0s autopkgtest [13:35:14]: starting date and time: 2024-11-14 13:35:14+0000 0s autopkgtest [13:35:14]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [13:35:14]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fl2k2ato/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dials,src:cctbx,src:python3-stdlib-extensions,src:python3-defaults --apt-upgrade dials --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=dials/3.22.1+dfsg3-1 cctbx/2024.10+ds2+~3.22.1+ds1-1 python3-stdlib-extensions/3.12.7-1 python3-defaults/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-17.secgroup --name adt-plucky-amd64-dials-20241114-133514-juju-7f2275-prod-proposed-migration-environment-20-cb61bbaa-76e0-422d-97a1-9a704f3b08f1 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 47s autopkgtest [13:36:01]: testbed dpkg architecture: amd64 47s autopkgtest [13:36:01]: testbed apt version: 2.9.8 47s autopkgtest [13:36:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB] 48s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 48s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [983 kB] 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.9 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [138 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [749 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [291 kB] 49s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1084 B] 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9252 B] 49s Fetched 2484 kB in 1s (2938 kB/s) 49s Reading package lists... 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 52s The following NEW packages will be installed: 52s python3.13-gdbm 52s The following packages will be upgraded: 52s libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 52s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 116 kB of archives. 52s After this operation, 100 kB of additional disk space will be used. 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 52s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 52s Fetched 116 kB in 0s (331 kB/s) 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 52s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 52s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 53s Setting up python3-minimal (3.12.7-1) ... 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 53s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 53s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 53s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 53s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 53s Selecting previously unselected package python3.13-gdbm. 53s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 53s Unpacking python3.13-gdbm (3.13.0-2) ... 53s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 53s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 53s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 53s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 53s Setting up python3.13-gdbm (3.13.0-2) ... 53s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 53s Setting up python3 (3.12.7-1) ... 53s Setting up python3-gdbm:amd64 (3.12.7-1) ... 53s Setting up pastebinit (1.7.1-1) ... 53s Processing triggers for man-db (2.12.1-3) ... 54s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 55s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 56s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s autopkgtest [13:36:13]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 59s autopkgtest [13:36:13]: @@@@@@@@@@@@@@@@@@@@ apt-source dials 62s Get:1 http://ftpmaster.internal/ubuntu plucky/universe dials 3.17.0+dfsg3-4 (dsc) [2573 B] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/universe dials 3.17.0+dfsg3-4 (tar) [8343 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/universe dials 3.17.0+dfsg3-4 (diff) [13.5 kB] 62s gpgv: Signature made Tue Sep 24 11:13:56 2024 UTC 62s gpgv: using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC 62s gpgv: Can't check signature: No public key 62s dpkg-source: warning: cannot verify inline signature for ./dials_3.17.0+dfsg3-4.dsc: no acceptable signature found 62s autopkgtest [13:36:16]: testing package dials version 3.17.0+dfsg3-4 63s autopkgtest [13:36:17]: build not needed 64s autopkgtest [13:36:18]: test command1: preparing testbed 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 70s Starting pkgProblemResolver with broken count: 0 70s Starting 2 pkgProblemResolver with broken count: 0 70s Done 70s The following additional packages will be installed: 70s adwaita-icon-theme at-spi2-common blt clang-17 dconf-gsettings-backend 70s dconf-service dials fontconfig fontconfig-config fonts-dejavu-core 70s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-katex 70s fonts-lato fonts-lyx fonts-mathjax gdb gtk-update-icon-cache 70s hicolor-icon-theme humanity-icon-theme libaec0 libann-cctbx-dev 70s libann-cctbx0 libantlr3c-3.4-0 libasan8 libasyncns0 libatk-bridge2.0-0t64 70s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 70s libavahi-common3 libbabeltrace1 libblas3 libboost-numpy1.83.0 70s libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 70s libboost-thread1.83.0 libboost-timer1.83.0 libboost1.83-dev 70s libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 70s libccp4f0t64 libcctbx-dev libcctbx0 libclang-common-17-dev libclang-cpp17t64 70s libclang1-17t64 libcolord2 libcups2t64 libdatrie1 libdconf1 70s libdebuginfod-common libdebuginfod1t64 libdeflate0 libdouble-conversion3 70s libdrm-amdgpu1 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 70s libexpat1-dev libflac12t64 libfontconfig1 libgbm1 libgc1 libgcc-14-dev 70s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgl1 70s libgl1-mesa-dri libglapi-mesa libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 70s libglx0 libgomp1 libgraphite2-3 libgstreamer-plugins-base1.0-0 70s libgstreamer1.0-0 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 70s libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libhwloc15 libhyphen0 libice6 70s libimagequant0 libinput-bin libinput10 libipt2 libitm1 libjbig0 70s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 70s libjs-katex libjs-mathjax libjs-sphinxdoc libjs-underscore liblapack3 70s liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 liblsan0 liblzf1 libmd4c0 70s libmmdb2-0 libmp3lame0 libmpg123-0t64 libmtdev1t64 libnetcdf19t64 70s libnorm1t64 libnotify4 libobjc-14-dev libobjc4 libogg0 libopengl0 70s libopenjp2-7 libopus0 liborc-0.4-0t64 libpango-1.0-0 libpangocairo-1.0-0 70s libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 libpcre2-32-0 libpgm-5.3-0t64 70s libpixman-1-0 libpocl2-common libpocl2t64 libpulse0 libpython3-dev 70s libpython3.12-dev libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 70s libqt5charts5 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 70s libqt5help5 libqt5location5 libqt5multimedia5 libqt5multimediawidgets5 70s libqt5network5t64 libqt5opengl5t64 libqt5positioning5 70s libqt5positioningquick5 libqt5printsupport5t64 libqt5qml5 libqt5qmlmodels5 70s libqt5quick5 libqt5quickwidgets5 libqt5remoteobjects5 libqt5sensors5 70s libqt5serialport5 libqt5sql5t64 libqt5svg5 libqt5test5t64 70s libqt5texttospeech5 libqt5webchannel5 libqt5webkit5 libqt5websockets5 70s libqt5widgets5t64 libqt5xml5t64 libqt5xmlpatterns5 libquadmath0 libraqm0 70s libsharpyuv0 libsm6 libsndfile1 libsodium23 libsource-highlight-common 70s libsource-highlight4t64 libssm2 libstdc++-14-dev libsz2 libtcl8.6 70s libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libvorbis0a 70s libvorbisenc2 libvulkan1 libwacom-common libwacom9 libwayland-client0 70s libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 70s libwebpmux3 libwoff1 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 70s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 70s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 70s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 70s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 70s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 70s libxinerama1 libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1 70s libxslt1.1 libxss1 libxtst6 libxxf86vm1 libzmq5 llvm-17-linker-tools 70s mesa-libgallium ocl-icd-libopencl1 pocl-opencl-icd pymol-data 70s python-matplotlib-data python3-all python3-appdirs python3-asttokens 70s python3-brotli python3-cctbx python3-comm python3-contourpy python3-coverage 70s python3-cycler python3-dateutil python3-debugpy python3-decorator 70s python3-dev python3-dials python3-dials-data python3-execnet 70s python3-executing python3-fabio python3-fastjsonschema python3-fonttools 70s python3-fs python3-h5py python3-h5py-serial python3-hdf5plugin 70s python3-importlib-resources python3-iniconfig python3-ipykernel 70s python3-ipython python3-jedi python3-joblib python3-jupyter-client 70s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 70s python3-mako python3-matplotlib python3-matplotlib-inline python3-mpmath 70s python3-mrcfile python3-natsort python3-nbformat python3-nest-asyncio 70s python3-numexpr python3-numpy python3-nxmx python3-opengl 70s python3-ordered-set python3-packaging python3-pandas python3-pandas-lib 70s python3-parso python3-pexpect python3-pil python3-pil.imagetk python3-pint 70s python3-platformdirs python3-plotly python3-pluggy python3-pooch 70s python3-procrunner python3-prompt-toolkit python3-psutil python3-ptyprocess 70s python3-pure-eval python3-py python3-pycbf python3-pyfai python3-pymol 70s python3-pyopencl python3-pyqt5 python3-pyqt5.qtchart 70s python3-pyqt5.qtmultimedia python3-pyqt5.qtopengl 70s python3-pyqt5.qtpositioning python3-pyqt5.qtquick 70s python3-pyqt5.qtremoteobjects python3-pyqt5.qtsensors 70s python3-pyqt5.qtserialport python3-pyqt5.qtsql python3-pyqt5.qtsvg 70s python3-pyqt5.qttexttospeech python3-pyqt5.qtwebchannel 70s python3-pyqt5.qtwebkit python3-pyqt5.qtwebsockets 70s python3-pyqt5.qtxmlpatterns python3-pyqt5.sip python3-pytest 70s python3-pytest-mock python3-pytest-xdist python3-pytools python3-qtconsole 70s python3-qtpy python3-scipy python3-silx python3-six python3-sklearn 70s python3-sklearn-lib python3-stack-data python3-sympy python3-tabulate 70s python3-tenacity python3-threadpoolctl python3-tk python3-tornado 70s python3-tqdm python3-traitlets python3-typeshed python3-tz python3-ufolib2 70s python3-unicodedata2 python3-wcwidth python3-wxgtk4.0 python3-zmq 70s python3.12-dev python3.12-tk python3.13 python3.13-minimal python3.13-tk 70s sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data x11-common 70s zlib1g-dev 70s Suggested packages: 70s adwaita-icon-theme-legacy blt-demo clang-17-doc wasi-libc gdb-doc gdbserver 70s libboost1.83-doc gccxml libboost-atomic1.83-dev libboost-chrono1.83-dev 70s libboost-container1.83-dev libboost-context1.83-dev 70s libboost-contract1.83-dev libboost-coroutine1.83-dev 70s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 70s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 70s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 70s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 70s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 70s libboost-numpy1.83-dev libboost-program-options1.83-dev 70s libboost-random1.83-dev libboost-regex1.83-dev 70s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 70s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 70s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 70s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 70s colord cups-common glew-utils libvisual-0.4-plugins gstreamer1.0-tools gvfs 70s libhwloc-contrib-plugins libjs-jquery-ui-docs fonts-mathjax-extras 70s fonts-stix libjs-mathjax-doc liblcms2-utils notification-daemon opus-tools 70s pulseaudio qgnomeplatform-qt5 qt5-image-formats-plugins 70s qt5-qmltooling-plugins libstdc++-14-doc tcl8.6 tk8.6 libwacom-bin 70s python-coverage-doc python-cycler-doc execnet-doc python-fabio-doc 70s python-fastjsonschema-doc python-h5py-doc python-ipython-doc 70s python-joblib-doc python-jupyter-client-doc python3-pip python-lxml-doc 70s python-mako-doc python3-beaker cm-super-minimal dvipng ffmpeg fonts-staypuft 70s ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 70s python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject 70s python3-sip texlive-extra-utils texlive-latex-extra python-mpmath-doc 70s python3-gmpy2 python-natsort-doc gcc gfortran python-numpy-doc libgle3 70s python-pandas-doc python3-statsmodels python-pexpect-doc python-pil-doc 70s python3-paramiko subversion python-pytest-mock-doc python-scipy-doc 70s python3-dap python-sklearn-doc texlive-fonts-extra python-sympy-doc 70s python-tenacity-doc tix python3-tk-dbg python3-pycurl python-tornado-doc 70s python3-twisted python-traitlets-doc wx3.2-doc python3.13-venv 70s python3.13-doc binfmt-support 70s Recommended packages: 70s librsvg2-common llvm-17-dev libc-dbg at-spi2-core libclang-rt-17-dev 70s libgdk-pixbuf2.0-bin libgl1-amber-dri gstreamer1.0-plugins-base libgtk-3-bin 70s libhwloc-plugins javascript-common qttranslations5-l10n 70s qt5-gtk-platformtheme qtwayland5 geoclue-2.0 libqt5sql5-sqlite 70s | libqt5sql5-mysql | libqt5sql5-odbc | libqt5sql5-psql | libqt5sql5-tds 70s | libqt5sql5-ibase qtspeech5-speechd-plugin | qtspeech5-flite-plugin 70s mesa-vulkan-drivers | vulkan-icd hdf5-filter-plugin-blosc-serial 70s hdf5-filter-plugin-bz2-serial hdf5-filter-plugin-lz4-serial 70s hdf5-filter-plugin-zfp-serial hdf5-plugin-lzf python3-simplejson python3-bs4 70s python3-cssselect python3-html5lib libglut-dev python3-bottleneck 70s python3-odf python3-openpyxl python3-tables python3-numba python3-olefile 70s python-pyopencl-doc python3-pyqt5.qtwebengine isympy-common 70s The following NEW packages will be installed: 70s adwaita-icon-theme at-spi2-common autopkgtest-satdep blt clang-17 70s dconf-gsettings-backend dconf-service dials fontconfig fontconfig-config 70s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 70s fonts-glyphicons-halflings fonts-katex fonts-lato fonts-lyx fonts-mathjax 70s gdb gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme libaec0 70s libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libasan8 libasyncns0 70s libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 70s libavahi-common-data libavahi-common3 libbabeltrace1 libblas3 70s libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev 70s libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 70s libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data 70s libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 70s libclang-common-17-dev libclang-cpp17t64 libclang1-17t64 libcolord2 70s libcups2t64 libdatrie1 libdconf1 libdebuginfod-common libdebuginfod1t64 70s libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 70s libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 libexpat1-dev libflac12t64 70s libfontconfig1 libgbm1 libgc1 libgcc-14-dev libgdk-pixbuf-2.0-0 70s libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 70s libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 70s libgraphite2-3 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 70s libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhdf5-103-1t64 70s libhdf5-hl-100t64 libhwasan0 libhwloc15 libhyphen0 libice6 libimagequant0 70s libinput-bin libinput10 libipt2 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 70s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-katex libjs-mathjax 70s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 70s libllvm17t64 liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmp3lame0 libmpg123-0t64 70s libmtdev1t64 libnetcdf19t64 libnorm1t64 libnotify4 libobjc-14-dev libobjc4 70s libogg0 libopengl0 libopenjp2-7 libopus0 liborc-0.4-0t64 libpango-1.0-0 70s libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 70s libpcre2-32-0 libpgm-5.3-0t64 libpixman-1-0 libpocl2-common libpocl2t64 70s libpulse0 libpython3-dev libpython3.12-dev libpython3.13-minimal 70s libpython3.13-stdlib libqhull-r8.0 libqt5charts5 libqt5core5t64 70s libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5location5 70s libqt5multimedia5 libqt5multimediawidgets5 libqt5network5t64 70s libqt5opengl5t64 libqt5positioning5 libqt5positioningquick5 70s libqt5printsupport5t64 libqt5qml5 libqt5qmlmodels5 libqt5quick5 70s libqt5quickwidgets5 libqt5remoteobjects5 libqt5sensors5 libqt5serialport5 70s libqt5sql5t64 libqt5svg5 libqt5test5t64 libqt5texttospeech5 70s libqt5webchannel5 libqt5webkit5 libqt5websockets5 libqt5widgets5t64 70s libqt5xml5t64 libqt5xmlpatterns5 libquadmath0 libraqm0 libsharpyuv0 libsm6 70s libsndfile1 libsodium23 libsource-highlight-common libsource-highlight4t64 70s libssm2 libstdc++-14-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 70s libtk8.6 libtsan2 libubsan1 libvorbis0a libvorbisenc2 libvulkan1 70s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 70s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 70s libwoff1 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 70s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 70s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 70s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 70s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 70s libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 70s libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 70s libxtst6 libxxf86vm1 libzmq5 llvm-17-linker-tools mesa-libgallium 70s ocl-icd-libopencl1 pocl-opencl-icd pymol-data python-matplotlib-data 70s python3-all python3-appdirs python3-asttokens python3-brotli python3-cctbx 70s python3-comm python3-contourpy python3-coverage python3-cycler 70s python3-dateutil python3-debugpy python3-decorator python3-dev python3-dials 70s python3-dials-data python3-execnet python3-executing python3-fabio 70s python3-fastjsonschema python3-fonttools python3-fs python3-h5py 70s python3-h5py-serial python3-hdf5plugin python3-importlib-resources 70s python3-iniconfig python3-ipykernel python3-ipython python3-jedi 70s python3-joblib python3-jupyter-client python3-jupyter-core 70s python3-kiwisolver python3-lxml python3-lz4 python3-mako python3-matplotlib 70s python3-matplotlib-inline python3-mpmath python3-mrcfile python3-natsort 70s python3-nbformat python3-nest-asyncio python3-numexpr python3-numpy 70s python3-nxmx python3-opengl python3-ordered-set python3-packaging 70s python3-pandas python3-pandas-lib python3-parso python3-pexpect python3-pil 70s python3-pil.imagetk python3-pint python3-platformdirs python3-plotly 70s python3-pluggy python3-pooch python3-procrunner python3-prompt-toolkit 70s python3-psutil python3-ptyprocess python3-pure-eval python3-py python3-pycbf 70s python3-pyfai python3-pymol python3-pyopencl python3-pyqt5 70s python3-pyqt5.qtchart python3-pyqt5.qtmultimedia python3-pyqt5.qtopengl 70s python3-pyqt5.qtpositioning python3-pyqt5.qtquick 70s python3-pyqt5.qtremoteobjects python3-pyqt5.qtsensors 70s python3-pyqt5.qtserialport python3-pyqt5.qtsql python3-pyqt5.qtsvg 70s python3-pyqt5.qttexttospeech python3-pyqt5.qtwebchannel 70s python3-pyqt5.qtwebkit python3-pyqt5.qtwebsockets 70s python3-pyqt5.qtxmlpatterns python3-pyqt5.sip python3-pytest 70s python3-pytest-mock python3-pytest-xdist python3-pytools python3-qtconsole 70s python3-qtpy python3-scipy python3-silx python3-six python3-sklearn 70s python3-sklearn-lib python3-stack-data python3-sympy python3-tabulate 70s python3-tenacity python3-threadpoolctl python3-tk python3-tornado 70s python3-tqdm python3-traitlets python3-typeshed python3-tz python3-ufolib2 70s python3-unicodedata2 python3-wcwidth python3-wxgtk4.0 python3-zmq 70s python3.12-dev python3.12-tk python3.13 python3.13-minimal python3.13-tk 70s sphinx-rtd-theme-common tk8.6-blt2.5 ubuntu-mono unicode-data x11-common 70s zlib1g-dev 70s 0 upgraded, 383 newly installed, 0 to remove and 0 not upgraded. 70s Need to get 336 MB/336 MB of archives. 70s After this operation, 1742 MB of additional disk space will be used. 70s Get:1 /tmp/autopkgtest.zjCLKm/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [740 B] 70s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 72s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod-common all 0.192-4 [15.4 kB] 72s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgstreamer1.0-0 amd64 1.24.9-1 [1197 kB] 72s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liborc-0.4-0t64 amd64 1:0.4.40-1 [205 kB] 72s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.24.9-1 [1025 kB] 72s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libhyphen0 amd64 2.8.8-7build3 [26.5 kB] 72s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 73s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 73s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdouble-conversion3 amd64 3.3.0-1build1 [40.3 kB] 73s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 73s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-1ubuntu1 [2036 kB] 73s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 73s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 73s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 73s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 73s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 73s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 73s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB] 73s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 73s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [21.7 kB] 73s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 73s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB] 73s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB] 73s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.3-1ubuntu1 [42.4 kB] 73s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 73s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B] 73s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 73s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 73s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 73s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 73s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 73s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.3-1ubuntu1 [9904 kB] 74s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.3-1ubuntu1 [32.0 kB] 74s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB] 74s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 74s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.3-1ubuntu1 [129 kB] 74s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 74s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 74s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 74s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 74s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB] 74s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.3-1ubuntu1 [34.4 kB] 74s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.3-1ubuntu1 [153 kB] 74s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 74s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 74s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 74s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 74s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 74s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 74s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [14.4 kB] 74s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom-common all 2.13.0-1 [98.6 kB] 74s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libwacom9 amd64 2.13.0-1 [25.1 kB] 74s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput-bin amd64 1.26.2-1 [22.8 kB] 74s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libinput10 amd64 1.26.2-1 [137 kB] 74s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 74s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-1ubuntu1 [221 kB] 74s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-1ubuntu1 [724 kB] 75s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 75s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 75s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-util1 amd64 0.4.0-1build3 [10.7 kB] 75s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 75s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-keysyms1 amd64 0.4.0-1build4 [7956 B] 75s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 75s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render-util0 amd64 0.3.9-1build4 [9608 B] 75s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 75s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 75s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 75s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 75s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1build1 [14.5 kB] 75s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 75s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-1ubuntu1 [3791 kB] 75s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5positioning5 amd64 5.15.15+dfsg-2 [223 kB] 75s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 75s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 75s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 75s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.10-1ubuntu2 [271 kB] 75s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-1ubuntu1 [2561 kB] 75s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-1ubuntu1 [208 kB] 75s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5qml5 amd64 5.15.15+dfsg-3 [1618 kB] 75s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5qmlmodels5 amd64 5.15.15+dfsg-3 [226 kB] 75s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5quick5 amd64 5.15.15+dfsg-3 [1880 kB] 76s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sensors5 amd64 5.15.15-2 [128 kB] 76s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5webchannel5 amd64 5.15.15-2 [66.2 kB] 76s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 76s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 76s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libwoff1 amd64 1.0.2-2build1 [45.3 kB] 76s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 76s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-41 [14.7 MB] 77s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 77s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 77s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [7888 B] 77s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 77s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 77s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 77s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 77s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-1 [147 kB] 77s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 gtk-update-icon-cache amd64 4.16.5+ds-1 [52.4 kB] 77s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 hicolor-icon-theme all 0.18-1 [13.5 kB] 77s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 humanity-icon-theme all 0.6.16 [1282 kB] 77s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 ubuntu-mono all 24.04-0ubuntu1 [151 kB] 77s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 adwaita-icon-theme all 47.0-2 [525 kB] 77s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 at-spi2-common all 2.54.0-1 [8774 B] 77s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 78s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 78s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 78s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 79s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 79s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 79s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 82s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 libclang-cpp17t64 amd64 1:17.0.6-18 [12.8 MB] 82s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 82s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 82s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 82s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 82s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 82s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 82s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 83s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 83s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 83s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 83s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libgc1 amd64 1:8.2.6-2 [90.6 kB] 83s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 libobjc4 amd64 14.2.0-8ubuntu1 [47.1 kB] 83s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 libobjc-14-dev amd64 14.2.0-8ubuntu1 [194 kB] 83s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 libclang-common-17-dev amd64 1:17.0.6-18 [690 kB] 83s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 llvm-17-linker-tools amd64 1:17.0.6-18 [1301 kB] 83s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libclang1-17t64 amd64 1:17.0.6-18 [7291 kB] 83s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 clang-17 amd64 1:17.0.6-18 [78.6 kB] 83s Get:129 http://ftpmaster.internal/ubuntu plucky/main amd64 libdconf1 amd64 0.40.0-4build2 [39.4 kB] 83s Get:130 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-service amd64 0.40.0-4build2 [27.5 kB] 83s Get:131 http://ftpmaster.internal/ubuntu plucky/main amd64 dconf-gsettings-backend amd64 0.40.0-4build2 [22.1 kB] 83s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build1 [32.7 kB] 83s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build1 [45.1 kB] 83s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost1.83-dev amd64 1.83.0-3.2ubuntu2 [10.7 MB] 83s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-python1.83.0 amd64 1.83.0-3.2ubuntu2 [312 kB] 83s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.2-2 [140 kB] 83s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 83s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 84s Get:139 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 84s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 84s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 84s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 84s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 84s Get:144 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 84s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-python1.83-dev amd64 1.83.0-3.2ubuntu2 [338 kB] 84s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-python-dev amd64 1.83.0.2ubuntu1 [4516 B] 84s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4-data all 8.0.0-4 [65.2 kB] 84s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4c0t64 amd64 8.0.0-4 [104 kB] 84s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 84s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmmdb2-0 amd64 2.0.22-1 [363 kB] 84s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4f0t64 amd64 8.0.0-4 [228 kB] 84s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 libccp4-dev amd64 8.0.0-4 [42.4 kB] 84s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 84s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 84s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 84s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-4build1 [361 kB] 84s Get:157 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcctbx0 amd64 2024.8+ds2+~3.21.1+ds1-3 [2057 kB] 84s Get:158 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libcctbx-dev amd64 2024.8+ds2+~3.21.1+ds1-3 [1193 kB] 84s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-4build1 [164 kB] 84s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 84s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 84s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 84s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 84s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 84s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 84s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 84s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdf5plugin all 4.0.1-3 [20.3 kB] 84s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 84s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 84s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 84s Get:171 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 84s Get:172 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 84s Get:173 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 84s Get:174 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 84s Get:175 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 84s Get:176 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 84s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 84s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 84s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 84s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 84s Get:181 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 84s Get:182 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 84s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 84s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 84s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 84s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 84s Get:187 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 84s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 85s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 85s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 85s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 85s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 85s Get:193 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 85s Get:194 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 85s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 85s Get:196 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 85s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 85s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 85s Get:199 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 86s Get:200 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 86s Get:201 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 86s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 86s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 86s Get:204 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-importlib-resources all 6.4.0-1ubuntu1 [22.8 kB] 86s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 86s Get:206 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 86s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 86s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 87s Get:209 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 87s Get:210 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 87s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.3-3 [114 kB] 87s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 87s Get:213 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pint all 0.23-1 [211 kB] 87s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nxmx all 0.0.3-3 [15.7 kB] 87s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ordered-set all 4.1.0-1 [9778 B] 87s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB] 87s Get:217 http://ftpmaster.internal/ubuntu plucky/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 87s Get:218 http://ftpmaster.internal/ubuntu plucky/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 87s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-opengl all 3.1.7+dfsg-1 [612 kB] 87s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.sip amd64 12.15.0-1 [60.6 kB] 87s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-1ubuntu1 [124 kB] 87s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5designer5 amd64 5.15.15-2 [2827 kB] 87s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-1ubuntu1 [122 kB] 87s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5help5 amd64 5.15.15-2 [161 kB] 87s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-1ubuntu1 [149 kB] 87s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-1build1 [2726 kB] 87s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-1ubuntu1 [150 kB] 87s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-1build1 [129 kB] 87s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 87s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu1 [472 kB] 87s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 pymol-data all 3.0.0+dfsg-1 [1394 kB] 87s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymol amd64 3.0.0+dfsg-1 [4073 kB] 87s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.0-1 [91.6 kB] 87s Get:234 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 87s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 libwxbase3.2-1t64 amd64 3.2.5+dfsg-1 [903 kB] 87s Get:236 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk1.0-0t64 amd64 2.54.0-1 [55.1 kB] 87s Get:237 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 87s Get:238 http://ftpmaster.internal/ubuntu plucky/main amd64 libatspi2.0-0t64 amd64 2.54.0-1 [79.6 kB] 87s Get:239 http://ftpmaster.internal/ubuntu plucky/main amd64 libatk-bridge2.0-0t64 amd64 2.54.0-1 [66.3 kB] 87s Get:240 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 87s Get:241 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 87s Get:242 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo-gobject2 amd64 1.18.2-2 [127 kB] 87s Get:243 http://ftpmaster.internal/ubuntu plucky/main amd64 libcolord2 amd64 1.4.7-1build2 [149 kB] 87s Get:244 http://ftpmaster.internal/ubuntu plucky/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB] 87s Get:245 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 87s Get:246 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 87s Get:247 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 87s Get:248 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [252 kB] 87s Get:249 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [51.6 kB] 87s Get:250 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [29.1 kB] 87s Get:251 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-cursor0 amd64 1.23.0-1 [10.8 kB] 87s Get:252 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-egl1 amd64 1.23.0-1 [5662 B] 87s Get:253 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B] 87s Get:254 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcursor1 amd64 1:1.2.2-1 [20.9 kB] 87s Get:255 http://ftpmaster.internal/ubuntu plucky/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 87s Get:256 http://ftpmaster.internal/ubuntu plucky/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 87s Get:257 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 87s Get:258 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-common all 3.24.43-3ubuntu2 [1202 kB] 88s Get:259 http://ftpmaster.internal/ubuntu plucky/main amd64 libgtk-3-0t64 amd64 3.24.43-3ubuntu2 [2927 kB] 88s Get:260 http://ftpmaster.internal/ubuntu plucky/main amd64 libnotify4 amd64 0.8.3-1build2 [25.6 kB] 88s Get:261 http://ftpmaster.internal/ubuntu plucky/main amd64 libxtst6 amd64 2:1.2.3-1.1build1 [12.6 kB] 88s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 libwxgtk3.2-1t64 amd64 3.2.5+dfsg-1 [4537 kB] 88s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.5+dfsg-1 [52.3 kB] 88s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wxgtk4.0 amd64 4.2.1+dfsg-4 [7728 kB] 88s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build2 [44.9 kB] 88s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-3.2ubuntu2 [242 kB] 88s Get:267 http://ftpmaster.internal/ubuntu plucky/main amd64 libboost-thread1.83.0 amd64 1.83.0-3.2ubuntu2 [278 kB] 88s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 libboost-timer1.83.0 amd64 1.83.0-3.2ubuntu2 [241 kB] 88s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssm2 amd64 1.4.0-2build1 [87.7 kB] 88s Get:270 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-cctbx amd64 2024.8+ds2+~3.21.1+ds1-3 [28.1 MB] 90s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 90s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 90s Get:273 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 90s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fabio amd64 2024.4.0-2 [629 kB] 90s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-numexpr amd64 2.10.1-2 [117 kB] 90s Get:276 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-mako all 1.3.6-1 [63.5 kB] 90s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 90s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpocl2-common all 6.0-2 [82.6 kB] 90s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 90s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpocl2t64 amd64 6.0-2 [9782 kB] 90s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 pocl-opencl-icd amd64 6.0-2 [7164 B] 90s Get:282 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 90s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytools all 2024.1.14-1 [68.4 kB] 90s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyopencl amd64 2024.1-1 [502 kB] 90s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5svg5 amd64 5.15.15-2 [153 kB] 90s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsvg amd64 5.15.11+dfsg-1build1 [30.0 kB] 90s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 90s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-comm all 0.2.1-1 [7016 B] 90s Get:289 http://ftpmaster.internal/ubuntu plucky/main amd64 libbabeltrace1 amd64 1.5.11-4build1 [185 kB] 91s Get:290 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebuginfod1t64 amd64 0.192-4 [21.0 kB] 91s Get:291 http://ftpmaster.internal/ubuntu plucky/main amd64 libipt2 amd64 2.1.1-1 [58.9 kB] 91s Get:292 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight-common all 3.1.9-4.3build1 [64.2 kB] 91s Get:293 http://ftpmaster.internal/ubuntu plucky/main amd64 libsource-highlight4t64 amd64 3.1.9-4.3build1 [258 kB] 91s Get:294 http://ftpmaster.internal/ubuntu plucky/main amd64 gdb amd64 15.1-1ubuntu2 [4119 kB] 91s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu2 [147 kB] 91s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-debugpy amd64 1.8.8+ds-1ubuntu1 [936 kB] 91s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-parso all 0.8.3-1 [67.2 kB] 91s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 91s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB] 91s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib-inline all 0.1.6-2 [8784 B] 91s Get:301 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-ptyprocess all 0.7.0-6 [14.8 kB] 91s Get:302 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pexpect all 4.9-2 [48.1 kB] 91s Get:303 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 91s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-prompt-toolkit all 3.0.48-1 [256 kB] 91s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-asttokens all 2.4.1-2 [20.8 kB] 91s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-executing all 2.1.0-0.1 [24.4 kB] 91s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pure-eval all 0.2.3-1 [11.4 kB] 91s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB] 91s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipython all 8.20.0-1ubuntu1 [561 kB] 91s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 91s Get:311 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tornado amd64 6.4.1-3 [299 kB] 91s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-py all 1.11.0-2 [72.7 kB] 91s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 91s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 91s Get:315 http://ftpmaster.internal/ubuntu plucky/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 91s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 91s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-zmq amd64 24.0.1-5build1 [286 kB] 91s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-client all 8.6.2-3 [78.1 kB] 91s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nest-asyncio all 1.5.4-1 [6256 B] 92s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ipykernel all 6.29.5-1 [82.5 kB] 92s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5charts5 amd64 5.15.15-2 [519 kB] 92s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtchart amd64 5.15.7+dfsg-1 [147 kB] 92s Get:323 http://ftpmaster.internal/ubuntu plucky/main amd64 libasyncns0 amd64 0.8-6build4 [11.3 kB] 92s Get:324 http://ftpmaster.internal/ubuntu plucky/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 92s Get:325 http://ftpmaster.internal/ubuntu plucky/main amd64 libflac12t64 amd64 1.4.3+ds-2.1ubuntu2 [197 kB] 92s Get:326 http://ftpmaster.internal/ubuntu plucky/main amd64 libmp3lame0 amd64 3.100-6build1 [142 kB] 92s Get:327 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpg123-0t64 amd64 1.32.9-1 [191 kB] 92s Get:328 http://ftpmaster.internal/ubuntu plucky/main amd64 libopus0 amd64 1.5.2-2 [2913 kB] 92s Get:329 http://ftpmaster.internal/ubuntu plucky/main amd64 libvorbis0a amd64 1.3.7-2 [98.4 kB] 92s Get:330 http://ftpmaster.internal/ubuntu plucky/main amd64 libvorbisenc2 amd64 1.3.7-2 [80.8 kB] 92s Get:331 http://ftpmaster.internal/ubuntu plucky/main amd64 libsndfile1 amd64 1.2.2-1ubuntu5 [208 kB] 92s Get:332 http://ftpmaster.internal/ubuntu plucky/main amd64 libpulse0 amd64 1:16.1+dfsg1-5.1ubuntu1 [292 kB] 92s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5multimedia5 amd64 5.15.15-2 [308 kB] 92s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5multimediawidgets5 amd64 5.15.15-2 [42.2 kB] 92s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtmultimedia amd64 5.15.11+dfsg-1build1 [229 kB] 92s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5positioningquick5 amd64 5.15.15+dfsg-2 [43.4 kB] 92s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5location5 amd64 5.15.15+dfsg-2 [750 kB] 92s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtpositioning amd64 5.15.11+dfsg-1build1 [153 kB] 92s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5quickwidgets5 amd64 5.15.15+dfsg-3 [39.1 kB] 92s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtquick amd64 5.15.11+dfsg-1build1 [394 kB] 92s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5remoteobjects5 amd64 5.15.15-2 [210 kB] 92s Get:342 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtremoteobjects amd64 5.15.11+dfsg-1build1 [32.6 kB] 92s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsensors amd64 5.15.11+dfsg-1build1 [56.0 kB] 92s Get:344 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5serialport5 amd64 5.15.15-2 [37.6 kB] 92s Get:345 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtserialport amd64 5.15.11+dfsg-1build1 [28.4 kB] 92s Get:346 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtsql amd64 5.15.11+dfsg-1build1 [89.9 kB] 92s Get:347 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5texttospeech5 amd64 5.15.15-2 [22.1 kB] 92s Get:348 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qttexttospeech amd64 5.15.11+dfsg-1build1 [17.9 kB] 92s Get:349 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebchannel amd64 5.15.11+dfsg-1build1 [15.2 kB] 92s Get:350 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebkit amd64 5.15.11+dfsg-1build1 [111 kB] 92s Get:351 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5websockets5 amd64 5.15.15-2 [62.1 kB] 92s Get:352 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtwebsockets amd64 5.15.11+dfsg-1build1 [27.2 kB] 92s Get:353 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqt5xmlpatterns5 amd64 5.15.15-2 [934 kB] 92s Get:354 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyqt5.qtxmlpatterns amd64 5.15.11+dfsg-1build1 [44.7 kB] 92s Get:355 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-qtpy all 2.4.1-2 [51.4 kB] 92s Get:356 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-qtconsole all 5.5.2-1 [83.2 kB] 92s Get:357 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pooch all 1.8.2-1 [49.9 kB] 92s Get:358 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-silx amd64 2.1.2+dfsg-1 [2568 kB] 92s Get:359 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyfai amd64 2024.05-3 [3024 kB] 92s Get:360 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 92s Get:361 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 92s Get:362 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6 [3920 kB] 92s Get:363 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 92s Get:364 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 92s Get:365 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 92s Get:366 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 92s Get:367 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-katex all 0.16.10+~cs6.1.0-2 [775 kB] 93s Get:368 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-katex all 0.16.10+~cs6.1.0-2 [220 kB] 93s Get:369 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 93s Get:370 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 93s Get:371 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 93s Get:372 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 93s Get:373 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 93s Get:374 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 93s Get:375 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dials amd64 3.17.0+dfsg3-4 [3985 kB] 93s Get:376 http://ftpmaster.internal/ubuntu plucky/universe amd64 dials amd64 3.17.0+dfsg3-4 [7968 B] 93s Get:377 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 93s Get:378 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 93s Get:379 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 93s Get:380 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-dials-data all 2.4.0-2 [110 kB] 93s Get:381 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-execnet all 2.1.1-1 [33.4 kB] 93s Get:382 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-mock all 3.14.0-2 [11.7 kB] 93s Get:383 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] 94s Preconfiguring packages ... 94s Fetched 336 MB in 23s (14.6 MB/s) 94s Selecting previously unselected package fonts-lato. 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75549 files and directories currently installed.) 94s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 94s Unpacking fonts-lato (2.015-1) ... 94s Selecting previously unselected package libdebuginfod-common. 94s Preparing to unpack .../001-libdebuginfod-common_0.192-4_all.deb ... 94s Unpacking libdebuginfod-common (0.192-4) ... 94s Selecting previously unselected package libgstreamer1.0-0:amd64. 94s Preparing to unpack .../002-libgstreamer1.0-0_1.24.9-1_amd64.deb ... 94s Unpacking libgstreamer1.0-0:amd64 (1.24.9-1) ... 94s Selecting previously unselected package liborc-0.4-0t64:amd64. 94s Preparing to unpack .../003-liborc-0.4-0t64_1%3a0.4.40-1_amd64.deb ... 94s Unpacking liborc-0.4-0t64:amd64 (1:0.4.40-1) ... 94s Selecting previously unselected package libgstreamer-plugins-base1.0-0:amd64. 94s Preparing to unpack .../004-libgstreamer-plugins-base1.0-0_1.24.9-1_amd64.deb ... 94s Unpacking libgstreamer-plugins-base1.0-0:amd64 (1.24.9-1) ... 94s Selecting previously unselected package libhyphen0:amd64. 94s Preparing to unpack .../005-libhyphen0_2.8.8-7build3_amd64.deb ... 94s Unpacking libhyphen0:amd64 (2.8.8-7build3) ... 94s Selecting previously unselected package libjpeg-turbo8:amd64. 94s Preparing to unpack .../006-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 94s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 94s Selecting previously unselected package libjpeg8:amd64. 94s Preparing to unpack .../007-libjpeg8_8c-2ubuntu11_amd64.deb ... 94s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 94s Selecting previously unselected package libdouble-conversion3:amd64. 94s Preparing to unpack .../008-libdouble-conversion3_3.3.0-1build1_amd64.deb ... 94s Unpacking libdouble-conversion3:amd64 (3.3.0-1build1) ... 94s Selecting previously unselected package libpcre2-16-0:amd64. 94s Preparing to unpack .../009-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 94s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 95s Selecting previously unselected package libqt5core5t64:amd64. 95s Preparing to unpack .../010-libqt5core5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 95s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 95s Selecting previously unselected package fonts-dejavu-mono. 95s Preparing to unpack .../011-fonts-dejavu-mono_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-mono (2.37-8) ... 95s Selecting previously unselected package fonts-dejavu-core. 95s Preparing to unpack .../012-fonts-dejavu-core_2.37-8_all.deb ... 95s Unpacking fonts-dejavu-core (2.37-8) ... 95s Selecting previously unselected package fontconfig-config. 95s Preparing to unpack .../013-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 95s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 95s Selecting previously unselected package libfontconfig1:amd64. 95s Preparing to unpack .../014-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 95s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 95s Selecting previously unselected package fontconfig. 95s Preparing to unpack .../015-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 95s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 95s Selecting previously unselected package libglvnd0:amd64. 95s Preparing to unpack .../016-libglvnd0_1.7.0-1build1_amd64.deb ... 95s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 95s Selecting previously unselected package libwayland-server0:amd64. 95s Preparing to unpack .../017-libwayland-server0_1.23.0-1_amd64.deb ... 95s Unpacking libwayland-server0:amd64 (1.23.0-1) ... 95s Selecting previously unselected package libxcb-randr0:amd64. 95s Preparing to unpack .../018-libxcb-randr0_1.17.0-2_amd64.deb ... 95s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 95s Selecting previously unselected package libdrm-amdgpu1:amd64. 95s Preparing to unpack .../019-libdrm-amdgpu1_2.4.123-1_amd64.deb ... 95s Unpacking libdrm-amdgpu1:amd64 (2.4.123-1) ... 95s Selecting previously unselected package libpciaccess0:amd64. 95s Preparing to unpack .../020-libpciaccess0_0.17-3build1_amd64.deb ... 95s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 95s Selecting previously unselected package libdrm-intel1:amd64. 95s Preparing to unpack .../021-libdrm-intel1_2.4.123-1_amd64.deb ... 95s Unpacking libdrm-intel1:amd64 (2.4.123-1) ... 95s Selecting previously unselected package libdrm-radeon1:amd64. 95s Preparing to unpack .../022-libdrm-radeon1_2.4.123-1_amd64.deb ... 95s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ... 95s Selecting previously unselected package libglapi-mesa:amd64. 95s Preparing to unpack .../023-libglapi-mesa_24.2.3-1ubuntu1_amd64.deb ... 95s Unpacking libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 95s Selecting previously unselected package libx11-xcb1:amd64. 95s Preparing to unpack .../024-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 95s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 95s Selecting previously unselected package libxcb-dri2-0:amd64. 95s Preparing to unpack .../025-libxcb-dri2-0_1.17.0-2_amd64.deb ... 95s Unpacking libxcb-dri2-0:amd64 (1.17.0-2) ... 95s Selecting previously unselected package libxcb-dri3-0:amd64. 95s Preparing to unpack .../026-libxcb-dri3-0_1.17.0-2_amd64.deb ... 95s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 95s Selecting previously unselected package libxcb-present0:amd64. 95s Preparing to unpack .../027-libxcb-present0_1.17.0-2_amd64.deb ... 95s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 95s Selecting previously unselected package libxcb-sync1:amd64. 95s Preparing to unpack .../028-libxcb-sync1_1.17.0-2_amd64.deb ... 95s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 95s Selecting previously unselected package libxcb-xfixes0:amd64. 95s Preparing to unpack .../029-libxcb-xfixes0_1.17.0-2_amd64.deb ... 95s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 95s Selecting previously unselected package libxshmfence1:amd64. 95s Preparing to unpack .../030-libxshmfence1_1.3-1build5_amd64.deb ... 95s Unpacking libxshmfence1:amd64 (1.3-1build5) ... 95s Selecting previously unselected package mesa-libgallium:amd64. 95s Preparing to unpack .../031-mesa-libgallium_24.2.3-1ubuntu1_amd64.deb ... 95s Unpacking mesa-libgallium:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libgbm1:amd64. 96s Preparing to unpack .../032-libgbm1_24.2.3-1ubuntu1_amd64.deb ... 96s Unpacking libgbm1:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libwayland-client0:amd64. 96s Preparing to unpack .../033-libwayland-client0_1.23.0-1_amd64.deb ... 96s Unpacking libwayland-client0:amd64 (1.23.0-1) ... 96s Selecting previously unselected package libxcb-shm0:amd64. 96s Preparing to unpack .../034-libxcb-shm0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libegl-mesa0:amd64. 96s Preparing to unpack .../035-libegl-mesa0_24.2.3-1ubuntu1_amd64.deb ... 96s Unpacking libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libegl1:amd64. 96s Preparing to unpack .../036-libegl1_1.7.0-1build1_amd64.deb ... 96s Unpacking libegl1:amd64 (1.7.0-1build1) ... 96s Selecting previously unselected package libxcb-glx0:amd64. 96s Preparing to unpack .../037-libxcb-glx0_1.17.0-2_amd64.deb ... 96s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 96s Selecting previously unselected package libxfixes3:amd64. 96s Preparing to unpack .../038-libxfixes3_1%3a6.0.0-2build1_amd64.deb ... 96s Unpacking libxfixes3:amd64 (1:6.0.0-2build1) ... 96s Selecting previously unselected package libxxf86vm1:amd64. 96s Preparing to unpack .../039-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 96s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 96s Selecting previously unselected package libvulkan1:amd64. 96s Preparing to unpack .../040-libvulkan1_1.3.296.0-1_amd64.deb ... 96s Unpacking libvulkan1:amd64 (1.3.296.0-1) ... 96s Selecting previously unselected package libgl1-mesa-dri:amd64. 96s Preparing to unpack .../041-libgl1-mesa-dri_24.2.3-1ubuntu1_amd64.deb ... 96s Unpacking libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libglx-mesa0:amd64. 96s Preparing to unpack .../042-libglx-mesa0_24.2.3-1ubuntu1_amd64.deb ... 96s Unpacking libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 96s Selecting previously unselected package libglx0:amd64. 96s Preparing to unpack .../043-libglx0_1.7.0-1build1_amd64.deb ... 96s Unpacking libglx0:amd64 (1.7.0-1build1) ... 96s Selecting previously unselected package libgl1:amd64. 96s Preparing to unpack .../044-libgl1_1.7.0-1build1_amd64.deb ... 96s Unpacking libgl1:amd64 (1.7.0-1build1) ... 96s Selecting previously unselected package libgraphite2-3:amd64. 96s Preparing to unpack .../045-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 96s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 96s Selecting previously unselected package libharfbuzz0b:amd64. 96s Preparing to unpack .../046-libharfbuzz0b_10.0.1-1_amd64.deb ... 96s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 96s Selecting previously unselected package x11-common. 96s Preparing to unpack .../047-x11-common_1%3a7.7+23ubuntu3_all.deb ... 96s Unpacking x11-common (1:7.7+23ubuntu3) ... 96s Selecting previously unselected package libice6:amd64. 96s Preparing to unpack .../048-libice6_2%3a1.1.1-1_amd64.deb ... 96s Unpacking libice6:amd64 (2:1.1.1-1) ... 96s Selecting previously unselected package libmtdev1t64:amd64. 96s Preparing to unpack .../049-libmtdev1t64_1.1.6-1.2_amd64.deb ... 96s Unpacking libmtdev1t64:amd64 (1.1.6-1.2) ... 96s Selecting previously unselected package libwacom-common. 96s Preparing to unpack .../050-libwacom-common_2.13.0-1_all.deb ... 96s Unpacking libwacom-common (2.13.0-1) ... 96s Selecting previously unselected package libwacom9:amd64. 96s Preparing to unpack .../051-libwacom9_2.13.0-1_amd64.deb ... 96s Unpacking libwacom9:amd64 (2.13.0-1) ... 96s Selecting previously unselected package libinput-bin. 96s Preparing to unpack .../052-libinput-bin_1.26.2-1_amd64.deb ... 96s Unpacking libinput-bin (1.26.2-1) ... 96s Selecting previously unselected package libinput10:amd64. 96s Preparing to unpack .../053-libinput10_1.26.2-1_amd64.deb ... 96s Unpacking libinput10:amd64 (1.26.2-1) ... 96s Selecting previously unselected package libmd4c0:amd64. 96s Preparing to unpack .../054-libmd4c0_0.5.2-2_amd64.deb ... 96s Unpacking libmd4c0:amd64 (0.5.2-2) ... 96s Selecting previously unselected package libqt5dbus5t64:amd64. 96s Preparing to unpack .../055-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 96s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 96s Selecting previously unselected package libqt5network5t64:amd64. 96s Preparing to unpack .../056-libqt5network5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 96s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 96s Selecting previously unselected package libsm6:amd64. 96s Preparing to unpack .../057-libsm6_2%3a1.2.4-1_amd64.deb ... 96s Unpacking libsm6:amd64 (2:1.2.4-1) ... 96s Selecting previously unselected package libxcb-icccm4:amd64. 96s Preparing to unpack .../058-libxcb-icccm4_0.4.2-1_amd64.deb ... 96s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 97s Selecting previously unselected package libxcb-util1:amd64. 97s Preparing to unpack .../059-libxcb-util1_0.4.0-1build3_amd64.deb ... 97s Unpacking libxcb-util1:amd64 (0.4.0-1build3) ... 97s Selecting previously unselected package libxcb-image0:amd64. 97s Preparing to unpack .../060-libxcb-image0_0.4.0-2build1_amd64.deb ... 97s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 97s Selecting previously unselected package libxcb-keysyms1:amd64. 97s Preparing to unpack .../061-libxcb-keysyms1_0.4.0-1build4_amd64.deb ... 97s Unpacking libxcb-keysyms1:amd64 (0.4.0-1build4) ... 97s Selecting previously unselected package libxcb-render0:amd64. 97s Preparing to unpack .../062-libxcb-render0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-render-util0:amd64. 97s Preparing to unpack .../063-libxcb-render-util0_0.3.9-1build4_amd64.deb ... 97s Unpacking libxcb-render-util0:amd64 (0.3.9-1build4) ... 97s Selecting previously unselected package libxcb-shape0:amd64. 97s Preparing to unpack .../064-libxcb-shape0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-xinerama0:amd64. 97s Preparing to unpack .../065-libxcb-xinerama0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-xinput0:amd64. 97s Preparing to unpack .../066-libxcb-xinput0_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxcb-xkb1:amd64. 97s Preparing to unpack .../067-libxcb-xkb1_1.17.0-2_amd64.deb ... 97s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ... 97s Selecting previously unselected package libxkbcommon-x11-0:amd64. 97s Preparing to unpack .../068-libxkbcommon-x11-0_1.6.0-1build1_amd64.deb ... 97s Unpacking libxkbcommon-x11-0:amd64 (1.6.0-1build1) ... 97s Selecting previously unselected package libxrender1:amd64. 97s Preparing to unpack .../069-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 97s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 97s Selecting previously unselected package libqt5gui5t64:amd64. 97s Preparing to unpack .../070-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 97s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 97s Selecting previously unselected package libqt5positioning5:amd64. 97s Preparing to unpack .../071-libqt5positioning5_5.15.15+dfsg-2_amd64.deb ... 97s Unpacking libqt5positioning5:amd64 (5.15.15+dfsg-2) ... 97s Selecting previously unselected package libavahi-common-data:amd64. 97s Preparing to unpack .../072-libavahi-common-data_0.8-13ubuntu6_amd64.deb ... 97s Unpacking libavahi-common-data:amd64 (0.8-13ubuntu6) ... 97s Selecting previously unselected package libavahi-common3:amd64. 97s Preparing to unpack .../073-libavahi-common3_0.8-13ubuntu6_amd64.deb ... 97s Unpacking libavahi-common3:amd64 (0.8-13ubuntu6) ... 97s Selecting previously unselected package libavahi-client3:amd64. 97s Preparing to unpack .../074-libavahi-client3_0.8-13ubuntu6_amd64.deb ... 97s Unpacking libavahi-client3:amd64 (0.8-13ubuntu6) ... 97s Selecting previously unselected package libcups2t64:amd64. 97s Preparing to unpack .../075-libcups2t64_2.4.10-1ubuntu2_amd64.deb ... 97s Unpacking libcups2t64:amd64 (2.4.10-1ubuntu2) ... 97s Selecting previously unselected package libqt5widgets5t64:amd64. 97s Preparing to unpack .../076-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 97s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 97s Selecting previously unselected package libqt5printsupport5t64:amd64. 97s Preparing to unpack .../077-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 97s Unpacking libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 97s Selecting previously unselected package libqt5qml5:amd64. 97s Preparing to unpack .../078-libqt5qml5_5.15.15+dfsg-3_amd64.deb ... 97s Unpacking libqt5qml5:amd64 (5.15.15+dfsg-3) ... 97s Selecting previously unselected package libqt5qmlmodels5:amd64. 97s Preparing to unpack .../079-libqt5qmlmodels5_5.15.15+dfsg-3_amd64.deb ... 97s Unpacking libqt5qmlmodels5:amd64 (5.15.15+dfsg-3) ... 97s Selecting previously unselected package libqt5quick5:amd64. 97s Preparing to unpack .../080-libqt5quick5_5.15.15+dfsg-3_amd64.deb ... 97s Unpacking libqt5quick5:amd64 (5.15.15+dfsg-3) ... 97s Selecting previously unselected package libqt5sensors5:amd64. 97s Preparing to unpack .../081-libqt5sensors5_5.15.15-2_amd64.deb ... 97s Unpacking libqt5sensors5:amd64 (5.15.15-2) ... 97s Selecting previously unselected package libqt5webchannel5:amd64. 97s Preparing to unpack .../082-libqt5webchannel5_5.15.15-2_amd64.deb ... 97s Unpacking libqt5webchannel5:amd64 (5.15.15-2) ... 97s Selecting previously unselected package libsharpyuv0:amd64. 97s Preparing to unpack .../083-libsharpyuv0_1.4.0-0.1_amd64.deb ... 97s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 97s Selecting previously unselected package libwebp7:amd64. 97s Preparing to unpack .../084-libwebp7_1.4.0-0.1_amd64.deb ... 97s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 97s Selecting previously unselected package libwoff1:amd64. 97s Preparing to unpack .../085-libwoff1_1.0.2-2build1_amd64.deb ... 97s Unpacking libwoff1:amd64 (1.0.2-2build1) ... 97s Selecting previously unselected package libxslt1.1:amd64. 97s Preparing to unpack .../086-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 97s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 97s Selecting previously unselected package libqt5webkit5:amd64. 97s Preparing to unpack .../087-libqt5webkit5_5.212.0~alpha4-41_amd64.deb ... 97s Unpacking libqt5webkit5:amd64 (5.212.0~alpha4-41) ... 98s Selecting previously unselected package libpython3.13-minimal:amd64. 98s Preparing to unpack .../088-libpython3.13-minimal_3.13.0-2_amd64.deb ... 98s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 98s Selecting previously unselected package python3.13-minimal. 98s Preparing to unpack .../089-python3.13-minimal_3.13.0-2_amd64.deb ... 98s Unpacking python3.13-minimal (3.13.0-2) ... 98s Selecting previously unselected package libgdk-pixbuf2.0-common. 98s Preparing to unpack .../090-libgdk-pixbuf2.0-common_2.42.12+dfsg-1_all.deb ... 98s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 98s Selecting previously unselected package libdeflate0:amd64. 98s Preparing to unpack .../091-libdeflate0_1.22-1_amd64.deb ... 98s Unpacking libdeflate0:amd64 (1.22-1) ... 98s Selecting previously unselected package libjbig0:amd64. 98s Preparing to unpack .../092-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 98s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 98s Selecting previously unselected package liblerc4:amd64. 98s Preparing to unpack .../093-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 98s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 98s Selecting previously unselected package libtiff6:amd64. 98s Preparing to unpack .../094-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 98s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 98s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 98s Preparing to unpack .../095-libgdk-pixbuf-2.0-0_2.42.12+dfsg-1_amd64.deb ... 98s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... 98s Selecting previously unselected package gtk-update-icon-cache. 98s Preparing to unpack .../096-gtk-update-icon-cache_4.16.5+ds-1_amd64.deb ... 98s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 98s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 98s Unpacking gtk-update-icon-cache (4.16.5+ds-1) ... 98s Selecting previously unselected package hicolor-icon-theme. 98s Preparing to unpack .../097-hicolor-icon-theme_0.18-1_all.deb ... 98s Unpacking hicolor-icon-theme (0.18-1) ... 98s Selecting previously unselected package humanity-icon-theme. 98s Preparing to unpack .../098-humanity-icon-theme_0.6.16_all.deb ... 98s Unpacking humanity-icon-theme (0.6.16) ... 99s Selecting previously unselected package ubuntu-mono. 99s Preparing to unpack .../099-ubuntu-mono_24.04-0ubuntu1_all.deb ... 99s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 99s Selecting previously unselected package adwaita-icon-theme. 99s Preparing to unpack .../100-adwaita-icon-theme_47.0-2_all.deb ... 99s Unpacking adwaita-icon-theme (47.0-2) ... 99s Selecting previously unselected package at-spi2-common. 99s Preparing to unpack .../101-at-spi2-common_2.54.0-1_all.deb ... 99s Unpacking at-spi2-common (2.54.0-1) ... 99s Selecting previously unselected package libtcl8.6:amd64. 99s Preparing to unpack .../102-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 99s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 99s Selecting previously unselected package libxft2:amd64. 99s Preparing to unpack .../103-libxft2_2.3.6-1build1_amd64.deb ... 99s Unpacking libxft2:amd64 (2.3.6-1build1) ... 99s Selecting previously unselected package libxss1:amd64. 99s Preparing to unpack .../104-libxss1_1%3a1.2.3-1build3_amd64.deb ... 99s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 99s Selecting previously unselected package libtk8.6:amd64. 99s Preparing to unpack .../105-libtk8.6_8.6.15-1_amd64.deb ... 99s Unpacking libtk8.6:amd64 (8.6.15-1) ... 100s Selecting previously unselected package tk8.6-blt2.5. 100s Preparing to unpack .../106-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 100s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 100s Selecting previously unselected package blt. 100s Preparing to unpack .../107-blt_2.5.3+dfsg-7build1_amd64.deb ... 100s Unpacking blt (2.5.3+dfsg-7build1) ... 100s Selecting previously unselected package libllvm17t64:amd64. 100s Preparing to unpack .../108-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 100s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 100s Selecting previously unselected package libclang-cpp17t64. 100s Preparing to unpack .../109-libclang-cpp17t64_1%3a17.0.6-18_amd64.deb ... 100s Unpacking libclang-cpp17t64 (1:17.0.6-18) ... 100s Selecting previously unselected package libgomp1:amd64. 100s Preparing to unpack .../110-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package libitm1:amd64. 100s Preparing to unpack .../111-libitm1_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package libasan8:amd64. 100s Preparing to unpack .../112-libasan8_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package liblsan0:amd64. 100s Preparing to unpack .../113-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libtsan2:amd64. 101s Preparing to unpack .../114-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libubsan1:amd64. 101s Preparing to unpack .../115-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libhwasan0:amd64. 101s Preparing to unpack .../116-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libquadmath0:amd64. 101s Preparing to unpack .../117-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libgcc-14-dev:amd64. 101s Preparing to unpack .../118-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libstdc++-14-dev:amd64. 101s Preparing to unpack .../119-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libgc1:amd64. 101s Preparing to unpack .../120-libgc1_1%3a8.2.6-2_amd64.deb ... 101s Unpacking libgc1:amd64 (1:8.2.6-2) ... 101s Selecting previously unselected package libobjc4:amd64. 101s Preparing to unpack .../121-libobjc4_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libobjc4:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libobjc-14-dev:amd64. 101s Preparing to unpack .../122-libobjc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 101s Unpacking libobjc-14-dev:amd64 (14.2.0-8ubuntu1) ... 101s Selecting previously unselected package libclang-common-17-dev:amd64. 101s Preparing to unpack .../123-libclang-common-17-dev_1%3a17.0.6-18_amd64.deb ... 101s Unpacking libclang-common-17-dev:amd64 (1:17.0.6-18) ... 101s Selecting previously unselected package llvm-17-linker-tools. 101s Preparing to unpack .../124-llvm-17-linker-tools_1%3a17.0.6-18_amd64.deb ... 101s Unpacking llvm-17-linker-tools (1:17.0.6-18) ... 101s Selecting previously unselected package libclang1-17t64. 101s Preparing to unpack .../125-libclang1-17t64_1%3a17.0.6-18_amd64.deb ... 101s Unpacking libclang1-17t64 (1:17.0.6-18) ... 101s Selecting previously unselected package clang-17. 101s Preparing to unpack .../126-clang-17_1%3a17.0.6-18_amd64.deb ... 101s Unpacking clang-17 (1:17.0.6-18) ... 101s Selecting previously unselected package libdconf1:amd64. 101s Preparing to unpack .../127-libdconf1_0.40.0-4build2_amd64.deb ... 101s Unpacking libdconf1:amd64 (0.40.0-4build2) ... 101s Selecting previously unselected package dconf-service. 101s Preparing to unpack .../128-dconf-service_0.40.0-4build2_amd64.deb ... 101s Unpacking dconf-service (0.40.0-4build2) ... 102s Selecting previously unselected package dconf-gsettings-backend:amd64. 102s Preparing to unpack .../129-dconf-gsettings-backend_0.40.0-4build2_amd64.deb ... 102s Unpacking dconf-gsettings-backend:amd64 (0.40.0-4build2) ... 102s Selecting previously unselected package libann-cctbx0. 102s Preparing to unpack .../130-libann-cctbx0_1.1.2+doc-9build1_amd64.deb ... 102s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ... 102s Selecting previously unselected package libann-cctbx-dev. 102s Preparing to unpack .../131-libann-cctbx-dev_1.1.2+doc-9build1_amd64.deb ... 102s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ... 102s Selecting previously unselected package libboost1.83-dev:amd64. 102s Preparing to unpack .../132-libboost1.83-dev_1.83.0-3.2ubuntu2_amd64.deb ... 102s Unpacking libboost1.83-dev:amd64 (1.83.0-3.2ubuntu2) ... 104s Selecting previously unselected package libboost-python1.83.0. 104s Preparing to unpack .../133-libboost-python1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 104s Unpacking libboost-python1.83.0 (1.83.0-3.2ubuntu2) ... 104s Selecting previously unselected package libexpat1-dev:amd64. 104s Preparing to unpack .../134-libexpat1-dev_2.6.2-2_amd64.deb ... 104s Unpacking libexpat1-dev:amd64 (2.6.2-2) ... 104s Selecting previously unselected package zlib1g-dev:amd64. 104s Preparing to unpack .../135-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 104s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 104s Selecting previously unselected package libpython3.12-dev:amd64. 104s Preparing to unpack .../136-libpython3.12-dev_3.12.7-3_amd64.deb ... 104s Unpacking libpython3.12-dev:amd64 (3.12.7-3) ... 104s Selecting previously unselected package libpython3-dev:amd64. 104s Preparing to unpack .../137-libpython3-dev_3.12.7-1_amd64.deb ... 104s Unpacking libpython3-dev:amd64 (3.12.7-1) ... 104s Selecting previously unselected package python3.12-dev. 104s Preparing to unpack .../138-python3.12-dev_3.12.7-3_amd64.deb ... 104s Unpacking python3.12-dev (3.12.7-3) ... 104s Selecting previously unselected package libjs-jquery. 104s Preparing to unpack .../139-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 104s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 104s Selecting previously unselected package libjs-underscore. 104s Preparing to unpack .../140-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 104s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 104s Selecting previously unselected package libjs-sphinxdoc. 104s Preparing to unpack .../141-libjs-sphinxdoc_7.4.7-4_all.deb ... 104s Unpacking libjs-sphinxdoc (7.4.7-4) ... 104s Selecting previously unselected package python3-dev. 104s Preparing to unpack .../142-python3-dev_3.12.7-1_amd64.deb ... 104s Unpacking python3-dev (3.12.7-1) ... 104s Selecting previously unselected package libboost-python1.83-dev. 104s Preparing to unpack .../143-libboost-python1.83-dev_1.83.0-3.2ubuntu2_amd64.deb ... 104s Unpacking libboost-python1.83-dev (1.83.0-3.2ubuntu2) ... 104s Selecting previously unselected package libboost-python-dev. 104s Preparing to unpack .../144-libboost-python-dev_1.83.0.2ubuntu1_amd64.deb ... 104s Unpacking libboost-python-dev (1.83.0.2ubuntu1) ... 104s Selecting previously unselected package libccp4-data. 104s Preparing to unpack .../145-libccp4-data_8.0.0-4_all.deb ... 104s Unpacking libccp4-data (8.0.0-4) ... 104s Selecting previously unselected package libccp4c0t64:amd64. 104s Preparing to unpack .../146-libccp4c0t64_8.0.0-4_amd64.deb ... 104s Unpacking libccp4c0t64:amd64 (8.0.0-4) ... 104s Selecting previously unselected package libgfortran5:amd64. 104s Preparing to unpack .../147-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 104s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 104s Selecting previously unselected package libmmdb2-0:amd64. 104s Preparing to unpack .../148-libmmdb2-0_2.0.22-1_amd64.deb ... 104s Unpacking libmmdb2-0:amd64 (2.0.22-1) ... 104s Selecting previously unselected package libccp4f0t64:amd64. 104s Preparing to unpack .../149-libccp4f0t64_8.0.0-4_amd64.deb ... 105s Unpacking libccp4f0t64:amd64 (8.0.0-4) ... 105s Selecting previously unselected package libccp4-dev:amd64. 105s Preparing to unpack .../150-libccp4-dev_8.0.0-4_amd64.deb ... 105s Unpacking libccp4-dev:amd64 (8.0.0-4) ... 105s Selecting previously unselected package libaec0:amd64. 105s Preparing to unpack .../151-libaec0_1.1.3-1_amd64.deb ... 105s Unpacking libaec0:amd64 (1.1.3-1) ... 105s Selecting previously unselected package libsz2:amd64. 105s Preparing to unpack .../152-libsz2_1.1.3-1_amd64.deb ... 105s Unpacking libsz2:amd64 (1.1.3-1) ... 105s Selecting previously unselected package libhdf5-103-1t64:amd64. 105s Preparing to unpack .../153-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 105s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package libcbf1t64:amd64. 105s Preparing to unpack .../154-libcbf1t64_0.9.7+dfsg1-4build1_amd64.deb ... 105s Unpacking libcbf1t64:amd64 (0.9.7+dfsg1-4build1) ... 105s Selecting previously unselected package libcctbx0. 105s Preparing to unpack .../155-libcctbx0_2024.8+ds2+~3.21.1+ds1-3_amd64.deb ... 105s Unpacking libcctbx0 (2024.8+ds2+~3.21.1+ds1-3) ... 105s Selecting previously unselected package libcctbx-dev. 105s Preparing to unpack .../156-libcctbx-dev_2024.8+ds2+~3.21.1+ds1-3_amd64.deb ... 105s Unpacking libcctbx-dev (2024.8+ds2+~3.21.1+ds1-3) ... 105s Selecting previously unselected package python3-pycbf. 105s Preparing to unpack .../157-python3-pycbf_0.9.7+dfsg1-4build1_amd64.deb ... 105s Unpacking python3-pycbf (0.9.7+dfsg1-4build1) ... 105s Selecting previously unselected package libblas3:amd64. 105s Preparing to unpack .../158-libblas3_3.12.0-3build2_amd64.deb ... 105s Unpacking libblas3:amd64 (3.12.0-3build2) ... 105s Selecting previously unselected package liblapack3:amd64. 105s Preparing to unpack .../159-liblapack3_3.12.0-3build2_amd64.deb ... 105s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 105s Selecting previously unselected package python3-numpy. 105s Preparing to unpack .../160-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 105s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 105s Selecting previously unselected package libhdf5-hl-100t64:amd64. 105s Preparing to unpack .../161-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 105s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 105s Selecting previously unselected package liblzf1:amd64. 105s Preparing to unpack .../162-liblzf1_3.6-4_amd64.deb ... 105s Unpacking liblzf1:amd64 (3.6-4) ... 105s Selecting previously unselected package python3-h5py-serial. 105s Preparing to unpack .../163-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 105s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 105s Selecting previously unselected package python3-h5py. 105s Preparing to unpack .../164-python3-h5py_3.11.0-5ubuntu1_all.deb ... 105s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 105s Selecting previously unselected package python3-hdf5plugin. 105s Preparing to unpack .../165-python3-hdf5plugin_4.0.1-3_all.deb ... 105s Unpacking python3-hdf5plugin (4.0.1-3) ... 106s Selecting previously unselected package libjs-jquery-ui. 106s Preparing to unpack .../166-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 106s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 106s Selecting previously unselected package fonts-lyx. 106s Preparing to unpack .../167-fonts-lyx_2.4.2.1-1_all.deb ... 106s Unpacking fonts-lyx (2.4.2.1-1) ... 106s Selecting previously unselected package python-matplotlib-data. 106s Preparing to unpack .../168-python-matplotlib-data_3.8.3-3_all.deb ... 106s Unpacking python-matplotlib-data (3.8.3-3) ... 106s Selecting previously unselected package python3-six. 106s Preparing to unpack .../169-python3-six_1.16.0-7_all.deb ... 106s Unpacking python3-six (1.16.0-7) ... 106s Selecting previously unselected package python3-dateutil. 106s Preparing to unpack .../170-python3-dateutil_2.9.0-2_all.deb ... 106s Unpacking python3-dateutil (2.9.0-2) ... 106s Selecting previously unselected package libimagequant0:amd64. 106s Preparing to unpack .../171-libimagequant0_2.18.0-1build1_amd64.deb ... 106s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 106s Selecting previously unselected package liblcms2-2:amd64. 106s Preparing to unpack .../172-liblcms2-2_2.16-2_amd64.deb ... 106s Unpacking liblcms2-2:amd64 (2.16-2) ... 106s Selecting previously unselected package libopenjp2-7:amd64. 106s Preparing to unpack .../173-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 106s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 106s Selecting previously unselected package libraqm0:amd64. 106s Preparing to unpack .../174-libraqm0_0.10.1-1build1_amd64.deb ... 106s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 106s Selecting previously unselected package libwebpdemux2:amd64. 106s Preparing to unpack .../175-libwebpdemux2_1.4.0-0.1_amd64.deb ... 106s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 106s Selecting previously unselected package libwebpmux3:amd64. 106s Preparing to unpack .../176-libwebpmux3_1.4.0-0.1_amd64.deb ... 106s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 106s Selecting previously unselected package python3-pil:amd64. 106s Preparing to unpack .../177-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 106s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 106s Selecting previously unselected package python3.12-tk. 106s Preparing to unpack .../178-python3.12-tk_3.12.7-3_amd64.deb ... 106s Unpacking python3.12-tk (3.12.7-3) ... 106s Selecting previously unselected package python3.13-tk. 106s Preparing to unpack .../179-python3.13-tk_3.13.0-2_amd64.deb ... 106s Unpacking python3.13-tk (3.13.0-2) ... 106s Selecting previously unselected package python3-tk:amd64. 106s Preparing to unpack .../180-python3-tk_3.12.7-1_amd64.deb ... 106s Unpacking python3-tk:amd64 (3.12.7-1) ... 106s Selecting previously unselected package python3-pil.imagetk:amd64. 106s Preparing to unpack .../181-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 106s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 106s Selecting previously unselected package python3-contourpy. 106s Preparing to unpack .../182-python3-contourpy_1.3.0-2_amd64.deb ... 106s Unpacking python3-contourpy (1.3.0-2) ... 106s Selecting previously unselected package python3-cycler. 106s Preparing to unpack .../183-python3-cycler_0.12.1-1_all.deb ... 106s Unpacking python3-cycler (0.12.1-1) ... 106s Selecting previously unselected package python3-brotli. 106s Preparing to unpack .../184-python3-brotli_1.1.0-2build2_amd64.deb ... 106s Unpacking python3-brotli (1.1.0-2build2) ... 106s Selecting previously unselected package python3-decorator. 106s Preparing to unpack .../185-python3-decorator_5.1.1-5_all.deb ... 106s Unpacking python3-decorator (5.1.1-5) ... 106s Selecting previously unselected package liblbfgsb0:amd64. 106s Preparing to unpack .../186-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 106s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 106s Selecting previously unselected package python3-scipy. 106s Preparing to unpack .../187-python3-scipy_1.13.1-5_amd64.deb ... 106s Unpacking python3-scipy (1.13.1-5) ... 107s Selecting previously unselected package python3-ufolib2. 107s Preparing to unpack .../188-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 107s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 107s Selecting previously unselected package python3-mpmath. 107s Preparing to unpack .../189-python3-mpmath_1.3.0-1_all.deb ... 107s Unpacking python3-mpmath (1.3.0-1) ... 107s Selecting previously unselected package python3-sympy. 107s Preparing to unpack .../190-python3-sympy_1.13.3-1_all.deb ... 107s Unpacking python3-sympy (1.13.3-1) ... 107s Selecting previously unselected package python3-tz. 107s Preparing to unpack .../191-python3-tz_2024.1-2_all.deb ... 107s Unpacking python3-tz (2024.1-2) ... 107s Selecting previously unselected package python3-appdirs. 107s Preparing to unpack .../192-python3-appdirs_1.4.4-4_all.deb ... 107s Unpacking python3-appdirs (1.4.4-4) ... 107s Selecting previously unselected package python3-fs. 107s Preparing to unpack .../193-python3-fs_2.4.16-4_all.deb ... 107s Unpacking python3-fs (2.4.16-4) ... 107s Selecting previously unselected package python3-lxml:amd64. 107s Preparing to unpack .../194-python3-lxml_5.3.0-1_amd64.deb ... 107s Unpacking python3-lxml:amd64 (5.3.0-1) ... 107s Selecting previously unselected package python3-lz4. 107s Preparing to unpack .../195-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 107s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 107s Selecting previously unselected package python3-unicodedata2. 107s Preparing to unpack .../196-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ... 107s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 107s Selecting previously unselected package libpython3.13-stdlib:amd64. 107s Preparing to unpack .../197-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 107s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 108s Selecting previously unselected package python3.13. 108s Preparing to unpack .../198-python3.13_3.13.0-2_amd64.deb ... 108s Unpacking python3.13 (3.13.0-2) ... 108s Selecting previously unselected package python3-all. 108s Preparing to unpack .../199-python3-all_3.12.7-1_amd64.deb ... 108s Unpacking python3-all (3.12.7-1) ... 108s Selecting previously unselected package unicode-data. 108s Preparing to unpack .../200-unicode-data_15.1.0-1_all.deb ... 108s Unpacking unicode-data (15.1.0-1) ... 108s Selecting previously unselected package python3-fonttools. 108s Preparing to unpack .../201-python3-fonttools_4.46.0-1build2_amd64.deb ... 108s Unpacking python3-fonttools (4.46.0-1build2) ... 108s Selecting previously unselected package python3-importlib-resources. 108s Preparing to unpack .../202-python3-importlib-resources_6.4.0-1ubuntu1_all.deb ... 108s Unpacking python3-importlib-resources (6.4.0-1ubuntu1) ... 108s Selecting previously unselected package python3-kiwisolver. 108s Preparing to unpack .../203-python3-kiwisolver_1.4.7-2build1_amd64.deb ... 108s Unpacking python3-kiwisolver (1.4.7-2build1) ... 108s Selecting previously unselected package python3-packaging. 108s Preparing to unpack .../204-python3-packaging_24.1-1_all.deb ... 108s Unpacking python3-packaging (24.1-1) ... 108s Selecting previously unselected package libqhull-r8.0:amd64. 108s Preparing to unpack .../205-libqhull-r8.0_2020.2-6build1_amd64.deb ... 108s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 108s Selecting previously unselected package python3-matplotlib. 108s Preparing to unpack .../206-python3-matplotlib_3.8.3-3_amd64.deb ... 108s Unpacking python3-matplotlib (3.8.3-3) ... 108s Selecting previously unselected package fonts-font-awesome. 108s Preparing to unpack .../207-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 108s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 108s Selecting previously unselected package sphinx-rtd-theme-common. 108s Preparing to unpack .../208-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ... 108s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 108s Selecting previously unselected package python3-mrcfile. 108s Preparing to unpack .../209-python3-mrcfile_1.5.3-3_all.deb ... 108s Unpacking python3-mrcfile (1.5.3-3) ... 108s Selecting previously unselected package python3-natsort. 108s Preparing to unpack .../210-python3-natsort_8.0.2-2_all.deb ... 108s Unpacking python3-natsort (8.0.2-2) ... 108s Selecting previously unselected package python3-pint. 108s Preparing to unpack .../211-python3-pint_0.23-1_all.deb ... 108s Unpacking python3-pint (0.23-1) ... 109s Selecting previously unselected package python3-nxmx. 109s Preparing to unpack .../212-python3-nxmx_0.0.3-3_all.deb ... 109s Unpacking python3-nxmx (0.0.3-3) ... 109s Selecting previously unselected package python3-ordered-set. 109s Preparing to unpack .../213-python3-ordered-set_4.1.0-1_all.deb ... 109s Unpacking python3-ordered-set (4.1.0-1) ... 109s Selecting previously unselected package python3-procrunner. 109s Preparing to unpack .../214-python3-procrunner_2.3.3-2_all.deb ... 109s Unpacking python3-procrunner (2.3.3-2) ... 109s Selecting previously unselected package libopengl0:amd64. 109s Preparing to unpack .../215-libopengl0_1.7.0-1build1_amd64.deb ... 109s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 109s Selecting previously unselected package libglu1-mesa:amd64. 109s Preparing to unpack .../216-libglu1-mesa_9.0.2-1.1build1_amd64.deb ... 109s Unpacking libglu1-mesa:amd64 (9.0.2-1.1build1) ... 109s Selecting previously unselected package python3-opengl. 109s Preparing to unpack .../217-python3-opengl_3.1.7+dfsg-1_all.deb ... 109s Unpacking python3-opengl (3.1.7+dfsg-1) ... 109s Selecting previously unselected package python3-pyqt5.sip. 109s Preparing to unpack .../218-python3-pyqt5.sip_12.15.0-1_amd64.deb ... 109s Unpacking python3-pyqt5.sip (12.15.0-1) ... 109s Selecting previously unselected package libqt5xml5t64:amd64. 109s Preparing to unpack .../219-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 109s Unpacking libqt5xml5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 109s Selecting previously unselected package libqt5designer5:amd64. 109s Preparing to unpack .../220-libqt5designer5_5.15.15-2_amd64.deb ... 109s Unpacking libqt5designer5:amd64 (5.15.15-2) ... 109s Selecting previously unselected package libqt5sql5t64:amd64. 109s Preparing to unpack .../221-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 109s Unpacking libqt5sql5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 109s Selecting previously unselected package libqt5help5:amd64. 109s Preparing to unpack .../222-libqt5help5_5.15.15-2_amd64.deb ... 109s Unpacking libqt5help5:amd64 (5.15.15-2) ... 109s Selecting previously unselected package libqt5test5t64:amd64. 109s Preparing to unpack .../223-libqt5test5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 109s Unpacking libqt5test5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 109s Selecting previously unselected package python3-pyqt5. 109s Preparing to unpack .../224-python3-pyqt5_5.15.11+dfsg-1build1_amd64.deb ... 109s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 109s Selecting previously unselected package libqt5opengl5t64:amd64. 109s Preparing to unpack .../225-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_amd64.deb ... 109s Unpacking libqt5opengl5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 110s Selecting previously unselected package python3-pyqt5.qtopengl. 110s Preparing to unpack .../226-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_amd64.deb ... 110s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 110s Selecting previously unselected package libglew2.2:amd64. 110s Preparing to unpack .../227-libglew2.2_2.2.0-4build1_amd64.deb ... 110s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 110s Selecting previously unselected package libnetcdf19t64:amd64. 110s Preparing to unpack .../228-libnetcdf19t64_1%3a4.9.2-6ubuntu1_amd64.deb ... 110s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 110s Selecting previously unselected package pymol-data. 110s Preparing to unpack .../229-pymol-data_3.0.0+dfsg-1_all.deb ... 110s Unpacking pymol-data (3.0.0+dfsg-1) ... 110s Selecting previously unselected package python3-pymol. 110s Preparing to unpack .../230-python3-pymol_3.0.0+dfsg-1_amd64.deb ... 110s Unpacking python3-pymol (3.0.0+dfsg-1) ... 110s Selecting previously unselected package python3-tqdm. 110s Preparing to unpack .../231-python3-tqdm_4.67.0-1_all.deb ... 110s Unpacking python3-tqdm (4.67.0-1) ... 110s Selecting previously unselected package libpcre2-32-0:amd64. 110s Preparing to unpack .../232-libpcre2-32-0_10.42-4ubuntu3_amd64.deb ... 110s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 110s Selecting previously unselected package libwxbase3.2-1t64:amd64. 110s Preparing to unpack .../233-libwxbase3.2-1t64_3.2.5+dfsg-1_amd64.deb ... 110s Unpacking libwxbase3.2-1t64:amd64 (3.2.5+dfsg-1) ... 110s Selecting previously unselected package libatk1.0-0t64:amd64. 110s Preparing to unpack .../234-libatk1.0-0t64_2.54.0-1_amd64.deb ... 110s Unpacking libatk1.0-0t64:amd64 (2.54.0-1) ... 110s Selecting previously unselected package libxi6:amd64. 110s Preparing to unpack .../235-libxi6_2%3a1.8.2-1_amd64.deb ... 110s Unpacking libxi6:amd64 (2:1.8.2-1) ... 110s Selecting previously unselected package libatspi2.0-0t64:amd64. 110s Preparing to unpack .../236-libatspi2.0-0t64_2.54.0-1_amd64.deb ... 110s Unpacking libatspi2.0-0t64:amd64 (2.54.0-1) ... 110s Selecting previously unselected package libatk-bridge2.0-0t64:amd64. 110s Preparing to unpack .../237-libatk-bridge2.0-0t64_2.54.0-1_amd64.deb ... 110s Unpacking libatk-bridge2.0-0t64:amd64 (2.54.0-1) ... 110s Selecting previously unselected package libpixman-1-0:amd64. 110s Preparing to unpack .../238-libpixman-1-0_0.44.0-3_amd64.deb ... 110s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 110s Selecting previously unselected package libcairo2:amd64. 110s Preparing to unpack .../239-libcairo2_1.18.2-2_amd64.deb ... 110s Unpacking libcairo2:amd64 (1.18.2-2) ... 110s Selecting previously unselected package libcairo-gobject2:amd64. 110s Preparing to unpack .../240-libcairo-gobject2_1.18.2-2_amd64.deb ... 110s Unpacking libcairo-gobject2:amd64 (1.18.2-2) ... 110s Selecting previously unselected package libcolord2:amd64. 110s Preparing to unpack .../241-libcolord2_1.4.7-1build2_amd64.deb ... 110s Unpacking libcolord2:amd64 (1.4.7-1build2) ... 110s Selecting previously unselected package libepoxy0:amd64. 110s Preparing to unpack .../242-libepoxy0_1.5.10-2_amd64.deb ... 110s Unpacking libepoxy0:amd64 (1.5.10-2) ... 110s Selecting previously unselected package libthai-data. 110s Preparing to unpack .../243-libthai-data_0.1.29-2build1_all.deb ... 110s Unpacking libthai-data (0.1.29-2build1) ... 110s Selecting previously unselected package libdatrie1:amd64. 110s Preparing to unpack .../244-libdatrie1_0.2.13-3build1_amd64.deb ... 110s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 110s Selecting previously unselected package libthai0:amd64. 111s Preparing to unpack .../245-libthai0_0.1.29-2build1_amd64.deb ... 111s Unpacking libthai0:amd64 (0.1.29-2build1) ... 111s Selecting previously unselected package libpango-1.0-0:amd64. 111s Preparing to unpack .../246-libpango-1.0-0_1.54.0+ds-3_amd64.deb ... 111s Unpacking libpango-1.0-0:amd64 (1.54.0+ds-3) ... 111s Selecting previously unselected package libpangoft2-1.0-0:amd64. 111s Preparing to unpack .../247-libpangoft2-1.0-0_1.54.0+ds-3_amd64.deb ... 111s Unpacking libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... 111s Selecting previously unselected package libpangocairo-1.0-0:amd64. 111s Preparing to unpack .../248-libpangocairo-1.0-0_1.54.0+ds-3_amd64.deb ... 111s Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... 111s Selecting previously unselected package libwayland-cursor0:amd64. 111s Preparing to unpack .../249-libwayland-cursor0_1.23.0-1_amd64.deb ... 111s Unpacking libwayland-cursor0:amd64 (1.23.0-1) ... 111s Selecting previously unselected package libwayland-egl1:amd64. 111s Preparing to unpack .../250-libwayland-egl1_1.23.0-1_amd64.deb ... 111s Unpacking libwayland-egl1:amd64 (1.23.0-1) ... 111s Selecting previously unselected package libxcomposite1:amd64. 111s Preparing to unpack .../251-libxcomposite1_1%3a0.4.6-1_amd64.deb ... 111s Unpacking libxcomposite1:amd64 (1:0.4.6-1) ... 111s Selecting previously unselected package libxcursor1:amd64. 111s Preparing to unpack .../252-libxcursor1_1%3a1.2.2-1_amd64.deb ... 111s Unpacking libxcursor1:amd64 (1:1.2.2-1) ... 111s Selecting previously unselected package libxdamage1:amd64. 111s Preparing to unpack .../253-libxdamage1_1%3a1.1.6-1build1_amd64.deb ... 111s Unpacking libxdamage1:amd64 (1:1.1.6-1build1) ... 111s Selecting previously unselected package libxinerama1:amd64. 111s Preparing to unpack .../254-libxinerama1_2%3a1.1.4-3build1_amd64.deb ... 111s Unpacking libxinerama1:amd64 (2:1.1.4-3build1) ... 111s Selecting previously unselected package libxrandr2:amd64. 111s Preparing to unpack .../255-libxrandr2_2%3a1.5.4-1_amd64.deb ... 111s Unpacking libxrandr2:amd64 (2:1.5.4-1) ... 111s Selecting previously unselected package libgtk-3-common. 111s Preparing to unpack .../256-libgtk-3-common_3.24.43-3ubuntu2_all.deb ... 111s Unpacking libgtk-3-common (3.24.43-3ubuntu2) ... 111s Selecting previously unselected package libgtk-3-0t64:amd64. 111s Preparing to unpack .../257-libgtk-3-0t64_3.24.43-3ubuntu2_amd64.deb ... 111s Unpacking libgtk-3-0t64:amd64 (3.24.43-3ubuntu2) ... 111s Selecting previously unselected package libnotify4:amd64. 111s Preparing to unpack .../258-libnotify4_0.8.3-1build2_amd64.deb ... 111s Unpacking libnotify4:amd64 (0.8.3-1build2) ... 111s Selecting previously unselected package libxtst6:amd64. 111s Preparing to unpack .../259-libxtst6_2%3a1.2.3-1.1build1_amd64.deb ... 111s Unpacking libxtst6:amd64 (2:1.2.3-1.1build1) ... 111s Selecting previously unselected package libwxgtk3.2-1t64:amd64. 111s Preparing to unpack .../260-libwxgtk3.2-1t64_3.2.5+dfsg-1_amd64.deb ... 111s Unpacking libwxgtk3.2-1t64:amd64 (3.2.5+dfsg-1) ... 111s Selecting previously unselected package libwxgtk-gl3.2-1t64:amd64. 111s Preparing to unpack .../261-libwxgtk-gl3.2-1t64_3.2.5+dfsg-1_amd64.deb ... 111s Unpacking libwxgtk-gl3.2-1t64:amd64 (3.2.5+dfsg-1) ... 111s Selecting previously unselected package python3-wxgtk4.0. 111s Preparing to unpack .../262-python3-wxgtk4.0_4.2.1+dfsg-4_amd64.deb ... 111s Unpacking python3-wxgtk4.0 (4.2.1+dfsg-4) ... 112s Selecting previously unselected package libantlr3c-3.4-0:amd64. 112s Preparing to unpack .../263-libantlr3c-3.4-0_3.4+dfsg-4build2_amd64.deb ... 112s Unpacking libantlr3c-3.4-0:amd64 (3.4+dfsg-4build2) ... 112s Selecting previously unselected package libboost-numpy1.83.0. 112s Preparing to unpack .../264-libboost-numpy1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 112s Unpacking libboost-numpy1.83.0 (1.83.0-3.2ubuntu2) ... 112s Selecting previously unselected package libboost-thread1.83.0:amd64. 112s Preparing to unpack .../265-libboost-thread1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 112s Unpacking libboost-thread1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 112s Selecting previously unselected package libboost-timer1.83.0:amd64. 112s Preparing to unpack .../266-libboost-timer1.83.0_1.83.0-3.2ubuntu2_amd64.deb ... 112s Unpacking libboost-timer1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 112s Selecting previously unselected package libssm2:amd64. 112s Preparing to unpack .../267-libssm2_1.4.0-2build1_amd64.deb ... 112s Unpacking libssm2:amd64 (1.4.0-2build1) ... 112s Selecting previously unselected package python3-cctbx. 112s Preparing to unpack .../268-python3-cctbx_2024.8+ds2+~3.21.1+ds1-3_amd64.deb ... 112s Unpacking python3-cctbx (2024.8+ds2+~3.21.1+ds1-3) ... 113s Selecting previously unselected package python3-pandas-lib:amd64. 113s Preparing to unpack .../269-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 113s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 113s Selecting previously unselected package python3-pandas. 113s Preparing to unpack .../270-python3-pandas_2.2.3+dfsg-5_all.deb ... 113s Unpacking python3-pandas (2.2.3+dfsg-5) ... 113s Selecting previously unselected package python3-psutil. 113s Preparing to unpack .../271-python3-psutil_5.9.8-2build2_amd64.deb ... 113s Unpacking python3-psutil (5.9.8-2build2) ... 113s Selecting previously unselected package python3-fabio. 113s Preparing to unpack .../272-python3-fabio_2024.4.0-2_amd64.deb ... 113s Unpacking python3-fabio (2024.4.0-2) ... 113s Selecting previously unselected package python3-numexpr. 113s Preparing to unpack .../273-python3-numexpr_2.10.1-2_amd64.deb ... 113s Unpacking python3-numexpr (2.10.1-2) ... 113s Selecting previously unselected package python3-mako. 113s Preparing to unpack .../274-python3-mako_1.3.6-1_all.deb ... 113s Unpacking python3-mako (1.3.6-1) ... 113s Selecting previously unselected package ocl-icd-libopencl1:amd64. 113s Preparing to unpack .../275-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 113s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 113s Selecting previously unselected package libpocl2-common. 113s Preparing to unpack .../276-libpocl2-common_6.0-2_all.deb ... 113s Unpacking libpocl2-common (6.0-2) ... 113s Selecting previously unselected package libhwloc15:amd64. 114s Preparing to unpack .../277-libhwloc15_2.11.2-1_amd64.deb ... 114s Unpacking libhwloc15:amd64 (2.11.2-1) ... 114s Selecting previously unselected package libpocl2t64:amd64. 114s Preparing to unpack .../278-libpocl2t64_6.0-2_amd64.deb ... 114s Unpacking libpocl2t64:amd64 (6.0-2) ... 114s Selecting previously unselected package pocl-opencl-icd:amd64. 114s Preparing to unpack .../279-pocl-opencl-icd_6.0-2_amd64.deb ... 114s Unpacking pocl-opencl-icd:amd64 (6.0-2) ... 114s Selecting previously unselected package python3-platformdirs. 114s Preparing to unpack .../280-python3-platformdirs_4.3.6-1_all.deb ... 114s Unpacking python3-platformdirs (4.3.6-1) ... 114s Selecting previously unselected package python3-pytools. 114s Preparing to unpack .../281-python3-pytools_2024.1.14-1_all.deb ... 114s Unpacking python3-pytools (2024.1.14-1) ... 114s Selecting previously unselected package python3-pyopencl. 114s Preparing to unpack .../282-python3-pyopencl_2024.1-1_amd64.deb ... 114s Unpacking python3-pyopencl (2024.1-1) ... 114s Selecting previously unselected package libqt5svg5:amd64. 114s Preparing to unpack .../283-libqt5svg5_5.15.15-2_amd64.deb ... 114s Unpacking libqt5svg5:amd64 (5.15.15-2) ... 114s Selecting previously unselected package python3-pyqt5.qtsvg. 114s Preparing to unpack .../284-python3-pyqt5.qtsvg_5.15.11+dfsg-1build1_amd64.deb ... 114s Unpacking python3-pyqt5.qtsvg (5.15.11+dfsg-1build1) ... 114s Selecting previously unselected package python3-traitlets. 114s Preparing to unpack .../285-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 114s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 114s Selecting previously unselected package python3-comm. 114s Preparing to unpack .../286-python3-comm_0.2.1-1_all.deb ... 114s Unpacking python3-comm (0.2.1-1) ... 114s Selecting previously unselected package libbabeltrace1:amd64. 114s Preparing to unpack .../287-libbabeltrace1_1.5.11-4build1_amd64.deb ... 114s Unpacking libbabeltrace1:amd64 (1.5.11-4build1) ... 114s Selecting previously unselected package libdebuginfod1t64:amd64. 114s Preparing to unpack .../288-libdebuginfod1t64_0.192-4_amd64.deb ... 114s Unpacking libdebuginfod1t64:amd64 (0.192-4) ... 114s Selecting previously unselected package libipt2. 114s Preparing to unpack .../289-libipt2_2.1.1-1_amd64.deb ... 114s Unpacking libipt2 (2.1.1-1) ... 114s Selecting previously unselected package libsource-highlight-common. 114s Preparing to unpack .../290-libsource-highlight-common_3.1.9-4.3build1_all.deb ... 114s Unpacking libsource-highlight-common (3.1.9-4.3build1) ... 114s Selecting previously unselected package libsource-highlight4t64:amd64. 114s Preparing to unpack .../291-libsource-highlight4t64_3.1.9-4.3build1_amd64.deb ... 114s Unpacking libsource-highlight4t64:amd64 (3.1.9-4.3build1) ... 114s Selecting previously unselected package gdb. 114s Preparing to unpack .../292-gdb_15.1-1ubuntu2_amd64.deb ... 114s Unpacking gdb (15.1-1ubuntu2) ... 114s Selecting previously unselected package python3-coverage. 114s Preparing to unpack .../293-python3-coverage_7.4.4+dfsg1-0ubuntu2_amd64.deb ... 114s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 114s Selecting previously unselected package python3-debugpy. 114s Preparing to unpack .../294-python3-debugpy_1.8.8+ds-1ubuntu1_amd64.deb ... 115s Unpacking python3-debugpy (1.8.8+ds-1ubuntu1) ... 115s Selecting previously unselected package python3-parso. 115s Preparing to unpack .../295-python3-parso_0.8.3-1_all.deb ... 115s Unpacking python3-parso (0.8.3-1) ... 115s Selecting previously unselected package python3-typeshed. 115s Preparing to unpack .../296-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 115s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 115s Selecting previously unselected package python3-jedi. 115s Preparing to unpack .../297-python3-jedi_0.19.1+ds1-1_all.deb ... 115s Unpacking python3-jedi (0.19.1+ds1-1) ... 115s Selecting previously unselected package python3-matplotlib-inline. 115s Preparing to unpack .../298-python3-matplotlib-inline_0.1.6-2_all.deb ... 115s Unpacking python3-matplotlib-inline (0.1.6-2) ... 116s Selecting previously unselected package python3-ptyprocess. 116s Preparing to unpack .../299-python3-ptyprocess_0.7.0-6_all.deb ... 116s Unpacking python3-ptyprocess (0.7.0-6) ... 116s Selecting previously unselected package python3-pexpect. 116s Preparing to unpack .../300-python3-pexpect_4.9-2_all.deb ... 116s Unpacking python3-pexpect (4.9-2) ... 116s Selecting previously unselected package python3-wcwidth. 116s Preparing to unpack .../301-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 116s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 116s Selecting previously unselected package python3-prompt-toolkit. 116s Preparing to unpack .../302-python3-prompt-toolkit_3.0.48-1_all.deb ... 116s Unpacking python3-prompt-toolkit (3.0.48-1) ... 116s Selecting previously unselected package python3-asttokens. 116s Preparing to unpack .../303-python3-asttokens_2.4.1-2_all.deb ... 116s Unpacking python3-asttokens (2.4.1-2) ... 116s Selecting previously unselected package python3-executing. 116s Preparing to unpack .../304-python3-executing_2.1.0-0.1_all.deb ... 116s Unpacking python3-executing (2.1.0-0.1) ... 116s Selecting previously unselected package python3-pure-eval. 116s Preparing to unpack .../305-python3-pure-eval_0.2.3-1_all.deb ... 116s Unpacking python3-pure-eval (0.2.3-1) ... 116s Selecting previously unselected package python3-stack-data. 116s Preparing to unpack .../306-python3-stack-data_0.6.3-1_all.deb ... 116s Unpacking python3-stack-data (0.6.3-1) ... 116s Selecting previously unselected package python3-ipython. 116s Preparing to unpack .../307-python3-ipython_8.20.0-1ubuntu1_all.deb ... 116s Unpacking python3-ipython (8.20.0-1ubuntu1) ... 116s Selecting previously unselected package python3-jupyter-core. 116s Preparing to unpack .../308-python3-jupyter-core_5.7.2-4_all.deb ... 116s Unpacking python3-jupyter-core (5.7.2-4) ... 116s Selecting previously unselected package python3-tornado. 116s Preparing to unpack .../309-python3-tornado_6.4.1-3_amd64.deb ... 116s Unpacking python3-tornado (6.4.1-3) ... 116s Selecting previously unselected package python3-py. 116s Preparing to unpack .../310-python3-py_1.11.0-2_all.deb ... 116s Unpacking python3-py (1.11.0-2) ... 116s Selecting previously unselected package libnorm1t64:amd64. 116s Preparing to unpack .../311-libnorm1t64_1.5.9+dfsg-3.1build1_amd64.deb ... 116s Unpacking libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 116s Selecting previously unselected package libpgm-5.3-0t64:amd64. 116s Preparing to unpack .../312-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_amd64.deb ... 116s Unpacking libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 116s Selecting previously unselected package libsodium23:amd64. 116s Preparing to unpack .../313-libsodium23_1.0.18-1build3_amd64.deb ... 116s Unpacking libsodium23:amd64 (1.0.18-1build3) ... 116s Selecting previously unselected package libzmq5:amd64. 116s Preparing to unpack .../314-libzmq5_4.3.5-1build2_amd64.deb ... 116s Unpacking libzmq5:amd64 (4.3.5-1build2) ... 116s Selecting previously unselected package python3-zmq. 116s Preparing to unpack .../315-python3-zmq_24.0.1-5build1_amd64.deb ... 116s Unpacking python3-zmq (24.0.1-5build1) ... 116s Selecting previously unselected package python3-jupyter-client. 116s Preparing to unpack .../316-python3-jupyter-client_8.6.2-3_all.deb ... 116s Unpacking python3-jupyter-client (8.6.2-3) ... 116s Selecting previously unselected package python3-nest-asyncio. 116s Preparing to unpack .../317-python3-nest-asyncio_1.5.4-1_all.deb ... 116s Unpacking python3-nest-asyncio (1.5.4-1) ... 116s Selecting previously unselected package python3-ipykernel. 116s Preparing to unpack .../318-python3-ipykernel_6.29.5-1_all.deb ... 116s Unpacking python3-ipykernel (6.29.5-1) ... 116s Selecting previously unselected package libqt5charts5:amd64. 116s Preparing to unpack .../319-libqt5charts5_5.15.15-2_amd64.deb ... 116s Unpacking libqt5charts5:amd64 (5.15.15-2) ... 116s Selecting previously unselected package python3-pyqt5.qtchart. 116s Preparing to unpack .../320-python3-pyqt5.qtchart_5.15.7+dfsg-1_amd64.deb ... 116s Unpacking python3-pyqt5.qtchart (5.15.7+dfsg-1) ... 117s Selecting previously unselected package libasyncns0:amd64. 117s Preparing to unpack .../321-libasyncns0_0.8-6build4_amd64.deb ... 117s Unpacking libasyncns0:amd64 (0.8-6build4) ... 117s Selecting previously unselected package libogg0:amd64. 117s Preparing to unpack .../322-libogg0_1.3.5-3build1_amd64.deb ... 117s Unpacking libogg0:amd64 (1.3.5-3build1) ... 117s Selecting previously unselected package libflac12t64:amd64. 117s Preparing to unpack .../323-libflac12t64_1.4.3+ds-2.1ubuntu2_amd64.deb ... 117s Unpacking libflac12t64:amd64 (1.4.3+ds-2.1ubuntu2) ... 117s Selecting previously unselected package libmp3lame0:amd64. 117s Preparing to unpack .../324-libmp3lame0_3.100-6build1_amd64.deb ... 117s Unpacking libmp3lame0:amd64 (3.100-6build1) ... 117s Selecting previously unselected package libmpg123-0t64:amd64. 117s Preparing to unpack .../325-libmpg123-0t64_1.32.9-1_amd64.deb ... 117s Unpacking libmpg123-0t64:amd64 (1.32.9-1) ... 117s Selecting previously unselected package libopus0:amd64. 117s Preparing to unpack .../326-libopus0_1.5.2-2_amd64.deb ... 117s Unpacking libopus0:amd64 (1.5.2-2) ... 117s Selecting previously unselected package libvorbis0a:amd64. 117s Preparing to unpack .../327-libvorbis0a_1.3.7-2_amd64.deb ... 117s Unpacking libvorbis0a:amd64 (1.3.7-2) ... 117s Selecting previously unselected package libvorbisenc2:amd64. 117s Preparing to unpack .../328-libvorbisenc2_1.3.7-2_amd64.deb ... 117s Unpacking libvorbisenc2:amd64 (1.3.7-2) ... 117s Selecting previously unselected package libsndfile1:amd64. 117s Preparing to unpack .../329-libsndfile1_1.2.2-1ubuntu5_amd64.deb ... 117s Unpacking libsndfile1:amd64 (1.2.2-1ubuntu5) ... 117s Selecting previously unselected package libpulse0:amd64. 117s Preparing to unpack .../330-libpulse0_1%3a16.1+dfsg1-5.1ubuntu1_amd64.deb ... 117s Unpacking libpulse0:amd64 (1:16.1+dfsg1-5.1ubuntu1) ... 117s Selecting previously unselected package libqt5multimedia5:amd64. 117s Preparing to unpack .../331-libqt5multimedia5_5.15.15-2_amd64.deb ... 117s Unpacking libqt5multimedia5:amd64 (5.15.15-2) ... 117s Selecting previously unselected package libqt5multimediawidgets5:amd64. 117s Preparing to unpack .../332-libqt5multimediawidgets5_5.15.15-2_amd64.deb ... 117s Unpacking libqt5multimediawidgets5:amd64 (5.15.15-2) ... 117s Selecting previously unselected package python3-pyqt5.qtmultimedia. 117s Preparing to unpack .../333-python3-pyqt5.qtmultimedia_5.15.11+dfsg-1build1_amd64.deb ... 117s Unpacking python3-pyqt5.qtmultimedia (5.15.11+dfsg-1build1) ... 117s Selecting previously unselected package libqt5positioningquick5:amd64. 117s Preparing to unpack .../334-libqt5positioningquick5_5.15.15+dfsg-2_amd64.deb ... 117s Unpacking libqt5positioningquick5:amd64 (5.15.15+dfsg-2) ... 117s Selecting previously unselected package libqt5location5:amd64. 117s Preparing to unpack .../335-libqt5location5_5.15.15+dfsg-2_amd64.deb ... 117s Unpacking libqt5location5:amd64 (5.15.15+dfsg-2) ... 117s Selecting previously unselected package python3-pyqt5.qtpositioning. 117s Preparing to unpack .../336-python3-pyqt5.qtpositioning_5.15.11+dfsg-1build1_amd64.deb ... 117s Unpacking python3-pyqt5.qtpositioning (5.15.11+dfsg-1build1) ... 117s Selecting previously unselected package libqt5quickwidgets5:amd64. 117s Preparing to unpack .../337-libqt5quickwidgets5_5.15.15+dfsg-3_amd64.deb ... 117s Unpacking libqt5quickwidgets5:amd64 (5.15.15+dfsg-3) ... 117s Selecting previously unselected package python3-pyqt5.qtquick. 117s Preparing to unpack .../338-python3-pyqt5.qtquick_5.15.11+dfsg-1build1_amd64.deb ... 117s Unpacking python3-pyqt5.qtquick (5.15.11+dfsg-1build1) ... 117s Selecting previously unselected package libqt5remoteobjects5:amd64. 117s Preparing to unpack .../339-libqt5remoteobjects5_5.15.15-2_amd64.deb ... 117s Unpacking libqt5remoteobjects5:amd64 (5.15.15-2) ... 117s Selecting previously unselected package python3-pyqt5.qtremoteobjects. 117s Preparing to unpack .../340-python3-pyqt5.qtremoteobjects_5.15.11+dfsg-1build1_amd64.deb ... 117s Unpacking python3-pyqt5.qtremoteobjects (5.15.11+dfsg-1build1) ... 117s Selecting previously unselected package python3-pyqt5.qtsensors. 117s Preparing to unpack .../341-python3-pyqt5.qtsensors_5.15.11+dfsg-1build1_amd64.deb ... 117s Unpacking python3-pyqt5.qtsensors (5.15.11+dfsg-1build1) ... 117s Selecting previously unselected package libqt5serialport5:amd64. 117s Preparing to unpack .../342-libqt5serialport5_5.15.15-2_amd64.deb ... 117s Unpacking libqt5serialport5:amd64 (5.15.15-2) ... 118s Selecting previously unselected package python3-pyqt5.qtserialport. 118s Preparing to unpack .../343-python3-pyqt5.qtserialport_5.15.11+dfsg-1build1_amd64.deb ... 118s Unpacking python3-pyqt5.qtserialport (5.15.11+dfsg-1build1) ... 118s Selecting previously unselected package python3-pyqt5.qtsql. 118s Preparing to unpack .../344-python3-pyqt5.qtsql_5.15.11+dfsg-1build1_amd64.deb ... 118s Unpacking python3-pyqt5.qtsql (5.15.11+dfsg-1build1) ... 118s Selecting previously unselected package libqt5texttospeech5:amd64. 118s Preparing to unpack .../345-libqt5texttospeech5_5.15.15-2_amd64.deb ... 118s Unpacking libqt5texttospeech5:amd64 (5.15.15-2) ... 118s Selecting previously unselected package python3-pyqt5.qttexttospeech. 118s Preparing to unpack .../346-python3-pyqt5.qttexttospeech_5.15.11+dfsg-1build1_amd64.deb ... 118s Unpacking python3-pyqt5.qttexttospeech (5.15.11+dfsg-1build1) ... 118s Selecting previously unselected package python3-pyqt5.qtwebchannel. 118s Preparing to unpack .../347-python3-pyqt5.qtwebchannel_5.15.11+dfsg-1build1_amd64.deb ... 118s Unpacking python3-pyqt5.qtwebchannel (5.15.11+dfsg-1build1) ... 118s Selecting previously unselected package python3-pyqt5.qtwebkit. 118s Preparing to unpack .../348-python3-pyqt5.qtwebkit_5.15.11+dfsg-1build1_amd64.deb ... 118s Unpacking python3-pyqt5.qtwebkit (5.15.11+dfsg-1build1) ... 118s Selecting previously unselected package libqt5websockets5:amd64. 118s Preparing to unpack .../349-libqt5websockets5_5.15.15-2_amd64.deb ... 118s Unpacking libqt5websockets5:amd64 (5.15.15-2) ... 118s Selecting previously unselected package python3-pyqt5.qtwebsockets. 118s Preparing to unpack .../350-python3-pyqt5.qtwebsockets_5.15.11+dfsg-1build1_amd64.deb ... 118s Unpacking python3-pyqt5.qtwebsockets (5.15.11+dfsg-1build1) ... 118s Selecting previously unselected package libqt5xmlpatterns5:amd64. 118s Preparing to unpack .../351-libqt5xmlpatterns5_5.15.15-2_amd64.deb ... 118s Unpacking libqt5xmlpatterns5:amd64 (5.15.15-2) ... 118s Selecting previously unselected package python3-pyqt5.qtxmlpatterns. 118s Preparing to unpack .../352-python3-pyqt5.qtxmlpatterns_5.15.11+dfsg-1build1_amd64.deb ... 118s Unpacking python3-pyqt5.qtxmlpatterns (5.15.11+dfsg-1build1) ... 118s Selecting previously unselected package python3-qtpy. 118s Preparing to unpack .../353-python3-qtpy_2.4.1-2_all.deb ... 118s Unpacking python3-qtpy (2.4.1-2) ... 118s Selecting previously unselected package python3-qtconsole. 118s Preparing to unpack .../354-python3-qtconsole_5.5.2-1_all.deb ... 118s Unpacking python3-qtconsole (5.5.2-1) ... 118s Selecting previously unselected package python3-pooch. 118s Preparing to unpack .../355-python3-pooch_1.8.2-1_all.deb ... 118s Unpacking python3-pooch (1.8.2-1) ... 118s Selecting previously unselected package python3-silx. 118s Preparing to unpack .../356-python3-silx_2.1.2+dfsg-1_amd64.deb ... 118s Unpacking python3-silx (2.1.2+dfsg-1) ... 118s Selecting previously unselected package python3-pyfai. 118s Preparing to unpack .../357-python3-pyfai_2024.05-3_amd64.deb ... 118s Unpacking python3-pyfai (2024.05-3) ... 119s Selecting previously unselected package python3-joblib. 119s Preparing to unpack .../358-python3-joblib_1.3.2-5_all.deb ... 119s Unpacking python3-joblib (1.3.2-5) ... 119s Selecting previously unselected package python3-threadpoolctl. 119s Preparing to unpack .../359-python3-threadpoolctl_3.1.0-1_all.deb ... 119s Unpacking python3-threadpoolctl (3.1.0-1) ... 119s Selecting previously unselected package python3-sklearn-lib:amd64. 119s Preparing to unpack .../360-python3-sklearn-lib_1.4.2+dfsg-6_amd64.deb ... 119s Unpacking python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 119s Selecting previously unselected package python3-sklearn. 119s Preparing to unpack .../361-python3-sklearn_1.4.2+dfsg-6_all.deb ... 119s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 119s Selecting previously unselected package python3-tabulate. 119s Preparing to unpack .../362-python3-tabulate_0.9.0-1_all.deb ... 119s Unpacking python3-tabulate (0.9.0-1) ... 119s Selecting previously unselected package fonts-glyphicons-halflings. 119s Preparing to unpack .../363-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 119s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 119s Selecting previously unselected package libjs-bootstrap. 119s Preparing to unpack .../364-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 119s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 119s Selecting previously unselected package fonts-katex. 119s Preparing to unpack .../365-fonts-katex_0.16.10+~cs6.1.0-2_all.deb ... 119s Unpacking fonts-katex (0.16.10+~cs6.1.0-2) ... 119s Selecting previously unselected package libjs-katex. 119s Preparing to unpack .../366-libjs-katex_0.16.10+~cs6.1.0-2_all.deb ... 119s Unpacking libjs-katex (0.16.10+~cs6.1.0-2) ... 119s Selecting previously unselected package fonts-mathjax. 119s Preparing to unpack .../367-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 119s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 119s Selecting previously unselected package libjs-mathjax. 119s Preparing to unpack .../368-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 119s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 120s Selecting previously unselected package python3-fastjsonschema. 120s Preparing to unpack .../369-python3-fastjsonschema_2.20.0-1_all.deb ... 120s Unpacking python3-fastjsonschema (2.20.0-1) ... 120s Selecting previously unselected package python3-nbformat. 120s Preparing to unpack .../370-python3-nbformat_5.9.1-1_all.deb ... 120s Unpacking python3-nbformat (5.9.1-1) ... 120s Selecting previously unselected package python3-tenacity. 120s Preparing to unpack .../371-python3-tenacity_8.5.0-0ubuntu1_all.deb ... 120s Unpacking python3-tenacity (8.5.0-0ubuntu1) ... 120s Selecting previously unselected package python3-plotly. 120s Preparing to unpack .../372-python3-plotly_5.20.0+dfsg-1_all.deb ... 120s Unpacking python3-plotly (5.20.0+dfsg-1) ... 122s Selecting previously unselected package python3-dials. 122s Preparing to unpack .../373-python3-dials_3.17.0+dfsg3-4_amd64.deb ... 122s Unpacking python3-dials (3.17.0+dfsg3-4) ... 122s Selecting previously unselected package dials. 122s Preparing to unpack .../374-dials_3.17.0+dfsg3-4_amd64.deb ... 122s Unpacking dials (3.17.0+dfsg3-4) ... 122s Selecting previously unselected package python3-iniconfig. 122s Preparing to unpack .../375-python3-iniconfig_1.1.1-2_all.deb ... 122s Unpacking python3-iniconfig (1.1.1-2) ... 122s Selecting previously unselected package python3-pluggy. 122s Preparing to unpack .../376-python3-pluggy_1.5.0-1_all.deb ... 122s Unpacking python3-pluggy (1.5.0-1) ... 122s Selecting previously unselected package python3-pytest. 122s Preparing to unpack .../377-python3-pytest_8.3.3-1_all.deb ... 122s Unpacking python3-pytest (8.3.3-1) ... 122s Selecting previously unselected package python3-dials-data. 122s Preparing to unpack .../378-python3-dials-data_2.4.0-2_all.deb ... 122s Unpacking python3-dials-data (2.4.0-2) ... 122s Selecting previously unselected package python3-execnet. 122s Preparing to unpack .../379-python3-execnet_2.1.1-1_all.deb ... 122s Unpacking python3-execnet (2.1.1-1) ... 122s Selecting previously unselected package python3-pytest-mock. 122s Preparing to unpack .../380-python3-pytest-mock_3.14.0-2_all.deb ... 122s Unpacking python3-pytest-mock (3.14.0-2) ... 122s Selecting previously unselected package python3-pytest-xdist. 122s Preparing to unpack .../381-python3-pytest-xdist_3.6.1-1_all.deb ... 122s Unpacking python3-pytest-xdist (3.6.1-1) ... 122s Selecting previously unselected package autopkgtest-satdep. 122s Preparing to unpack .../382-1-autopkgtest-satdep.deb ... 122s Unpacking autopkgtest-satdep (0) ... 122s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 122s Setting up libboost-python1.83.0 (1.83.0-3.2ubuntu2) ... 122s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 122s Setting up liblcms2-2:amd64 (2.16-2) ... 122s Setting up python3-iniconfig (1.1.1-2) ... 122s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 122s Setting up python3-tornado (6.4.1-3) ... 123s Setting up libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 123s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 123s Setting up libwayland-server0:amd64 (1.23.0-1) ... 123s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 123s Setting up libpciaccess0:amd64 (0.17-3build1) ... 123s Setting up python3-pure-eval (0.2.3-1) ... 123s Setting up libdouble-conversion3:amd64 (3.3.0-1build1) ... 123s Setting up fonts-lato (2.015-1) ... 123s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 123s Setting up libsodium23:amd64 (1.0.18-1build3) ... 123s Setting up libxdamage1:amd64 (1:1.1.6-1build1) ... 123s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 123s Setting up libogg0:amd64 (1.3.5-3build1) ... 123s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 123s Setting up libantlr3c-3.4-0:amd64 (3.4+dfsg-4build2) ... 123s Setting up hicolor-icon-theme (0.18-1) ... 123s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 123s Setting up libxi6:amd64 (2:1.8.2-1) ... 123s Setting up libxcb-xinput0:amd64 (1.17.0-2) ... 123s Setting up libwoff1:amd64 (1.0.2-2build1) ... 123s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 123s Setting up python3-py (1.11.0-2) ... 123s Setting up libhyphen0:amd64 (2.8.8-7build3) ... 123s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 123s Setting up libdebuginfod-common (0.192-4) ... 123s Setting up python3-joblib (1.3.2-5) ... 124s Setting up python3-parso (0.8.3-1) ... 124s Setting up python3-importlib-resources (6.4.0-1ubuntu1) ... 124s Setting up libmmdb2-0:amd64 (2.0.22-1) ... 124s Setting up libboost-timer1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 124s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 124s Setting up libxcb-render0:amd64 (1.17.0-2) ... 124s Setting up python3-asttokens (2.4.1-2) ... 125s Setting up libdrm-radeon1:amd64 (2.4.123-1) ... 125s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 125s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 125s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 125s Setting up fonts-lyx (2.4.2.1-1) ... 125s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 125s Setting up python3-tenacity (8.5.0-0ubuntu1) ... 125s Setting up python3-tqdm (4.67.0-1) ... 125s Setting up libdrm-intel1:amd64 (2.4.123-1) ... 125s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 125s Setting up python3-threadpoolctl (3.1.0-1) ... 125s Setting up libxcb-keysyms1:amd64 (0.4.0-1build4) ... 125s Setting up libxcb-shape0:amd64 (1.17.0-2) ... 125s Setting up x11-common (1:7.7+23ubuntu3) ... 125s Setting up libdeflate0:amd64 (1.22-1) ... 125s Setting up libboost-thread1.83.0:amd64 (1.83.0-3.2ubuntu2) ... 125s Setting up python3-tabulate (0.9.0-1) ... 126s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 126s Setting up libxcb-render-util0:amd64 (0.3.9-1build4) ... 126s Setting up python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 126s Setting up python3-ordered-set (4.1.0-1) ... 126s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 126s Setting up libxcb-icccm4:amd64 (0.4.2-1) ... 126s Setting up libccp4-data (8.0.0-4) ... 126s Setting up libmpg123-0t64:amd64 (1.32.9-1) ... 126s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 126s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 126s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 126s Setting up libaec0:amd64 (1.1.3-1) ... 126s Setting up libcolord2:amd64 (1.4.7-1build2) ... 126s Setting up python3-platformdirs (4.3.6-1) ... 126s Setting up python3-psutil (5.9.8-2build2) ... 127s Setting up libsource-highlight-common (3.1.9-4.3build1) ... 127s Setting up libopengl0:amd64 (1.7.0-1build1) ... 127s Setting up python3-tz (2024.1-2) ... 127s Setting up python3-natsort (8.0.2-2) ... 127s Setting up libxcb-util1:amd64 (0.4.0-1build3) ... 127s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 127s Setting up liborc-0.4-0t64:amd64 (1:0.4.40-1) ... 127s Setting up libxcb-xkb1:amd64 (1.17.0-2) ... 127s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 127s Setting up libxcb-present0:amd64 (1.17.0-2) ... 127s Setting up libdconf1:amd64 (0.40.0-4build2) ... 127s Setting up unicode-data (15.1.0-1) ... 127s Setting up python3-six (1.16.0-7) ... 127s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 127s Setting up python3-pint (0.23-1) ... 128s Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 128s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 128s Setting up python3-decorator (5.1.1-5) ... 128s Setting up libqt5texttospeech5:amd64 (5.15.15-2) ... 128s Setting up libboost-numpy1.83.0 (1.83.0-3.2ubuntu2) ... 128s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 128s Setting up libblas3:amd64 (3.12.0-3build2) ... 128s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 128s Setting up python3-packaging (24.1-1) ... 128s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ... 128s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 128s Setting up libexpat1-dev:amd64 (2.6.2-2) ... 128s Setting up python3-wcwidth (0.2.13+dfsg1-1) ... 128s Setting up fonts-katex (0.16.10+~cs6.1.0-2) ... 128s Setting up libclang1-17t64 (1:17.0.6-18) ... 128s Setting up libann-cctbx0 (1.1.2+doc-9build1) ... 128s Setting up libepoxy0:amd64 (1.5.10-2) ... 128s Setting up python3-typeshed (0.0~git20231111.6764465-3) ... 128s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 128s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 128s Setting up python3-executing (2.1.0-0.1) ... 128s Setting up python3-pooch (1.8.2-1) ... 128s Setting up python3-nest-asyncio (1.5.4-1) ... 129s Setting up python3-brotli (1.1.0-2build2) ... 129s Setting up libavahi-common-data:amd64 (0.8-13ubuntu6) ... 129s Setting up libatspi2.0-0t64:amd64 (2.54.0-1) ... 129s Setting up liblzf1:amd64 (3.6-4) ... 129s Setting up libpocl2-common (6.0-2) ... 129s Setting up libopus0:amd64 (1.5.2-2) ... 129s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 129s Setting up python3-cycler (0.12.1-1) ... 129s Setting up libxinerama1:amd64 (2:1.1.4-3build1) ... 129s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 129s Setting up pymol-data (3.0.0+dfsg-1) ... 129s Setting up libxkbcommon-x11-0:amd64 (1.6.0-1build1) ... 129s Setting up fonts-dejavu-mono (2.37-8) ... 129s Setting up python3-kiwisolver (1.4.7-2build1) ... 129s Setting up libhwloc15:amd64 (2.11.2-1) ... 129s Setting up libvorbis0a:amd64 (1.3.7-2) ... 129s Setting up libxrandr2:amd64 (2:1.5.4-1) ... 129s Setting up libtcl8.6:amd64 (8.6.15+dfsg-2) ... 129s Setting up libipt2 (2.1.1-1) ... 129s Setting up fonts-dejavu-core (2.37-8) ... 129s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 129s Setting up libgc1:amd64 (1:8.2.6-2) ... 129s Setting up libbabeltrace1:amd64 (1.5.11-4build1) ... 129s Setting up libglapi-mesa:amd64 (24.2.3-1ubuntu1) ... 129s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 129s Setting up libvulkan1:amd64 (1.3.296.0-1) ... 129s Setting up python3-pluggy (1.5.0-1) ... 129s Setting up libwebp7:amd64 (1.4.0-0.1) ... 129s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 129s Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... 129s Setting up python3-fastjsonschema (2.20.0-1) ... 129s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 129s Setting up python3-pyqt5.sip (12.15.0-1) ... 129s Setting up libmtdev1t64:amd64 (1.1.6-1.2) ... 129s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 129s Setting up libclang-common-17-dev:amd64 (1:17.0.6-18) ... 129s Setting up libasyncns0:amd64 (0.8-6build4) ... 129s Setting up libxshmfence1:amd64 (1.3-1build5) ... 129s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 129s Setting up at-spi2-common (2.54.0-1) ... 129s Setting up libccp4c0t64:amd64 (8.0.0-4) ... 129s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 129s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 130s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 130s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 130s Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 130s Setting up libmd4c0:amd64 (0.5.2-2) ... 130s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 130s Setting up python3.13-minimal (3.13.0-2) ... 130s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 130s Setting up libthai-data (0.1.29-2build1) ... 130s Setting up python3-dateutil (2.9.0-2) ... 131s Setting up libjs-katex (0.16.10+~cs6.1.0-2) ... 131s Setting up libglu1-mesa:amd64 (9.0.2-1.1build1) ... 131s Setting up libflac12t64:amd64 (1.4.3+ds-2.1ubuntu2) ... 131s Setting up libwayland-egl1:amd64 (1.23.0-1) ... 131s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 131s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 131s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 131s Setting up libwxbase3.2-1t64:amd64 (3.2.5+dfsg-1) ... 131s Setting up python3-mpmath (1.3.0-1) ... 131s Setting up python3-execnet (2.1.1-1) ... 132s Setting up python-matplotlib-data (3.8.3-3) ... 132s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 132s Setting up python3-appdirs (1.4.4-4) ... 132s Setting up libxcomposite1:amd64 (1:0.4.6-1) ... 132s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 132s Setting up python3-stack-data (0.6.3-1) ... 132s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 132s Setting up sphinx-rtd-theme-common (3.0.1+dfsg-1) ... 132s Setting up python3-procrunner (2.3.3-2) ... 132s Setting up python3-jupyter-core (5.7.2-4) ... 132s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 132s Setting up libgstreamer1.0-0:amd64 (1.24.9-1) ... 132s Setcap worked! gst-ptp-helper is not suid! 132s Setting up libmp3lame0:amd64 (3.100-6build1) ... 132s Setting up libsz2:amd64 (1.1.3-1) ... 132s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 132s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 133s Setting up python3-mako (1.3.6-1) ... 133s Setting up libvorbisenc2:amd64 (1.3.7-2) ... 133s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 133s Setting up libann-cctbx-dev (1.1.2+doc-9build1) ... 133s Setting up python3-ptyprocess (0.7.0-6) ... 133s Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ... 133s Setting up libwacom-common (2.13.0-1) ... 133s Setting up libwayland-client0:amd64 (1.23.0-1) ... 133s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 133s Setting up python3-prompt-toolkit (3.0.48-1) ... 133s Setting up python3-sympy (1.13.3-1) ... 143s Setting up libdebuginfod1t64:amd64 (0.192-4) ... 143s Setting up libice6:amd64 (2:1.1.1-1) ... 143s Setting up mesa-libgallium:amd64 (24.2.3-1ubuntu1) ... 143s Setting up liblapack3:amd64 (3.12.0-3build2) ... 143s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 143s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 143s Setting up llvm-17-linker-tools (1:17.0.6-18) ... 143s Setting up libssm2:amd64 (1.4.0-2build1) ... 143s Setting up libatk1.0-0t64:amd64 (2.54.0-1) ... 143s Setting up libzmq5:amd64 (4.3.5-1build2) ... 143s Setting up python3-jedi (0.19.1+ds1-1) ... 143s Setting up libgbm1:amd64 (24.2.3-1ubuntu1) ... 143s Setting up python3.13 (3.13.0-2) ... 144s Setting up libwacom9:amd64 (2.13.0-1) ... 144s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 144s Setting up python3-pytest (8.3.3-1) ... 144s Setting up libxtst6:amd64 (2:1.2.3-1.1build1) ... 144s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 144s Setting up libxcursor1:amd64 (1:1.2.2-1) ... 144s Setting up libqt5positioning5:amd64 (5.15.15+dfsg-2) ... 144s Setting up libgl1-mesa-dri:amd64 (24.2.3-1ubuntu1) ... 144s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 144s Setting up libavahi-common3:amd64 (0.8-13ubuntu6) ... 144s Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 144s Setting up python3-all (3.12.7-1) ... 144s Setting up libgstreamer-plugins-base1.0-0:amd64 (1.24.9-1) ... 144s Setting up libobjc4:amd64 (14.2.0-8ubuntu1) ... 144s Setting up dconf-service (0.40.0-4build2) ... 144s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 144s Setting up libsource-highlight4t64:amd64 (3.1.9-4.3build1) ... 144s Setting up libqt5serialport5:amd64 (5.15.15-2) ... 144s Setting up python3-nbformat (5.9.1-1) ... 145s Setting up libqt5test5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 145s Setting up libccp4f0t64:amd64 (8.0.0-4) ... 145s Setting up libinput-bin (1.26.2-1) ... 145s Setting up python3-matplotlib-inline (0.1.6-2) ... 145s Setting up python3-comm (0.2.1-1) ... 145s Setting up python3-fs (2.4.16-4) ... 145s Setting up libclang-cpp17t64 (1:17.0.6-18) ... 145s Setting up libthai0:amd64 (0.1.29-2build1) ... 145s Setting up libqt5websockets5:amd64 (5.15.15-2) ... 145s Setting up libegl-mesa0:amd64 (24.2.3-1ubuntu1) ... 145s Setting up gdb (15.1-1ubuntu2) ... 145s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 145s Setting up libqt5qml5:amd64 (5.15.15+dfsg-3) ... 145s Setting up python3-pexpect (4.9-2) ... 145s Setting up python3-zmq (24.0.1-5build1) ... 146s Setting up libraqm0:amd64 (0.10.1-1build1) ... 146s Setting up python3.12-dev (3.12.7-3) ... 146s Setting up libqt5webchannel5:amd64 (5.15.15-2) ... 146s Setting up python3-plotly (5.20.0+dfsg-1) ... 156s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 159s Setting up libjs-sphinxdoc (7.4.7-4) ... 159s Setting up python3-pytest-mock (3.14.0-2) ... 159s Setting up python3-lxml:amd64 (5.3.0-1) ... 159s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 159s Setting up libwayland-cursor0:amd64 (1.23.0-1) ... 159s Setting up libegl1:amd64 (1.7.0-1build1) ... 159s Setting up python3-jupyter-client (8.6.2-3) ... 160s Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-1) ... 160s Setting up python3-contourpy (1.3.0-2) ... 160s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 160s Setting up libsndfile1:amd64 (1.2.2-1ubuntu5) ... 160s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 160s Setting up libqt5sensors5:amd64 (5.15.15-2) ... 160s Setting up python3-dials-data (2.4.0-2) ... 160s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 160s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 160s Setting up libsm6:amd64 (2:1.2.4-1) ... 160s Setting up libavahi-client3:amd64 (0.8-13ubuntu6) ... 160s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 160s Setting up python3-mrcfile (1.5.3-3) ... 160s Setting up libatk-bridge2.0-0t64:amd64 (2.54.0-1) ... 160s Setting up libinput10:amd64 (1.26.2-1) ... 160s Setting up gtk-update-icon-cache (4.16.5+ds-1) ... 160s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 160s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 162s Regenerating fonts cache... done. 162s Setting up libnetcdf19t64:amd64 (1:4.9.2-6ubuntu1) ... 162s Setting up libxft2:amd64 (2.3.6-1build1) ... 162s Setting up libboost1.83-dev:amd64 (1.83.0-3.2ubuntu2) ... 162s Setting up libqt5qmlmodels5:amd64 (5.15.15+dfsg-3) ... 162s Setting up libglx-mesa0:amd64 (24.2.3-1ubuntu1) ... 162s Setting up python3-scipy (1.13.1-5) ... 167s Setting up libpython3-dev:amd64 (3.12.7-1) ... 167s Setting up libcbf1t64:amd64 (0.9.7+dfsg1-4build1) ... 167s Setting up python3-pytest-xdist (3.6.1-1) ... 167s Setting up libglx0:amd64 (1.7.0-1build1) ... 167s Setting up dconf-gsettings-backend:amd64 (0.40.0-4build2) ... 167s Setting up libccp4-dev:amd64 (8.0.0-4) ... 167s Setting up libpulse0:amd64 (1:16.1+dfsg1-5.1ubuntu1) ... 167s Setting up libqt5xmlpatterns5:amd64 (5.15.15-2) ... 167s Setting up libqt5remoteobjects5:amd64 (5.15.15-2) ... 167s Setting up libtk8.6:amd64 (8.6.15-1) ... 167s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 167s Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ... 167s Setting up python3.12-tk (3.12.7-3) ... 167s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-6) ... 167s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 168s Setting up libobjc-14-dev:amd64 (14.2.0-8ubuntu1) ... 168s Setting up python3-debugpy (1.8.8+ds-1ubuntu1) ... 169s Setting up libcairo2:amd64 (1.18.2-2) ... 169s Setting up python3.13-tk (3.13.0-2) ... 169s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 169s Setting up libgl1:amd64 (1.7.0-1build1) ... 169s Setting up python3-pandas (2.2.3+dfsg-5) ... 176s Setting up python3-ipython (8.20.0-1ubuntu1) ... 177s Setting up libnotify4:amd64 (0.8.3-1build2) ... 177s Setting up python3-dev (3.12.7-1) ... 177s Setting up libboost-python1.83-dev (1.83.0-3.2ubuntu2) ... 177s Setting up python3-pycbf (0.9.7+dfsg1-4build1) ... 177s Setting up python3-ipykernel (6.29.5-1) ... 178s Setting up python3-h5py (3.11.0-5ubuntu1) ... 178s Setting up python3-sklearn (1.4.2+dfsg-6) ... 181s Setting up python3-numexpr (2.10.1-2) ... 181s Setting up python3-pytools (2024.1.14-1) ... 181s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 181s Setting up python3-hdf5plugin (4.0.1-3) ... 181s Setting up libcairo-gobject2:amd64 (1.18.2-2) ... 181s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ... 181s Setting up python3-nxmx (0.0.3-3) ... 181s Setting up libcups2t64:amd64 (2.4.10-1ubuntu2) ... 181s Setting up libgtk-3-common (3.24.43-3ubuntu2) ... 181s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ... 181s Setting up libcctbx0 (2024.8+ds2+~3.21.1+ds1-3) ... 181s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 181s Setting up blt (2.5.3+dfsg-7build1) ... 181s Setting up clang-17 (1:17.0.6-18) ... 181s Setting up python3-tk:amd64 (3.12.7-1) ... 181s Setting up python3-opengl (3.1.7+dfsg-1) ... 182s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 182s '''OpenGL extension AMD.vertex_shader_tessellator 183s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 183s '''OpenGL extension AMD.vertex_shader_tessellator 184s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 184s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 184s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 184s Setting up libqt5quick5:amd64 (5.15.15+dfsg-3) ... 184s Setting up libcctbx-dev (2024.8+ds2+~3.21.1+ds1-3) ... 184s Setting up libqt5positioningquick5:amd64 (5.15.15+dfsg-2) ... 184s Setting up libqt5location5:amd64 (5.15.15+dfsg-2) ... 184s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 184s Setting up libpocl2t64:amd64 (6.0-2) ... 184s Setting up libqt5svg5:amd64 (5.15.15-2) ... 184s Setting up libqt5help5:amd64 (5.15.15-2) ... 184s Setting up libqt5charts5:amd64 (5.15.15-2) ... 184s Setting up libqt5multimedia5:amd64 (5.15.15-2) ... 184s Setting up libqt5quickwidgets5:amd64 (5.15.15+dfsg-3) ... 184s Setting up pocl-opencl-icd:amd64 (6.0-2) ... 184s Setting up libqt5multimediawidgets5:amd64 (5.15.15-2) ... 184s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 184s Setting up python3-pyopencl (2024.1-1) ... 184s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-1ubuntu1) ... 184s Setting up libqt5designer5:amd64 (5.15.15-2) ... 184s Setting up libqt5webkit5:amd64 (5.212.0~alpha4-41) ... 184s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtpositioning (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtsvg (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qttexttospeech (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtsql (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtmultimedia (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtchart (5.15.7+dfsg-1) ... 185s Setting up python3-pyqt5.qtxmlpatterns (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtsensors (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtwebsockets (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtserialport (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtremoteobjects (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtwebchannel (5.15.11+dfsg-1build1) ... 185s Setting up python3-pyqt5.qtwebkit (5.15.11+dfsg-1build1) ... 185s Setting up python3-pymol (3.0.0+dfsg-1) ... 186s Setting up python3-pyqt5.qtquick (5.15.11+dfsg-1build1) ... 186s Setting up python3-qtpy (2.4.1-2) ... 186s Setting up python3-qtconsole (5.5.2-1) ... 186s Setting up adwaita-icon-theme (47.0-2) ... 186s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 186s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 186s Setting up python3-fonttools (4.46.0-1build2) ... 188s Setting up humanity-icon-theme (0.6.16) ... 188s Setting up python3-matplotlib (3.8.3-3) ... 190s Setting up ubuntu-mono (24.04-0ubuntu1) ... 190s Setting up python3-fabio (2024.4.0-2) ... 191s Setting up python3-silx (2.1.2+dfsg-1) ... 193s Setting up python3-pyfai (2024.05-3) ... 193s /usr/lib/python3/dist-packages/pyFAI/method_registry.py:385: SyntaxWarning: invalid escape sequence '\ ' 193s """Constructor of the class, registering the methods. 193s /usr/lib/python3/dist-packages/pyFAI/opencl/preproc.py:514: SyntaxWarning: invalid escape sequence '\*' 193s """Common preprocessing step, implemented using OpenCL. May be inefficient 194s /usr/lib/python3/dist-packages/pyFAI/method_registry.py:385: SyntaxWarning: invalid escape sequence '\ ' 194s """Constructor of the class, registering the methods. 194s /usr/lib/python3/dist-packages/pyFAI/opencl/preproc.py:514: SyntaxWarning: invalid escape sequence '\*' 194s """Common preprocessing step, implemented using OpenCL. May be inefficient 194s Processing triggers for libc-bin (2.40-1ubuntu3) ... 194s Processing triggers for systemd (256.5-2ubuntu4) ... 194s Processing triggers for man-db (2.12.1-3) ... 195s Processing triggers for libglib2.0-0t64:amd64 (2.82.1-0ubuntu1) ... 195s Setting up libgtk-3-0t64:amd64 (3.24.43-3ubuntu2) ... 195s Processing triggers for udev (256.5-2ubuntu4) ... 196s Setting up libwxgtk3.2-1t64:amd64 (3.2.5+dfsg-1) ... 196s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.5+dfsg-1) ... 196s Setting up python3-wxgtk4.0 (4.2.1+dfsg-4) ... 198s Setting up python3-cctbx (2024.8+ds2+~3.21.1+ds1-3) ... 200s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 200s """ Iterator to generate strings of length n_chars, using upper-case, 200s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 200s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 209s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:777: SyntaxWarning: invalid escape sequence '\o' 209s width=pairwise_differences_db, label='$\omega_{hkl}$' 209s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:792: SyntaxWarning: invalid escape sequence '\o' 209s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 209s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:793: SyntaxWarning: invalid escape sequence '\o' 209s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 209s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:812: SyntaxWarning: invalid escape sequence '\o' 209s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 209s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:831: SyntaxWarning: invalid escape sequence '\s' 209s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 209s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:860: SyntaxWarning: invalid escape sequence '\m' 209s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 211s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{' 211s """ Iterator to generate strings of length n_chars, using upper-case, 211s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 211s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 220s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:777: SyntaxWarning: invalid escape sequence '\o' 220s width=pairwise_differences_db, label='$\omega_{hkl}$' 220s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:792: SyntaxWarning: invalid escape sequence '\o' 220s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 220s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:793: SyntaxWarning: invalid escape sequence '\o' 220s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 220s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:812: SyntaxWarning: invalid escape sequence '\o' 220s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 220s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:831: SyntaxWarning: invalid escape sequence '\s' 220s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 220s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:860: SyntaxWarning: invalid escape sequence '\m' 220s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 220s Setting up python3-dials (3.17.0+dfsg3-4) ... 222s Setting up dials (3.17.0+dfsg3-4) ... 222s Setting up autopkgtest-satdep (0) ... 222s Processing triggers for libc-bin (2.40-1ubuntu3) ... 231s (Reading database ... 162475 files and directories currently installed.) 231s Removing autopkgtest-satdep (0) ... 232s autopkgtest [13:39:06]: test command1: set -efu ; for py in $(py3versions -r 2>/dev/null) ; do cp -r tests conftest.py "$AUTOPKGTEST_TMP" || true ; cd "$AUTOPKGTEST_TMP" ; echo "Testing dials with $py:" ; DIALS_DATA="$AUTOPKGTEST_TMP" $py -m pytest --verbosity=2 ; done 232s autopkgtest [13:39:06]: test command1: [----------------------- 232s Testing dials with python3.13: 233s ============================= test session starts ============================== 233s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 233s cachedir: .pytest_cache 233s rootdir: /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 233s plugins: mock-3.14.0, typeguard-4.4.1, dials-data-2.4.0, xdist-3.6.1 248s collecting ... collected 148 items / 196 errors / 1 skipped 248s 248s ==================================== ERRORS ==================================== 248s _________ ERROR collecting tests/algorithms/background/test_gmodel.py __________ 248s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background/test_gmodel.py'. 248s Hint: make sure your test modules/packages have valid Python names. 248s Traceback: 248s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 248s mod = import_path( 248s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 248s importlib.import_module(module_name) 248s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 248s return _bootstrap._gcd_import(name[level:], package, level) 248s :1387: in _gcd_import 248s ??? 248s :1360: in _find_and_load 248s ??? 248s :1331: in _find_and_load_unlocked 248s ??? 248s :935: in _load_unlocked 248s ??? 248s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 248s exec(co, module.__dict__) 248s tests/algorithms/background/test_gmodel.py:9: in 248s from dials.algorithms.background.gmodel import StaticBackgroundModel 248s /usr/lib/python3/dist-packages/dials/algorithms/background/__init__.py:3: in 248s from dials_algorithms_background_ext import * # noqa: F403; lgtm 248s E ModuleNotFoundError: No module named 'dials_algorithms_background_ext' 248s ____ ERROR collecting tests/algorithms/background/test_outlier_rejector.py _____ 248s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background/test_outlier_rejector.py'. 248s Hint: make sure your test modules/packages have valid Python names. 248s Traceback: 248s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 248s mod = import_path( 248s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 248s importlib.import_module(module_name) 248s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 248s return _bootstrap._gcd_import(name[level:], package, level) 248s :1387: in _gcd_import 248s ??? 248s :1360: in _find_and_load 248s ??? 248s :1331: in _find_and_load_unlocked 248s ??? 248s :935: in _load_unlocked 248s ??? 248s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 248s exec(co, module.__dict__) 248s tests/algorithms/background/test_outlier_rejector.py:5: in 248s from dials.algorithms.background.simple import ( 248s /usr/lib/python3/dist-packages/dials/algorithms/background/__init__.py:3: in 248s from dials_algorithms_background_ext import * # noqa: F403; lgtm 248s E ModuleNotFoundError: No module named 'dials_algorithms_background_ext' 248s ________ ERROR collecting tests/algorithms/clustering/test_observers.py ________ 248s tests/algorithms/clustering/test_observers.py:6: in 248s from cctbx import sgtbx 248s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 248s __version__ = get_version() 248s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 248s import libtbx.load_env 248s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 248s libtbx.env = libtbx.env_config.unpickle() 248s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 248s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 248s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 248s if (dirname and op.samefile(build_path, dirname)): 248s :136: in samefile 248s ??? 248s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 248s __________ ERROR collecting tests/algorithms/clustering/test_plots.py __________ 248s tests/algorithms/clustering/test_plots.py:5: in 248s from cctbx import sgtbx 248s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 248s __version__ = get_version() 248s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 248s import libtbx.load_env 248s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 248s libtbx.env = libtbx.env_config.unpickle() 248s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 248s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 248s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 248s if (dirname and op.samefile(build_path, dirname)): 248s :136: in samefile 248s ??? 248s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 248s ________ ERROR collecting tests/algorithms/clustering/test_unit_cell.py ________ 248s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/clustering/test_unit_cell.py'. 248s Hint: make sure your test modules/packages have valid Python names. 248s Traceback: 248s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 248s from . import multiarray 248s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 248s from . import overrides 248s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 248s from numpy.core._multiarray_umath import ( 248s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 248s 248s During handling of the above exception, another exception occurred: 248s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 248s from numpy.__config__ import show as show_config 248s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 248s from numpy.core._multiarray_umath import ( 248s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 248s raise ImportError(msg) 248s E ImportError: 248s E 248s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 248s E 248s E Importing the numpy C-extensions failed. This error can happen for 248s E many reasons, often due to issues with your setup or how NumPy was 248s E installed. 248s E 248s E We have compiled some common reasons and troubleshooting tips at: 248s E 248s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 248s E 248s E Please note and check the following: 248s E 248s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 248s E * The NumPy version is: "1.26.4" 248s E 248s E and make sure that they are the versions you expect. 248s E Please carefully study the documentation linked above for further help. 248s E 248s E Original error was: No module named 'numpy.core._multiarray_umath' 248s 248s The above exception was the direct cause of the following exception: 248s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 248s mod = import_path( 248s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 248s importlib.import_module(module_name) 248s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 248s return _bootstrap._gcd_import(name[level:], package, level) 248s :1387: in _gcd_import 248s ??? 248s :1360: in _find_and_load 248s ??? 248s :1331: in _find_and_load_unlocked 248s ??? 248s :935: in _load_unlocked 248s ??? 248s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 248s exec(co, module.__dict__) 248s tests/algorithms/clustering/test_unit_cell.py:5: in 248s import numpy as np 248s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 248s raise ImportError(msg) from e 248s E ImportError: Error importing numpy: you should not try to import numpy from 248s E its source directory; please exit the numpy source tree, and relaunch 248s E your python interpreter from there. 248s _ ERROR collecting tests/algorithms/generate_test_reflections/test_generate_test_refl.py _ 248s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/generate_test_reflections/test_generate_test_refl.py'. 248s Hint: make sure your test modules/packages have valid Python names. 248s Traceback: 248s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 248s mod = import_path( 248s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 248s importlib.import_module(module_name) 248s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 248s return _bootstrap._gcd_import(name[level:], package, level) 248s :1387: in _gcd_import 248s ??? 248s :1360: in _find_and_load 248s ??? 248s :1331: in _find_and_load_unlocked 248s ??? 248s :935: in _load_unlocked 248s ??? 248s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 248s exec(co, module.__dict__) 248s tests/algorithms/generate_test_reflections/test_generate_test_refl.py:5: in 248s from dials.algorithms.simulation.generate_test_reflections import main, master_phil 248s /usr/lib/python3/dist-packages/dials/algorithms/simulation/__init__.py:3: in 248s from dials_algorithms_simulation_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_simulation_ext' 249s _ ERROR collecting tests/algorithms/image/centroid/test_generate_bias_lookup_table.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid/test_generate_bias_lookup_table.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/image/centroid/test_generate_bias_lookup_table.py:5: in 249s from dials.algorithms.image.centroid.generate_bias_lookup_table import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/image/centroid/__init__.py:3: in 249s from dials_algorithms_image_centroid_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_image_centroid_ext' 249s _______ ERROR collecting tests/algorithms/image/threshold/test_local.py ________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold/test_local.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/image/threshold/test_local.py:7: in 249s from numpy.random import poisson 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ________ ERROR collecting tests/algorithms/indexing/basis_vector_search ________ 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/indexing/basis_vector_search/conftest.py:7: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/indexing/lattice_search/test_lattice_search.py _ 249s tests/algorithms/indexing/lattice_search/test_lattice_search.py:6: in 249s from cctbx import sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/indexing/ssx/test_analysis.py ________ 249s tests/algorithms/indexing/ssx/test_analysis.py:5: in 249s from cctbx import crystal 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/indexing/test_assign_indices.py _______ 249s tests/algorithms/indexing/test_assign_indices.py:10: in 249s from cctbx import crystal, sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/indexing/test_compare_orientation_matrices.py _ 249s tests/algorithms/indexing/test_compare_orientation_matrices.py:5: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___________ ERROR collecting tests/algorithms/indexing/test_index.py ___________ 249s tests/algorithms/indexing/test_index.py:11: in 249s from cctbx import uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/algorithms/indexing/test_max_cell.py __________ 249s tests/algorithms/indexing/test_max_cell.py:8: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____ ERROR collecting tests/algorithms/indexing/test_model_evaluation.py ______ 249s tests/algorithms/indexing/test_model_evaluation.py:11: in 249s from cctbx import sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/indexing/test_non_primitive_basis.py ____ 249s tests/algorithms/indexing/test_non_primitive_basis.py:6: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/algorithms/indexing/test_phi_scan.py __________ 249s tests/algorithms/indexing/test_phi_scan.py:5: in 249s from cctbx import uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/algorithms/indexing/test_symmetry.py __________ 249s tests/algorithms/indexing/test_symmetry.py:6: in 249s from cctbx import crystal, sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/integration/profile/test_empirical_modeller.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/profile/test_empirical_modeller.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/integration/profile/test_empirical_modeller.py:5: in 249s from dials.algorithms.profile_model.modeller import EmpiricalProfileModeller 249s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/modeller/__init__.py:3: in 249s from dials_algorithms_profile_model_modeller_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_profile_model_modeller_ext' 249s _ ERROR collecting tests/algorithms/integration/profile/test_profile_fitting.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/profile/test_profile_fitting.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/integration/profile/test_profile_fitting.py:5: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _ ERROR collecting tests/algorithms/integration/ssx/test_ellipsoid_integrate.py _ 249s tests/algorithms/integration/ssx/test_ellipsoid_integrate.py:7: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/integration/test_corrections.py _______ 249s tests/algorithms/integration/test_corrections.py:3: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/integration/test_filtering.py ________ 249s tests/algorithms/integration/test_filtering.py:3: in 249s from cctbx import sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/integration/test_integrator.py _______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/test_integrator.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/integration/test_integrator.py:6: in 249s from dials.algorithms.integration import integrator 249s /usr/lib/python3/dist-packages/dials/algorithms/integration/__init__.py:6: in 249s from dials_algorithms_integration_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_integration_ext' 249s _________ ERROR collecting tests/algorithms/integration/test_kapton.py _________ 249s tests/algorithms/integration/test_kapton.py:8: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __ ERROR collecting tests/algorithms/integration/test_parallel_integrator.py ___ 249s tests/algorithms/integration/test_parallel_integrator.py:10: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/integration/test_processor.py ________ 249s tests/algorithms/integration/test_processor.py:9: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/integration/test_simple_integrate.py ____ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/test_simple_integrate.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/integration/test_simple_integrate.py:8: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s ______ ERROR collecting tests/algorithms/integration/test_timing_info.py _______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/test_timing_info.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/integration/test_timing_info.py:3: in 249s from dials.algorithms.integration import TimingInfo 249s /usr/lib/python3/dist-packages/dials/algorithms/integration/__init__.py:6: in 249s from dials_algorithms_integration_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_integration_ext' 249s _______ ERROR collecting tests/algorithms/merging/test_french_wilson.py ________ 249s tests/algorithms/merging/test_french_wilson.py:5: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___________ ERROR collecting tests/algorithms/merging/test_merge.py ____________ 249s tests/algorithms/merging/test_merge.py:5: in 249s from cctbx import crystal, miller, sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/polygon/clip/test_clipping.py ________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip/test_clipping.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/polygon/clip/test_clipping.py:6: in 249s from scitbx.array_family import flex 249s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:7: in 249s import boost_adaptbx.boost.optional # import dependency 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/optional.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s ___ ERROR collecting tests/algorithms/polygon/test_spatial_interpolation.py ____ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/test_spatial_interpolation.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/polygon/test_spatial_interpolation.py:5: in 249s from dials.algorithms.polygon.spatial_interpolation import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/polygon/spatial_interpolation.py:3: in 249s from dials_algorithms_polygon_spatial_interpolation_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_polygon_spatial_interpolation_ext' 249s __________ ERROR collecting tests/algorithms/profile_model/ellipsoid ___________ 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/profile_model/ellipsoid/conftest.py:5: in 249s from dxtbx.model import BeamFactory, CrystalFactory, DetectorFactory, Experiment, Scan 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/profile_model/test_calculator.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model/test_calculator.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/profile_model/test_calculator.py:3: in 249s from dials.algorithms.profile_model.gaussian_rs.calculator import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/gaussian_rs/__init__.py:3: in 249s import dials.algorithms.profile_model.modeller # noqa: F401; lgtm; true import dependency 249s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/modeller/__init__.py:3: in 249s from dials_algorithms_profile_model_modeller_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_profile_model_modeller_ext' 249s _ ERROR collecting tests/algorithms/refinement/test_angle_derivatives_wrt_vector_elts.py _ 249s tests/algorithms/refinement/test_angle_derivatives_wrt_vector_elts.py:10: in 249s from libtbx.test_utils import approx_equal 249s /usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/refinement/test_centroid_outlier.py _____ 249s tests/algorithms/refinement/test_centroid_outlier.py:5: in 249s from dials.algorithms.refinement.outlier_detection import CentroidOutlierFactory 249s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 249s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory 249s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:14: in 249s from dxtbx.model.experiment_list import ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/refinement/test_constraints.py _______ 249s tests/algorithms/refinement/test_constraints.py:11: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___ ERROR collecting tests/algorithms/refinement/test_crystal_parameters.py ____ 249s tests/algorithms/refinement/test_crystal_parameters.py:5: in 249s from dxtbx.model import Crystal 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/refinement/test_cspad_refinement.py _____ 249s tests/algorithms/refinement/test_cspad_refinement.py:6: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___ ERROR collecting tests/algorithms/refinement/test_detector_parameters.py ___ 249s tests/algorithms/refinement/test_detector_parameters.py:7: in 249s from dxtbx.model import BeamFactory, Detector, DetectorFactory, Panel 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __ ERROR collecting tests/algorithms/refinement/test_goniometer_parameters.py __ 249s tests/algorithms/refinement/test_goniometer_parameters.py:7: in 249s from dxtbx.model import Goniometer 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_multi_experiment_refinement.py _ 249s tests/algorithms/refinement/test_multi_experiment_refinement.py:9: in 249s from cctbx.sgtbx import space_group, space_group_symbols 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_multi_panel_detector_parameterisation.py _ 249s tests/algorithms/refinement/test_multi_panel_detector_parameterisation.py:16: in 249s from cctbx.sgtbx import space_group, space_group_symbols 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_parameter_auto_reduction.py _ 249s tests/algorithms/refinement/test_parameter_auto_reduction.py:5: in 249s from dxtbx.model import Detector 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___ ERROR collecting tests/algorithms/refinement/test_refine_multi_stills.py ___ 249s tests/algorithms/refinement/test_refine_multi_stills.py:9: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___ ERROR collecting tests/algorithms/refinement/test_refine_multi_wedges.py ___ 249s tests/algorithms/refinement/test_refine_multi_wedges.py:13: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____ ERROR collecting tests/algorithms/refinement/test_refiner_config.py ______ 249s tests/algorithms/refinement/test_refiner_config.py:10: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/refinement/test_refiner_units.py ______ 249s tests/algorithms/refinement/test_refiner_units.py:11: in 249s from dials.algorithms.refinement.refiner import _copy_experiments_for_refining 249s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 249s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory 249s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:14: in 249s from dxtbx.model.experiment_list import ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___ ERROR collecting tests/algorithms/refinement/test_reflection_manager.py ____ 249s tests/algorithms/refinement/test_reflection_manager.py:7: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_restraints_parameterisation.py _ 249s tests/algorithms/refinement/test_restraints_parameterisation.py:9: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_rotation_decomposition.py __ 249s tests/algorithms/refinement/test_rotation_decomposition.py:9: in 249s from libtbx.test_utils import approx_equal 249s /usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_beam_refinement.py _ 249s tests/algorithms/refinement/test_scan_varying_beam_refinement.py:8: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_block_calculation.py _ 249s tests/algorithms/refinement/test_scan_varying_block_calculation.py:12: in 249s from dxtbx.model.experiment_list import Experiment, ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_model_parameters.py _ 249s tests/algorithms/refinement/test_scan_varying_model_parameters.py:9: in 249s from dxtbx.model import Beam, Crystal, Goniometer 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_scan_varying_prediction_parameters.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/refinement/test_scan_varying_prediction_parameters.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/refinement/test_scan_varying_prediction_parameters.py:8: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _ ERROR collecting tests/algorithms/refinement/test_stills_prediction_parameters.py _ 249s tests/algorithms/refinement/test_stills_prediction_parameters.py:5: in 249s from cctbx.sgtbx import space_group, space_group_symbols 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_stills_spherical_relp_derivatives.py _ 249s tests/algorithms/refinement/test_stills_spherical_relp_derivatives.py:10: in 249s from cctbx.sgtbx import space_group, space_group_symbols 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/refinement/test_sv_multi_panel_refinement.py _ 249s tests/algorithms/refinement/test_sv_multi_panel_refinement.py:6: in 249s from dials.algorithms.refinement.engine import Journal 249s /usr/lib/python3/dist-packages/dials/algorithms/refinement/__init__.py:12: in 249s from dials.algorithms.refinement.refiner import Refiner, RefinerFactory 249s /usr/lib/python3/dist-packages/dials/algorithms/refinement/refiner.py:14: in 249s from dxtbx.model.experiment_list import ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __ ERROR collecting tests/algorithms/refinement/test_two_theta_refinement.py ___ 249s tests/algorithms/refinement/test_two_theta_refinement.py:11: in 249s from dxtbx.model.experiment_list import Experiment, ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____ ERROR collecting tests/algorithms/refinement/test_xfel_metrology.py ______ 249s tests/algorithms/refinement/test_xfel_metrology.py:8: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __ ERROR collecting tests/algorithms/reflection_basis/test_beam_vector_map.py __ 249s tests/algorithms/reflection_basis/test_beam_vector_map.py:8: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/reflection_basis/test_coordinate_system.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis/test_coordinate_system.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/reflection_basis/test_coordinate_system.py:10: in 249s from dials.algorithms.profile_model.gaussian_rs import CoordinateSystem 249s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/gaussian_rs/__init__.py:3: in 249s import dials.algorithms.profile_model.modeller # noqa: F401; lgtm; true import dependency 249s /usr/lib/python3/dist-packages/dials/algorithms/profile_model/modeller/__init__.py:3: in 249s from dials_algorithms_profile_model_modeller_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_profile_model_modeller_ext' 249s _ ERROR collecting tests/algorithms/reflection_basis/test_grid_index_generator.py _ 249s tests/algorithms/reflection_basis/test_grid_index_generator.py:6: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/reflection_basis/test_map_frames.py _____ 249s tests/algorithms/reflection_basis/test_map_frames.py:6: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____ ERROR collecting tests/algorithms/reflection_basis/test_transform.py _____ 249s tests/algorithms/reflection_basis/test_transform.py:8: in 249s from dxtbx.model import ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/scaling/cross_validation/test_crossvalidation.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation/test_crossvalidation.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/cross_validation/test_crossvalidation.py:10: in 249s from dials.algorithms.scaling.cross_validation.crossvalidator import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/scaling/cross_validation/crossvalidator.py:15: in 249s from scitbx.array_family import flex 249s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:7: in 249s import boost_adaptbx.boost.optional # import dependency 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/optional.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s __________ ERROR collecting tests/algorithms/scaling/test_Ih_table.py __________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_Ih_table.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_Ih_table.py:5: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _______ ERROR collecting tests/algorithms/scaling/test_basis_function.py _______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_basis_function.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_basis_function.py:9: in 249s from dials.algorithms.scaling.basis_functions import RefinerCalculator 249s /usr/lib/python3/dist-packages/dials/algorithms/scaling/basis_functions.py:9: in 249s from scitbx import sparse 249s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ____ ERROR collecting tests/algorithms/scaling/test_combine_intensities.py _____ 249s tests/algorithms/scaling/test_combine_intensities.py:11: in 249s from dxtbx.model import Crystal, Experiment 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ________ ERROR collecting tests/algorithms/scaling/test_error_model.py _________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_error_model.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_error_model.py:9: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _____ ERROR collecting tests/algorithms/scaling/test_gaussian_smoother.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_gaussian_smoother.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_gaussian_smoother.py:7: in 249s from dials.algorithms.scaling.model.components.smooth_scale_components import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/scaling/model/components/smooth_scale_components.py:13: in 249s from scitbx import sparse 249s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ___________ ERROR collecting tests/algorithms/scaling/test_model.py ____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_model.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_model.py:14: in 249s from dials.algorithms.scaling.model.model import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/scaling/model/model.py:15: in 249s from dials.algorithms.scaling.error_model.error_model import BasicErrorModel 249s /usr/lib/python3/dist-packages/dials/algorithms/scaling/error_model/error_model.py:10: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _________ ERROR collecting tests/algorithms/scaling/test_observers.py __________ 249s tests/algorithms/scaling/test_observers.py:7: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____ ERROR collecting tests/algorithms/scaling/test_outlier_rejection.py ______ 249s tests/algorithms/scaling/test_outlier_rejection.py:11: in 249s from cctbx import uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/scaling/test_param_manager.py ________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_param_manager.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_param_manager.py:11: in 249s from scitbx import sparse 249s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ___________ ERROR collecting tests/algorithms/scaling/test_plots.py ____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_plots.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_plots.py:7: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ____ ERROR collecting tests/algorithms/scaling/test_reflection_selection.py ____ 249s tests/algorithms/scaling/test_reflection_selection.py:10: in 249s from cctbx import sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___________ ERROR collecting tests/algorithms/scaling/test_scale.py ____________ 249s tests/algorithms/scaling/test_scale.py:14: in 249s import iotbx.merging_statistics 249s /usr/lib/python3/dist-packages/iotbx/__init__.py:5: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/scaling/test_scale_and_filter.py ______ 249s tests/algorithms/scaling/test_scale_and_filter.py:7: in 249s from dxtbx.model import Crystal, Experiment, Scan 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/scaling/test_scale_components.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_scale_components.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_scale_components.py:11: in 249s from scitbx import sparse 249s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ___________ ERROR collecting tests/algorithms/scaling/test_scaler.py ___________ 249s tests/algorithms/scaling/test_scaler.py:7: in 249s from dxtbx import flumpy 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/algorithms/scaling/test_scaler_factory.py _______ 249s tests/algorithms/scaling/test_scaler_factory.py:11: in 249s from dxtbx.model import Crystal 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/scaling/test_scaling_library.py _______ 249s tests/algorithms/scaling/test_scaling_library.py:12: in 249s from cctbx import uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____ ERROR collecting tests/algorithms/scaling/test_scaling_restraints.py _____ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_scaling_restraints.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_scaling_restraints.py:11: in 249s from scitbx import sparse 249s /usr/lib/python3/dist-packages/scitbx/sparse/__init__.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _____ ERROR collecting tests/algorithms/scaling/test_scaling_utilities.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_scaling_utilities.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_scaling_utilities.py:9: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ______ ERROR collecting tests/algorithms/scaling/test_target_function.py _______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_target_function.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_target_function.py:10: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ________ ERROR collecting tests/algorithms/scaling/test_targetscaler.py ________ 249s tests/algorithms/scaling/test_targetscaler.py:13: in 249s from dxtbx.model import Crystal, Experiment, ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/algorithms/scaling/test_weighting.py __________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/test_weighting.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/scaling/test_weighting.py:11: in 249s from dials.algorithms.scaling.weighting import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/scaling/weighting.py:7: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ______ ERROR collecting tests/algorithms/shoebox/test_bbox_calculator.py _______ 249s tests/algorithms/shoebox/test_bbox_calculator.py:8: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/shoebox/test_find_overlapping.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox/test_find_overlapping.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/shoebox/test_find_overlapping.py:5: in 249s from dials.algorithms.shoebox import find_overlapping 249s /usr/lib/python3/dist-packages/dials/algorithms/shoebox/__init__.py:4: in 249s from dials_algorithms_shoebox_ext import * 249s E ModuleNotFoundError: No module named 'dials_algorithms_shoebox_ext' 249s ______ ERROR collecting tests/algorithms/shoebox/test_mask_foreground.py _______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox/test_mask_foreground.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/shoebox/test_mask_foreground.py:6: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ______ ERROR collecting tests/algorithms/shoebox/test_mask_overlapping.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox/test_mask_overlapping.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/shoebox/test_mask_overlapping.py:3: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ___ ERROR collecting tests/algorithms/shoebox/test_partiality_calculator.py ____ 249s tests/algorithms/shoebox/test_partiality_calculator.py:5: in 249s from dxtbx.model.experiment_list import ExperimentList, ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/simulation/test_reciprocal_space.py _____ 249s tests/algorithms/simulation/test_reciprocal_space.py:5: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __ ERROR collecting tests/algorithms/spot_finding/test_per_image_analysis.py ___ 249s tests/algorithms/spot_finding/test_per_image_analysis.py:5: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/spot_prediction/test_reeke_index_generator.py _ 249s tests/algorithms/spot_prediction/test_reeke_index_generator.py:6: in 249s from cctbx.sgtbx import space_group, space_group_info, space_group_symbols 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py _ 249s tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py:8: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/spot_prediction/test_scan_varying_predictor.py _ 249s tests/algorithms/spot_prediction/test_scan_varying_predictor.py:11: in 249s from cctbx.sgtbx import space_group, space_group_symbols 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py _ 249s tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py:8: in 249s from .test_scan_static_reflection_predictor import ( # noqa: F401, used as test fixture; isort:skip 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py:8: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/statistics/test_binned_statistics.py ____ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics/test_binned_statistics.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/statistics/test_binned_statistics.py:5: in 249s from scitbx.array_family import flex 249s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:7: in 249s import boost_adaptbx.boost.optional # import dependency 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/optional.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _ ERROR collecting tests/algorithms/statistics/test_delta_cchalf_algorithm.py __ 249s tests/algorithms/statistics/test_delta_cchalf_algorithm.py:7: in 249s from dxtbx.model import Crystal, Experiment, ExperimentList, Scan 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/symmetry/absences/test_laue_group_info.py __ 249s tests/algorithms/symmetry/absences/test_laue_group_info.py:7: in 249s from dials.algorithms.symmetry.absences.laue_groups_info import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:15: in 249s from cctbx import adptbx, sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______ ERROR collecting tests/algorithms/symmetry/absences/test_plots.py _______ 249s tests/algorithms/symmetry/absences/test_plots.py:5: in 249s from dials.algorithms.symmetry.absences.plots import color_axis_data, plot_screw_axes 249s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:15: in 249s from cctbx import adptbx, sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/algorithms/symmetry/absences/test_screw_axes.py ____ 249s tests/algorithms/symmetry/absences/test_screw_axes.py:7: in 249s from dials.algorithms.symmetry.absences.screw_axes import ( 249s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:15: in 249s from cctbx import adptbx, sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/symmetry/cosym/test_cosym_analyse_datasets.py _ 249s tests/algorithms/symmetry/cosym/test_cosym_analyse_datasets.py:6: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py:3: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ____ ERROR collecting tests/algorithms/symmetry/cosym/test_cosym_target.py _____ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_cosym_target.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/symmetry/cosym/test_cosym_target.py:3: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ______ ERROR collecting tests/algorithms/symmetry/cosym/test_observers.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_observers.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/symmetry/cosym/test_observers.py:5: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ________ ERROR collecting tests/algorithms/symmetry/cosym/test_plots.py ________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry/cosym/test_plots.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/symmetry/cosym/test_plots.py:3: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _ ERROR collecting tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py _ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py:5: in 249s from scitbx.array_family import flex 249s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:7: in 249s import boost_adaptbx.boost.optional # import dependency 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/optional.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________ ERROR collecting tests/algorithms/symmetry/test_laue_group.py _________ 249s tests/algorithms/symmetry/test_laue_group.py:5: in 249s from cctbx import crystal, miller, sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __________ ERROR collecting tests/algorithms/symmetry/test_origin.py ___________ 249s tests/algorithms/symmetry/test_origin.py:3: in 249s from dials.algorithms.symmetry import origin 249s /usr/lib/python3/dist-packages/dials/algorithms/symmetry/__init__.py:15: in 249s from cctbx import adptbx, sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ___ ERROR collecting tests/algorithms/symmetry/test_reindex_to_reference.py ____ 249s tests/algorithms/symmetry/test_reindex_to_reference.py:9: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _ ERROR collecting tests/algorithms/symmetry/test_score_symmetry_element_subgroup.py _ 249s tests/algorithms/symmetry/test_score_symmetry_element_subgroup.py:5: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/array_family/test_identifiers_handling.py _______ 249s tests/array_family/test_identifiers_handling.py:4: in 249s from dxtbx.model import Experiment, ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/array_family/test_reflection_table.py _________ 249s tests/array_family/test_reflection_table.py:12: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/command_line/test_anvil_correction.py _________ 249s tests/command_line/test_anvil_correction.py:13: in 249s from dxtbx.model import ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________ ERROR collecting tests/command_line/test_apply_mask.py ____________ 249s tests/command_line/test_apply_mask.py:7: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __ ERROR collecting tests/command_line/test_assign_experiment_identifiers.py ___ 249s tests/command_line/test_assign_experiment_identifiers.py:11: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ________ ERROR collecting tests/command_line/test_cluster_unit_cell.py _________ 249s tests/command_line/test_cluster_unit_cell.py:10: in 249s from cctbx import crystal 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/command_line/test_combine_experiments.py ________ 249s tests/command_line/test_combine_experiments.py:15: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/command_line/test_compute_delta_cchalf.py _______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_compute_delta_cchalf.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_compute_delta_cchalf.py:12: in 249s from dials.command_line.compute_delta_cchalf import CCHalfFromMTZ, phil_scope, run 249s /usr/lib/python3/dist-packages/dials/command_line/compute_delta_cchalf.py:8: in 249s from dials.algorithms.statistics.cc_half_algorithm import CCHalfFromDials, CCHalfFromMTZ 249s /usr/lib/python3/dist-packages/dials/algorithms/statistics/__init__.py:3: in 249s from dials_algorithms_statistics_ext import * # noqa: F403; lgtm 249s E ModuleNotFoundError: No module named 'dials_algorithms_statistics_ext' 249s ______________ ERROR collecting tests/command_line/test_cosym.py _______________ 249s tests/command_line/test_cosym.py:8: in 249s from cctbx import sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/command_line/test_damage_analysis.py __________ 249s tests/command_line/test_damage_analysis.py:9: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __________ ERROR collecting tests/command_line/test_detect_blanks.py ___________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_detect_blanks.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_detect_blanks.py:9: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _______ ERROR collecting tests/command_line/test_estimate_resolution.py ________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_estimate_resolution.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_estimate_resolution.py:9: in 249s from dials.command_line import estimate_resolution as cmdline 249s /usr/lib/python3/dist-packages/dials/command_line/estimate_resolution.py:70: in 249s from dials.util import log, resolution_analysis, show_mail_handle_errors 249s /usr/lib/python3/dist-packages/dials/util/resolution_analysis.py:12: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s ______________ ERROR collecting tests/command_line/test_export.py ______________ 249s tests/command_line/test_export.py:10: in 249s import iotbx.cif 249s /usr/lib/python3/dist-packages/iotbx/__init__.py:5: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __________ ERROR collecting tests/command_line/test_export_bitmaps.py __________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_export_bitmaps.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_export_bitmaps.py:8: in 249s from dials.command_line import export_bitmaps 249s /usr/lib/python3/dist-packages/dials/command_line/export_bitmaps.py:6: in 249s import PIL.Image 249s /usr/lib/python3/dist-packages/PIL/Image.py:100: in 249s from . import _imaging as core 249s E ImportError: cannot import name '_imaging' from 'PIL' (/usr/lib/python3/dist-packages/PIL/__init__.py) 249s ____________ ERROR collecting tests/command_line/test_export_xds.py ____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_export_xds.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_export_xds.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________ ERROR collecting tests/command_line/test_filter_reflections.py ________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_filter_reflections.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_filter_reflections.py:8: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________ ERROR collecting tests/command_line/test_find_rotation_axis.py ________ 249s tests/command_line/test_find_rotation_axis.py:3: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________ ERROR collecting tests/command_line/test_find_spots.py ____________ 249s tests/command_line/test_find_spots.py:11: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ________ ERROR collecting tests/command_line/test_frame_orientations.py ________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_frame_orientations.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_frame_orientations.py:5: in 249s from dials.command_line.frame_orientations import extract_experiment_data 249s /usr/lib/python3/dist-packages/dials/command_line/frame_orientations.py:16: in 249s import matplotlib 249s /usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in 249s import numpy 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _____ ERROR collecting tests/command_line/test_generate_distortion_maps.py _____ 249s tests/command_line/test_generate_distortion_maps.py:9: in 249s from dxtbx.format.Format import Reader 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __________ ERROR collecting tests/command_line/test_generate_mask.py ___________ 249s tests/command_line/test_generate_mask.py:7: in 249s from dxtbx.model import ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______________ ERROR collecting tests/command_line/test_import.py ______________ 249s tests/command_line/test_import.py:11: in 249s from dxtbx.imageset import ImageSequence 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________ ERROR collecting tests/command_line/test_import_xds.py ____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_import_xds.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_import_xds.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ______ ERROR collecting tests/command_line/test_indexed_as_integrated.py _______ 249s tests/command_line/test_indexed_as_integrated.py:6: in 249s import iotbx.merging_statistics 249s /usr/lib/python3/dist-packages/iotbx/__init__.py:5: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________ ERROR collecting tests/command_line/test_integrate.py _____________ 249s tests/command_line/test_integrate.py:13: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______________ ERROR collecting tests/command_line/test_merge.py _______________ 249s tests/command_line/test_merge.py:12: in 249s from cctbx import uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/command_line/test_missing_reflections.py ________ 249s tests/command_line/test_missing_reflections.py:3: in 249s from dials.command_line import missing_reflections 249s /usr/lib/python3/dist-packages/dials/command_line/missing_reflections.py:23: in 249s from cctbx import uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/command_line/test_model_background.py _________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_model_background.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_model_background.py:11: in 249s from scitbx.array_family import flex 249s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:7: in 249s import boost_adaptbx.boost.optional # import dependency 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/optional.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _________ ERROR collecting tests/command_line/test_modify_geometry.py __________ 249s tests/command_line/test_modify_geometry.py:10: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __________ ERROR collecting tests/command_line/test_plot_Fo_vs_Fc.py ___________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_plot_Fo_vs_Fc.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_plot_Fo_vs_Fc.py:3: in 249s from dials.command_line import plot_Fo_vs_Fc 249s /usr/lib/python3/dist-packages/dials/command_line/plot_Fo_vs_Fc.py:15: in 249s import matplotlib 249s /usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in 249s import numpy 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _____ ERROR collecting tests/command_line/test_plot_scan_varying_model.py ______ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_plot_scan_varying_model.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_plot_scan_varying_model.py:5: in 249s from dials.command_line import plot_scan_varying_model 249s /usr/lib/python3/dist-packages/dials/command_line/plot_scan_varying_model.py:6: in 249s import matplotlib 249s /usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in 249s import numpy 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _____________ ERROR collecting tests/command_line/test_predict.py ______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_predict.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_predict.py:8: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _ ERROR collecting tests/command_line/test_preservation_of_experiment_identifiers.py _ 249s tests/command_line/test_preservation_of_experiment_identifiers.py:6: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______________ ERROR collecting tests/command_line/test_refine.py ______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_refine.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_refine.py:18: in 249s import numpy as np 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s _____ ERROR collecting tests/command_line/test_refine_bravais_settings.py ______ 249s tests/command_line/test_refine_bravais_settings.py:11: in 249s from cctbx import sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____________ ERROR collecting tests/command_line/test_reindex.py ______________ 249s tests/command_line/test_reindex.py:11: in 249s from cctbx import sgtbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________ ERROR collecting tests/command_line/test_rs_mapper.py _____________ 249s tests/command_line/test_rs_mapper.py:9: in 249s from iotbx import ccp4_map 249s /usr/lib/python3/dist-packages/iotbx/__init__.py:5: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______ ERROR collecting tests/command_line/test_search_beam_position.py _______ 249s tests/command_line/test_search_beam_position.py:9: in 249s from cctbx import uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ________ ERROR collecting tests/command_line/test_sequence_to_stills.py ________ 249s tests/command_line/test_sequence_to_stills.py:6: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _______________ ERROR collecting tests/command_line/test_show.py _______________ 249s tests/command_line/test_show.py:8: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __________ ERROR collecting tests/command_line/test_slice_sequence.py __________ 249s tests/command_line/test_slice_sequence.py:8: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/command_line/test_sort_reflections.py _________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_sort_reflections.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_sort_reflections.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________ ERROR collecting tests/command_line/test_split_experiments.py _________ 249s tests/command_line/test_split_experiments.py:10: in 249s from dxtbx.model import Beam, Experiment, ExperimentList 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________ ERROR collecting tests/command_line/test_ssx_index.py _____________ 249s tests/command_line/test_ssx_index.py:9: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s __________ ERROR collecting tests/command_line/test_ssx_integrate.py ___________ 249s tests/command_line/test_ssx_integrate.py:9: in 249s from dxtbx.serialize import load 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____ ERROR collecting tests/command_line/test_stereographic_projections.py _____ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_stereographic_projections.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 249s from . import multiarray 249s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 249s from . import overrides 249s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 249s from numpy.core._multiarray_umath import ( 249s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 249s from numpy.__config__ import show as show_config 249s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 249s from numpy.core._multiarray_umath import ( 249s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 249s raise ImportError(msg) 249s E ImportError: 249s E 249s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 249s E 249s E Importing the numpy C-extensions failed. This error can happen for 249s E many reasons, often due to issues with your setup or how NumPy was 249s E installed. 249s E 249s E We have compiled some common reasons and troubleshooting tips at: 249s E 249s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 249s E 249s E Please note and check the following: 249s E 249s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 249s E * The NumPy version is: "1.26.4" 249s E 249s E and make sure that they are the versions you expect. 249s E Please carefully study the documentation linked above for further help. 249s E 249s E Original error was: No module named 'numpy.core._multiarray_umath' 249s 249s The above exception was the direct cause of the following exception: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/command_line/test_stereographic_projections.py:9: in 249s from dials.command_line import stereographic_projection 249s /usr/lib/python3/dist-packages/dials/command_line/stereographic_projection.py:10: in 249s import matplotlib 249s /usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in 249s import numpy 249s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 249s raise ImportError(msg) from e 249s E ImportError: Error importing numpy: you should not try to import numpy from 249s E its source directory; please exit the numpy source tree, and relaunch 249s E your python interpreter from there. 249s __________ ERROR collecting tests/command_line/test_stills_process.py __________ 249s tests/command_line/test_stills_process.py:10: in 249s import dxtbx 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____________ ERROR collecting tests/command_line/test_symmetry.py _____________ 249s tests/command_line/test_symmetry.py:11: in 249s from cctbx import sgtbx, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/command_line/test_two_theta_refine.py _________ 249s tests/command_line/test_two_theta_refine.py:14: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ______________ ERROR collecting tests/model/data/test_shoebox.py _______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/model/data/test_shoebox.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/model/data/test_shoebox.py:9: in 249s from dials.model.data import Shoebox 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________________ ERROR collecting tests/report/test_analysis.py ________________ 249s tests/report/test_analysis.py:9: in 249s from cctbx import miller 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________________ ERROR collecting tests/report/test_plots.py __________________ 249s tests/report/test_plots.py:13: in 249s from cctbx import crystal, miller, uctbx 249s /usr/lib/python3/dist-packages/cctbx/__init__.py:4: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _____________________ ERROR collecting tests/test_phil.py ______________________ 249s tests/test_phil.py:5: in 249s import dials.util.phil 249s /usr/lib/python3/dist-packages/dials/util/phil.py:8: in 249s from dxtbx.model.experiment_list import ExperimentListFactory 249s /usr/lib/python3/dist-packages/dxtbx/__init__.py:8: in 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________________ ERROR collecting tests/test_pychef.py _____________________ 249s tests/test_pychef.py:5: in 249s import iotbx.mtz 249s /usr/lib/python3/dist-packages/iotbx/__init__.py:5: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s _________ ERROR collecting tests/test_scan_varying_integration_bug.py __________ 249s tests/test_scan_varying_integration_bug.py:6: in 249s import iotbx.mtz 249s /usr/lib/python3/dist-packages/iotbx/__init__.py:5: in 249s __version__ = get_version() 249s /usr/lib/python3/dist-packages/libtbx/version.py:159: in get_version 249s import libtbx.load_env 249s /usr/lib/python3/dist-packages/libtbx/load_env.py:5: in 249s libtbx.env = libtbx.env_config.unpickle() 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:3101: in unpickle 249s set_preferred_sys_prefix_and_sys_executable(build_path=build_path) 249s /usr/lib/python3/dist-packages/libtbx/env_config.py:2997: in set_preferred_sys_prefix_and_sys_executable 249s if (dirname and op.samefile(build_path, dirname)): 249s :136: in samefile 249s ??? 249s E FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ____________________ ERROR collecting tests/test_scitbx.py _____________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/test_scitbx.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:184: in exec_module 249s exec(co, module.__dict__) 249s tests/test_scitbx.py:3: in 249s from scitbx.array_family import flex 249s /usr/lib/python3/dist-packages/scitbx/array_family/flex.py:7: in 249s import boost_adaptbx.boost.optional # import dependency 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/optional.py:2: in 249s import boost_adaptbx.boost.python as bp 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________________ ERROR collecting tests/util/test_ascii_art.py _________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_ascii_art.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ______________ ERROR collecting tests/util/test_batch_handling.py ______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_batch_handling.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ______________ ERROR collecting tests/util/test_detect_blanks.py _______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_detect_blanks.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ____________ ERROR collecting tests/util/test_exception_handler.py _____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_exception_handler.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ______________ ERROR collecting tests/util/test_exclude_images.py ______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_exclude_images.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ______________ ERROR collecting tests/util/test_export_bitmaps.py ______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_export_bitmaps.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________________ ERROR collecting tests/util/test_export_mtz.py ________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_export_mtz.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________ ERROR collecting tests/util/test_filter_reflections_export.py _________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_filter_reflections_export.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ___________ ERROR collecting tests/util/test_htcondor_job_classad.py ___________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_htcondor_job_classad.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ______________ ERROR collecting tests/util/test_image_grouping.py ______________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_image_grouping.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ___________________ ERROR collecting tests/util/test_log.py ____________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_log.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _________________ ERROR collecting tests/util/test_masking.py __________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_masking.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ___________ ERROR collecting tests/util/test_missing_reflections.py ____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_missing_reflections.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ____________________ ERROR collecting tests/util/test_mp.py ____________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_mp.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s __________ ERROR collecting tests/util/test_multi_dataset_handling.py __________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_multi_dataset_handling.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s __________________ ERROR collecting tests/util/test_nexus.py ___________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_nexus.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s __________ ERROR collecting tests/util/test_nexus_multi_experiment.py __________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_nexus_multi_experiment.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _________________ ERROR collecting tests/util/test_observer.py _________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_observer.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _________________ ERROR collecting tests/util/test_options.py __________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_options.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s _____________ ERROR collecting tests/util/test_python_streambuf.py _____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_python_streambuf.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________________ ERROR collecting tests/util/test_reference.py _________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_reference.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ________________ ERROR collecting tests/util/test_render_3d.py _________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_render_3d.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s ___________ ERROR collecting tests/util/test_resolution_analysis.py ____________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_resolution_analysis.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s __________________ ERROR collecting tests/util/test_slice.py ___________________ 249s ImportError while importing test module '/tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/util/test_slice.py'. 249s Hint: make sure your test modules/packages have valid Python names. 249s Traceback: 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:22: in import_ext 249s try: mod = __import__(name) 249s E ModuleNotFoundError: No module named 'boost_python_meta_ext' 249s 249s During handling of the above exception, another exception occurred: 249s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 249s mod = import_path( 249s /usr/lib/python3/dist-packages/_pytest/pathlib.py:582: in import_path 249s importlib.import_module(module_name) 249s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 249s return _bootstrap._gcd_import(name[level:], package, level) 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1310: in _find_and_load_unlocked 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s :1387: in _gcd_import 249s ??? 249s :1360: in _find_and_load 249s ??? 249s :1331: in _find_and_load_unlocked 249s ??? 249s :935: in _load_unlocked 249s ??? 249s :1022: in exec_module 249s ??? 249s :488: in _call_with_frames_removed 249s ??? 249s tests/util/__init__.py:6: in 249s from dials.array_family import flex 249s /usr/lib/python3/dist-packages/dials/array_family/__init__.py:3: in 249s import dials.model.data # noqa: F401; true import dependency 249s /usr/lib/python3/dist-packages/dials/model/data/__init__.py:3: in 249s import boost_adaptbx.boost.python 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:40: in 249s ext = import_ext("boost_python_meta_ext") 249s /usr/lib/python3/dist-packages/boost_adaptbx/boost/python.py:31: in import_ext 249s raise ImportError( 249s E ImportError: __import__("boost_python_meta_ext"): No module named 'boost_python_meta_ext' 249s E sys.path: 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/framework 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/array_family 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/symmetry 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/statistics 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/spot_finding 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/simulation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/shoebox 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/scaling/cross_validation 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/reflection_basis 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/profile_model 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/polygon/clip 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/integration/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/ssx 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/lattice_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/indexing/basis_vector_search 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/threshold 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/filter 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/fill_holes 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/connected_components 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/image/centroid 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/algorithms/background 249s E /tmp/autopkgtest.zjCLKm/autopkgtest_tmp 249s E /usr/lib/python313.zip 249s E /usr/lib/python3.13 249s E /usr/lib/python3.13/lib-dynload 249s E /usr/local/lib/python3.13/dist-packages 249s E /usr/lib/python3/dist-packages 249s E /usr/lib/python3/dist-packages/setuptools/_vendor 249s =============================== warnings summary =============================== 249s ../../../usr/lib/python3/dist-packages/dials/algorithms/scaling/cross_validation/crossvalidator.py:11 249s /usr/lib/python3/dist-packages/dials/algorithms/scaling/cross_validation/crossvalidator.py:11: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 249s import pkg_resources 249s 249s tests/command_line/test_powder_calibrate.py:7 249s /tmp/autopkgtest.zjCLKm/autopkgtest_tmp/tests/command_line/test_powder_calibrate.py:7: PytestDeprecationWarning: 249s Module 'pyFAI' was found, but when imported by pytest it raised: 249s ImportError('Error importing numpy: you should not try to import numpy from\n its source directory; please exit the numpy source tree, and relaunch\n your python interpreter from there.') 249s In pytest 9.1 this warning will become an error by default. 249s You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 249s See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 249s pytest.importorskip("pyFAI") 249s 249s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 249s =========================== short test summary info ============================ 249s ERROR tests/algorithms/background/test_gmodel.py 249s ERROR tests/algorithms/background/test_outlier_rejector.py 249s ERROR tests/algorithms/clustering/test_observers.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/clustering/test_plots.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/clustering/test_unit_cell.py 249s ERROR tests/algorithms/generate_test_reflections/test_generate_test_refl.py 249s ERROR tests/algorithms/image/centroid/test_generate_bias_lookup_table.py 249s ERROR tests/algorithms/image/threshold/test_local.py 249s ERROR tests/algorithms/indexing/basis_vector_search - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/lattice_search/test_lattice_search.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/ssx/test_analysis.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_assign_indices.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_compare_orientation_matrices.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_index.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_max_cell.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_model_evaluation.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_non_primitive_basis.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_phi_scan.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/indexing/test_symmetry.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/integration/profile/test_empirical_modeller.py 249s ERROR tests/algorithms/integration/profile/test_profile_fitting.py 249s ERROR tests/algorithms/integration/ssx/test_ellipsoid_integrate.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/integration/test_corrections.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/integration/test_filtering.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/integration/test_integrator.py 249s ERROR tests/algorithms/integration/test_kapton.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/integration/test_parallel_integrator.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/integration/test_processor.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/integration/test_simple_integrate.py 249s ERROR tests/algorithms/integration/test_timing_info.py 249s ERROR tests/algorithms/merging/test_french_wilson.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/merging/test_merge.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/polygon/clip/test_clipping.py 249s ERROR tests/algorithms/polygon/test_spatial_interpolation.py 249s ERROR tests/algorithms/profile_model/ellipsoid - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/profile_model/test_calculator.py 249s ERROR tests/algorithms/refinement/test_angle_derivatives_wrt_vector_elts.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_centroid_outlier.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_constraints.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_crystal_parameters.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_cspad_refinement.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_detector_parameters.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_goniometer_parameters.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_multi_experiment_refinement.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_multi_panel_detector_parameterisation.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_parameter_auto_reduction.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_refine_multi_stills.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_refine_multi_wedges.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_refiner_config.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_refiner_units.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_reflection_manager.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_restraints_parameterisation.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_rotation_decomposition.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_scan_varying_beam_refinement.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_scan_varying_block_calculation.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_scan_varying_model_parameters.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_scan_varying_prediction_parameters.py 249s ERROR tests/algorithms/refinement/test_stills_prediction_parameters.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_stills_spherical_relp_derivatives.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_sv_multi_panel_refinement.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_two_theta_refinement.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/refinement/test_xfel_metrology.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/reflection_basis/test_beam_vector_map.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/reflection_basis/test_coordinate_system.py 249s ERROR tests/algorithms/reflection_basis/test_grid_index_generator.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/reflection_basis/test_map_frames.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/reflection_basis/test_transform.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/cross_validation/test_crossvalidation.py 249s ERROR tests/algorithms/scaling/test_Ih_table.py 249s ERROR tests/algorithms/scaling/test_basis_function.py 249s ERROR tests/algorithms/scaling/test_combine_intensities.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_error_model.py 249s ERROR tests/algorithms/scaling/test_gaussian_smoother.py 249s ERROR tests/algorithms/scaling/test_model.py 249s ERROR tests/algorithms/scaling/test_observers.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_outlier_rejection.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_param_manager.py 249s ERROR tests/algorithms/scaling/test_plots.py 249s ERROR tests/algorithms/scaling/test_reflection_selection.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_scale.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_scale_and_filter.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_scale_components.py 249s ERROR tests/algorithms/scaling/test_scaler.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_scaler_factory.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_scaling_library.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_scaling_restraints.py 249s ERROR tests/algorithms/scaling/test_scaling_utilities.py 249s ERROR tests/algorithms/scaling/test_target_function.py 249s ERROR tests/algorithms/scaling/test_targetscaler.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/scaling/test_weighting.py 249s ERROR tests/algorithms/shoebox/test_bbox_calculator.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/shoebox/test_find_overlapping.py 249s ERROR tests/algorithms/shoebox/test_mask_foreground.py 249s ERROR tests/algorithms/shoebox/test_mask_overlapping.py 249s ERROR tests/algorithms/shoebox/test_partiality_calculator.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/simulation/test_reciprocal_space.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/spot_finding/test_per_image_analysis.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/spot_prediction/test_reeke_index_generator.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/spot_prediction/test_scan_static_reflection_predictor.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/spot_prediction/test_scan_varying_predictor.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/spot_prediction/test_scan_varying_reflection_predictor.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/statistics/test_binned_statistics.py 249s ERROR tests/algorithms/statistics/test_delta_cchalf_algorithm.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/absences/test_laue_group_info.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/absences/test_plots.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/absences/test_screw_axes.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/cosym/test_cosym_analyse_datasets.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/cosym/test_cosym_symmetry_analysis.py 249s ERROR tests/algorithms/symmetry/cosym/test_cosym_target.py 249s ERROR tests/algorithms/symmetry/cosym/test_observers.py 249s ERROR tests/algorithms/symmetry/cosym/test_plots.py 249s ERROR tests/algorithms/symmetry/test_correlation_coefficient_accumulator.py 249s ERROR tests/algorithms/symmetry/test_laue_group.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/test_origin.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/test_reindex_to_reference.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/algorithms/symmetry/test_score_symmetry_element_subgroup.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/array_family/test_identifiers_handling.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/array_family/test_reflection_table.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_anvil_correction.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_apply_mask.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_assign_experiment_identifiers.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_cluster_unit_cell.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_combine_experiments.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_compute_delta_cchalf.py 249s ERROR tests/command_line/test_cosym.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_damage_analysis.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_detect_blanks.py 249s ERROR tests/command_line/test_estimate_resolution.py 249s ERROR tests/command_line/test_export.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_export_bitmaps.py 249s ERROR tests/command_line/test_export_xds.py 249s ERROR tests/command_line/test_filter_reflections.py 249s ERROR tests/command_line/test_find_rotation_axis.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_find_spots.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_frame_orientations.py 249s ERROR tests/command_line/test_generate_distortion_maps.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_generate_mask.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_import.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_import_xds.py 249s ERROR tests/command_line/test_indexed_as_integrated.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_integrate.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_merge.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_missing_reflections.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_model_background.py 249s ERROR tests/command_line/test_modify_geometry.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_plot_Fo_vs_Fc.py 249s ERROR tests/command_line/test_plot_scan_varying_model.py 249s ERROR tests/command_line/test_predict.py 249s ERROR tests/command_line/test_preservation_of_experiment_identifiers.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_refine.py 249s ERROR tests/command_line/test_refine_bravais_settings.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_reindex.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_rs_mapper.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_search_beam_position.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_sequence_to_stills.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_show.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_slice_sequence.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_sort_reflections.py 249s ERROR tests/command_line/test_split_experiments.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_ssx_index.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_ssx_integrate.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_stereographic_projections.py 249s ERROR tests/command_line/test_stills_process.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_symmetry.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/command_line/test_two_theta_refine.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/model/data/test_shoebox.py 249s ERROR tests/report/test_analysis.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/report/test_plots.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/test_phil.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/test_pychef.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/test_scan_varying_integration_bug.py - FileNotFoundError: [Errno 2] No such file or directory: '/usr/lib/cctbx/python3.13' 249s ERROR tests/test_scitbx.py 249s ERROR tests/util/test_ascii_art.py 249s ERROR tests/util/test_batch_handling.py 249s ERROR tests/util/test_detect_blanks.py 249s ERROR tests/util/test_exception_handler.py 249s ERROR tests/util/test_exclude_images.py 249s ERROR tests/util/test_export_bitmaps.py 249s ERROR tests/util/test_export_mtz.py 249s ERROR tests/util/test_filter_reflections_export.py 249s ERROR tests/util/test_htcondor_job_classad.py 249s ERROR tests/util/test_image_grouping.py 249s ERROR tests/util/test_log.py 249s ERROR tests/util/test_masking.py 249s ERROR tests/util/test_missing_reflections.py 249s ERROR tests/util/test_mp.py 249s ERROR tests/util/test_multi_dataset_handling.py 249s ERROR tests/util/test_nexus.py 249s ERROR tests/util/test_nexus_multi_experiment.py 249s ERROR tests/util/test_observer.py 249s ERROR tests/util/test_options.py 249s ERROR tests/util/test_python_streambuf.py 249s ERROR tests/util/test_reference.py 249s ERROR tests/util/test_render_3d.py 249s ERROR tests/util/test_resolution_analysis.py 249s ERROR tests/util/test_slice.py 249s !!!!!!!!!!!!!!!!!! Interrupted: 196 errors during collection !!!!!!!!!!!!!!!!!!! 249s ================= 1 skipped, 2 warnings, 196 errors in 15.03s ================== 249s autopkgtest [13:39:23]: test command1: -----------------------] 250s command1 FAIL non-zero exit status 2 250s autopkgtest [13:39:24]: test command1: - - - - - - - - - - results - - - - - - - - - - 250s autopkgtest [13:39:24]: @@@@@@@@@@@@@@@@@@@@ summary 250s command1 FAIL non-zero exit status 2 256s nova [W] Skipping flock for amd64 256s Creating nova instance adt-plucky-amd64-dials-20241114-133514-juju-7f2275-prod-proposed-migration-environment-20-cb61bbaa-76e0-422d-97a1-9a704f3b08f1 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...