 [4516 B] 48s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4-data all 8.0.0-4 [65.2 kB] 48s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4c0t64 amd64 8.0.0-4 [104 kB] 48s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 48s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmmdb2-0 amd64 2.0.22-1 [363 kB] 48s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4f0t64 amd64 8.0.0-4 [228 kB] 48s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4-dev amd64 8.0.0-4 [42.4 kB] 48s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 48s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 48s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 48s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-4build1 [361 kB] 48s Get:175 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcctbx0 amd64 2024.10+ds2+~3.22.1+ds1-2build1 [2057 kB] 48s Get:176 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcctbx-dev amd64 2024.10+ds2+~3.22.1+ds1-2build1 [1193 kB] 48s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-4build1 [164 kB] 48s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 48s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 48s Get:180 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 48s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 48s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 48s Get:183 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu2 [1686 kB] 48s Get:184 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py all 3.11.0-5ubuntu2 [7982 B] 48s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdf5plugin all 4.0.1-3 [20.3 kB] 48s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 48s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 48s Get:188 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 48s Get:189 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 48s Get:190 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 48s Get:191 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 48s Get:192 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 48s Get:193 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 48s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 48s Get:195 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 48s Get:196 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-pil amd64 10.4.0-1ubuntu2 [580 kB] 48s Get:197 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 48s Get:198 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 48s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 48s Get:200 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu2 [9568 B] 48s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2build1 [271 kB] 48s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 48s Get:203 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 48s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 48s Get:205 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 48s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 48s Get:207 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-lxml amd64 5.3.0-1build1 [1834 kB] 48s Get:208 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build5 [27.5 kB] 48s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 48s Get:210 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-scipy amd64 1.13.1-5ubuntu1 [21.7 MB] 48s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 48s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 48s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 48s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 48s Get:215 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 48s Get:216 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 48s Get:217 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 48s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 49s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.54.1-4ubuntu1 [1757 kB] 49s Get:220 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-importlib-resources all 6.4.0-1ubuntu1 [22.8 kB] 49s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 49s Get:222 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-packaging all 24.2-1 [51.5 kB] 49s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 49s Get:224 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu1 [4691 kB] 49s Get:225 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 49s Get:226 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 49s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.3-3 [114 kB] 49s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 49s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-flexcache all 0.3-2 [13.4 kB] 49s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-flexparser all 0.4-1 [43.8 kB] 49s Get:231 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-pint all 0.24.4-1 [203 kB] 49s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nxmx all 0.0.3-3 [15.7 kB] 49s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ordered-set all 4.1.0-1 [9778 B] 49s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB] 49s Get:235 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 49s Get:236 http://ftpmaster.internal/ubuntu plucky/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 49s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 49s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.sip amd64 12.15.0-1build1 [78.3 kB] 49s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-1ubuntu1 [124 kB] 49s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5designer5 amd64 5.15.15-2 [2827 kB] 49s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-1ubuntu1 [122 kB] 49s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5help5 amd64 5.15.15-2 [161 kB] 49s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-1ubuntu1 [149 kB] 49s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-1build1 [2726 kB] 49s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-1ubuntu1 [150 kB] 49s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-1build1 [129 kB] 49s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 49s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 49s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol-data all 3.0.0+dfsg-1build1 [1394 kB] 49s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymol amd64 3.0.0+dfsg-1build1 [7705 kB] 49s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.0-1 [91.6 kB] 49s Get:252 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 49s Get:253 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libwxbase3.2-1t64 amd64 3.2.6+dfsg-2 [980 kB] 49s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk1.0-0t64 amd64 2.54.0-1 [55.1 kB] 49s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 49s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 libatspi2.0-0t64 amd64 2.54.0-1 [79.6 kB] 49s Get:257 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk-bridge2.0-0t64 amd64 2.54.0-1 [66.3 kB] 49s Get:258 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 49s Get:259 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 49s Get:260 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo-gobject2 amd64 1.18.2-2 [127 kB] 49s Get:261 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolord2 amd64 1.4.7-1build2 [149 kB] 49s Get:262 http://ftpmaster.internal/ubuntu plucky/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB] 49s Get:263 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 49s Get:264 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 49s Get:265 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 49s Get:266 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [252 kB] 49s Get:267 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [51.6 kB] 49s Get:268 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [29.1 kB] 49s Get:269 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-cursor0 amd64 1.23.0-1 [10.8 kB] 49s Get:270 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-egl1 amd64 1.23.0-1 [5662 B] 49s Get:271 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B] 49s Get:272 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcursor1 amd64 1:1.2.2-1 [20.9 kB] 49s Get:273 http://ftpmaster.internal/ubuntu plucky/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 49s Get:274 http://ftpmaster.internal/ubuntu plucky/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 49s Get:275 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 49s Get:276 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgtk-3-common all 3.24.43-4ubuntu1 [1203 kB] 49s Get:277 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libgtk-3-0t64 amd64 3.24.43-4ubuntu1 [3159 kB] 49s Get:278 http://ftpmaster.internal/ubuntu plucky/main amd64 libnotify4 amd64 0.8.3-1build2 [25.6 kB] 49s Get:279 http://ftpmaster.internal/ubuntu plucky/main amd64 libxtst6 amd64 2:1.2.3-1.1build1 [12.6 kB] 49s Get:280 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libwxgtk3.2-1t64 amd64 3.2.6+dfsg-2 [4970 kB] 49s Get:281 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.6+dfsg-2 [53.9 kB] 49s Get:282 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-wxgtk4.0 amd64 4.2.2+dfsg-1build1 [10.4 MB] 49s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build2 [44.9 kB] 49s Get:284 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-3.2ubuntu3 [242 kB] 49s Get:285 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2ubuntu3 [278 kB] 49s Get:286 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libboost-timer1.83.0 amd64 1.83.0-3.2ubuntu3 [241 kB] 49s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssm2 amd64 1.4.0-2build1 [87.7 kB] 49s Get:288 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-cctbx amd64 2024.10+ds2+~3.22.1+ds1-2build1 [32.2 MB] 49s Get:289 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5ubuntu1 [8271 kB] 50s Get:290 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB] 50s Get:291 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-psutil amd64 5.9.8-2build3 [196 kB] 50s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fabio amd64 2024.4.0-2build1 [925 kB] 50s Get:293 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-numexpr amd64 2.10.1-2build1 [132 kB] 50s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-mako all 1.3.6-1 [63.5 kB] 50s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 50s Get:296 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpocl2-common all 6.0-3 [82.8 kB] 50s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 50s Get:298 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libpocl2t64 amd64 6.0-3 [9731 kB] 50s Get:299 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 pocl-opencl-icd amd64 6.0-3 [7162 B] 50s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytools all 2024.1.14-1 [68.4 kB] 50s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyopencl amd64 2024.1-1build1 [777 kB] 50s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5svg5 amd64 5.15.15-2 [153 kB] 50s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsvg amd64 5.15.11+dfsg-1build1 [30.0 kB] 50s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-comm all 0.2.1-1 [7016 B] 50s Get:305 http://ftpmaster.internal/ubuntu plucky/main amd64 libbabeltrace1 amd64 1.5.11-4build1 [185 kB] 50s Get:306 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 50s Get:307 http://ftpmaster.internal/ubuntu plucky/main amd64 libipt2 amd64 2.1.1-1 [58.9 kB] 50s Get:308 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight-common all 3.1.9-4.3build1 [64.2 kB] 50s Get:309 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight4t64 amd64 3.1.9-4.3build1 [258 kB] 50s Get:310 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 gdb amd64 15.2-1ubuntu1 [4880 kB] 50s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu3 [150 kB] 50s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-debugpy amd64 1.8.8+ds-1ubuntu2 [1145 kB] 50s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-parso all 0.8.3-1 [67.2 kB] 50s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 50s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB] 50s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 50s Get:317 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 50s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-prompt-toolkit all 3.0.48-1 [256 kB] 50s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-asttokens all 2.4.1-2 [20.8 kB] 50s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-executing all 2.1.0-0.1 [24.4 kB] 50s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pure-eval all 0.2.3-1 [11.4 kB] 50s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB] 50s Get:323 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ptyprocess all 0.7.0-6 [14.8 kB] 50s Get:324 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-pexpect all 4.9-3 [48.1 kB] 50s Get:325 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-ipython all 8.29.0-1 [569 kB] 50s Get:326 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tornado amd64 6.4.1-3 [299 kB] 50s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-py all 1.11.0-2 [72.7 kB] 50s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 50s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 50s Get:330 http://ftpmaster.internal/ubuntu plucky/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 50s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 50s Get:332 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-zmq amd64 24.0.1-5build2 [406 kB] 50s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-client all 8.6.2-3 [78.1 kB] 50s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nest-asyncio all 1.5.4-1 [6256 B] 50s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipykernel all 6.29.5-1 [82.5 kB] 50s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5charts5 amd64 5.15.15-2 [519 kB] 50s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtchart amd64 5.15.7+dfsg-1 [147 kB] 50s Get:338 http://ftpmaster.internal/ubuntu plucky/main amd64 libasyncns0 amd64 0.8-6build4 [11.3 kB] 50s Get:339 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 50s Get:340 http://ftpmaster.internal/ubuntu plucky/main amd64 libflac12t64 amd64 1.4.3+ds-2.1ubuntu2 [197 kB] 50s Get:341 http://ftpmaster.internal/ubuntu plucky/main amd64 libmp3lame0 amd64 3.100-6build1 [142 kB] 50s Get:342 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpg123-0t64 amd64 1.32.9-1 [191 kB] 50s Get:343 http://ftpmaster.internal/ubuntu plucky/main amd64 libopus0 amd64 1.5.2-2 [2913 kB] 50s Get:344 http://ftpmaster.internal/ubuntu plucky/main amd64 libvorbis0a amd64 1.3.7-2 [98.4 kB] 50s Get:345 http://ftpmaster.internal/ubuntu plucky/main amd64 libvorbisenc2 amd64 1.3.7-2 [80.8 kB] 50s Get:346 http://ftpmaster.internal/ubuntu plucky/main amd64 libsndfile1 amd64 1.2.2-1ubuntu5 [208 kB] 50s Get:347 http://ftpmaster.internal/ubuntu plucky/main amd64 libpulse0 amd64 1:16.1+dfsg1-5.1ubuntu1 [292 kB] 50s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5multimedia5 amd64 5.15.15-2 [308 kB] 50s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5multimediawidgets5 amd64 5.15.15-2 [42.2 kB] 50s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtmultimedia amd64 5.15.11+dfsg-1build1 [229 kB] 50s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5positioningquick5 amd64 5.15.15+dfsg-2 [43.4 kB] 50s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5location5 amd64 5.15.15+dfsg-2 [750 kB] 50s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtpositioning amd64 5.15.11+dfsg-1build1 [153 kB] 50s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5quickwidgets5 amd64 5.15.15+dfsg-3 [39.1 kB] 50s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtquick amd64 5.15.11+dfsg-1build1 [394 kB] 50s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5remoteobjects5 amd64 5.15.15-2 [210 kB] 50s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtremoteobjects amd64 5.15.11+dfsg-1build1 [32.6 kB] 50s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsensors amd64 5.15.11+dfsg-1build1 [56.0 kB] 50s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5serialport5 amd64 5.15.15-2 [37.6 kB] 50s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtserialport amd64 5.15.11+dfsg-1build1 [28.4 kB] 50s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsql amd64 5.15.11+dfsg-1build1 [89.9 kB] 50s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5texttospeech5 amd64 5.15.15-2 [22.1 kB] 50s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qttexttospeech amd64 5.15.11+dfsg-1build1 [17.9 kB] 50s Get:364 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebchannel amd64 5.15.11+dfsg-1build1 [15.2 kB] 50s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebkit amd64 5.15.11+dfsg-1build1 [111 kB] 50s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5websockets5 amd64 5.15.15-2 [62.1 kB] 50s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebsockets amd64 5.15.11+dfsg-1build1 [27.2 kB] 50s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xmlpatterns5 amd64 5.15.15-2 [934 kB] 50s Get:369 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtxmlpatterns amd64 5.15.11+dfsg-1build1 [44.7 kB] 50s Get:370 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-qtpy all 2.4.1-2 [51.4 kB] 50s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-qtconsole all 5.5.2-1 [83.2 kB] 50s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pooch all 1.8.2-1 [49.9 kB] 50s Get:373 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-silx amd64 2.1.2+dfsg-1 [2568 kB] 50s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyfai amd64 2024.05-3build1 [4901 kB] 50s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 50s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 50s Get:377 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6build1 [6868 kB] 50s Get:378 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 50s Get:379 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 50s Get:380 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-dials amd64 3.22.1+dfsg3-1 [4240 kB] 50s Get:381 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 dials amd64 3.22.1+dfsg3-1 [7966 B] 50s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 50s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 50s Get:384 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 50s Get:385 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dials-data all 2.4.0-2 [110 kB] 50s Get:386 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-execnet all 2.1.1-1 [33.4 kB] 50s Get:387 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-mock all 3.14.0-2 [11.7 kB] 50s Get:388 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] 51s Preconfiguring packages ... 51s Fetched 326 MB in 3s (100 MB/s) 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75588 files and directories currently installed.) 51s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 51s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 51s Setting up python3-minimal (3.12.7-1) ... 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75588 files and directories currently installed.) 51s Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... 51s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 51s Preparing to unpack .../001-libpython3-stdlib_3.12.7-1_amd64.deb ... 51s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 51s Selecting previously unselected package fonts-lato. 51s Preparing to unpack .../002-fonts-lato_2.015-1_all.deb ... 51s Unpacking fonts-lato (2.015-1) ... 52s Selecting previously unselected package libdebuginfod-common. 52s Preparing to unpack .../003-libdebuginfod-common_0.192-4_all.deb ... 52s Unpacking libdebuginfod-common (0.192-4) ... 52s Selecting previously unselected package libgstreamer1.0-0:amd64. 52s Preparing to unpack .../004-libgstreamer1.0-0_1.24.9-1_amd64.deb ... 52s Unpacking libgstreamer1.0-0:amd64 (1.24.9-1) ... 52s Selecting previously unselected package liborc-0.4-0t64:amd64. 52s Preparing to unpack .../005-liborc-0.4-0t64_1%3a0.4.40-1_amd64.deb ... 52s Unpacking liborc-0.4-0t64:amd64 (1:0.4.40-1) ... 52s Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. 52s Preparing to unpack .../006-libgstreamer-plugins-base1.0-0_1.24.9-1_amd64.deb ... 52s Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.24.9-1) ... 52s Selecting previously unselected package libhyphen0:amd64. 52s Preparing to unpack .../007-libhyphen0_2.8.8-7build3_amd64.deb ... 52s Unpacking libhyphen0:amd64 (2.8.8-7build3) ... 52s Selecting previously unselected package libjpeg-turbo8:amd64. 52s Preparing to unpack .../008-libjpeg-turbo8_2.1.5-3ubuntu1_amd64.deb ... 52s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu1) ... 52s Selecting previously unselected package libjpeg8:amd64. 52s Preparing to unpack .../009-libjpeg8_8c-2ubuntu11_amd64.deb ... 52s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 52s Selecting previously unselected package libdouble-conversion3:amd64. 52s Preparing to unpack .../010-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 52s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 52s Selecting previously unselected package libpcre2-16-0:amd64. 52s Preparing to unpack .../011-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 52s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 52s Selecting previously unselected package libqt5core5t64:amd64. 52s Preparing to unpack .../012-libqt5core5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 52s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 52s Selecting previously unselected package fonts-dejavu-mono. 52s Preparing to unpack .../013-fonts-dejavu-mono_2.37-8_all.deb ... 52s Unpacking fonts-dejavu-mono (2.37-8) ... 52s Selecting previously unselected package fonts-dejavu-core. 52s Preparing to unpack .../014-fonts-dejavu-core_2.37-8_all.deb ... 52s Unpacking fonts-dejavu-core (2.37-8) ... 52s Selecting previously unselected package fontconfig-config. 52s Preparing to unpack .../015-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 52s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 52s Selecting previously unselected package libfontconfig1:amd64. 52s Preparing to unpack .../016-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 52s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 52s Selecting previously unselected package fontconfig. 52s Preparing to unpack .../017-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 52s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 52s Selecting previously unselected package libglvnd0:amd64. 52s Preparing to unpack .../018-libglvnd0_1.7.0-1build1_amd64.deb ... 52s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 52s Selecting previously unselected package libwayland-server0:amd64. 52s Preparing to unpack .../019-libwayland-server0_1.23.0-1_amd64.deb ... 52s Unpacking libwayland-server0:amd64 (1.23.0-1) ... 52s Selecting previously unselected package libxcb-randr0:amd64. 52s Preparing to unpack .../020-libxcb-randr0_1.17.0-2_amd64.deb ... 52s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 52s Selecting previously unselected package libdrm-amdgpu1:amd64. 52s Preparing to unpack .../021-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 52s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 52s Selecting previously unselected package libpciaccess0:amd64. 52s Preparing to unpack .../022-libpciaccess0_0.17-3build1_amd64.deb ... 52s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 52s Selecting previously unselected package libdrm-intel1:amd64. 52s Preparing to unpack .../023-libdrm-intel1_2.4.123-1_amd64.deb ... 52s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 53s Selecting previously unselected package libdrm-radeon1:amd64. 53s Preparing to unpack .../024-libdrm-radeon1_2.4.123-1_amd64.deb ... 53s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 53s Selecting previously unselected package libglapi-mesa:amd64. 53s Preparing to unpack .../025-libglapi-mesa_24.2.3-1ubuntu1_amd64.deb ... 53s Unpacking libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 53s Selecting previously unselected package libx11-xcb1:amd64. 53s Preparing to unpack .../026-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 53s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 53s Selecting previously unselected package libxcb-dri2-0:amd64. 53s Preparing to unpack .../027-libxcb-dri2-0_1.17.0-2_amd64.deb ... 53s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ... 53s Selecting previously unselected package libxcb-dri3-0:amd64. 53s Preparing to unpack .../028-libxcb-dri3-0_1.17.0-2_amd64.deb ... 53s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 53s Selecting previously unselected package libxcb-present0:amd64. 53s Preparing to unpack .../029-libxcb-present0_1.17.0-2_amd64.deb ... 53s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 53s Selecting previously unselected package libxcb-sync1:amd64. 53s Preparing to unpack .../030-libxcb-sync1_1.17.0-2_amd64.deb ... 53s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 53s Selecting previously unselected package libxcb-xfixes0:amd64. 53s Preparing to unpack .../031-libxcb-xfixes0_1.17.0-2_amd64.deb ... 53s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 53s Selecting previously unselected package libxshmfence1:amd64. 53s Preparing to unpack .../032-libxshmfence1_1.3-1build5_amd64.deb ... 53s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 53s Selecting previously unselected package mesa-libgallium:amd64. 53s Preparing to unpack .../033-mesa-libgallium_24.2.3-1ubuntu1_amd64.deb ... 53s Unpacking mesa-libgallium:amd64 (24.2.3-1ubuntu1) ... 53s 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package libice6:amd64. 53s Preparing to unpack .../050-libice6_2%3a1.1.1-1_amd64.deb ... 53s Unpacking libice6:amd64 (2:1.1.1-1) ... 53s Selecting previously unselected package libmtdev1t64:amd64. 53s Preparing to unpack .../051-libmtdev1t64_1.1.6-1.2_amd64.deb ... 53s Unpacking libmtdev1t64:amd64 (1.1.6-1.2) ... 53s Selecting previously unselected package libwacom-common. 53s Preparing to unpack .../052-libwacom-common_2.13.0-1_all.deb ... 53s Unpacking libwacom-common (2.13.0-1) ... 54s Selecting previously unselected package libwacom9:amd64. 54s Preparing to unpack .../053-libwacom9_2.13.0-1_amd64.deb ... 54s Unpacking libwacom9:amd64 (2.13.0-1) ... 54s Selecting previously unselected package libinput-bin. 54s Preparing to unpack .../054-libinput-bin_1.26.2-1_amd64.deb ... 54s Unpacking libinput-bin (1.26.2-1) ... 54s Selecting previously unselected package libinput10:amd64. 54s Preparing to unpack .../055-libinput10_1.26.2-1_amd64.deb ... 54s Unpacking libinput10:amd64 (1.26.2-1) 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previously unselected package libpython3.13-minimal:amd64. 55s Preparing to unpack .../092-libpython3.13-minimal_3.13.0-2_amd64.deb ... 55s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 55s Selecting previously unselected package python3.13-minimal. 55s Preparing to unpack .../093-python3.13-minimal_3.13.0-2_amd64.deb ... 55s Unpacking python3.13-minimal (3.13.0-2) ... 55s Selecting previously unselected package libgdk-pixbuf2.0-common. 55s Preparing to unpack .../094-libgdk-pixbuf2.0-common_2.42.12+dfsg-1_all.deb ... 55s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 55s Selecting previously unselected package libdeflate0:amd64. 55s Preparing to unpack .../095-libdeflate0_1.22-1_amd64.deb ... 55s Unpacking libdeflate0:amd64 (1.22-1) ... 55s Selecting previously unselected package libjbig0:amd64. 55s Preparing to unpack .../096-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 55s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 55s Selecting previously unselected package liblerc4:amd64. 55s Preparing to unpack .../097-liblerc4_4.0.0+ds-5_amd64.deb ... 55s Unpacking liblerc4:amd64 (4.0.0+ds-5) ... 55s Selecting previously unselected package libtiff6:amd64. 55s Preparing to unpack .../098-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 55s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 55s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 55s Preparing to unpack .../099-libgdk-pixbuf-2.0-0_2.42.12+dfsg-1_amd64.deb ... 55s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... 55s Selecting previously unselected package gtk-update-icon-cache. 56s Preparing to unpack .../100-gtk-update-icon-cache_4.16.5+ds-2_amd64.deb ... 56s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 56s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 56s Unpacking gtk-update-icon-cache (4.16.5+ds-2) ... 56s Selecting previously unselected package hicolor-icon-theme. 56s Preparing to unpack .../101-hicolor-icon-theme_0.18-1_all.deb ... 56s Unpacking hicolor-icon-theme (0.18-1) ... 56s Selecting previously unselected package humanity-icon-theme. 56s Preparing to unpack .../102-humanity-icon-theme_0.6.16_all.deb ... 56s Unpacking humanity-icon-theme (0.6.16) ... 57s Selecting previously unselected package ubuntu-mono. 57s Preparing to unpack .../103-ubuntu-mono_24.04-0ubuntu1_all.deb ... 57s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 57s Selecting previously unselected package adwaita-icon-theme. 57s Preparing to unpack .../104-adwaita-icon-theme_47.0-2_all.deb ... 57s Unpacking adwaita-icon-theme (47.0-2) ... 57s Selecting previously unselected package at-spi2-common. 57s Preparing to unpack .../105-at-spi2-common_2.54.0-1_all.deb ... 57s Unpacking at-spi2-common (2.54.0-1) ... 57s Selecting previously unselected package libtcl8.6:amd64. 57s 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Selecting previously unselected package libgomp1:amd64. 57s Preparing to unpack .../112-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 57s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 57s Selecting previously unselected package libitm1:amd64. 57s Preparing to unpack .../113-libitm1_14.2.0-8ubuntu1_amd64.deb ... 57s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 57s Selecting previously unselected package libasan8:amd64. 57s Preparing to unpack .../114-libasan8_14.2.0-8ubuntu1_amd64.deb ... 57s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 58s Selecting previously unselected package liblsan0:amd64. 58s Preparing to unpack .../115-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 58s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 58s Selecting previously unselected package libtsan2:amd64. 58s Preparing to unpack .../116-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 58s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 58s Selecting previously unselected package libubsan1:amd64. 58s Preparing to unpack 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python3-traitlets. 60s Preparing to unpack .../143-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 60s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 60s Selecting previously unselected package python3-jupyter-core. 60s Preparing to unpack .../144-python3-jupyter-core_5.7.2-4_all.deb ... 60s Unpacking python3-jupyter-core (5.7.2-4) ... 60s Selecting previously unselected package python3-nbformat. 60s Preparing to unpack .../145-python3-nbformat_5.9.1-1_all.deb ... 60s Unpacking python3-nbformat (5.9.1-1) ... 60s Selecting previously unselected package python3-tenacity. 60s Preparing to unpack .../146-python3-tenacity_8.5.0-0ubuntu1_all.deb ... 60s Unpacking python3-tenacity (8.5.0-0ubuntu1) ... 60s Selecting previously unselected package python3-plotly. 60s Preparing to unpack .../147-python3-plotly_5.20.0+dfsg-1_all.deb ... 60s Unpacking python3-plotly (5.20.0+dfsg-1) ... 62s Selecting previously unselected package libann-cctbx0. 62s Preparing to unpack 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.../179-liblzf1_3.6-4_amd64.deb ... 66s Unpacking liblzf1:amd64 (3.6-4) ... 66s Selecting previously unselected package python3-h5py-serial. 66s Preparing to unpack .../180-python3-h5py-serial_3.11.0-5ubuntu2_amd64.deb ... 66s Unpacking python3-h5py-serial (3.11.0-5ubuntu2) ... 66s Selecting previously unselected package python3-h5py. 66s Preparing to unpack .../181-python3-h5py_3.11.0-5ubuntu2_all.deb ... 66s Unpacking python3-h5py (3.11.0-5ubuntu2) ... 66s Selecting previously unselected package python3-hdf5plugin. 66s Preparing to unpack .../182-python3-hdf5plugin_4.0.1-3_all.deb ... 66s Unpacking python3-hdf5plugin (4.0.1-3) ... 66s Selecting previously unselected package libjs-jquery-ui. 66s Preparing to unpack .../183-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 66s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 66s Selecting previously unselected package fonts-lyx. 66s Preparing to unpack .../184-fonts-lyx_2.4.2.1-1_all.deb ... 66s Unpacking fonts-lyx (2.4.2.1-1) ... 66s Selecting previously unselected package python-matplotlib-data. 66s Preparing to unpack .../185-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ... 66s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ... 66s Selecting previously unselected package python3-dateutil. 66s Preparing to unpack .../186-python3-dateutil_2.9.0-3_all.deb ... 66s Unpacking python3-dateutil (2.9.0-3) ... 66s Selecting previously unselected package libimagequant0:amd64. 66s Preparing to unpack .../187-libimagequant0_2.18.0-1build1_amd64.deb ... 66s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 66s Selecting previously unselected package liblcms2-2:amd64. 66s Preparing to unpack .../188-liblcms2-2_2.16-2_amd64.deb ... 66s Unpacking liblcms2-2:amd64 (2.16-2) ... 66s Selecting previously unselected package libopenjp2-7:amd64. 66s Preparing to unpack .../189-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 66s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 66s Selecting previously unselected package libraqm0:amd64. 66s 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python3-six. 67s Preparing to unpack .../201-python3-six_1.16.0-7_all.deb ... 67s Unpacking python3-six (1.16.0-7) ... 67s Selecting previously unselected package python3-appdirs. 67s Preparing to unpack .../202-python3-appdirs_1.4.4-4_all.deb ... 67s Unpacking python3-appdirs (1.4.4-4) ... 67s Selecting previously unselected package python3-fs. 67s Preparing to unpack .../203-python3-fs_2.4.16-4_all.deb ... 67s Unpacking python3-fs (2.4.16-4) ... 67s Selecting previously unselected package python3-lxml:amd64. 67s Preparing to unpack .../204-python3-lxml_5.3.0-1build1_amd64.deb ... 67s Unpacking python3-lxml:amd64 (5.3.0-1build1) ... 67s Selecting previously unselected package python3-lz4. 67s Preparing to unpack .../205-python3-lz4_4.0.2+dfsg-1build5_amd64.deb ... 67s Unpacking python3-lz4 (4.0.2+dfsg-1build5) ... 67s Selecting previously unselected package liblbfgsb0:amd64. 67s Preparing to unpack .../206-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 67s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 67s Selecting previously unselected package python3-scipy. 67s Preparing to unpack .../207-python3-scipy_1.13.1-5ubuntu1_amd64.deb ... 67s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 68s Selecting previously unselected package python3-mpmath. 68s Preparing to unpack .../208-python3-mpmath_1.3.0-1_all.deb ... 68s Unpacking python3-mpmath (1.3.0-1) ... 68s Selecting previously unselected package python3-sympy. 68s Preparing to unpack .../209-python3-sympy_1.13.3-1_all.deb ... 68s Unpacking python3-sympy (1.13.3-1) ... 68s Selecting previously unselected package python3-ufolib2. 68s Preparing to unpack .../210-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 68s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 68s Selecting previously unselected package python3-unicodedata2. 68s Preparing to unpack .../211-python3-unicodedata2_15.1.0+ds-1build2_amd64.deb ... 68s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 68s Selecting previously unselected package 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previously unselected package libepoxy0:amd64. 71s Preparing to unpack .../259-libepoxy0_1.5.10-2_amd64.deb ... 71s Unpacking libepoxy0:amd64 (1.5.10-2) ... 72s Selecting previously unselected package libthai-data. 72s Preparing to unpack .../260-libthai-data_0.1.29-2build1_all.deb ... 72s Unpacking libthai-data (0.1.29-2build1) ... 72s Selecting previously unselected package libdatrie1:amd64. 72s Preparing to unpack .../261-libdatrie1_0.2.13-3build1_amd64.deb ... 72s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 72s Selecting previously unselected package libthai0:amd64. 72s Preparing to unpack .../262-libthai0_0.1.29-2build1_amd64.deb ... 72s Unpacking libthai0:amd64 (0.1.29-2build1) ... 72s Selecting previously unselected package libpango-1.0-0:amd64. 72s Preparing to unpack .../263-libpango-1.0-0_1.54.0+ds-3_amd64.deb ... 72s Unpacking libpango-1.0-0:amd64 (1.54.0+ds-3) ... 72s Selecting previously unselected package libpangoft2-1.0-0:amd64. 72s Preparing to unpack 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unpack .../300-python3-pyqt5.qtsvg_5.15.11+dfsg-1build1_amd64.deb ... 76s Unpacking python3-pyqt5.qtsvg (5.15.11+dfsg-1build1) ... 76s Selecting previously unselected package python3-comm. 76s Preparing to unpack .../301-python3-comm_0.2.1-1_all.deb ... 76s Unpacking python3-comm (0.2.1-1) ... 76s Selecting previously unselected package libbabeltrace1:amd64. 76s Preparing to unpack .../302-libbabeltrace1_1.5.11-4build1_amd64.deb ... 76s Unpacking libbabeltrace1:amd64 (1.5.11-4build1) ... 76s Selecting previously unselected package libdebuginfod1t64:amd64. 76s Preparing to unpack .../303-libdebuginfod1t64_0.192-4_amd64.deb ... 76s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 76s Selecting previously unselected package libipt2. 76s Preparing to unpack .../304-libipt2_2.1.1-1_amd64.deb ... 76s Unpacking libipt2 (2.1.1-1) ... 76s Selecting previously unselected package libsource-highlight-common. 76s Preparing to unpack .../305-libsource-highlight-common_3.1.9-4.3build1_all.deb ... 76s 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unselected package python3-asttokens. 78s Preparing to unpack .../316-python3-asttokens_2.4.1-2_all.deb ... 78s Unpacking python3-asttokens (2.4.1-2) ... 78s Selecting previously unselected package python3-executing. 78s Preparing to unpack .../317-python3-executing_2.1.0-0.1_all.deb ... 78s Unpacking python3-executing (2.1.0-0.1) ... 78s Selecting previously unselected package python3-pure-eval. 78s Preparing to unpack .../318-python3-pure-eval_0.2.3-1_all.deb ... 78s Unpacking python3-pure-eval (0.2.3-1) ... 78s Selecting previously unselected package python3-stack-data. 78s Preparing to unpack .../319-python3-stack-data_0.6.3-1_all.deb ... 78s Unpacking python3-stack-data (0.6.3-1) ... 78s Selecting previously unselected package python3-ptyprocess. 78s Preparing to unpack .../320-python3-ptyprocess_0.7.0-6_all.deb ... 78s Unpacking python3-ptyprocess (0.7.0-6) ... 78s Selecting previously unselected package python3-pexpect. 78s Preparing to unpack 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libnotify4:amd64 (0.8.3-1build2) ... 133s Setting up python3-zmq (24.0.1-5build2) ... 133s Setting up python3-dev (3.12.7-1) ... 133s Setting up libboost-python1.83-dev (1.83.0-3.2ubuntu3) ... 133s Setting up python3-pycbf (0.9.7+dfsg1-4build1) ... 133s Setting up python3-h5py (3.11.0-5ubuntu2) ... 133s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 137s Setting up python3-numexpr (2.10.1-2build1) ... 137s Setting up python3-plotly (5.20.0+dfsg-1) ... 148s Setting up python3-pytools (2024.1.14-1) ... 149s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 149s Setting up python3-hdf5plugin (4.0.1-3) ... 149s Setting up python3-pytest-mock (3.14.0-2) ... 149s Setting up python3-jupyter-client (8.6.2-3) ... 149s Setting up libcairo-gobject2:amd64 (1.18.2-2) ... 149s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... 149s Setting up python3-dials-data (2.4.0-2) ... 149s Setting up python3-nxmx (0.0.3-3) ... 150s Setting up python3-stack-data (0.6.3-1) ... 150s Setting up libcups2t64:amd64 (2.4.10-1ubuntu2) ... 150s Setting up libgtk-3-common (3.24.43-4ubuntu1) ... 150s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... 150s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-2build1) ... 150s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 150s Setting up python3-pytest-xdist (3.6.1-1) ... 150s Setting up python3-jedi (0.19.1+ds1-1) ... 150s Setting up blt (2.5.3+dfsg-7build1) ... 150s Setting up python3-tk:amd64 (3.12.7-1) ... 151s Setting up clang-18 (1:18.1.8-12) ... 151s Setting up python3-opengl (3.1.7+dfsg-1) ... 151s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 151s '''OpenGL extension AMD.vertex_shader_tessellator 152s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 152s '''OpenGL extension AMD.vertex_shader_tessellator 154s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 154s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 154s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu2) ... 154s Setting up python3-ipython (8.29.0-1) ... 155s Setting up python3-ipykernel (6.29.5-1) ... 155s Setting up libqt5quick5:amd64 (5.15.15+dfsg-3) ... 155s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-2build1) ... 155s Setting up libqt5positioningquick5:amd64 (5.15.15+dfsg-2) ... 155s Setting up libqt5location5:amd64 (5.15.15+dfsg-2) ... 155s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 155s Setting up libpocl2t64:amd64 (6.0-3) ... 155s Setting up libqt5svg5:amd64 (5.15.15-2) ... 155s Setting up libqt5help5:amd64 (5.15.15-2) ... 155s Setting up libqt5charts5:amd64 (5.15.15-2) ... 155s Setting up libqt5multimedia5:amd64 (5.15.15-2) ... 155s Setting up libqt5quickwidgets5:amd64 (5.15.15+dfsg-3) ... 155s Setting up pocl-opencl-icd:amd64 (6.0-3) ... 155s Setting up libqt5multimediawidgets5:amd64 (5.15.15-2) ... 155s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 155s Setting up python3-pyopencl (2024.1-1build1) ... 155s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 155s Setting up libqt5designer5:amd64 (5.15.15-2) ... 155s Setting up libqt5webkit5:amd64 (5.212.0~alpha4-41) ... 155s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtpositioning (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtsvg (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qttexttospeech (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtsql (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtmultimedia (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtchart (5.15.7+dfsg-1) ... 156s Setting up python3-pyqt5.qtxmlpatterns (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtsensors (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtwebsockets (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtserialport (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtremoteobjects (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtwebchannel (5.15.11+dfsg-1build1) ... 156s Setting up python3-pyqt5.qtwebkit (5.15.11+dfsg-1build1) ... 156s Setting up python3-pymol (3.0.0+dfsg-1build1) ... 157s Setting up python3-pyqt5.qtquick (5.15.11+dfsg-1build1) ... 157s Setting up python3-qtpy (2.4.1-2) ... 157s Setting up python3-qtconsole (5.5.2-1) ... 157s Setting up adwaita-icon-theme (47.0-2) ... 157s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 157s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 158s Setting up python3-fonttools (4.54.1-4ubuntu1) ... 159s Setting up humanity-icon-theme (0.6.16) ... 160s Setting up python3-matplotlib (3.8.3-3ubuntu1) ... 162s Setting up ubuntu-mono (24.04-0ubuntu1) ... 162s Setting up python3-fabio (2024.4.0-2build1) ... 163s Setting up python3-silx (2.1.2+dfsg-1) ... 165s Setting up python3-pyfai (2024.05-3build1) ... 166s /usr/lib/python3/dist-packages/pyFAI/method_registry.py:385: SyntaxWarning: invalid escape sequence '\ ' 166s """Constructor of the class, registering the methods. 166s /usr/lib/python3/dist-packages/pyFAI/opencl/preproc.py:514: SyntaxWarning: invalid escape sequence '\*' 166s """Common preprocessing step, implemented using OpenCL. May be inefficient 167s /usr/lib/python3/dist-packages/pyFAI/method_registry.py:385: SyntaxWarning: invalid escape sequence '\ ' 167s """Constructor of the class, registering the methods. 167s /usr/lib/python3/dist-packages/pyFAI/opencl/preproc.py:514: SyntaxWarning: invalid escape sequence '\*' 167s """Common preprocessing step, implemented using OpenCL. May be inefficient 167s Processing triggers for libc-bin (2.40-1ubuntu3) ... 167s Processing triggers for systemd (256.5-2ubuntu4) ... 167s Processing triggers for man-db (2.13.0-1) ... 168s Processing triggers for libglib2.0-0t64:amd64 (2.82.1-0ubuntu1) ... 168s Setting up libgtk-3-0t64:amd64 (3.24.43-4ubuntu1) ... 168s Processing triggers for udev (256.5-2ubuntu4) ... 168s Setting up libwxgtk3.2-1t64:amd64 (3.2.6+dfsg-2) ... 168s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.6+dfsg-2) ... 168s Setting up python3-wxgtk4.0 (4.2.2+dfsg-1build1) ... 171s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-2build1) ... 174s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 174s """ Iterator to generate strings of length n_chars, using upper-case, 174s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 174s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 184s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 184s width=pairwise_differences_db, label='$\omega_{hkl}$' 184s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 184s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 184s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 184s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 184s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 184s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 184s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 184s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 184s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 184s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 187s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 187s """ Iterator to generate strings of length n_chars, using upper-case, 187s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 187s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 197s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 197s width=pairwise_differences_db, label='$\omega_{hkl}$' 197s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 197s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 197s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 197s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 197s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 197s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 197s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 197s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 197s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 197s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 197s Setting up python3-dials (3.22.1+dfsg3-1) ... 199s Setting up dials (3.22.1+dfsg3-1) ... 199s Setting up autopkgtest-satdep (0) ... 199s Processing triggers for libc-bin (2.40-1ubuntu3) ... 210s (Reading database ... 163292 files and directories currently installed.) 210s Removing autopkgtest-satdep (0) ... 211s autopkgtest [03:44:42]: test command1: set -efu ; for py in $(py3versions -r 2>/dev/null) ; do cp -r tests conftest.py "$AUTOPKGTEST_TMP" || true ; cd "$AUTOPKGTEST_TMP" ; echo "Testing dials with $py:" ; DIALS_DATA="$AUTOPKGTEST_TMP" $py -m pytest --verbosity=2 ; done 211s autopkgtest [03:44:42]: test command1: [----------------------- 211s Testing dials with python3.13: 212s ============================= test session starts ============================== 212s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 212s cachedir: .pytest_cache 212s rootdir: /tmp/autopkgtest.34gtt2/autopkgtest_tmp 212s plugins: mock-3.14.0, xdist-3.6.1, dials-data-2.4.0, typeguard-4.4.1 223s collecting ... collected 1269 items / 11 errors 223s 223s ==================================== ERRORS ==================================== 223s _ ERROR collecting tests/algorithms/indexing/lattice_search/test_lattice_search.py _ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/algorithms/indexing/lattice_search/test_lattice_search.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/algorithms/indexing/lattice_search/test_lattice_search.py:10: in 223s from dials.algorithms.indexing import lattice_search, stills_indexer 223s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/__init__.py:19: in 223s from .pinkindexer import PinkIndexer 223s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/pinkindexer.py:5: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s _______ ERROR collecting tests/algorithms/merging/test_french_wilson.py ________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/algorithms/merging/test_french_wilson.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/algorithms/merging/test_french_wilson.py:8: in 223s from dials.algorithms.merging import french_wilson, merge 223s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 223s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 223s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s ___________ ERROR collecting tests/algorithms/merging/test_merge.py ____________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/algorithms/merging/test_merge.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/algorithms/merging/test_merge.py:8: in 223s from dials.algorithms.merging.merge import ( 223s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 223s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 223s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s ___________ ERROR collecting tests/algorithms/scaling/test_scale.py ____________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/algorithms/scaling/test_scale.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/algorithms/scaling/test_scale.py:22: in 223s from dials.algorithms.scaling.algorithm import ScalingAlgorithm, prepare_input 223s /usr/lib/python3/dist-packages/dials/algorithms/scaling/algorithm.py:37: in 223s from dials.command_line.cosym import cosym 223s /usr/lib/python3/dist-packages/dials/command_line/cosym.py:20: in 223s from dials.command_line.symmetry import ( 223s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 223s from dials.algorithms.merging.merge import prepare_merged_reflection_table 223s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 223s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 223s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s ______________ ERROR collecting tests/command_line/test_cosym.py _______________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/command_line/test_cosym.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/command_line/test_cosym.py:11: in 223s import dials.command_line.cosym as dials_cosym 223s /usr/lib/python3/dist-packages/dials/command_line/cosym.py:20: in 223s from dials.command_line.symmetry import ( 223s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 223s from dials.algorithms.merging.merge import prepare_merged_reflection_table 223s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 223s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 223s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s _________ ERROR collecting tests/command_line/test_damage_analysis.py __________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/command_line/test_damage_analysis.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/command_line/test_damage_analysis.py:12: in 223s from dials.command_line.damage_analysis import PychefRunner, phil_scope, run 223s /usr/lib/python3/dist-packages/dials/command_line/damage_analysis.py:48: in 223s from dials.command_line.symmetry import median_unit_cell 223s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 223s from dials.algorithms.merging.merge import prepare_merged_reflection_table 223s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 223s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 223s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s ______________ ERROR collecting tests/command_line/test_export.py ______________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/command_line/test_export.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/command_line/test_export.py:8: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s _________ ERROR collecting tests/command_line/test_powder_calibrate.py _________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/command_line/test_powder_calibrate.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/command_line/test_powder_calibrate.py:12: in 223s from dials.command_line import powder_calibrate 223s /usr/lib/python3/dist-packages/dials/command_line/powder_calibrate.py:52: in 223s from pyFAI.goniometer import SingleGeometry as pfSingleGeometry 223s /usr/lib/python3/dist-packages/pyFAI/goniometer.py:47: in 223s from silx.image import marchingsquares 223s /usr/lib/python3/dist-packages/silx/image/marchingsquares/__init__.py:43: in 223s from ._mergeimpl import MarchingSquaresMergeImpl 223s E ModuleNotFoundError: No module named 'silx.image.marchingsquares._mergeimpl' 223s ____________ ERROR collecting tests/command_line/test_ssx_index.py _____________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/command_line/test_ssx_index.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/libtbx/utils.py:1613: in __init__ 223s try: module = __import__(module_path) 223s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/__init__.py:19: in 223s from .pinkindexer import PinkIndexer 223s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/pinkindexer.py:5: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s 223s During handling of the above exception, another exception occurred: 223s /usr/lib/python3/dist-packages/libtbx/utils.py:1613: in __init__ 223s try: module = __import__(module_path) 223s /usr/lib/python3/dist-packages/dials/command_line/index.py:57: in 223s phil_scope = iotbx.phil.parse( 223s /usr/lib/python3/dist-packages/iotbx/phil.py:79: in parse 223s return libtbx.phil.parse( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2197: in parse 223s result = result.process_includes( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2004: in process_includes 223s result.append(object.process_includes( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:1994: in process_includes 223s result.extend(process_include_scope( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2037: in process_include_scope 223s imported = import_python_object( 223s /usr/lib/python3/dist-packages/libtbx/utils.py:1615: in __init__ 223s raise ImportError("%sno module %s%s or possibly import errors in " 223s E ImportError: include scope: no module dials.algorithms.indexing.lattice_search (input line 5) or possibly import errors in module dials.algorithms.indexing.lattice_search 223s 223s During handling of the above exception, another exception occurred: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/command_line/test_ssx_index.py:13: in 223s from dials.command_line.ssx_index import run 223s /usr/lib/python3/dist-packages/dials/command_line/ssx_index.py:80: in 223s phil_scope = phil.parse( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2197: in parse 223s result = result.process_includes( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:1994: in process_includes 223s result.extend(process_include_scope( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2037: in process_include_scope 223s imported = import_python_object( 223s /usr/lib/python3/dist-packages/libtbx/utils.py:1615: in __init__ 223s raise ImportError("%sno module %s%s or possibly import errors in " 223s E ImportError: include scope: no module dials.command_line.index (input line 20) or possibly import errors in module dials.command_line.index 223s __________ ERROR collecting tests/command_line/test_stills_process.py __________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/command_line/test_stills_process.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/libtbx/utils.py:1613: in __init__ 223s try: module = __import__(module_path) 223s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/__init__.py:19: in 223s from .pinkindexer import PinkIndexer 223s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/pinkindexer.py:5: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s 223s During handling of the above exception, another exception occurred: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/command_line/test_stills_process.py:17: in 223s from dials.command_line.stills_process import Processor, phil_scope 223s /usr/lib/python3/dist-packages/dials/command_line/stills_process.py:343: in 223s phil_scope = parse(control_phil_str + dials_phil_str, process_includes=True).fetch( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2197: in parse 223s result = result.process_includes( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2004: in process_includes 223s result.append(object.process_includes( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:1994: in process_includes 223s result.extend(process_include_scope( 223s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2037: in process_include_scope 223s imported = import_python_object( 223s /usr/lib/python3/dist-packages/libtbx/utils.py:1615: in __init__ 223s raise ImportError("%sno module %s%s or possibly import errors in " 223s E ImportError: include scope: no module dials.algorithms.indexing.lattice_search (input line 158) or possibly import errors in module dials.algorithms.indexing.lattice_search 223s _____________ ERROR collecting tests/command_line/test_symmetry.py _____________ 223s ImportError while importing test module '/tmp/autopkgtest.34gtt2/autopkgtest_tmp/tests/command_line/test_symmetry.py'. 223s Hint: make sure your test modules/packages have valid Python names. 223s Traceback: 223s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 223s mod = import_path( 223s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 223s importlib.import_module(module_name) 223s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 223s return _bootstrap._gcd_import(name[level:], package, level) 223s :1387: in _gcd_import 223s ??? 223s :1360: in _find_and_load 223s ??? 223s :1331: in _find_and_load_unlocked 223s ??? 223s :935: in _load_unlocked 223s ??? 223s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 223s exec(co, module.__dict__) 223s tests/command_line/test_symmetry.py:19: in 223s from dials.command_line import symmetry 223s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 223s from dials.algorithms.merging.merge import prepare_merged_reflection_table 223s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 223s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 223s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 223s import gemmi 223s E ModuleNotFoundError: No module named 'gemmi' 223s =============================== warnings summary =============================== 223s ../../../usr/lib/python3/dist-packages/dials/extensions/__init__.py:3 223s /usr/lib/python3/dist-packages/dials/extensions/__init__.py:3: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 223s import pkg_resources 223s 223s ../../../usr/lib/python3/dist-packages/pytools/persistent_dict.py:63 223s /usr/lib/python3/dist-packages/pytools/persistent_dict.py:63: RecommendedHashNotFoundWarning: Unable to import recommended hash 'siphash24.siphash13', falling back to 'hashlib.sha256'. Run 'python3 -m pip install siphash24' to install the recommended hash. 223s warn("Unable to import recommended hash 'siphash24.siphash13', " 223s 223s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 223s =========================== short test summary info ============================ 223s ERROR tests/algorithms/indexing/lattice_search/test_lattice_search.py 223s ERROR tests/algorithms/merging/test_french_wilson.py 223s ERROR tests/algorithms/merging/test_merge.py 223s ERROR tests/algorithms/scaling/test_scale.py 223s ERROR tests/command_line/test_cosym.py 223s ERROR tests/command_line/test_damage_analysis.py 223s ERROR tests/command_line/test_export.py 223s ERROR tests/command_line/test_powder_calibrate.py 223s ERROR tests/command_line/test_ssx_index.py 223s ERROR tests/command_line/test_stills_process.py 223s ERROR tests/command_line/test_symmetry.py 223s !!!!!!!!!!!!!!!!!!! Interrupted: 11 errors during collection !!!!!!!!!!!!!!!!!!! 223s ======================= 2 warnings, 11 errors in 10.97s ======================== 224s autopkgtest [03:44:55]: test command1: -----------------------] 224s command1 FAIL non-zero exit status 2 224s autopkgtest [03:44:55]: test command1: - - - - - - - - - - results - - - - - - - - - - 225s autopkgtest [03:44:56]: @@@@@@@@@@@@@@@@@@@@ summary 225s command1 FAIL non-zero exit status 2 238s virt: nova [W] Skipping flock for amd64 238s virt: Creating nova instance adt-plucky-amd64-dials-20241117-034110-juju-7f2275-prod-proposed-migration-environment-2-0dd21031-9475-45c2-a1ca-2bc0f790f19f from image adt/ubuntu-plucky-amd64-server-20241116.img (UUID b32b57e2-04e1-4e84-814c-fcac83d3276b)...